Citrus Sinensis ID: 027022

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MKALLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEEccccccccccccccccccccccccEEEEccccEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEcccccccccEEcccccccccccEEEEEEccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccHHHcccccccccccccccHHHHHHHHcccEEEEEEEEEEcccccccccccccccccccccccccEEEEccccEEEEccEEEcccccccccccEEEEEEEccccccEEEEEEEEcccccccEEEEEEccccccccEEEEccccccccccEEEEEcccccccccEEEEEEEc
Coil and Loop (DISEMBL)
MKALLSSlqtlpvstastdvnktkslditrrssigfgSSVILSSFLvnfcspsstlpsfrSAIALQQKDELQLEEDRVVQLFqetspsvvsiqdlelsknpkstsselmlvdgeyakvegtgsgfvwdkfghIVTNYHVVAKLAtdtsglhrckvslfdakgngfyregkmvgcdpaydLAVLKVDVegfelkpvvlgtshdlrvgqscfaignpygfedtlttgvtfq
Flexible Loop (DISEMBL)
mkallsslqtlpvstastdvnktkslditrrssiGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQetspsvvsiqdlelsknpkstsselMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLAtdtsglhrCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Low Complexity Region (SEG)
MKALLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Disordered region (IsUnstruct)
*******************************SSIGFGSSVILSSFLVNFCSPSSTL**FR*AIA**************V*L***************************MLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV***
Disordered Region (DISOPRED)
****************************TRRSSIGFGSSVILSSFLVNFCSP************************RVVQLFQETSPSVVSIQDLELS**************************FVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Disordered Region (DISEMBL)
********QTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Disordered Region (DISPRO)
***LLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIA*********EEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKALLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9SEL7	323	Protease Do-like 5, chlor	yes	no	0.637	0.452	0.713	9e-56
Q9LU10	448	Protease Do-like 8, chlor	no	no	0.764	0.390	0.414	3e-28
O22609	439	Protease Do-like 1, chlor	no	no	0.641	0.334	0.421	2e-26
P73354	452	Putative serine protease	N/A	no	0.742	0.376	0.331	7e-14
P72780	394	Putative serine protease	N/A	no	0.432	0.251	0.390	2e-13
P73940	416	Putative serine protease	N/A	no	0.707	0.389	0.323	7e-13
F6AA62	479	Probable periplasmic seri	yes	no	0.441	0.210	0.385	2e-12
P05676	406	Uncharacterized serine pr	no	no	0.423	0.238	0.398	2e-12
Q2SL36	469	Probable periplasmic seri	yes	no	0.419	0.204	0.415	3e-12
P18584	497	Probable periplasmic seri	yes	no	0.401	0.185	0.4	7e-12

>sp|Q9SEL7|DEGP5_ARATH Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3

 Score =  216 bits (551), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 107/150 (71%), Positives = 120/150 (80%), Gaps = 4/150 (2%)

Query: 77  RVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTN 136
           R V LFQ+TSPSVV I+ +EL K    TSS  +L D E  K+EGTGSGFVWDK GHIVTN
Sbjct: 90  RNVNLFQKTSPSVVYIEAIELPK----TSSGDILTDEENGKIEGTGSGFVWDKLGHIVTN 145

Query: 137 YHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVV 196
           YHV+AKLATD  GL RCKVSL DAKG  F +EGK+VG DP  DLAVLK++ EG EL PVV
Sbjct: 146 YHVIAKLATDQFGLQRCKVSLVDAKGTRFSKEGKIVGLDPDNDLAVLKIETEGRELNPVV 205

Query: 197 LGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           LGTS+DLRVGQSCFAIGNPYG+E+TLT GV
Sbjct: 206 LGTSNDLRVGQSCFAIGNPYGYENTLTIGV 235

Probable serine protease.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q9LU10|DEGP8_ARATH Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 30/205 (14%)

Query: 40  VILSSFLVNFC-SPSSTLPSFRSAIALQQKDELQLE---------------EDRVVQLFQ 83
           ++L+S  +N C +PS  L    SA+AL       +E               E R+VQLF+
Sbjct: 69  ILLTSLFMNLCFNPSRYL----SALALGDPSVATVEDVSPTVFPAGPLFPTEGRIVQLFE 124

Query: 84  ETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK- 142
           + + SVV+I D+ L    K T        G     EG GSG VWD  G+IVTNYHV+   
Sbjct: 125 KNTYSVVNIFDVTLRPQLKMT--------GVVEIPEGNGSGVVWDGQGYIVTNYHVIGNA 176

Query: 143 LATDTS-GLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
           L+ + S G    +V++  + G     EGK+VG D A DLAVLKVD     LKP+ +G S+
Sbjct: 177 LSRNPSPGDVVGRVNILASDGVQKNFEGKLVGADRAKDLAVLKVDAPETLLKPIKVGQSN 236

Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
            L+VGQ C AIGNP+GF+ TLT GV
Sbjct: 237 SLKVGQQCLAIGNPFGFDHTLTVGV 261

Probable serine protease.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O22609|DEGP1_ARATH Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 19/166 (11%)

Query: 61  SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
           SA  +    +LQ +E   V+LFQE +PSVV I +L + ++  + + +++ V       +G
Sbjct: 104 SAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQD--AFTLDVLEVP------QG 155

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGFVWDK GHIVTNYHV+        G    +V+L D        + K+VG D   D+
Sbjct: 156 SGSGFVWDKQGHIVTNYHVI-------RGASDLRVTLADQT----TFDAKVVGFDQDKDV 204

Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           AVL++D    +L+P+ +G S DL VGQ  FAIGNP+G + TLTTGV
Sbjct: 205 AVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGV 250

Serine protease that is required at high temperature. May be involved in the degradation of damaged proteins. In vivo, can degrade beta-casein.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P73354|HTRA_SYNY3 Putative serine protease HtrA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=htrA PE=1 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 26/196 (13%)

Query: 43  SSFLVNFCSPSSTLPSFRS-AIALQQKDELQLEEDRVVQLFQETSPSVVSI--QDLELSK 99
           +S +    +  S  P+  S A  LQ +   +   + VV + + T P+VV I  Q    S+
Sbjct: 83  NSVISPLVTNQSIAPANESLATNLQSRLSPREPSNFVVDVVESTGPAVVRINAQKTVKSQ 142

Query: 100 NPKSTS---------SELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGL 150
            P++ +         S++  +  E  +  GTGSGF+    G I TN HVV        G 
Sbjct: 143 VPQAFNDPFLQRFFGSQMPPMPNERVQ-RGTGSGFIVSNDGKIFTNAHVV-------DGA 194

Query: 151 HRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCF 210
               V+L D  G  F   G+++G DP+ D+AV+K+  E  +L  V LG S  L+VG+   
Sbjct: 195 DEVTVTLKD--GRSF--PGRVMGSDPSTDVAVVKI--EAGDLPTVALGDSDHLQVGEWAI 248

Query: 211 AIGNPYGFEDTLTTGV 226
           AIGNP G ++T+TTG+
Sbjct: 249 AIGNPLGLDNTVTTGI 264

A putative protease, its function overlaps that of the related putative proteases HhoA and HhoB.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P72780|HHOA_SYNY3 Putative serine protease HhoA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hhoA PE=1 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 11/110 (10%)

Query: 117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP 176
           ++ G GSGF+ D  G I+TN HVV        G  +  V+L D    G   +G++ G D 
Sbjct: 107 RIAGQGSGFIIDNSGIILTNAHVV-------DGASKVVVTLRD----GRTFDGQVRGTDE 155

Query: 177 AYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             DLAV+K++ +G  L    LGTS +L+VG    A+GNP G ++T+T G+
Sbjct: 156 VTDLAVVKIEPQGSALPVAPLGTSSNLQVGDWAIAVGNPVGLDNTVTLGI 205

A putative protease, its function overlaps that of the related putative proteases HhoB and HtrA.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P73940|HHOB_SYNY3 Putative serine protease HhoB OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hhoB PE=1 SV=1

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 33/195 (16%)

Query: 50  CSPSSTLPS-----FRSAIALQQKDELQLEEDR--VVQLFQETSPSVVSI--------QD 94
            SP S  P+     +RSA+ L      Q +++   + +  Q+  P+VV I        Q 
Sbjct: 47  TSPQSLTPAPVESNYRSALPLTLPRSAQDDQELNFIARAVQKIGPAVVRIDSERTAVSQG 106

Query: 95  LELSKNP--KSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHR 152
             +   P  +    E M  + +  + +GTGSGF+    G ++TN HVV        G   
Sbjct: 107 GPMGDQPFFRRFFGEEMPPNPD-PREQGTGSGFILSSDGEVLTNAHVV-------EGAST 158

Query: 153 CKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVV-LGTSHDLRVGQSCFA 211
            KV+L D    G   EGK++G D   D+AV+KV+ E     PVV +G S  L+ G+   A
Sbjct: 159 VKVTLKD----GSVLEGKVMGIDTMTDVAVVKVEAENL---PVVEIGQSDRLQPGEWAIA 211

Query: 212 IGNPYGFEDTLTTGV 226
           IGNP G ++T+T G+
Sbjct: 212 IGNPLGLDNTVTVGI 226

A putative protease, its function overlaps that of the related putative proteases HtrA and HhoA.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|F6AA62|DEGPL_PSEF1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas fulva (strain 12-X) GN=Psefu_3239 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 13/114 (11%)

Query: 113 GEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMV 172
           G   + +  GSGF+  K G+I+TN HVVA             V L D        E K++
Sbjct: 93  GRQREAQSLGSGFIISKDGYILTNNHVVADA-------DEIIVRLSDRS----ELEAKLI 141

Query: 173 GCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           G DP  D+A+LKV  E  +L  V LG S +L+VG+   AIG+P+GF+ ++T G+
Sbjct: 142 GTDPRSDVALLKV--EANDLPTVKLGNSDNLKVGEWVLAIGSPFGFDHSVTAGI 193

Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions.

Pseudomonas fulva (strain 12-X) (taxid: 743720)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|P05676|Y938_SYNP6 Uncharacterized serine protease syc0938_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0938_d PE=3 SV=2

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 11/108 (10%)

Query: 119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAY 178
            G GSGFV D  G I+TN HVVA          + +V+L D  G  F   G++ G D   
Sbjct: 122 RGQGSGFVVDGNGLIMTNAHVVANA-------DQVRVTLRD--GREFT--GRVRGADSVT 170

Query: 179 DLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           DLA+++VD +G  L    +G S ++ VG    AIGNP G ++T+T G+
Sbjct: 171 DLALVEVDTKGERLPTARIGNSSNVEVGDWAIAIGNPLGLDNTVTLGI 218

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q2SL36|DEGPL_HAHCH Probable periplasmic serine endoprotease DegP-like OS=Hahella chejuensis (strain KCTC 2396) GN=mucD PE=3 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 17/113 (15%)

Query: 117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYRE--GKMVGC 174
           + + TGSGF+  K G+I+TN HVVA       G     V L D       RE   K++G 
Sbjct: 87  EAQSTGSGFIVSKDGYILTNNHVVA-------GADEIFVRLMD------RRELTAKLIGS 133

Query: 175 DPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT 227
           D   DLAVLKV+ +  +L  + LG S +L+VG+   AIG+P+GFE T+T G+ 
Sbjct: 134 DEKSDLAVLKVEAD--DLPVLNLGKSSELKVGEWVVAIGSPFGFEYTVTAGIV 184

Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions.

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

>sp|P18584|DEGPL_CHLTR Probable periplasmic serine endoprotease DegP-like OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=htrA PE=3 SV=2

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 13/105 (12%)

Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
           G+GF+  + G++VTN+HVV     D   +H   V+L D    G     K+VG DP  DLA
Sbjct: 127 GTGFIVSEDGYVVTNHHVV----EDAGKIH---VTLHD----GQKYTAKIVGLDPKTDLA 175

Query: 182 VLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           V+K+  E  +L  +  G S  L++G    AIGNP+G + T+T GV
Sbjct: 176 VIKIQAE--KLPFLTFGNSDQLQIGDWAIAIGNPFGLQATVTVGV 218

Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions.

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
388503124	315	unknown [Lotus japonicus]	0.890	0.647	0.641	2e-72
255557249	326	Protease degS precursor, putative [Ricin	0.934	0.656	0.660	3e-72
356546506	304	PREDICTED: protease Do-like 5, chloropla	0.925	0.697	0.633	2e-69
225443904	313	PREDICTED: protease Do-like 5, chloropla	0.829	0.607	0.702	1e-68
224114273	298	predicted protein [Populus trichocarpa]	0.886	0.681	0.637	1e-64
357447247	316	Protease Do-like protein [Medicago trunc	0.860	0.623	0.670	1e-63
449439571	304	PREDICTED: protease Do-like 5, chloropla	0.842	0.634	0.606	2e-63
388500474	316	unknown [Medicago truncatula]	0.855	0.620	0.668	3e-63
356557803	306	PREDICTED: protease Do-like 5, chloropla	0.921	0.689	0.601	1e-61
297804332	320	hypothetical protein ARALYDRAFT_493027 [	0.825	0.590	0.626	5e-57

>gi|388503124|gb|AFK39628.1| unknown [Lotus japonicus]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 171/223 (76%), Gaps = 19/223 (8%)

Query: 6   SSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSF--LVNFCSPSSTLPSFRSAI 63
           SS + LP +TA+          IT R ++ FGS  +++S+  L N  SP         A+
Sbjct: 22  SSTKCLPSATAA----------ITSRRAMVFGSGFVIASWFNLANLNSPPL-------AL 64

Query: 64  ALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGS 123
           A   +DELQ EED +VQLFQETSPSVV I+DLEL+K PK++S E+ML + E AKVEGTGS
Sbjct: 65  AELLQDELQQEEDNLVQLFQETSPSVVFIKDLELTKVPKTSSDEVMLNEDEDAKVEGTGS 124

Query: 124 GFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVL 183
           GF+WDKFGHIVTNYHVVAKLATDTSGL RCKV L D KGN FYREGK++G DPAYDLAVL
Sbjct: 125 GFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDTKGNSFYREGKIIGFDPAYDLAVL 184

Query: 184 KVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           KVDV+G+E+KPV LG S++L VGQSCFAIGNPYG+E+TLTTGV
Sbjct: 185 KVDVDGYEIKPVALGQSNNLNVGQSCFAIGNPYGYENTLTTGV 227

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557249|ref|XP_002519655.1| Protease degS precursor, putative [Ricinus communis] gi|223541072|gb|EEF42628.1| Protease degS precursor, putative [Ricinus communis]

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 142/215 (66%), Positives = 164/215 (76%), Gaps = 1/215 (0%)

Query: 12  PVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDEL 71
           P S     +NK+      RR+ +GFGSS++++S L      S       SAIALQ+ D+L
Sbjct: 25  PCSNIEDSLNKSLINLARRRAVVGFGSSMVMASLLNVHNLNSLLPSLLHSAIALQE-DDL 83

Query: 72  QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFG 131
           Q EEDRVV LFQ TSPSVV I+DLEL+K PKS+S++  L + E AKVEGTGSGF+WD FG
Sbjct: 84  QKEEDRVVNLFQLTSPSVVFIKDLELAKIPKSSSNDATLTEDENAKVEGTGSGFIWDTFG 143

Query: 132 HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFE 191
           HIVTNYHVVAKLATD SGL RCKV L D+ GN  YREGK++G DPAYDLAVLKVDVEG E
Sbjct: 144 HIVTNYHVVAKLATDQSGLQRCKVFLVDSAGNSLYREGKIIGFDPAYDLAVLKVDVEGHE 203

Query: 192 LKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           LKP VLGTS DL VGQSCFAIGNPYG+E+TLTTGV
Sbjct: 204 LKPAVLGTSRDLLVGQSCFAIGNPYGYENTLTTGV 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546506|ref|XP_003541667.1| PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/224 (63%), Positives = 170/224 (75%), Gaps = 12/224 (5%)

Query: 3   ALLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSA 62
           +L ++L  LP+ T  +      S+  TRR++I FGSS++L +         ST P+    
Sbjct: 5   SLQNNLFPLPLPTTPSSTKSFPSV-TTRRATI-FGSSLVLLN---------STPPTLAQQ 53

Query: 63  IALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTG 122
           +     DELQ +ED +VQLFQ+ S SVV I+DLEL+K PKS+S   ML D E AKVEGTG
Sbjct: 54  LP-NDHDELQQQEDHLVQLFQDASLSVVFIKDLELTKVPKSSSKGAMLNDDEDAKVEGTG 112

Query: 123 SGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAV 182
           SGF+WDKFGHIVTNYHVVAKLATDTSGL RCKV L DAKGN F REGK++G DPAYDLAV
Sbjct: 113 SGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDAKGNSFDREGKIIGFDPAYDLAV 172

Query: 183 LKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           LKVDV+G+E+KPVVLG S+DLRVGQSCFAIGNPYG+E+TLTTGV
Sbjct: 173 LKVDVDGYEIKPVVLGQSNDLRVGQSCFAIGNPYGYENTLTTGV 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443904|ref|XP_002278272.1| PREDICTED: protease Do-like 5, chloroplastic [Vitis vinifera] gi|297740743|emb|CBI30925.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 162/198 (81%), Gaps = 8/198 (4%)

Query: 29  TRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPS 88
           TRR +I FG+  + SSFL       S  P+F SAIA Q++D+ Q +E+RVV LFQ+TSPS
Sbjct: 36  TRREAIVFGTCFV-SSFL-------SFTPAFPSAIAQQEQDQFQQDEERVVHLFQDTSPS 87

Query: 89  VVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTS 148
           VV I+DLE+ K+P S+S+E ML + E  KVEGTGSGF+WDKFGHIVTNYHVVAKLATDTS
Sbjct: 88  VVFIKDLEIVKSPTSSSNESMLNENENTKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTS 147

Query: 149 GLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQS 208
           GL RCKV L DAKGN F RE K++G DPAYDLAVLKVD+EG ELKPVVLGTS D+RVGQS
Sbjct: 148 GLQRCKVYLVDAKGNSFSREAKIIGYDPAYDLAVLKVDIEGNELKPVVLGTSRDIRVGQS 207

Query: 209 CFAIGNPYGFEDTLTTGV 226
           CFAIGNPYG+E+TLTTGV
Sbjct: 208 CFAIGNPYGYENTLTTGV 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114273|ref|XP_002316715.1| predicted protein [Populus trichocarpa] gi|222859780|gb|EEE97327.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 152/204 (74%), Gaps = 1/204 (0%)

Query: 23  TKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLF 82
            KSL + RR +I  GSS ++ + L+N  +P S  P   SA A QQ +  Q E+ RV  LF
Sbjct: 8   NKSLVLGRRRTIAVGSSAVVLASLLNLHNPISNPPLLHSAFAQQQDELQQQED-RVAHLF 66

Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           QE+SPSVV I+D+EL+K P       ML + E AKVEGTGSGF+WDKFGHIVTNYHVVAK
Sbjct: 67  QESSPSVVFIKDIELAKVPNRPEDRFMLTEDENAKVEGTGSGFIWDKFGHIVTNYHVVAK 126

Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
           LATD SGL  CKV L DA GN  YREG ++G DP+YDLAVLKVDVEG+ELKP  LGTS +
Sbjct: 127 LATDKSGLQCCKVFLVDAGGNSLYREGTIIGFDPSYDLAVLKVDVEGYELKPATLGTSRE 186

Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
           L VGQSCFAIGNPYG+E+TLTTGV
Sbjct: 187 LHVGQSCFAIGNPYGYENTLTTGV 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447247|ref|XP_003593899.1| Protease Do-like protein [Medicago truncatula] gi|355482947|gb|AES64150.1| Protease Do-like protein [Medicago truncatula]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 163/197 (82%)

Query: 30  RRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSV 89
           +R +I F SS++++S+L      S+   S   +++ Q +DELQ +ED +V LFQETSPSV
Sbjct: 32  KRRAIVFSSSLVVASWLNFLNFNSAQPLSLSLSLSQQLQDELQQQEDHLVHLFQETSPSV 91

Query: 90  VSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSG 149
           VSI+D+EL+K PK++S E+ML + E AKVEGTGSGF+WDKFGHIVTNYHVVAKLATDTSG
Sbjct: 92  VSIKDIELTKVPKTSSKEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSG 151

Query: 150 LHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSC 209
           L RCKV L DAKGN F REGK++G DP+YDLAVLKVDV+G+ELKPVV+G S +L VGQSC
Sbjct: 152 LQRCKVFLVDAKGNNFSREGKIIGFDPSYDLAVLKVDVDGYELKPVVIGESKNLHVGQSC 211

Query: 210 FAIGNPYGFEDTLTTGV 226
           FAIGNPYG+E+TLTTGV
Sbjct: 212 FAIGNPYGYENTLTTGV 228

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439571|ref|XP_004137559.1| PREDICTED: protease Do-like 5, chloroplastic-like [Cucumis sativus] gi|449523866|ref|XP_004168944.1| PREDICTED: protease Do-like 5, chloroplastic-like [Cucumis sativus]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 145/201 (72%), Gaps = 8/201 (3%)

Query: 26  LDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQET 85
           L  T R +I F  + +L S L       + LP        Q +D L  EEDR V LFQET
Sbjct: 24  LPFTSRRAILFSPAALLPSLLAFPLPTHAALP--------QLQDHLLQEEDRTVSLFQET 75

Query: 86  SPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLAT 145
           SPSVV I DLEL KNP++ S + ML++ +  KV+GTGSGFVWDKFGHIVTNYHVV+ LAT
Sbjct: 76  SPSVVYINDLELPKNPQAPSQQPMLIEDDNLKVKGTGSGFVWDKFGHIVTNYHVVSALAT 135

Query: 146 DTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRV 205
           D SG  RCKV+L D KGNG Y+E K+VG DP YDLAVLKV++EG ELKP+V GTS +LRV
Sbjct: 136 DNSGSQRCKVNLVDVKGNGIYKEAKIVGFDPEYDLAVLKVELEGHELKPIVFGTSRNLRV 195

Query: 206 GQSCFAIGNPYGFEDTLTTGV 226
           GQSC+AIGNP+G+E TLT GV
Sbjct: 196 GQSCYAIGNPFGYEKTLTAGV 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500474|gb|AFK38303.1| unknown [Medicago truncatula]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 162/196 (82%)

Query: 30  RRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSV 89
           +R +I F SS++++S+L      S+   S   +++ Q +DELQ +ED +V LFQETSPSV
Sbjct: 32  KRRAIVFSSSLVVASWLNFLNFNSAQPLSLSLSLSQQLQDELQQQEDHLVHLFQETSPSV 91

Query: 90  VSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSG 149
           VSI+D+EL+K PK++S E+ML + E AKVEGTGSGF+WDKFGHIVTNYHVVAKLATDTSG
Sbjct: 92  VSIKDIELTKVPKTSSKEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSG 151

Query: 150 LHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSC 209
           L RCKV L DAKGN F REGK++G DP+YDLAVLKVDV+G+ELKPVV+G S +L VGQSC
Sbjct: 152 LQRCKVFLVDAKGNNFSREGKIIGFDPSYDLAVLKVDVDGYELKPVVIGESKNLHVGQSC 211

Query: 210 FAIGNPYGFEDTLTTG 225
           FAIGNPYG+E+TLTTG
Sbjct: 212 FAIGNPYGYENTLTTG 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557803|ref|XP_003547200.1| PREDICTED: protease Do-like 5, chloroplastic-like [Glycine max]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 163/226 (72%), Gaps = 15/226 (6%)

Query: 3   ALLSSLQTLPVSTASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSA 62
           +L ++L  LP+ T  +      S+  T R++I FGSS++L        S   TL     A
Sbjct: 5   SLQNNLFPLPMLTTPSSTKSFPSV-TTCRATI-FGSSLVL------LYSTPLTL-----A 51

Query: 63  IALQQKDELQLEEDRVVQLFQETSPSVVS--IQDLELSKNPKSTSSELMLVDGEYAKVEG 120
             L   DELQ +ED +VQLFQ T    V   I+DLEL+K PKS+S  +ML + E AKVEG
Sbjct: 52  QQLPNYDELQQQEDHLVQLFQVTGYFTVGCFIKDLELAKVPKSSSKGVMLNEDEDAKVEG 111

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           TGSGF+WDKF HIVTNYHVVAKLATDT GL RCKV L DAKGN F REG ++G DPAYDL
Sbjct: 112 TGSGFIWDKFDHIVTNYHVVAKLATDTRGLQRCKVFLVDAKGNSFDREGTIIGFDPAYDL 171

Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           AVLKVDV+G+E+KPVVLG S++LRVGQSCFAIGNPYG+E+TLTTGV
Sbjct: 172 AVLKVDVDGYEVKPVVLGQSNNLRVGQSCFAIGNPYGYENTLTTGV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804332|ref|XP_002870050.1| hypothetical protein ARALYDRAFT_493027 [Arabidopsis lyrata subsp. lyrata] gi|297315886|gb|EFH46309.1| hypothetical protein ARALYDRAFT_493027 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 126/201 (62%), Positives = 148/201 (73%), Gaps = 12/201 (5%)

Query: 30  RRSSIGFGSSVILSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEED----RVVQLFQET 85
           RR  + FGSS+ L+S L+   S    LP   SAIAL+Q  E + E +    R V LFQ+T
Sbjct: 40  RRRIVIFGSSLALASSLIG--SNQKRLP-MESAIALEQLKEKEDELEEEEERNVNLFQKT 96

Query: 86  SPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLAT 145
           SPSVV I+ +EL   PK++S E    D E AK+EGTGSGFVWDK GHIVTNYHV+AKLAT
Sbjct: 97  SPSVVYIEAIEL---PKTSSGEFS--DEENAKIEGTGSGFVWDKLGHIVTNYHVIAKLAT 151

Query: 146 DTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRV 205
           D  GL RCKVSL DA G  F ++GK+VG DP  DLAVLK++ EG ELKPVVLGTS+DLRV
Sbjct: 152 DQFGLQRCKVSLVDATGTRFSKQGKIVGLDPDNDLAVLKIETEGRELKPVVLGTSNDLRV 211

Query: 206 GQSCFAIGNPYGFEDTLTTGV 226
           GQSCFAIGNPYG+E+TLT GV
Sbjct: 212 GQSCFAIGNPYGYENTLTIGV 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2124509	323	DEG5 "degradation of periplasm	0.947	0.671	0.587	1.5e-58
TAIR|locus:2151916	448	DEG8 "degradation of periplasm	0.886	0.453	0.384	3.4e-26
UNIPROTKB|Q607N4	374	MCA1725 "Putative serine prote	0.414	0.254	0.5	5.8e-21
TAIR|locus:2086420	439	DEG1 "degradation of periplasm	0.423	0.220	0.509	3.3e-20
TIGR_CMR|GSU_0080	471	GSU_0080 "protease degQ" [Geob	0.593	0.288	0.370	7.3e-14
TIGR_CMR|SPO_1625	478	SPO_1625 "periplasmic serine p	0.419	0.200	0.425	2.1e-13
UNIPROTKB|P72780	394	hhoA "Putative serine protease	0.432	0.251	0.4	2.8e-13
UNIPROTKB|O53896	464	pepD "Probable serine protease	0.502	0.247	0.375	5.3e-13
TIGR_CMR|APH_1148	490	APH_1148 "protease DO family p	0.427	0.2	0.436	7.5e-13
UNIPROTKB|P18584	497	htrA "Probable periplasmic ser	0.401	0.185	0.4	7.3e-12

TAIR|locus:2124509 DEG5 "degradation of periplasmic proteins 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 138/235 (58%), Positives = 166/235 (70%)

Query:     2 KALLSSLQTL-PVST-----ASTDVNKTKSLDITRRSSIGFGSSVILSSFLVNFCSPSST 55
             KA  S   TL P++      A +  N    +D  RR  I FGSS+ L+S L+   S    
Sbjct:     9 KAFSSIFNTLSPINQSKFVLACSGSNHVDVIDRRRRIMI-FGSSLALTSSLLG--SNQQR 65

Query:    56 LPSFRSAIALQQ----KDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLV 111
             LP   SAIAL+Q    ++EL+ EE+R V LFQ+TSPSVV I+ +EL   PK++S ++ L 
Sbjct:    66 LP-MESAIALEQFKEKEEELEEEEERNVNLFQKTSPSVVYIEAIEL---PKTSSGDI-LT 120

Query:   112 DGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKM 171
             D E  K+EGTGSGFVWDK GHIVTNYHV+AKLATD  GL RCKVSL DAKG  F +EGK+
Sbjct:   121 DEENGKIEGTGSGFVWDKLGHIVTNYHVIAKLATDQFGLQRCKVSLVDAKGTRFSKEGKI 180

Query:   172 VGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             VG DP  DLAVLK++ EG EL PVVLGTS+DLRVGQSCFAIGNPYG+E+TLT GV
Sbjct:   181 VGLDPDNDLAVLKIETEGRELNPVVLGTSNDLRVGQSCFAIGNPYGYENTLTIGV 235

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2151916 DEG8 "degradation of periplasmic proteins 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 90/234 (38%), Positives = 124/234 (52%)

Query:    12 PVSTASTDVNKTKSL-DITRRSSIGFGSSVILSSFLVNFC-SPSSTLPSFRSAIALQQKD 69
             PVS+     +   +L ++  +S       ++L+S  +N C +PS  L    SA+AL    
Sbjct:    40 PVSSVKVTQDWKSNLHELAVKSVPSTTRRILLTSLFMNLCFNPSRYL----SALALGDPS 95

Query:    70 ELQLE---------------EDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGE 114
                +E               E R+VQLF++ + SVV+I D+ L    K T        G 
Sbjct:    96 VATVEDVSPTVFPAGPLFPTEGRIVQLFEKNTYSVVNIFDVTLRPQLKMT--------GV 147

Query:   115 YAKVEGTGSGFVWDKFGHIVTNYHVVAK-LATDTS-GLHRCKVSLFDAKGNGFYREGKMV 172
                 EG GSG VWD  G+IVTNYHV+   L+ + S G    +V++  + G     EGK+V
Sbjct:   148 VEIPEGNGSGVVWDGQGYIVTNYHVIGNALSRNPSPGDVVGRVNILASDGVQKNFEGKLV 207

Query:   173 GCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             G D A DLAVLKVD     LKP+ +G S+ L+VGQ C AIGNP+GF+ TLT GV
Sbjct:   208 GADRAKDLAVLKVDAPETLLKPIKVGQSNSLKVGQQCLAIGNPFGFDHTLTVGV 261

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS;IDA

GO:0008236 "serine-type peptidase activity" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB|Q607N4 MCA1725 "Putative serine protease" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 247 (92.0 bits), Expect = 5.8e-21, P = 5.8e-21
 Identities = 54/108 (50%), Positives = 70/108 (64%)

Query:   120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
             GTGSGF+WD+ GH+VTNYHVV        G     V L D +    YR   +VG   A+D
Sbjct:    91 GTGSGFIWDEAGHVVTNYHVV-------EGASGATVKLADGRD---YRAA-LVGVSKAHD 139

Query:   180 LAVLKVDV-EGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             LAVL++DV +G    P+ +G SHDL+VGQ  FAIGNP+G + +LTTG+
Sbjct:   140 LAVLRIDVGQGIP-SPLPIGVSHDLKVGQKVFAIGNPFGLDWSLTTGI 186

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TAIR|locus:2086420 DEG1 "degradation of periplasmic proteins 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 55/108 (50%), Positives = 73/108 (67%)

Query:   119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAY 178
             +G+GSGFVWDK GHIVTNYHV+ + A+D       +V+L D     F  + K+VG D   
Sbjct:   154 QGSGSGFVWDKQGHIVTNYHVI-RGASDL------RVTLADQ--TTF--DAKVVGFDQDK 202

Query:   179 DLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             D+AVL++D    +L+P+ +G S DL VGQ  FAIGNP+G + TLTTGV
Sbjct:   203 DVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGV 250

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008236 "serine-type peptidase activity" evidence=ISS;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030163 "protein catabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0010206 "photosystem II repair" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TIGR_CMR|GSU_0080 GSU_0080 "protease degQ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 187 (70.9 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 57/154 (37%), Positives = 80/154 (51%)

Query:    79 VQLFQETSPSVVSIQDLELSK--NPKSTSSELM--LVDGE--YAKVEGTGSGFVWDKFGH 132
             V+L ++ +PSVV+I  +   K   P    S       D    + + +  GSGF+ ++ G+
Sbjct:    53 VELVKKVTPSVVNISTVSRRKIEQPFFEFSPFFNDFFDNRPRFRREQSLGSGFIINREGY 112

Query:   133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFEL 192
             IVTN HVV     D   +   KV L        Y +G +VG DP  D+AV+K+D    EL
Sbjct:   113 IVTNDHVVR----DAESI---KVKL---SNENVY-DGHIVGSDPKTDIAVIKIDSRE-EL 160

Query:   193 KPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
                VL  S  L+VGQ   AIGNP+G + T+T GV
Sbjct:   161 PVAVLADSDKLQVGQWAVAIGNPFGLDRTVTVGV 194

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|SPO_1625 SPO_1625 "periplasmic serine protease, DO/DeqQ family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 46/108 (42%), Positives = 62/108 (57%)

Query:   119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAY 178
             +G GSGF+ D  G+IVTN HVV        G  R  V L D +   F    ++VG DP  
Sbjct:    99 QGLGSGFILDSEGYIVTNNHVV-------DGADRVTVRLSDDRE--F--TAQVVGTDPLT 147

Query:   179 DLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             DLA+L+++  G  L  V LG S  +RVG+   A+GNP+G   T+TTG+
Sbjct:   148 DLALLRIEA-GEALPAVSLGDSDAIRVGEDVVAVGNPFGLSSTVTTGI 194

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0030288 "outer membrane-bounded periplasmic space" evidence=ISS

UNIPROTKB|P72780 hhoA "Putative serine protease HhoA" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 44/110 (40%), Positives = 64/110 (58%)

Query:   117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP 176
             ++ G GSGF+ D  G I+TN HVV        G  +  V+L D  G  F  +G++ G D 
Sbjct:   107 RIAGQGSGFIIDNSGIILTNAHVV-------DGASKVVVTLRD--GRTF--DGQVRGTDE 155

Query:   177 AYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
               DLAV+K++ +G  L    LGTS +L+VG    A+GNP G ++T+T G+
Sbjct:   156 VTDLAVVKIEPQGSALPVAPLGTSSNLQVGDWAIAVGNPVGLDNTVTLGI 205

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|O53896 pepD "Probable serine protease PepD (Serine proteinase) (MTB32B)" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 179 (68.1 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 45/120 (37%), Positives = 67/120 (55%)

Query:   108 LMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYR 167
             +++++ +  +    GSG +    G I+TN HV+A  A    G    K ++  + G     
Sbjct:   167 VVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRT--A 224

Query:   168 EGKMVGCDPAYDLAVLKVD-VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
                +VG DP  D+AV++V  V G  L P+ LG+S DLRVGQ   AIG+P G E T+TTG+
Sbjct:   225 PFTVVGADPTSDIAVVRVQGVSG--LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGI 282

GO:0005576 "extracellular region" evidence=IDA

GO:0006508 "proteolysis" evidence=IDA

GO:0006950 "response to stress" evidence=IDA

GO:0008236 "serine-type peptidase activity" evidence=IDA

GO:0009405 "pathogenesis" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IDA

TIGR_CMR|APH_1148 APH_1148 "protease DO family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 178 (67.7 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 48/110 (43%), Positives = 61/110 (55%)

Query:   117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP 176
             KV   GSGF+ D+ G IVTNYHV+A            +V   D    G   + K++G DP
Sbjct:   106 KVISLGSGFIIDESGLIVTNYHVIANS-------QEIQVKFSD----GTTAKAKVLGQDP 154

Query:   177 AYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
               DLAVLKVDV   EL  V LG S D  VG+   AIGNP+G   +++ G+
Sbjct:   155 KTDLAVLKVDVAK-ELVSVKLGNSDDALVGEWVLAIGNPFGLGGSVSVGI 203

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0030288 "outer membrane-bounded periplasmic space" evidence=ISS

UNIPROTKB|P18584 htrA "Probable periplasmic serine endoprotease DegP-like" [Chlamydia trachomatis D/UW-3/CX (taxid:272561)]

 Score = 169 (64.5 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 42/105 (40%), Positives = 61/105 (58%)

Query:   122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
             G+GF+  + G++VTN+HVV     D   +H   V+L D  G  +    K+VG DP  DLA
Sbjct:   127 GTGFIVSEDGYVVTNHHVVE----DAGKIH---VTLHD--GQKY--TAKIVGLDPKTDLA 175

Query:   182 VLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             V+K+  E  +L  +  G S  L++G    AIGNP+G + T+T GV
Sbjct:   176 VIKIQAE--KLPFLTFGNSDQLQIGDWAIAIGNPFGLQATVTVGV 218

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0030288 "outer membrane-bounded periplasmic space" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SEL7	DEGP5_ARATH	3, ., 4, ., 2, 1, ., -	0.7133	0.6375	0.4520	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028323001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (313 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	5e-24
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	9e-23
TIGR02038	351	TIGR02038, protease_degS, periplasmic serine pepet	4e-15
pfam13365	138	pfam13365, Trypsin_2, Trypsin-like peptidase domai	6e-11
PRK10942	473	PRK10942, PRK10942, serine endoprotease; Provision	9e-10
PRK10898	353	PRK10898, PRK10898, serine endoprotease; Provision	4e-09
PRK10139	455	PRK10139, PRK10139, serine endoprotease; Provision	1e-08

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 98.4 bits (246), Expect = 5e-24
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 31/164 (18%)

Query: 79  VQLFQETSPSVVSIQDLELSKNPKSTSSELMLVD----------------GEYAKVEGTG 122
             L ++ +P+VV+I    +    K  +    L                      KV G G
Sbjct: 4   APLVEKVAPAVVNI---SVEGTVKRRNRPPALPPFFRQFFGDDMPDFPRQQREQKVRGLG 60

Query: 123 SGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAV 182
           SG +    G+++TN HVV   A +        V+L D    G   + K+VG DP  D+AV
Sbjct: 61  SGVIISADGYVLTNNHVVDG-ADEI------TVTLSD----GREFKAKLVGKDPRTDIAV 109

Query: 183 LKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           LK+D +   L  + LG S  LRVG    AIGNP+G   T+T+G+
Sbjct: 110 LKIDAKK-NLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTSGI 152

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 94.2 bits (234), Expect = 9e-23
 Identities = 58/169 (34%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 59  FRSAIALQ-QKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAK 117
             +AIA          +        ++ +P+VVSI     +    +        D     
Sbjct: 15  LIAAIAGGRALTSAAGQRLSFATAVEKVAPAVVSI-----ATGLTAKLRSFFPSDPPLRS 69

Query: 118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
            EG GSGF+    G+IVTN HV+A       G     V+L D    G     K+VG DP 
Sbjct: 70  AEGLGSGFIISSDGYIVTNNHVIA-------GAEEITVTLAD----GREVPAKLVGKDPI 118

Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            DLAVLK+D  G  L  + LG S  LRVG    AIGNP+G   T+T+G+
Sbjct: 119 SDLAVLKIDGAG-GLPVIALGDSDKLRVGDVVVAIGNPFGLGQTVTSGI 166

Length = 347

>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 24/141 (17%)

Query: 86  SPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLAT 145
           +P+VV+I +  +S+N  +  S           ++G GSG +  K G+I+TNYHV+ K   
Sbjct: 55  APAVVNIYNRSISQNSLNQLS-----------IQGLGSGVIMSKEGYILTNYHVIKK--- 100

Query: 146 DTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRV 205
                 +  V+L D  G  F  E ++VG DP  DLAVLK  +EG  L  + +       V
Sbjct: 101 ----ADQIVVALQD--GRKF--EAELVGSDPLTDLAVLK--IEGDNLPTIPVNLDRPPHV 150

Query: 206 GQSCFAIGNPYGFEDTLTTGV 226
           G    AIGNPY    T+T G+
Sbjct: 151 GDVVLAIGNPYNLGQTITQGI 171

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E) [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 351

>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain

 Score = 58.0 bits (140), Expect = 6e-11
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
           G+GFV    G I+TN HVV             ++ +    G       ++V  DP  DLA
Sbjct: 1   GTGFVVGSDGLILTNAHVVEDADAS-------EIEVVLPDGGRV--PAEVVAADPDLDLA 51

Query: 182 VLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF 228
           +LKVD  G  L    L  S    +G S   +G P G     + G   
Sbjct: 52  LLKVD--GPLLPAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGGG 96

This family includes trypsin like peptidase domains. Length = 138

>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional

 Score = 57.5 bits (139), Expect = 9e-10
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 113 GEYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKM 171
           G+  K    GSG + D   G++VTN HVV   AT      + KV L D  G  F  + K+
Sbjct: 104 GQQQKFMALGSGVIIDADKGYVVTNNHVVDN-AT------KIKVQLSD--GRKF--DAKV 152

Query: 172 VGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           VG DP  D+A++++      L  + +  S  LRVG    AIGNPYG  +T+T+G+
Sbjct: 153 VGKDPRSDIALIQL-QNPKNLTAIKMADSDALRVGDYTVAIGNPYGLGETVTSGI 206

Length = 473

>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 15/106 (14%)

Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
           GSG + D+ G+I+TN HV+       +   +  V+L D +    + E  +VG D   DLA
Sbjct: 80  GSGVIMDQRGYILTNKHVI-------NDADQIIVALQDGR---VF-EALLVGSDSLTDLA 128

Query: 182 VLKVDVEGFELKPVV-LGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           VLK++       PV+ +       +G    AIGNPY    T+T G+
Sbjct: 129 VLKINATNL---PVIPINPKRVPHIGDVVLAIGNPYNLGQTITQGI 171

Length = 353

>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 19/153 (12%)

Query: 81  LFQETSPSVVSIQDLELSKNPKSTSSELM------LVDGEYAKVEGTGSGFVWDKF-GHI 133
           + ++  P+VVS++    +   +    E        L D      EG GSG + D   G++
Sbjct: 45  MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIDAAKGYV 104

Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
           +TN HV+             K+S+    G  F  + K++G D   D+A+L++     +L 
Sbjct: 105 LTNNHVIN---------QAQKISIQLNDGREF--DAKLIGSDDQSDIALLQIQ-NPSKLT 152

Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 153 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 185

Length = 455

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PRK10139	455	serine endoprotease; Provisional	99.96
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	99.96
PRK10898	353	serine endoprotease; Provisional	99.95
PRK10942	473	serine endoprotease; Provisional	99.95
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.93
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	99.85
KOG1320	473	consensus Serine protease [Posttranslational modif	99.61
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	99.09
KOG1421	955	consensus Predicted signaling-associated protein (	98.73
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	98.17
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	97.98
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	97.9
PF10459	698	Peptidase_S46: Peptidase S46; InterPro: IPR019500	97.65
KOG1320	473	consensus Serine protease [Posttranslational modif	97.54
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	95.56
PF00863	235	Peptidase_C4: Peptidase family C4 This family belo	94.79
KOG1421	955	consensus Predicted signaling-associated protein (	92.47
PF05579	297	Peptidase_S32: Equine arteritis virus serine endop	88.18
PF03510	105	Peptidase_C24: 2C endopeptidase (C24) cysteine pro	82.22

>PRK10139 serine endoprotease; Provisional

Probab=99.96  E-value=3.4e-28  Score=226.12  Aligned_cols=141  Identities=28%  Similarity=0.478  Sum_probs=115.5

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhcc------ccccccceEEEEEEcC-CcEEEEccccccccccCCCC
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDG------EYAKVEGTGSGFVWDK-FGHIVTNYHVVAKLATDTSG  149 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~GSGfiI~~-~G~IlTn~HVv~~~~~~~~~  149 (229)
                      ++.++++++.||||.|.+......+....+.|..+++      ......+.||||||++ +||||||+|||+       +
T Consensus        41 ~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSG~ii~~~~g~IlTn~HVv~-------~  113 (455)
T PRK10139         41 SLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIDAAKGYVLTNNHVIN-------Q  113 (455)
T ss_pred             cHHHHHHHhCCcEEEEEEEEeecccccCchhHHHhccccCCccccccccceEEEEEEECCCCEEEeChHHhC-------C
Confidence            6899999999999999986654322111111211111      1233468999999985 799999999999       8


Q ss_pred             cceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          150 LHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       150 ~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      ++.+.|++.|++    +|.|++++.|+.+||||||++.. .++++++|++++.+++||+|++||||+|+..+++.||||+
T Consensus       114 a~~i~V~~~dg~----~~~a~vvg~D~~~DlAvlkv~~~-~~l~~~~lg~s~~~~~G~~V~aiG~P~g~~~tvt~GivS~  188 (455)
T PRK10139        114 AQKISIQLNDGR----EFDAKLIGSDDQSDIALLQIQNP-SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIISA  188 (455)
T ss_pred             CCEEEEEECCCC----EEEEEEEEEcCCCCEEEEEecCC-CCCceeEecCccccCCCCEEEEEecCCCCCCceEEEEEcc
Confidence            899999998754    78999999999999999999843 5799999999999999999999999999999999999985

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=99.96  E-value=2.3e-27  Score=214.17  Aligned_cols=134  Identities=34%  Similarity=0.527  Sum_probs=114.8

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcc
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLH  151 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~  151 (229)
                      .+.+..+.++++++.||||+|++.....+           ........+.||||||+++||||||+|||+       +++
T Consensus        41 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~-----------~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~-------~~~  102 (351)
T TIGR02038        41 NTVEISFNKAVRRAAPAVVNIYNRSISQN-----------SLNQLSIQGLGSGVIMSKEGYILTNYHVIK-------KAD  102 (351)
T ss_pred             cccchhHHHHHHhcCCcEEEEEeEecccc-----------ccccccccceEEEEEEeCCeEEEecccEeC-------CCC
Confidence            34455799999999999999998654321           011233467899999999999999999999       888


Q ss_pred             eEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          152 RCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       152 ~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.|++.|+.    .+.|+++++|+.+||||||++..  .++++++++++.+++||+|++||||+|+..+++.|+||+
T Consensus       103 ~i~V~~~dg~----~~~a~vv~~d~~~DlAvlkv~~~--~~~~~~l~~s~~~~~G~~V~aiG~P~~~~~s~t~GiIs~  174 (351)
T TIGR02038       103 QIVVALQDGR----KFEAELVGSDPLTDLAVLKIEGD--NLPTIPVNLDRPPHVGDVVLAIGNPYNLGQTITQGIISA  174 (351)
T ss_pred             EEEEEECCCC----EEEEEEEEecCCCCEEEEEecCC--CCceEeccCcCccCCCCEEEEEeCCCCCCCcEEEEEEEe
Confidence            9999998854    78999999999999999999853  589999999999999999999999999999999999985

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=99.95  E-value=2.2e-27  Score=214.48  Aligned_cols=133  Identities=29%  Similarity=0.452  Sum_probs=113.9

Q ss_pred             cchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcce
Q 027022           73 LEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHR  152 (229)
Q Consensus        73 ~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~  152 (229)
                      ..+..+.++++++.||||.|.+.....           .........+.||||+|+++||||||+|||+       +++.
T Consensus        42 ~~~~~~~~~~~~~~psvV~v~~~~~~~-----------~~~~~~~~~~~GSGfvi~~~G~IlTn~HVv~-------~a~~  103 (353)
T PRK10898         42 ETPASYNQAVRRAAPAVVNVYNRSLNS-----------TSHNQLEIRTLGSGVIMDQRGYILTNKHVIN-------DADQ  103 (353)
T ss_pred             cccchHHHHHHHhCCcEEEEEeEeccc-----------cCcccccccceeeEEEEeCCeEEEecccEeC-------CCCE
Confidence            334578999999999999999865321           0111234457899999999999999999999       7889


Q ss_pred             EEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          153 CKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       153 ~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      +.|++.|+.    +|.|+++++|+.+||||||++.  .++++++|++++.+++||+|+++|||+|+..+++.|+||+
T Consensus       104 i~V~~~dg~----~~~a~vv~~d~~~DlAvl~v~~--~~l~~~~l~~~~~~~~G~~V~aiG~P~g~~~~~t~Giis~  174 (353)
T PRK10898        104 IIVALQDGR----VFEALLVGSDSLTDLAVLKINA--TNLPVIPINPKRVPHIGDVVLAIGNPYNLGQTITQGIISA  174 (353)
T ss_pred             EEEEeCCCC----EEEEEEEEEcCCCCEEEEEEcC--CCCCeeeccCcCcCCCCCEEEEEeCCCCcCCCcceeEEEe
Confidence            999998854    7899999999999999999984  4689999999999999999999999999999999999984

>PRK10942 serine endoprotease; Provisional

Probab=99.95  E-value=1.6e-26  Score=215.79  Aligned_cols=141  Identities=33%  Similarity=0.470  Sum_probs=114.3

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccCC---C-CCcchhhhh---c---c-------------------ccccccceEEEEEE
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKNP---K-STSSELMLV---D---G-------------------EYAKVEGTGSGFVW  127 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~~---~-~~~~~~~~~---~---~-------------------~~~~~~~~GSGfiI  127 (229)
                      ++.++++++.||||+|++......+   . .....||+.   .   +                   ......+.||||||
T Consensus        39 ~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ii  118 (473)
T PRK10942         39 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRQFQQFFGDNSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII  118 (473)
T ss_pred             cHHHHHHHhCCceEEEEEEEeccccCCCCChhHHHhhcccccccccccccccccccccccccccccccccccceEEEEEE
Confidence            5999999999999999986644321   0 011222211   0   0                   01123578999999


Q ss_pred             cC-CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCC
Q 027022          128 DK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVG  206 (229)
Q Consensus       128 ~~-~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G  206 (229)
                      ++ +||||||+|||.       +++.++|++.|+.    .|.|++++.|+.+||||||++. ..++++++|++++.+++|
T Consensus       119 ~~~~G~IlTn~HVv~-------~a~~i~V~~~dg~----~~~a~vv~~D~~~DlAvlki~~-~~~l~~~~lg~s~~l~~G  186 (473)
T PRK10942        119 DADKGYVVTNNHVVD-------NATKIKVQLSDGR----KFDAKVVGKDPRSDIALIQLQN-PKNLTAIKMADSDALRVG  186 (473)
T ss_pred             ECCCCEEEeChhhcC-------CCCEEEEEECCCC----EEEEEEEEecCCCCEEEEEecC-CCCCceeEecCccccCCC
Confidence            86 599999999999       8899999998754    7899999999999999999974 357999999999999999


Q ss_pred             CeEEEEecCCCCCCceeEeEEcC
Q 027022          207 QSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       207 ~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      |+|++||||+|+..+++.||||+
T Consensus       187 ~~V~aiG~P~g~~~tvt~GiVs~  209 (473)
T PRK10942        187 DYTVAIGNPYGLGETVTSGIVSA  209 (473)
T ss_pred             CEEEEEcCCCCCCcceeEEEEEE
Confidence            99999999999999999999985

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.93  E-value=4.4e-25  Score=204.06  Aligned_cols=140  Identities=36%  Similarity=0.514  Sum_probs=114.6

Q ss_pred             HHHHHHHhCCceEEEEeeeeccCCCC---C---cchhhhh-c------cccccccceEEEEEEcCCcEEEEccccccccc
Q 027022           78 VVQLFQETSPSVVSIQDLELSKNPKS---T---SSELMLV-D------GEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLA  144 (229)
Q Consensus        78 ~~~~~~~~~psVV~I~~~~~~~~~~~---~---~~~~~~~-~------~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~  144 (229)
                      +.++++++.||||.|.+.........   .   ...||+. .      .......+.||||+|+++||||||+|||.   
T Consensus         3 ~~~~~~~~~p~vv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfii~~~G~IlTn~Hvv~---   79 (428)
T TIGR02037         3 FAPLVEKVAPAVVNISVEGTVKRRNRPPALPPFFRQFFGDDMPNFPRQQRERKVRGLGSGVIISADGYILTNNHVVD---   79 (428)
T ss_pred             HHHHHHHhCCceEEEEEEEEecccCCCcccchhHHHhhcccccCcccccccccccceeeEEEECCCCEEEEcHHHcC---
Confidence            67999999999999998664432110   0   1122211 0      01234568899999999999999999999   


Q ss_pred             cCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeE
Q 027022          145 TDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTT  224 (229)
Q Consensus       145 ~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~  224 (229)
                          +++.+.|++.+++    .|.|++++.|+.+||||||++.. .++++++|++++.+++||+|+++|||+|+..+++.
T Consensus        80 ----~~~~i~V~~~~~~----~~~a~vv~~d~~~DlAllkv~~~-~~~~~~~l~~~~~~~~G~~v~aiG~p~g~~~~~t~  150 (428)
T TIGR02037        80 ----GADEITVTLSDGR----EFKAKLVGKDPRTDIAVLKIDAK-KNLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTS  150 (428)
T ss_pred             ----CCCeEEEEeCCCC----EEEEEEEEecCCCCEEEEEecCC-CCceEEEccCCCCCCCCCEEEEEECCCcCCCcEEE
Confidence                8889999998754    78999999999999999999853 57999999999999999999999999999999999


Q ss_pred             eEEcC
Q 027022          225 GVTFQ  229 (229)
Q Consensus       225 GiVSa  229 (229)
                      |+||+
T Consensus       151 G~vs~  155 (428)
T TIGR02037       151 GIVSA  155 (428)
T ss_pred             EEEEe
Confidence            99984

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.6e-20  Score=169.09  Aligned_cols=137  Identities=41%  Similarity=0.574  Sum_probs=113.5

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEE
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKV  155 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V  155 (229)
                      ..+.++++++.|+||++........     ..|+..........+.||||+++++|||+||+|||.       +++++.+
T Consensus        33 ~~~~~~~~~~~~~vV~~~~~~~~~~-----~~~~~~~~~~~~~~~~gSg~i~~~~g~ivTn~hVi~-------~a~~i~v  100 (347)
T COG0265          33 LSFATAVEKVAPAVVSIATGLTAKL-----RSFFPSDPPLRSAEGLGSGFIISSDGYIVTNNHVIA-------GAEEITV  100 (347)
T ss_pred             cCHHHHHHhcCCcEEEEEeeeeecc-----hhcccCCcccccccccccEEEEcCCeEEEecceecC-------CcceEEE
Confidence            5789999999999999998665431     111100000011158999999999999999999999       8899999


Q ss_pred             EEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          156 SLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       156 ~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.|  |+  ++.++++++|+..|||+||++.... ++.+.++++..+++||++++||||+|+..+++.||||+
T Consensus       101 ~l~d--g~--~~~a~~vg~d~~~dlavlki~~~~~-~~~~~~~~s~~l~vg~~v~aiGnp~g~~~tvt~Givs~  169 (347)
T COG0265         101 TLAD--GR--EVPAKLVGKDPISDLAVLKIDGAGG-LPVIALGDSDKLRVGDVVVAIGNPFGLGQTVTSGIVSA  169 (347)
T ss_pred             EeCC--CC--EEEEEEEecCCccCEEEEEeccCCC-CceeeccCCCCcccCCEEEEecCCCCcccceeccEEec
Confidence            9966  44  8899999999999999999986433 89999999999999999999999999999999999985

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2.6e-15  Score=138.57  Aligned_cols=148  Identities=32%  Similarity=0.308  Sum_probs=117.0

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCC---
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTS---  148 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~---  148 (229)
                      ......++++++++.+|+|.|+...--.      +  +..+....-....||||||+.+|+|+||+||+........   
T Consensus       124 ~k~~~~v~~~~~~cd~Avv~Ie~~~f~~------~--~~~~e~~~ip~l~~S~~Vv~gd~i~VTnghV~~~~~~~y~~~~  195 (473)
T KOG1320|consen  124 RKYKAFVAAVFEECDLAVVYIESEEFWK------G--MNPFELGDIPSLNGSGFVVGGDGIIVTNGHVVRVEPRIYAHSS  195 (473)
T ss_pred             hhhhhhHHHhhhcccceEEEEeeccccC------C--CcccccCCCcccCccEEEEcCCcEEEEeeEEEEEEeccccCCC
Confidence            4556778899999999999999633211      0  1112223445678999999999999999999996433211   


Q ss_pred             -CcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEE
Q 027022          149 -GLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT  227 (229)
Q Consensus       149 -~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiV  227 (229)
                       ..-.+.|...++.|+  .+.+.+++.|+..|+|+++++.++..+++++++-+..++.|+++.++|+||++.++++.|+|
T Consensus       196 ~~l~~vqi~aa~~~~~--s~ep~i~g~d~~~gvA~l~ik~~~~i~~~i~~~~~~~~~~G~~~~a~~~~f~~~nt~t~g~v  273 (473)
T KOG1320|consen  196 TVLLRVQIDAAIGPGN--SGEPVIVGVDKVAGVAFLKIKTPENILYVIPLGVSSHFRTGVEVSAIGNGFGLLNTLTQGMV  273 (473)
T ss_pred             cceeeEEEEEeecCCc--cCCCeEEccccccceEEEEEecCCcccceeecceeeeecccceeeccccCceeeeeeeeccc
Confidence             112477888887666  67999999999999999999866544899999999999999999999999999999999999


Q ss_pred             cC
Q 027022          228 FQ  229 (229)
Q Consensus       228 Sa  229 (229)
                      |+
T Consensus       274 s~  275 (473)
T KOG1320|consen  274 SG  275 (473)
T ss_pred             cc
Confidence            74

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=99.09  E-value=3.5e-10  Score=85.18  Aligned_cols=61  Identities=36%  Similarity=0.489  Sum_probs=46.7

Q ss_pred             EEEEEEcCCcEEEEccccccccccCC-CCcceEEEEEecCCCCeeEEe--EEEEEEcCC-CcEEEEEEc
Q 027022          122 GSGFVWDKFGHIVTNYHVVAKLATDT-SGLHRCKVSLFDAKGNGFYRE--GKMVGCDPA-YDLAVLKVD  186 (229)
Q Consensus       122 GSGfiI~~~G~IlTn~HVv~~~~~~~-~~~~~~~V~~~~~~g~~~~~~--A~vv~~d~~-~DlAvLki~  186 (229)
                      ||||+|+++||||||+||+.+..... .....+.+...++  .  .+.  +++++.|+. .|+|||+++
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~D~All~v~   65 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDWNDGKQPDNSSVEVVFPDG--R--RVPPVAEVVYFDPDDYDLALLKVD   65 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCCTT--G-TCSEEEEEETTS--C--EEETEEEEEEEETT-TTEEEEEES
T ss_pred             CEEEEEcCCceEEEchhheecccccccCCCCEEEEEecCC--C--EEeeeEEEEEECCccccEEEEEEe
Confidence            89999999999999999999542110 0234566666554  3  556  999999999 999999997

...

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=98.73  E-value=2.9e-08  Score=94.44  Aligned_cols=131  Identities=25%  Similarity=0.253  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcC-CcEEEEccccccccccCCCCcceE
Q 027022           75 EDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRC  153 (229)
Q Consensus        75 ~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~-~G~IlTn~HVv~~~~~~~~~~~~~  153 (229)
                      ...+...+.++-++||.|+..+...            .+......+.++||++++ .||||||+||+..      +.-..
T Consensus        51 ~e~w~~~ia~VvksvVsI~~S~v~~------------fdtesag~~~atgfvvd~~~gyiLtnrhvv~p------gP~va  112 (955)
T KOG1421|consen   51 SEDWRNTIANVVKSVVSIRFSAVRA------------FDTESAGESEATGFVVDKKLGYILTNRHVVAP------GPFVA  112 (955)
T ss_pred             hhhhhhhhhhhcccEEEEEehheee------------cccccccccceeEEEEecccceEEEeccccCC------CCcee
Confidence            3488999999999999999866543            223344677899999997 5999999999995      44455


Q ss_pred             EEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCC---CccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          154 KVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGF---ELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       154 ~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~---~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      .+.+.+..    ..+--.++.|+-+|+.+++.+....   .+..+.+. .+.-++|.+++.+||-.|...++-.|.+|
T Consensus       113 ~avf~n~e----e~ei~pvyrDpVhdfGf~r~dps~ir~s~vt~i~la-p~~akvgseirvvgNDagEklsIlagflS  185 (955)
T KOG1421|consen  113 SAVFDNHE----EIEIYPVYRDPVHDFGFFRYDPSTIRFSIVTEICLA-PELAKVGSEIRVVGNDAGEKLSILAGFLS  185 (955)
T ss_pred             EEEecccc----cCCcccccCCchhhcceeecChhhcceeeeeccccC-ccccccCCceEEecCCccceEEeehhhhh
Confidence            66665433    4566778999999999999984322   24555554 34579999999999988877777777655

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=5.6e-05  Score=62.07  Aligned_cols=92  Identities=27%  Similarity=0.344  Sum_probs=63.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec-----CCCCeeEEeEEEEE----EcC---CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD-----AKGNGFYREGKMVG----CDP---AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~-----~~g~~~~~~A~vv~----~d~---~~DlAvLki~  186 (229)
                      ...++|++|+++ +|||++|++.       +.+++.+.+..     .++....+..+-+.    ++.   ..|+|||+++
T Consensus        24 ~~~C~G~li~~~-~vLTaahC~~-------~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h~~~~~~~~~~DiAll~L~   95 (220)
T PF00089_consen   24 RFFCTGTLISPR-WVLTAAHCVD-------GASDIKVRLGTYSIRNSDGSEQTIKVSKIIIHPKYDPSTYDNDIALLKLD   95 (220)
T ss_dssp             EEEEEEEEEETT-EEEEEGGGHT-------SGGSEEEEESESBTTSTTTTSEEEEEEEEEEETTSBTTTTTTSEEEEEES
T ss_pred             CeeEeEEecccc-cccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567999999984 9999999999       54556664432     12211123332222    233   4699999998


Q ss_pred             cC---CCCccceEcCCC-CCCCCCCeEEEEecCCCC
Q 027022          187 VE---GFELKPVVLGTS-HDLRVGQSCFAIGNPYGF  218 (229)
Q Consensus       187 ~~---~~~~~~l~lg~s-~~~~~G~~V~aiG~P~G~  218 (229)
                      .+   ...+.++.+... ..++.|+.+.++|++...
T Consensus        96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~  131 (220)
T PF00089_consen   96 RPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTS  131 (220)
T ss_dssp             SSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSS
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            65   345677778762 347999999999999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=97.98  E-value=0.00023  Score=58.81  Aligned_cols=95  Identities=21%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCC-----eeEEeEEEEEEc-------CCCcEEEEEE
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGN-----GFYREGKMVGCD-------PAYDLAVLKV  185 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~-----~~~~~A~vv~~d-------~~~DlAvLki  185 (229)
                      .....+|++|++ .+|||++|.+.+.     ....+.|.+...+..     ...+..+-+...       ...|||||++
T Consensus        23 ~~~~C~GtlIs~-~~VLTaAhC~~~~-----~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAll~L   96 (232)
T cd00190          23 GRHFCGGSLISP-RWVLTAAHCVYSS-----APSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKL   96 (232)
T ss_pred             CcEEEEEEEeeC-CEEEECHHhcCCC-----CCccEEEEeCcccccCCCCceEEEEEEEEEECCCCCCCCCcCCEEEEEE
Confidence            346799999997 6999999999842     124566665322211     112233333332       3579999999


Q ss_pred             ccCC---CCccceEcCCCC-CCCCCCeEEEEecCCCC
Q 027022          186 DVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYGF  218 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G~  218 (229)
                      +.+-   ..+.|+.|.... .+..|+.+++.|+....
T Consensus        97 ~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~  133 (232)
T cd00190          97 KRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTS  133 (232)
T ss_pred             CCcccCCCcccceECCCccccCCCCCEEEEEeCCcCC
Confidence            8542   226778886654 68899999999987653

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=97.90  E-value=0.00014  Score=60.28  Aligned_cols=94  Identities=18%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCe----eEEeEEEEE-------EcCCCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNG----FYREGKMVG-------CDPAYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~----~~~~A~vv~-------~d~~~DlAvLki~~  187 (229)
                      ....+|.+|++ .+|||++|.+.+.     ....+.|.+...+...    ..+...-+.       .....|||||+++.
T Consensus        25 ~~~C~GtlIs~-~~VLTaahC~~~~-----~~~~~~v~~g~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~DiAll~L~~   98 (229)
T smart00020       25 RHFCGGSLISP-RWVLTAAHCVYGS-----DPSNIRVRLGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKS   98 (229)
T ss_pred             CcEEEEEEecC-CEEEECHHHcCCC-----CCcceEEEeCcccCCCCCCceEEeeEEEEECCCCCCCCCcCCEEEEEECc
Confidence            56799999997 6999999999942     1246677775432211    123333333       23467999999985


Q ss_pred             C---CCCccceEcCCC-CCCCCCCeEEEEecCCCC
Q 027022          188 E---GFELKPVVLGTS-HDLRVGQSCFAIGNPYGF  218 (229)
Q Consensus       188 ~---~~~~~~l~lg~s-~~~~~G~~V~aiG~P~G~  218 (229)
                      +   ...+.++.|... ..+..|+.+.+.|++...
T Consensus        99 ~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~  133 (229)
T smart00020       99 PVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTS  133 (229)
T ss_pred             ccCCCCceeeccCCCcccccCCCCEEEEEeCCCCC
Confidence            4   123667777553 367889999999987654

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=0.00036  Score=68.55  Aligned_cols=24  Identities=29%  Similarity=0.201  Sum_probs=21.3

Q ss_pred             ceEEEEEEcCCcEEEEcccccccc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKL  143 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~  143 (229)
                      +.+||-||+++|+|+||+|++-+.
T Consensus        47 gGCSgsfVS~~GLvlTNHHC~~~~   70 (698)
T PF10459_consen   47 GGCSGSFVSPDGLVLTNHHCGYGA   70 (698)
T ss_pred             CceeEEEEcCCceEEecchhhhhH
Confidence            359999999999999999998744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=7.6e-05  Score=69.70  Aligned_cols=128  Identities=23%  Similarity=0.217  Sum_probs=89.7

Q ss_pred             HHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC
Q 027022           81 LFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA  160 (229)
Q Consensus        81 ~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~  160 (229)
                      .++....+++.+....++.       .....|....+....||||.+.. ..++||+|++....    +.....+. .. 
T Consensus        55 ~~~~~~~s~~~v~~~~~~~-------~~~~pw~~~~q~~~~~s~f~i~~-~~lltn~~~v~~~~----~~~~v~v~-~~-  120 (473)
T KOG1320|consen   55 VVDLALQSVVKVFSVSTEP-------SSVLPWQRTRQFSSGGSGFAIYG-KKLLTNAHVVAPNN----DHKFVTVK-KH-  120 (473)
T ss_pred             CccccccceeEEEeecccc-------cccCcceeeehhcccccchhhcc-cceeecCccccccc----cccccccc-cC-
Confidence            3455566888888755443       22222444457788999999986 68999999999432    23333333 33 


Q ss_pred             CCCeeEEeEEEEEEcCCCcEEEEEEccC--CCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          161 KGNGFYREGKMVGCDPAYDLAVLKVDVE--GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       161 ~g~~~~~~A~vv~~d~~~DlAvLki~~~--~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                       |....|.|++...-.+.|+|+|.++..  +....++.+++  -+.-.+-++++|   |...++|-|.|+
T Consensus       121 -gs~~k~~~~v~~~~~~cd~Avv~Ie~~~f~~~~~~~e~~~--ip~l~~S~~Vv~---gd~i~VTnghV~  184 (473)
T KOG1320|consen  121 -GSPRKYKAFVAAVFEECDLAVVYIESEEFWKGMNPFELGD--IPSLNGSGFVVG---GDGIIVTNGHVV  184 (473)
T ss_pred             -CCchhhhhhHHHhhhcccceEEEEeeccccCCCcccccCC--CcccCccEEEEc---CCcEEEEeeEEE
Confidence             444478899999999999999999853  33333455544  577888899999   888899999986

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=95.56  E-value=0.14  Score=44.54  Aligned_cols=94  Identities=13%  Similarity=0.053  Sum_probs=51.4

Q ss_pred             EEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe--cCCCC-eeEEeEEEEEEcC----CCcEEEEEEccCC-----
Q 027022          122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF--DAKGN-GFYREGKMVGCDP----AYDLAVLKVDVEG-----  189 (229)
Q Consensus       122 GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~--~~~g~-~~~~~A~vv~~d~----~~DlAvLki~~~~-----  189 (229)
                      .++|+|++ ..||||.|++.....   +-.++.+..+  .++|. .+.+........+    +.|.+...+..-.     
T Consensus        66 ~~~~lI~p-ntvLTa~Hc~~s~~~---G~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~v~~~~~~~g~  141 (251)
T COG3591          66 TAATLIGP-NTVLTAGHCIYSPDY---GEDDIAAAPPGVNSDGGPFYGITKIEIRVYPGELYKEDGASYDVGEAALESGI  141 (251)
T ss_pred             eeEEEEcC-ceEEEeeeEEecCCC---ChhhhhhcCCcccCCCCCCCceeeEEEEecCCceeccCCceeeccHHHhccCC
Confidence            45699998 699999999995431   1122222221  11222 1222222222222    3466666653211     


Q ss_pred             ---CCccceEcCCCCCCCCCCeEEEEecCCCCC
Q 027022          190 ---FELKPVVLGTSHDLRVGQSCFAIGNPYGFE  219 (229)
Q Consensus       190 ---~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~  219 (229)
                         .......+......+.+|.+-.+|||.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk~  174 (251)
T COG3591         142 NIGDVVNYLKRNTASEAKANDRITVIGYPGDKP  174 (251)
T ss_pred             CccccccccccccccccccCceeEEEeccCCCC
Confidence               112222333456799999999999998855

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification

Probab=94.79  E-value=0.29  Score=42.11  Aligned_cols=82  Identities=13%  Similarity=0.173  Sum_probs=46.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEE-----EEEEcCCCcEEEEEEccCCCCccc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGK-----MVGCDPAYDLAVLKVDVEGFELKP  194 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~-----vv~~d~~~DlAvLki~~~~~~~~~  194 (229)
                      ..-=||..++  |||||+|..+.      +...+.|....  |   .|...     -+..=+..||.++|..   .++||
T Consensus        32 ~~l~gigyG~--~iItn~HLf~~------nng~L~i~s~h--G---~f~v~nt~~lkv~~i~~~DiviirmP---kDfpP   95 (235)
T PF00863_consen   32 RSLYGIGYGS--YIITNAHLFKR------NNGELTIKSQH--G---EFTVPNTTQLKVHPIEGRDIVIIRMP---KDFPP   95 (235)
T ss_dssp             EEEEEEEETT--EEEEEGGGGSS------TTCEEEEEETT--E---EEEECEGGGSEEEE-TCSSEEEEE-----TTS--
T ss_pred             EEEEEEeECC--EEEEChhhhcc------CCCeEEEEeCc--e---EEEcCCccccceEEeCCccEEEEeCC---cccCC
Confidence            3445677765  99999999985      33457776655  3   23222     2445568999999995   34666


Q ss_pred             eEcC-CCCCCCCCCeEEEEecCCC
Q 027022          195 VVLG-TSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       195 l~lg-~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-- ....++.||.|..+|.=+-
T Consensus        96 f~~kl~FR~P~~~e~v~mVg~~fq  119 (235)
T PF00863_consen   96 FPQKLKFRAPKEGERVCMVGSNFQ  119 (235)
T ss_dssp             --S---B----TT-EEEEEEEECS
T ss_pred             cchhhhccCCCCCCEEEEEEEEEE
Confidence            5431 2457999999999998554

; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=92.47  E-value=0.27  Score=48.11  Aligned_cols=87  Identities=18%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             ccceEEEEEEcC-CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceE
Q 027022          118 VEGTGSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVV  196 (229)
Q Consensus       118 ~~~~GSGfiI~~-~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~  196 (229)
                      ....|||.|++. .|+++++..+|.-      +.....|++.|..    ...|++..-++...+|.+|.+..  ..-.++
T Consensus       548 ~i~kgt~~i~d~~~g~~vvsr~~vp~------d~~d~~vt~~dS~----~i~a~~~fL~~t~n~a~~kydp~--~~~~~k  615 (955)
T KOG1421|consen  548 DIYKGTALIMDTSKGLGVVSRSVVPS------DAKDQRVTEADSD----GIPANVSFLHPTENVASFKYDPA--LEVQLK  615 (955)
T ss_pred             hhhcCceEEEEccCCceeEecccCCc------hhhceEEeecccc----cccceeeEecCccceeEeccChh--Hhhhhc
Confidence            456799999986 5999999999984      7888999998876    56899999999999999999843  234556


Q ss_pred             cCCCCCCCCCCeEEEEecCCC
Q 027022          197 LGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       197 lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      |- ...++.||++-.+|+-..
T Consensus       616 l~-~~~v~~gD~~~f~g~~~~  635 (955)
T KOG1421|consen  616 LT-DTTVLRGDECTFEGFTED  635 (955)
T ss_pred             cc-eeeEecCCceeEeccccc
Confidence            63 456999999999998755

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.18  E-value=2.1  Score=37.54  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGT  199 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~  199 (229)
                      ++|+.|-++.+-.|+|+.||+.+        +...|...+   .     -+...++.+-|.|.-.++.-...+|.+++++
T Consensus       114 Gsggvft~~~~~vvvTAtHVlg~--------~~a~v~~~g---~-----~~~~tF~~~GDfA~~~~~~~~G~~P~~k~a~  177 (297)
T PF05579_consen  114 GSGGVFTIGGNTVVVTATHVLGG--------NTARVSGVG---T-----RRMLTFKKNGDFAEADITNWPGAAPKYKFAQ  177 (297)
T ss_dssp             EEEEEEECTTEEEEEEEHHHCBT--------TEEEEEETT---E-----EEEEEEEEETTEEEEEETTS-S---B--B-T
T ss_pred             cccceEEECCeEEEEEEEEEcCC--------CeEEEEecc---e-----EEEEEEeccCcEEEEECCCCCCCCCceeecC
Confidence            34444545554589999999973        445555422   1     2456678889999999954445788888873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A.

>PF03510 Peptidase_C24: 2C endopeptidase (C24) cysteine protease family; InterPro: IPR000317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.22  E-value=3.1  Score=31.39  Aligned_cols=55  Identities=24%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             EEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCC
Q 027022          124 GFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH  201 (229)
Q Consensus       124 GfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~  201 (229)
                      ++-|+. |.++|+.||.+       ..+.+     +  |..    =+++.  .+.|+|+++.+..  .+|.+++++..
T Consensus         3 avHIGn-G~~vt~tHva~-------~~~~v-----~--g~~----f~~~~--~~ge~~~v~~~~~--~~p~~~ig~g~   57 (105)
T PF03510_consen    3 AVHIGN-GRYVTVTHVAK-------SSDSV-----D--GQP----FKIVK--TDGELCWVQSPLV--HLPAAQIGTGK   57 (105)
T ss_pred             eEEeCC-CEEEEEEEEec-------cCceE-----c--CcC----cEEEE--eccCEEEEECCCC--CCCeeEeccCC
Confidence            456764 99999999999       44332     1  332    13333  4559999999743  47888887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. The two signatures that defines this group of calivirus polyproteins identify a cysteine peptidase signature that belongs to MEROPS peptidase family C24 (clan PA(C)). Caliciviruses are positive-stranded ssRNA viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF2 encodes a structural protein []; while ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely those classified as small round structured viruses (SRSVs) and those classed as non-SRSVs. Calicivirus proteases from the non-SRSV group, which are members of the PA protease clan, constitute family C24 of the cysteine proteases (proteases from SRSVs belong to the C37 family). As mentioned above, the protease activity resides within a polyprotein. The enzyme cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3qo6_A	348	Crystal Structure Analysis Of The Plant Protease De		5e-27
1y8t_A	324	Crystal Structure Of Rv0983 From Mycobacterium Tube		1e-14
3nzi_A	334	Substrate Induced Remodeling Of The Active Site Reg		6e-13
3num_A	332	Substrate Induced Remodeling Of The Active Site Reg		6e-13
3nwu_A	227	Substrate Induced Remodeling Of The Active Site Reg		1e-12
3tjn_A	228	Htra1 Catalytic Domain, Apo Form Length = 228		2e-12
3tjo_A	231	Htra1 Catalytic Domain, Mutationally Inactivated Le		2e-12
1l1j_A	239	Crystal Structure Of The Protease Domain Of An Atp-		6e-12
3mh5_A	456	Htra Proteases Are Activated By A Conserved Mechani		1e-09
3mh4_A	456	Htra Proteases Are Activated By A Conserved Mechani		1e-09
3otp_A	459	Crystal Structure Of The Degp Dodecamer With A Mode		1e-09
2zle_A	448	Cryo-Em Structure Of Degp12OMP Length = 448		1e-09
4a8d_A	448	Degp Dodecamer With Bound Omp Length = 448		2e-09
3pv4_A	354	Structure Of Legionella Fallonii Degq (Delta-Pdz2 V		6e-09
3b8j_A	243	Q191a Mutant Of Degs-Deltapdz Length = 243		6e-09
2qgr_A	243	Structure Of The R178a Mutant Of Delta Pdz Degs Pro		6e-09
2qf3_A	243	Structure Of The Delta Pdz Truncation Of The Degs P		6e-09
3lgi_A	237	Structure Of The Protease Domain Of Degs (Degs-Delt		6e-09
2rce_A	243	Dfp Modified Degs Delta Pdz Length = 243		6e-09
3lgv_A	241	H198p Mutant Of The Degs-Deltapdz Protease Length =		6e-09
3gcn_A	340	Crystal Structure Of Degs H198pD320A MUTANT MODIFIE		6e-09
3lh3_A	241	Dfp Modified Degs Delta Pdz Length = 241		7e-09
3lgy_A	241	R178a Mutant Of The Degs-Deltapdz Protease Length =		7e-09
3lh1_A	241	Q191a Mutant Of The Degs-Deltapdz Length = 241		7e-09
1soz_A	314	Crystal Structure Of Degs Protease In Complex With		7e-09
2r3u_A	211	Crystal Structure Of The Pdz Deletion Mutant Of Deg		7e-09
3pv5_A	451	Structure Of Legionella Fallonii Degq (N189gP190G V		8e-09
3pv2_A	451	Structure Of Legionella Fallonii Degq (Wt) Length =		8e-09
3pv3_A	451	Structure Of Legionella Fallonii Degq (S193a Varian		8e-09
2qf0_A	243	Structure Of The Delta Pdz Truncation Of The Degs P		1e-08
1sot_A	320	Crystal Structure Of The Degs Stress Sensor Length		1e-08
3lgw_A	241	H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease		2e-08
3mh7_A	456	Htra Proteases Are Activated By A Conserved Mechani		3e-08
3cs0_A	448	Crystal Structure Of Degp24 Length = 448		3e-08
1ky9_A	448	Crystal Structure Of Degp (Htra) Length = 448		3e-08
3stj_A	345	Crystal Structure Of The Protease + Pdz1 Domain Of		6e-08
3lgt_A	241	Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease		6e-08
4a8a_A	436	Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 1		6e-08
3lgu_A	241	Y162a Mutant Of The Degs-Deltapdz Protease Length =		7e-08
3sti_A	245	Crystal Structure Of The Protease Domain Of Degq Fr		8e-08
1te0_A	318	Structural Analysis Of Degs, A Stress Sensor Of The		1e-07
1lcy_A	325	Crystal Structure Of The Mitochondrial Serine Prote		3e-06

>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1 Length = 348

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 100/166 (60%), Gaps = 19/166 (11%)
Query: 61  SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
           +A  +    +LQ +E   V+LFQE +PSVV I +L + ++  + + +++ V       +G
Sbjct: 2   AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQD--AFTLDVLEVP------QG 53
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGFVWDK GHIVTNYHV+        G    +V+L D        + K+VG D   D+
Sbjct: 54  SGSGFVWDKQGHIVTNYHVI-------RGASDLRVTLADQT----TFDAKVVGFDQDKDV 102
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           AVL++D    +L+P+ +G S DL VGQ  FAIGNP+G + TLTTGV
Sbjct: 103 AVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGV 148

>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium Tuberculosis- Proteolytically Active Form Length = 324

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 61/108 (56%), Gaps = 9/108 (8%)
Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCK--VSLFDAKGNGFYREGKMVGCDPAYD 179
           GSG +    G I+TN HV+A  A    G    K  V+  D +   F     +VG DP  D
Sbjct: 33  GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFT----VVGADPTSD 88
Query: 180 LAVLKVD-VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +AV++V  V G  L P+ LG+S DLRVGQ   AIG+P G E T+TTG+
Sbjct: 89  IAVVRVQGVSG--LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGI 134

>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 334

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
            +GSGF+  + G IVTN HVV       +  HR KV L     NG   E K+   D   D
Sbjct: 46  ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 95  IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140

>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
            +GSGF+  + G IVTN HVV       +  HR KV L     NG   E K+   D   D
Sbjct: 46  ASGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKAD 94
Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 95  IALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140

>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates Htra1 Activity Length = 227

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGF+  + G IVTN HVV       +  HR KV L     NG   E K+   D   D+
Sbjct: 47  SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 95
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 96  ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140

>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form Length = 228

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGF+  + G IVTN HVV       +  HR KV L     NG   E K+   D   D+
Sbjct: 64  SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 112
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 113 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 157

>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated Length = 231

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 12/106 (11%)
Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGF+  + G IVTN HVV       +  HR KV L     NG   E K+   D   D+
Sbjct: 64  SGSGFIVSEDGLIVTNAHVV-------TNKHRVKVEL----KNGATYEAKIKDVDEKADI 112
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 113 ALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 157

>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 23/162 (14%)
Query: 75  EDRVVQLFQETSPSVVSIQDLELSK----NP------KSTSSELMLVDGEYAKVEGTGSG 124
           E  +V + +  +P+VV I  ++  K    +P      K    EL    G   +V   GSG
Sbjct: 3   ESPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELP--PGFERQVASLGSG 60
Query: 125 FVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLK 184
           F++D  G+I+TNYHVV        G     V++ D    G   + + +G D   D+AV+K
Sbjct: 61  FIFDPEGYILTNYHVVG-------GADNITVTMLD----GSKYDAEYIGGDEELDIAVIK 109
Query: 185 VDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +     +   +  G S  +++G+   AIGNP GF+ T+T GV
Sbjct: 110 IKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGV 151

>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + KMVG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + KMVG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model Substrate Length = 459

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + KMVG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP Length = 448

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + KMVG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp Length = 448

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + KMVG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKMVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant) Length = 354

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K E  GSG + D   G I+TN HV+   +  T       V+L D    G   + +++G D
Sbjct: 74  KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
              DLAVLK+D +   LK +V+G S  L VG    AIGNP+G  
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164

>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 39  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 86  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159

>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 39  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 86  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159

>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 39  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 86  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159

>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz) At 1.65 A Length = 237

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 27  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 73
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 74  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 123
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 124 PHIGDVVLAIGNPYNLGQTITQGI 147

>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz Length = 243

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 39  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 86  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159

>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157

>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY DFP IN Complex With Omp Peptide (Yqf) Length = 340

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82  FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
            +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+ 
Sbjct: 36  VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 83
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
                 +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +    
Sbjct: 84  ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 132
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
              +G    AIGNPY    T+T G+
Sbjct: 133 VPHIGDVVLAIGNPYNLGQTITQGI 157

>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157

>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157

>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz Length = 241

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQTITQGI 157

>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An Activating Peptide Length = 314

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82  FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
            +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+ 
Sbjct: 10  VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
                 +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +    
Sbjct: 58  ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
              +G    AIGNPY    T+T G+
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGI 131

>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs Length = 211

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 11  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 57
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 58  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 107
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 108 PHIGDVVLAIGNPYNLGQTITQGI 131

>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT) Length = 451

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K E  GSG + D   G I+TN HV+   +  T       V+L D    G   + +++G D
Sbjct: 74  KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
              DLAVLK+D +   LK +V+G S  L VG    AIGNP+G  
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164

>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt) Length = 451

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K E  GSG + D   G I+TN HV+   +  T       V+L D    G   + +++G D
Sbjct: 74  KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
              DLAVLK+D +   LK +V+G S  L VG    AIGNP+G  
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164

>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant) Length = 451

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K E  GSG + D   G I+TN HV+   +  T       V+L D    G   + +++G D
Sbjct: 74  KFESIGSGVIIDPNNGVIITNDHVIRNASLIT-------VTLQD----GRRLKARLIGGD 122
Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE 219
              DLAVLK+D +   LK +V+G S  L VG    AIGNP+G  
Sbjct: 123 SETDLAVLKIDAK--NLKSLVIGDSDKLEVGDFVVAIGNPFGLN 164

>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 39  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIXDQRGYIITNKHVI-- 85
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 86  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 135
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 136 PHIGDVVLAIGNPYNLGQTITQGI 159

>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor Length = 320

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 23/145 (15%)
Query: 82  FQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVA 141
            +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+ 
Sbjct: 10  VRRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIXDQRGYIITNKHVI- 57
Query: 142 KLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSH 201
                 +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +    
Sbjct: 58  ------NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARR 106
Query: 202 DLRVGQSCFAIGNPYGFEDTLTTGV 226
              +G    AIGNPY    T+T G+
Sbjct: 107 VPHIGDVVLAIGNPYNLGQTITQGI 131

>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY     +T G+
Sbjct: 134 PHIGDVVLAIGNPYNLGQVITQGI 157

>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + K VG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  +    S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|3CS0|A Chain A, Crystal Structure Of Degp24 Length = 448

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + K VG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  +    S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra) Length = 448

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 122 GSGFVWDK-FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           GSG + D   G++VTN HVV             KV L D    G   + K VG DP  D+
Sbjct: 88  GSGVIIDADKGYVVTNNHVVDNATV-------IKVQLSD----GRKFDAKXVGKDPRSDI 136
Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A++++      L  +    S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 137 ALIQIQ-NPKNLTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq From Escherichia Coli Length = 345

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 119 EGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
           EG GSG + +   G+++TN HV+ +         +  + L D    G   + K++G D  
Sbjct: 62  EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQ 110
Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            D+A+L++     +L  + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 111 SDIALLQIQ-NPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease Length = 241

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNP     T+T G+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGI 157

>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In Complex With Lysozyme Length = 436

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 119 EGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA 177
           EG GSG + +   G+++TN HV+ +         +  + L D    G   + K++G D  
Sbjct: 62  EGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFDAKLIGSDDQ 110
Query: 178 YDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            D+A+L++     +L  + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 111 SDIALLQIQ-NPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease Length = 241

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 37  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 83
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVLK++  G  L  + +     
Sbjct: 84  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLKINATG-GLPTIPINARRV 133
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNP     T+T G+
Sbjct: 134 PHIGDVVLAIGNPANLGQTITQGI 157

>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From Escherichia Coli Length = 245

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 110 LVDGEYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYRE 168
           L D      EG GSG + +   G+++TN HV+ +         +  + L D    G   +
Sbjct: 53  LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQA-------QKISIQLND----GREFD 101
Query: 169 GKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            K++G D   D+A+L++     +L  + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 102 AKLIGSDDQSDIALLQIQNPS-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The Bacterial Periplasm Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 23/144 (15%)
Query: 83  QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAK 142
           +  +P+VV++ +  L+ N   + ++L        ++   GSG + D+ G+I+TN HV+  
Sbjct: 16  RRAAPAVVNVYNRGLNTN---SHNQL--------EIRTLGSGVIMDQRGYIITNKHVI-- 62
Query: 143 LATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHD 202
                +   +  V+L D    G   E  +VG D   DLAVL +   G  L  + +     
Sbjct: 63  -----NDADQIIVALQD----GRVFEALLVGSDSLTDLAVLIIKATG-GLPTIPINARRV 112
Query: 203 LRVGQSCFAIGNPYGFEDTLTTGV 226
             +G    AIGNPY    T+T G+
Sbjct: 113 PHIGDVVLAIGNPYNLGQTITQGI 136

>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease Htra2 Length = 325

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Query: 78  VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNY 137
           +  + ++T+P+VV I+ L+  ++P           G    +   GSGFV    G IVTN 
Sbjct: 17  IADVVEKTAPAVVYIEILD--RHP---------FLGREVPIS-NGSGFVVAADGLIVTNA 64
Query: 138 HVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL 197
           HVVA        L            +G   E  +   DP  D+A L++  +   L  + L
Sbjct: 65  HVVADRRRVRVRLL-----------SGDTYEAVVTAVDPVADIATLRIQTKE-PLPTLPL 112
Query: 198 GTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           G S D+R G+   A+G+P+  ++T+T+G+
Sbjct: 113 GRSADVRQGEFVVAMGSPFALQNTITSGI 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	2e-45
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	8e-33
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	2e-30
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	8e-30
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	1e-29
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	9e-28
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	4e-27
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	9e-27
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	2e-25
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	3e-25
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	3e-24
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	3e-24
3k6y_A	237	Serine protease, possible membrane-associated seri	9e-24
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	1e-23
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	1e-23
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	2e-23
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	9e-23
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	1e-21
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	1e-19
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	7e-16
2w5e_A	163	Putative serine protease; coiled coil, transmembra	1e-14
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	6e-10
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	2e-05
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	8e-04

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348

 Score =  153 bits (389), Expect = 2e-45
 Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 19/166 (11%)

Query: 61  SAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEG 120
           +A  +    +LQ +E   V+LFQE +PSVV I +L + ++  +               +G
Sbjct: 2   AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFT--------LDVLEVPQG 53

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +GSGFVWDK GHIVTNYHV+        G    +V+L D     F  + K+VG D   D+
Sbjct: 54  SGSGFVWDKQGHIVTNYHVIR-------GASDLRVTLAD--QTTF--DAKVVGFDQDKDV 102

Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           AVL++D    +L+P+ +G S DL VGQ  FAIGNP+G + TLTTGV
Sbjct: 103 AVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGV 148

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score =  120 bits (302), Expect = 8e-33
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 26/157 (16%)

Query: 72  QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFG 131
            +    V Q+  +  PSVV ++          T            +    GSG +    G
Sbjct: 2   NMPPGSVEQVAAKVVPSVVMLE----------TDLG---------RQSEEGSGIILSAEG 42

Query: 132 HIVTNYHVV--AKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEG 189
            I+TN HV+  A      S   +  V+  D  G        +VG DP  D+AV++V    
Sbjct: 43  LILTNNHVIAAAAKPPLGSPPPKTTVTFSD--GRTA--PFTVVGADPTSDIAVVRVQGVS 98

Query: 190 FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             L P+ LG+S DLRVGQ   AIG+P G E T+TTG+
Sbjct: 99  -GLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGI 134

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Length = 239

 Score =  111 bits (280), Expect = 2e-30
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 25/160 (15%)

Query: 78  VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVD-----------GEYAKVEGTGSGFV 126
           +V + +  +P+VV I   ++ K  K++  +                G   +V   GSGF+
Sbjct: 6   IVNVVEACAPAVVKI---DVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFI 62

Query: 127 WDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVD 186
           +D  G+I+TNYHVV        G     V++ D    G   + + +G D   D+AV+K+ 
Sbjct: 63  FDPEGYILTNYHVVG-------GADNITVTMLD----GSKYDAEYIGGDEELDIAVIKIK 111

Query: 187 VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
               +   +  G S  +++G+   AIGNP GF+ T+T GV
Sbjct: 112 ASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGV 151

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Length = 231

 Score =  109 bits (275), Expect = 8e-30
 Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 28/185 (15%)

Query: 42  LSSFLVNFCSPSSTLPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNP 101
           + S   +    S  +P          + +     + +  + ++ +P+VV I+        
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMDPNSLRHKY----NFIADVVEKIAPAVVHIELFRKLPFS 56

Query: 102 KSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK 161
           K                  +GSGF+  + G IVTN HVV          HR KV L +  
Sbjct: 57  KRE------------VPVASGSGFIVSEDGLIVTNAHVVT-------NKHRVKVELKN-- 95

Query: 162 GNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT 221
           G  +  E K+   D   D+A++K+D +G +L  ++LG S +LR G+   AIG+P+  ++T
Sbjct: 96  GATY--EAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNT 152

Query: 222 LTTGV 226
           +TTG+
Sbjct: 153 VTTGI 157

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score =  111 bits (280), Expect = 1e-29
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 24/164 (14%)

Query: 63  IALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTG 122
           +  +  + L+ + + +  + ++ +P+VV I                 L   +      +G
Sbjct: 1   MGQEDPNSLRHKYNFIADVVEKIAPAVVHI------------ELFRKLPFSKREVPVASG 48

Query: 123 SGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAV 182
           SGF+  + G IVTN HVV          HR KV L +  G  +  E K+   D   D+A+
Sbjct: 49  SGFIVSEDGLIVTNAHVVT-------NKHRVKVELKN--GATY--EAKIKDVDEKADIAL 97

Query: 183 LKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +K+D +G +L  ++LG S +LR G+   AIG+P+  ++T+TTG+
Sbjct: 98  IKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGI 140

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237

 Score =  104 bits (262), Expect = 9e-28
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 24/171 (14%)

Query: 56  LPSFRSAIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEY 115
           + S       Q     +          +  +P+VV++ +  L+ N  +            
Sbjct: 1   MRSLNPLSTPQFDSTDETPAS-YNLAVRRAAPAVVNVYNRGLNTNSHNQL---------- 49

Query: 116 AKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
            ++   GSG + D+ G+I+TN HV+   A          V+L D  G  F  E  +VG D
Sbjct: 50  -EIRTLGSGVIMDQRGYIITNKHVIND-ADQI------IVALQD--GRVF--EALLVGSD 97

Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
              DLAVLK++  G  L  + +       +G    AIGNPY    T+T G+
Sbjct: 98  SLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGI 147

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score =  104 bits (262), Expect = 4e-27
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 24/165 (14%)

Query: 62  AIALQQKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGT 121
           A+        + + + +  + ++T+P+VV I                  +  E       
Sbjct: 1   AVPSPPPASPRSQYNFIADVVEKTAPAVVYI----------EILDRHPFLGRE--VPISN 48

Query: 122 GSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLA 181
           GSGFV    G IVTN HVVA          R +V L    G+ +  E  +   DP  D+A
Sbjct: 49  GSGFVVAADGLIVTNAHVVA-------DRRRVRVRLLS--GDTY--EAVVTAVDPVADIA 97

Query: 182 VLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            L++  +   L  + LG S D+R G+   A+G+P+  ++T+T+G+
Sbjct: 98  TLRIQTKE-PLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGI 141

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score =  103 bits (260), Expect = 9e-27
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 23/147 (15%)

Query: 80  QLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHV 139
              +  +P+VV++ +  L+ N  +             ++   GSG + D+ G+I+TN HV
Sbjct: 13  LAVRRAAPAVVNVYNRGLNTNSHNQL-----------EIRTLGSGVIMDQRGYIITNKHV 61

Query: 140 VAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGT 199
           +   A          V+L D  G  F  E  +VG D   DLAVL +   G  L  + +  
Sbjct: 62  IND-ADQI------IVALQD--GRVF--EALLVGSDSLTDLAVLIIKATG-GLPTIPINA 109

Query: 200 SHDLRVGQSCFAIGNPYGFEDTLTTGV 226
                +G    AIGNPY    T+T G+
Sbjct: 110 RRVPHIGDVVLAIGNPYNLGQTITQGI 136

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Length = 210

 Score = 97.9 bits (244), Expect = 2e-25
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPA- 177
               +GFV  K   I+TN HV      D     R        KGNG   + K +   P  
Sbjct: 22  FKDATGFVIGK-NTIITNKHVSK----DYKVGDRITAHPNGDKGNGGIYKIKSISDYPGD 76

Query: 178 YDLAVLKVDVEGFELKP---------VVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT 227
            D++V+ ++ +  E  P              + D +V      IG P   +++     +
Sbjct: 77  EDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFES 135

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Length = 204

 Score = 97.2 bits (242), Expect = 3e-25
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
            + +GFV  K   I+TN HV                   +    G Y   K++      D
Sbjct: 22  KSATGFVVGK-NTILTNKHVSKNYKVGDRITAHPNSDKGN---GGIYSIKKIINYPGKED 77

Query: 180 LAVLKVDVEGFELKPVV---------LGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT 227
           ++V++V+    E  P              +   + G+    IG P+ +++      +
Sbjct: 78  VSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYES 134

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Length = 245

 Score = 95.7 bits (239), Expect = 3e-24
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 19/153 (12%)

Query: 81  LFQETSPSVVSIQDLELSKNPKSTSSEL------MLVDGEYAKVEGTGSGFVWD-KFGHI 133
           + ++  P+VVS++    +   +    E        L D      EG GSG + +   G++
Sbjct: 18  MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYV 77

Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
           +TN HV+ + A          + L D  G  F  + K++G D   D+A+L++     +L 
Sbjct: 78  LTNNHVINQ-AQKI------SIQLND--GREF--DAKLIGSDDQSDIALLQIQNPS-KLT 125

Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 126 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 98.9 bits (247), Expect = 3e-24
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 19/154 (12%)

Query: 80  QLFQETSPSVVSIQDLELSKNPKSTSSEL------MLVDGEYAKVEGTGSGFVWD-KFGH 132
            + ++  P+VVS++    +   +    E        L D      EG GSG + +   G+
Sbjct: 17  PMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGY 76

Query: 133 IVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFEL 192
           ++TN HV+ + A          + L D  G  F  + K++G D   D+A+L++     +L
Sbjct: 77  VLTNNHVINQ-AQKI------SIQLND--GREF--DAKLIGSDDQSDIALLQIQNPS-KL 124

Query: 193 KPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 125 TQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Length = 237

 Score = 94.0 bits (234), Expect = 9e-24
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 35/176 (19%)

Query: 53  SSTLPSFRSAIALQQKDELQLEEDRVV--QLFQETSPSVVSIQDLELSKNPKSTSSELML 110
           +S LP+     +      +   +  +V   +   T PSVV I+                 
Sbjct: 6   TSGLPAVLEPFSRTPVIPVASPDPALVNNPVVAATEPSVVKIR----------------- 48

Query: 111 VDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGK 170
                 +    G+GFV      ++TN HVVA       G +   V   D        E  
Sbjct: 49  SLAPRCQKVLEGTGFVISP-DRVMTNAHVVA-------GSNNVTVYAGDKP-----FEAT 95

Query: 171 MVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           +V  DP+ D+A+L V        P ++  +   + G     +G P G   T T   
Sbjct: 96  VVSYDPSVDVAILAVPHLP---PPPLVFAAEPAKTGADVVVLGYPGGGNFTATPAR 148

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Length = 200

 Score = 92.9 bits (231), Expect = 1e-23
 Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAY 178
              G+G V  K   IVTN H+        + +          KG G Y    +V      
Sbjct: 21  FVGGTGVVVGK-NTIVTNKHIAKSNDIFKNRVSAHHS--SKGKGGGNYDVKDIVEYPGKE 77

Query: 179 DLAVLKVDVEGFELKPV-----VLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT 227
           DLA++ V     E             +   +V      IG P G +       +
Sbjct: 78  DLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFES 131

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 19/153 (12%)

Query: 81  LFQETSPSVVSIQDLELSKNPKSTSSEL------MLVDGEYAKVEGTGSGFVWD-KFGHI 133
           + ++  P+VVS++    +   +    E        L D      EG GSG + +   G++
Sbjct: 18  MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYV 77

Query: 134 VTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK 193
           +TN HV+ + A          + L D  G  F  + K++G D   D+A+L++     +L 
Sbjct: 78  LTNNHVINQ-AQKI------SIQLND--GREF--DAKLIGSDDQSDIALLQIQNPS-KLT 125

Query: 194 PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            + +  S  LRVG    A+GNP+G   T T+G+
Sbjct: 126 QIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 158

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 96.2 bits (240), Expect = 2e-23
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 13/111 (11%)

Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K    GSG + D   G++VTN HVV   AT        KV L D  G  F  + KMVG D
Sbjct: 83  KFMALGSGVIIDADKGYVVTNNHVVDN-ATVI------KVQLSD--GRKF--DAKMVGKD 131

Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           P  D+A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+
Sbjct: 132 PRSDIALIQIQNPK-NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGI 181

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 94.3 bits (235), Expect = 9e-23
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 33/167 (19%)

Query: 80  QLFQETSPSVVSI---QDLELSKNPKSTSSELMLVD-----------GEYAKVEGTGSGF 125
            + +   P++V++     L     P  ++                   +  K E  GSG 
Sbjct: 23  PVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGV 82

Query: 126 VWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLK 184
           + D   G I+TN HV+   A+         V+L D  G     + +++G D   DLAVLK
Sbjct: 83  IIDPNNGVIITNDHVIRN-ASLI------TVTLQD--GRRL--KARLIGGDSETDLAVLK 131

Query: 185 VDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFED-----TLTTGV 226
           +D +   LK +V+G S  L VG    AIGNP+G        + T G+
Sbjct: 132 IDAKN--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGI 176

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Length = 242

 Score = 88.8 bits (220), Expect = 1e-21
 Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 15/165 (9%)

Query: 67  QKDELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFV 126
             +E++  E++    +   +   +  +                 +   + K + + +G +
Sbjct: 3   SAEEIKKHEEKW-NKYYGVNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVL 61

Query: 127 WDKFGHIVTNYHVV--AKLATDTSGLHRCKVSLFDAKGNGFYRE--GKMVGCDPAY---D 179
             K   ++TN H+   A              +  +      Y E   K +  +P     D
Sbjct: 62  IGK-NTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVD 120

Query: 180 LAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
           LA++++  +      G ++ P  +GTS+DL+ G     IG P+  
Sbjct: 121 LALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDH 165

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246

 Score = 83.5 bits (206), Expect = 1e-19
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 115 YAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREG----- 169
           + K     +G +  K   IVTNYHV  + A + S +        DA+ N F         
Sbjct: 43  FVKGSTLATGVLIGK-NTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEA 101

Query: 170 ---KMVGCDPAYDLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
              K        DLA++K+         G  ++P  +    D+  G     +G PY +
Sbjct: 102 EEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY 159

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 114 EYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSL-FDAKGNGFYREGKMV 172
           E        SG V  K   ++TN HVV     D   L     ++  D   NG +   ++ 
Sbjct: 28  EAPTGTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQIT 86

Query: 173 GCDPAYDLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
                 DLA++K          G  +KP  +  + + +V Q+    G P   
Sbjct: 87  KYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 138

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Length = 163

 Score = 68.1 bits (167), Expect = 1e-14
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 17/108 (15%)

Query: 119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAY 178
           EG G+GF       IVT  HVV              V        G   E K+    P  
Sbjct: 20  EGKGTGFFSG--NDIVTAAHVVG-------NNTFVNVCY-----EGLMYEAKVRY-MPEK 64

Query: 179 DLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           D+A +    +      + L  +                    +    +
Sbjct: 65  DIAFITCPGDLHPTARLKLSKN--PDYSCVTVMAYVNEDLVVSTAAAM 110

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 56.7 bits (136), Expect = 6e-10
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 14/123 (11%)

Query: 111 VDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGN----GFY 166
           +  E        SG V  K   ++TN HVV          H  K        +    G +
Sbjct: 25  IQVEAPTGTFIASGVVVGK-DTLLTNKHVVD---ATHGDPHALKAFPSAINQDNYPNGGF 80

Query: 167 REGKMVGCDPAYDLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGFED 220
              ++       DLA++K          G  +KP  +  + + +  Q+    G P     
Sbjct: 81  TAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPV 140

Query: 221 TLT 223
              
Sbjct: 141 ATM 143

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A Length = 213

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 21/124 (16%), Positives = 32/124 (25%), Gaps = 19/124 (15%)

Query: 95  LELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCK 154
              +   +  S   + V G      G+G  F  D     VT  HV+   +   SG+   +
Sbjct: 8   FPGAFRTQKPSLNTVNVVGS---SMGSGGVFTIDGKIKCVTAAHVLTGNSARVSGVGFNQ 64

Query: 155 VSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGN 214
           +  FD KG                D A+                            + G 
Sbjct: 65  MLDFDVKG----------------DFAIADCPNWQGVAPKAQFCEDGWTGRAYWLTSSGV 108

Query: 215 PYGF 218
             G 
Sbjct: 109 EPGV 112

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Length = 185

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 19/110 (17%)

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
            G         + +T  H      T  +                           P  D 
Sbjct: 16  LGFNVRSGSTYYFLTAGHCTDGATTWWANS-----------ARTTVLGTTSGSSFPNNDY 64

Query: 181 AVLKVD----VEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
            +++       +   +    + ++ +  VG +    G+  G      +G 
Sbjct: 65  GIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG----THSGS 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.94
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.94
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.93
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.92
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.92
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.92
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.92
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.91
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.91
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.91
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.91
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.91
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.9
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.88
3k6y_A	237	Serine protease, possible membrane-associated seri	99.85
2w5e_A	163	Putative serine protease; coiled coil, transmembra	99.72
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.4
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.34
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.34
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	99.33
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.31
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.3
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	99.3
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	99.3
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.25
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.23
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.21
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	99.17
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.14
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.03
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	98.68
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	98.61
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	97.99
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	97.93
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	97.92
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	97.9
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	97.87
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	97.87
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	97.83
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	97.82
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	97.79
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	97.79
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	97.78
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	97.78
1a7s_A	225	Heparin binding protein; serine protease homolog,	97.78
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	97.77
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	97.77
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	97.76
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	97.76
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	97.75
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	97.73
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	97.72
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	97.72
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	97.71
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	97.71
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	97.7
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	97.69
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	97.69
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	97.69
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	97.68
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	97.67
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	97.67
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	97.66
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	97.66
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	97.66
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	97.65
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	97.65
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	97.65
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	97.65
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	97.64
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	97.63
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	97.62
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	97.61
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	97.6
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	97.59
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	97.59
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	97.57
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	97.57
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	97.57
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	97.57
1aut_C	250	Activated protein C; serine proteinase, plasma cal	97.57
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	97.55
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	97.55
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	97.55
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	97.54
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	97.54
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	97.54
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	97.52
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	97.51
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	97.51
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.5
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	97.5
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	97.49
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	97.49
2aiq_A	231	Protein C activator; snake venom serine proteinase	97.49
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	97.48
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	97.48
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	97.45
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	97.42
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	97.41
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.4
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	97.4
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	97.4
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	97.39
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	97.38
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	97.36
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	97.36
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	97.32
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	97.29
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	97.15
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	97.12
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	97.1
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	97.04
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	96.95
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	96.93
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	96.82
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	96.82
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	96.81
1gpz_A	399	Complement C1R component; hydrolase, activation, i	96.79
1md8_A	329	C1R complement serine protease; innate immunity, a	96.78
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	96.65
1elv_A	333	Complement C1S component; trypsin-like serin prote	96.64
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	96.5
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	96.48
2xrc_A	565	Human complement factor I; immune system, hydrolas	96.34
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	96.17
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	95.74
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	95.23
3hrz_D	741	Complement factor B; serine protease, glycosilated	95.22
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	95.1
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	94.7
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	87.61

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.94  E-value=8e-27  Score=199.84  Aligned_cols=142  Identities=26%  Similarity=0.448  Sum_probs=101.3

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCC---CCcchhhhh---ccccccccceEEEEEEcCC-cEEEEccccccccccCCC
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPK---STSSELMLV---DGEYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATDTS  148 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~GSGfiI~~~-G~IlTn~HVv~~~~~~~~  148 (229)
                      .+++++++++.||||+|++........   .....||+.   +.......+.||||||+++ ||||||+|||.       
T Consensus        13 ~~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHvv~-------   85 (245)
T 3sti_A           13 PSLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-------   85 (245)
T ss_dssp             CBSHHHHHHHGGGEEEC----------------------------------CCEEEEEETTTTEEEECGGGC--------
T ss_pred             CCHHHHHHHhCCceEEEEEEEeeccccccchhhhhhccccccccccccccceEEEEEEeCCCCEEEEcHHHhC-------
Confidence            357899999999999999876543110   011112211   1112334689999999998 99999999999       


Q ss_pred             CcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          149 GLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       149 ~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      +++.+.|.+.++  +  .+.|+++..|+..||||||++. ...+++++|++++.+++||+|+++|||+|+..+++.|+||
T Consensus        86 ~a~~i~V~~~dg--~--~~~a~vv~~d~~~DlAlLkv~~-~~~~~~~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~vs  160 (245)
T 3sti_A           86 QAQKISIQLNDG--R--EFDAKLIGSDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVS  160 (245)
T ss_dssp             ---CEEEECTTS--C--EEEEEEEEEETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTBEEEEEECGGGSCCEEEEEEEE
T ss_pred             CCCEEEEEECCC--C--EEEEEEEEecCCCCEEEEEecc-CCCCceeeecCcCCCCCCCEEEEEECCCCCCCcEEeeEEe
Confidence            778899998774  4  7899999999999999999974 3579999999988999999999999999999999999998


Q ss_pred             C
Q 027022          229 Q  229 (229)
Q Consensus       229 a  229 (229)
                      +
T Consensus       161 ~  161 (245)
T 3sti_A          161 A  161 (245)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.94  E-value=8.6e-26  Score=207.87  Aligned_cols=142  Identities=27%  Similarity=0.456  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhh-hhcc------ccccccceEEEEEEcCC-cEEEEccccccccccC
Q 027022           75 EDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELM-LVDG------EYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATD  146 (229)
Q Consensus        75 ~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~GSGfiI~~~-G~IlTn~HVv~~~~~~  146 (229)
                      ..+++++++++.||||.|.+......... .+.+| .+++      ......+.||||||+++ ||||||+|||.     
T Consensus        12 ~~~~~~~~~~~~paVV~I~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~GSGfii~~~~G~IlTn~Hvv~-----   85 (436)
T 4a8c_A           12 LPSLAPMLEKVLPAVVSVRVEGTASQGQK-IPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-----   85 (436)
T ss_pred             CCCHHHHHHhhCCcEEEEEEEEeeccccc-CcchhhhhcccccccccCCcCceEEEEEEEECCCCEEEECHHHhC-----
Confidence            34689999999999999998775532111 11222 1111      12334689999999987 99999999999     


Q ss_pred             CCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeE
Q 027022          147 TSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV  226 (229)
Q Consensus       147 ~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~Gi  226 (229)
                        +++.+.|++.++.    .+.|++++.|+.+||||||++.. ..+++++|++++.+++||+|+++|||+|+..+++.|+
T Consensus        86 --~a~~i~V~~~dg~----~~~a~vv~~d~~~DlAllkv~~~-~~l~~~~l~~s~~~~~G~~v~aiG~P~g~~~~vt~G~  158 (436)
T 4a8c_A           86 --QAQKISIQLNDGR----EFDAKLIGSDDQSDIALLQIQNP-SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI  158 (436)
T ss_pred             --CCCEEEEEeCCCC----EEEEEEEEEcCCCCEEEEEecCC-CCCceEeccCcccCCCCCEEEEEEcCCCCCccEEEEE
Confidence              7889999998754    78999999999999999999743 5799999999999999999999999999999999999


Q ss_pred             EcC
Q 027022          227 TFQ  229 (229)
Q Consensus       227 VSa  229 (229)
                      ||+
T Consensus       159 vs~  161 (436)
T 4a8c_A          159 VSA  161 (436)
T ss_pred             Eee
Confidence            985

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.93  E-value=8.8e-26  Score=202.14  Aligned_cols=141  Identities=26%  Similarity=0.461  Sum_probs=111.1

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccCCC---CCcchhhhh---ccccccccceEEEEEEcCC-cEEEEccccccccccCCCC
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKNPK---STSSELMLV---DGEYAKVEGTGSGFVWDKF-GHIVTNYHVVAKLATDTSG  149 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~GSGfiI~~~-G~IlTn~HVv~~~~~~~~~  149 (229)
                      +++++++++.||||+|.+........   .....||+.   +.......+.||||||+++ ||||||+|||.       +
T Consensus        14 ~~~~~~~~~~paVV~I~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTnaHVv~-------~   86 (345)
T 3stj_A           14 SLAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVIN-------Q   86 (345)
T ss_dssp             BSHHHHHHHGGGEEEEEEEEC------------------------CCEEEEEEEEEEETTTTEEEECHHHHT-------T
T ss_pred             CHHHHHHHhCCcEEEEEEEEeecccccCchhhhhhcccccccccCcccceeEEEEEEECCCCEEEEChHHhC-------C
Confidence            57899999999999999876543110   111122211   1112344689999999987 99999999999       7


Q ss_pred             cceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          150 LHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       150 ~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      ++.+.|.+.++.    .+.|++++.|+..||||||++.. ..+++++|++++.+++||+|+++|||+|+..+++.|+||+
T Consensus        87 ~~~i~V~~~dg~----~~~a~vv~~d~~~DlAlLkv~~~-~~~~~~~l~~s~~~~~G~~V~aiG~p~g~~~~vt~G~Vs~  161 (345)
T 3stj_A           87 AQKISIQLNDGR----EFDAKLIGSDDQSDIALLQIQNP-SKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSA  161 (345)
T ss_dssp             EEEEEEECTTSC----EEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTTBEEEEEECGGGCSCEEEEEEEEE
T ss_pred             CCEEEEEeCCCc----EEEEEEEEEcCCCCEEEEEEccc-CCCceEeecCcccCCCCCEEEEEECCCCCCCcEEeeEEee
Confidence            889999987744    78999999999999999999743 6799999999999999999999999999999999999984

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.92  E-value=2.9e-25  Score=205.07  Aligned_cols=141  Identities=33%  Similarity=0.492  Sum_probs=113.0

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccC--C-CC-Ccchhhhhcc-------------------------ccccccceEEEEEE
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKN--P-KS-TSSELMLVDG-------------------------EYAKVEGTGSGFVW  127 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~--~-~~-~~~~~~~~~~-------------------------~~~~~~~~GSGfiI  127 (229)
                      ++.++++++.||||.|++......  + .+ ....||+...                         ......+.||||||
T Consensus        14 ~~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSG~ii   93 (448)
T 1ky9_A           14 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII   93 (448)
T ss_dssp             CSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEEEE
T ss_pred             cHHHHHHHhCCcEEEEEEEEEecccCCccchhhhhhhccccccccccccccccccccccccccccccccccccEEEEEEE
Confidence            578999999999999998765321  1 10 0111221100                         01233478999999


Q ss_pred             cCC-cEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCC
Q 027022          128 DKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVG  206 (229)
Q Consensus       128 ~~~-G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G  206 (229)
                      +++ ||||||+|||.       +++.+.|++.++.    .|.|++++.|+.+||||||++.. ..+++++|++++.+++|
T Consensus        94 ~~~~g~IlTn~HVv~-------~a~~i~V~~~dg~----~~~a~vv~~d~~~DlAvlkv~~~-~~~~~~~l~~s~~~~~G  161 (448)
T 1ky9_A           94 DADKGYVVTNNHVVD-------NATVIKVQLSDGR----KFDAKMVGKDPRSDIALIQIQNP-KNLTAIKMADSDALRVG  161 (448)
T ss_dssp             ETTTTEEEEEHHHHT-------TEEEEEEEETTSC----EEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTT
T ss_pred             ECCCCEEEEChHHhC-------CCCEEEEEECCCC----EEEEEEEEEcCCCCEEEEEecCC-CCCceEEecccccCCCC
Confidence            987 99999999999       8889999998754    78999999999999999999843 57999999999999999


Q ss_pred             CeEEEEecCCCCCCceeEeEEcC
Q 027022          207 QSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       207 ~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      |+|++||||+|+..+++.|+||+
T Consensus       162 ~~V~aiG~P~g~~~tvt~Givs~  184 (448)
T 1ky9_A          162 DYTVAIGNPFGLGETVTSGIVSA  184 (448)
T ss_dssp             CEEEEEECTTSSSCEEEEEEEEE
T ss_pred             CEEEEEECCCCCCCeEEeEEEee
Confidence            99999999999999999999984

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.92  E-value=2.3e-25  Score=205.94  Aligned_cols=142  Identities=30%  Similarity=0.447  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHhCCceEEEEeeeeccCCC---------CCcchhhhhc-----cccccccceEEEEEEcCC-cEEEEcccc
Q 027022           75 EDRVVQLFQETSPSVVSIQDLELSKNPK---------STSSELMLVD-----GEYAKVEGTGSGFVWDKF-GHIVTNYHV  139 (229)
Q Consensus        75 ~~~~~~~~~~~~psVV~I~~~~~~~~~~---------~~~~~~~~~~-----~~~~~~~~~GSGfiI~~~-G~IlTn~HV  139 (229)
                      ..+++++++++.||||.|++........         +....||+..     .......+.||||||+++ ||||||+||
T Consensus        18 ~~~~~~~~~~~~pavv~i~~~~~~~~~~~~~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~GSGfiI~~~~G~IlTn~HV   97 (451)
T 3pv2_A           18 MPSMAPVLKNIMPAIVNVAVQGYLPNDVTPPGSAGNDEENQPNNRPPQSRMPEKGRKFESIGSGVIIDPNNGVIITNDHV   97 (451)
T ss_dssp             CCCSHHHHHHHGGGEEEEEEEEECCC-----------------------------CEEEEEEEEEEEETTTTEEEECHHH
T ss_pred             CCCHHHHHHHhCCcEEEEEEEEeecccCCCccccccchhHHhhcccccccccccCcccceeEEEEEEECCCCEEEEChHH
Confidence            3467899999999999999877543211         1111222210     123456789999999974 999999999


Q ss_pred             ccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCC
Q 027022          140 VAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFE  219 (229)
Q Consensus       140 v~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~  219 (229)
                      |.       +++.+.|++.++.    .|.|++++.|+..||||||++.  ..+++++|++++.+++||+|+++|||+|+.
T Consensus        98 v~-------~a~~i~V~~~dg~----~~~a~vv~~d~~~DlAlLkv~~--~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~  164 (451)
T 3pv2_A           98 IR-------NASLITVTLQDGR----RLKARLIGGDSETDLAVLKIDA--KNLKSLVIGDSDKLEVGDFVVAIGNPFGLN  164 (451)
T ss_dssp             HT-------TEEEEEEECTTSC----EEECEEEEEETTTTEEEEECCC--SSCCCCCBCCGGGCCTTCEEEEEECCCCC-
T ss_pred             hC-------CCCEEEEEEcCCC----EEEEEEEecCcCCcEEEEEEcC--cCCceeEecCcccCCCCCEEEEEECCCCcc
Confidence            99       8889999997744    7899999999999999999974  579999999999999999999999999988


Q ss_pred             -----CceeEeEEcC
Q 027022          220 -----DTLTTGVTFQ  229 (229)
Q Consensus       220 -----~svt~GiVSa  229 (229)
                           .+++.|+||+
T Consensus       165 ~~~~~~~vt~Givs~  179 (451)
T 3pv2_A          165 SFGNSQSATFGIVSA  179 (451)
T ss_dssp             ----CCEEEEEEEEE
T ss_pred             ccccCCceeEEEEee
Confidence                 9999999984

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.92  E-value=2.2e-25  Score=190.16  Aligned_cols=143  Identities=31%  Similarity=0.551  Sum_probs=112.6

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCCC-C--cchhhhhccc----cccc-cceEEEEEEcCCcEEEEccccccccccCC
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPKS-T--SSELMLVDGE----YAKV-EGTGSGFVWDKFGHIVTNYHVVAKLATDT  147 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~~-~--~~~~~~~~~~----~~~~-~~~GSGfiI~~~G~IlTn~HVv~~~~~~~  147 (229)
                      .++.++++++.||||+|.+......+.. .  .+.|..++++    .... .+.||||||+++||||||+||+.      
T Consensus         4 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsG~iI~~~g~ILTnaHvv~------   77 (239)
T 1l1j_A            4 SPIVNVVEACAPAVVKIDVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVG------   77 (239)
T ss_dssp             CHHHHHHHHHGGGEEEEEEECC--CCCCCHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHS------
T ss_pred             hhHHHHHHHhCCCEEEEEEEEeecccccccccchhhhhhccccccccccccCceEEEEEEeCCCEEEEChHHhC------
Confidence            4688999999999999998765432111 0  1111122221    1223 67899999999899999999999      


Q ss_pred             CCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEE
Q 027022          148 SGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT  227 (229)
Q Consensus       148 ~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiV  227 (229)
                       +++.+.|.+.+  |+  .+.|+++++|+..||||||++.+...+++++|++++.+++||+|+++|||+|+..+++.|+|
T Consensus        78 -~~~~i~V~~~~--g~--~~~a~vv~~d~~~DlAllkl~~~~~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~~~vt~Giv  152 (239)
T 1l1j_A           78 -GADNITVTMLD--GS--KYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVV  152 (239)
T ss_dssp             -SCSSCEEECTT--SC--EEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEEEEEECTTSSSCEEEEEEE
T ss_pred             -CCCEEEEEECC--CC--EEEEEEEEEcCCCCEEEEEEcCCCCCCceEEecCccCCccccEEEEEECCCCCCCcEEEEEE
Confidence             66788888876  44  77899999999999999999854257899999988889999999999999999999999999


Q ss_pred             cC
Q 027022          228 FQ  229 (229)
Q Consensus       228 Sa  229 (229)
                      |+
T Consensus       153 s~  154 (239)
T 1l1j_A          153 SA  154 (239)
T ss_dssp             EE
T ss_pred             ec
Confidence            84

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.92  E-value=9.6e-25  Score=185.03  Aligned_cols=135  Identities=33%  Similarity=0.482  Sum_probs=114.1

Q ss_pred             cccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCc
Q 027022           71 LQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGL  150 (229)
Q Consensus        71 ~~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~  150 (229)
                      +......++++++++.||||+|.+.....            +.......+.||||||+++||||||+|||.       +.
T Consensus        26 ~~~~~~~~~~~~~~~~~sVV~I~~~~~~~------------~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~-------~~   86 (231)
T 3tjo_A           26 LRHKYNFIADVVEKIAPAVVHIELFRKLP------------FSKREVPVASGSGFIVSEDGLIVTNAHVVT-------NK   86 (231)
T ss_dssp             HHHHSCHHHHHHHHHGGGEEEEEEEEECT------------TSSCEEEEEEEEEEECSTTCEEEEETTTCC-------SS
T ss_pred             ccchhhHHHHHHHHhcCcEEEEEEEeccc------------cCCCccccceEEEEEEeCCCEEEEchhccc-------CC
Confidence            34556788999999999999999865421            111223447899999999999999999999       77


Q ss_pred             ceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          151 HRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       151 ~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      ..+.|.+.++  +  .+.++++..|+..||||||++.+ ..+++++|+++..+++|++|+++|||+++..+++.|+||+
T Consensus        87 ~~i~V~~~~g--~--~~~a~v~~~d~~~DlAlL~l~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~  160 (231)
T 3tjo_A           87 HRVKVELKNG--A--TYEAKIKDVDEKADIALIKIDHQ-GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVST  160 (231)
T ss_dssp             SEEEEECTTS--C--EEEEEEEEEETTTTEEEEECCCS-SCCCCCCBCCGGGCCTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEEcCCC--C--EEEEEEEEecCCCCEEEEEecCC-CCCCceecCCcCCCCCCCEEEEEECCCCCCCceeeEEEee
Confidence            8899988764  4  78999999999999999999854 5789999998889999999999999999999999999973

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.91  E-value=1.9e-24  Score=191.74  Aligned_cols=134  Identities=32%  Similarity=0.481  Sum_probs=112.6

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcc
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLH  151 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~  151 (229)
                      ......+.++++++.||||+|++.....            +.+.....+.||||||+++||||||+||+.       +++
T Consensus        11 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~------------~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~-------~~~   71 (325)
T 1lcy_A           11 RSQYNFIADVVEKTAPAVVYIEILDRHP------------FLGREVPISNGSGFVVAADGLIVTNAHVVA-------DRR   71 (325)
T ss_dssp             HHHSCHHHHHHHHHGGGEEEEEEEEEET------------TTTEEEEEEEEEEEEEETTTEEEECHHHHT-------TCS
T ss_pred             ccchhHHHHHHHHhCCcEEEEEEEecCc------------cCCCccccccEEEEEEeCCCEEEECHHHcC-------CCC
Confidence            3445678999999999999998754321            111123457899999999999999999999       778


Q ss_pred             eEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          152 RCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       152 ~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.|.+.+  |+  .+.++++++|+..||||||++.. ..+++++|+++..++.|++|+++|||++...+++.|+||+
T Consensus        72 ~i~V~~~~--g~--~~~a~v~~~d~~~DlAllkl~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~v~~G~vs~  144 (325)
T 1lcy_A           72 RVRVRLLS--GD--TYEAVVTAVDPVADIATLRIQTK-EPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSS  144 (325)
T ss_dssp             EEEEECTT--SC--EEEEEEEEEETTTTEEEEECCCS-SCCCCCCBCCGGGCCTTCEEEECCCTTSSSSCCEEEEBCS
T ss_pred             EEEEEeCC--CC--EEEEEEEEECCCCCEEEEEEcCC-CCCceEEecccccCCCCCEEEEEECCCCCCCcEEeEEEec
Confidence            88888866  44  77899999999999999999854 5789999998888999999999999999999999999984

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.91  E-value=2.2e-24  Score=183.25  Aligned_cols=130  Identities=30%  Similarity=0.458  Sum_probs=111.0

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEE
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKV  155 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V  155 (229)
                      .++.++++++.||||+|.+.....           .+.......+.||||||+++||||||+|||.       +.+.+.|
T Consensus        20 ~~~~~~~~~~~~sVV~I~~~~~~~-----------~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~-------~~~~~~V   81 (237)
T 3lgi_A           20 ASYNLAVRRAAPAVVNVYNRGLNT-----------NSHNQLEIRTLGSGVIMDQRGYIITNKHVIN-------DADQIIV   81 (237)
T ss_dssp             CBCHHHHHHHGGGEEEEEEECCTT-----------TCTTSCCEEEEEEEEEEETTTEEEEEHHHHT-------TCSEEEE
T ss_pred             cCHHHHHHHhCCcEEEEEEEeccc-----------CcccccccceEEEEEEEeCCCEEEEeeeecC-------CCCEEEE
Confidence            356789999999999999865432           0122344567899999999999999999999       7788999


Q ss_pred             EEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          156 SLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       156 ~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      .+.+  |+  .+.++++..|+..||||||++.+ ..+++++|++++.++.|++|+++|||++...+++.|+||
T Consensus        82 ~~~~--g~--~~~a~vv~~d~~~DlAll~l~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~~~~g~vs  149 (237)
T 3lgi_A           82 ALQD--GR--VFEALLVGSDSLTDLAVLKINAT-GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS  149 (237)
T ss_dssp             ECTT--SC--EEEEEEEEEETTTTEEEEECCCS-SCCCCCCCCTTCCCCTTBEEEEEECGGGSCSEEEEEEEE
T ss_pred             EeCC--CC--EEEEEEEEEcCCCCEEEEEecCC-CCCceEeccCcccCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence            8876  44  78999999999999999999854 358999999888999999999999999999999999997

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.91  E-value=8.8e-24  Score=187.82  Aligned_cols=134  Identities=32%  Similarity=0.476  Sum_probs=110.1

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcc
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLH  151 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~  151 (229)
                      ......+.++++++.||||+|.+.....            +.......+.||||||+++||||||+|||.       +..
T Consensus        10 ~~~~~~~~~~~~~~~~sVV~I~~~~~~~------------~~~~~~~~~~GSG~iI~~~G~ILTaaHvv~-------~~~   70 (332)
T 3num_A           10 RHKYNFIADVVEKIAPAVVHIELFRKLP------------FSKREVPVASGSGFIVSEDGLIVTNAHVVT-------NKH   70 (332)
T ss_dssp             HHHHCHHHHHHHHHGGGEEEEEEEEECT------------TSSCEEEEEEEEEEEEETTTEEEECTTTCC-------TTS
T ss_pred             ccccchHHHHHHHhcCcEEEEEEEeccc------------cCCCcceeeeEEEEEEeCCCEEEEChHHcC-------CCC
Confidence            4556788999999999999999865321            122234568999999999999999999999       778


Q ss_pred             eEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          152 RCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       152 ~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.|.+.++  +  .+.++++..|+..||||||++.+ ..++++.|+++..++.|++|+++|||+|...+++.|+||+
T Consensus        71 ~i~V~~~~g--~--~~~a~~~~~d~~~DlAlL~l~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~  143 (332)
T 3num_A           71 RVKVELKNG--A--TYEAKIKDVDEKADIALIKIDHQ-GKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVST  143 (332)
T ss_dssp             EEEEEETTS--C--EEEEEEEEEETTTTEEEEEECCS-SCCCCCCBCCTTSCCTTCEEEEECC-----CCEEEEEEEE
T ss_pred             EEEEEECCC--C--EEEEEEEEecCCCCeEEEEEcCC-CCCceeeecCcccCCCCCEEEEEECCCCCCcceeeeEEEe
Confidence            899998764  4  78999999999999999999854 5789999999889999999999999999999999999973

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.91  E-value=4.2e-24  Score=191.20  Aligned_cols=139  Identities=47%  Similarity=0.759  Sum_probs=115.7

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcc
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLH  151 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~  151 (229)
                      .+.+....++++++.||||+|.+.....+.      |  .........+.||||||+++||||||+|||.       ++.
T Consensus        13 ~~~e~~~~~~~~~~~~sVV~I~~~~~~~~~------~--~~~~~~~~~g~GSG~iI~~~G~IlT~aHvv~-------~~~   77 (348)
T 3qo6_A           13 QTDELATVRLFQENTPSVVYITNLAVRQDA------F--TLDVLEVPQGSGSGFVWDKQGHIVTNYHVIR-------GAS   77 (348)
T ss_dssp             CHHHHHHHHHHHHHGGGEEEEEEEEEEECS------S--SCCEEEEEEEEEEEEEEETTTEEEECHHHHT-------TCS
T ss_pred             CcchhHHHHHHHHhCCCEEEEEEEeecccc------c--ccccccccCceEEEEEEeCCCEEEECHHHhC-------CCc
Confidence            355667889999999999999987654311      0  0011123467899999999999999999999       778


Q ss_pred             eEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          152 RCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       152 ~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.|.+.++.    .+.++++..|+..||||||++.+...+++++|+++..+++|++|+++|||+|...+++.|+||+
T Consensus        78 ~i~V~~~~g~----~~~a~~v~~d~~~DlAlLkl~~~~~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~~~~~g~vs~  151 (348)
T 3qo6_A           78 DLRVTLADQT----TFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISG  151 (348)
T ss_dssp             EEEEECTTSC----EEEEEEEEEEGGGTEEEEECCCCGGGCCCCCBCCSTTCCTTCEEEEEECGGGCTTEEEEEEEEE
T ss_pred             EEEEEECCCC----EEEEEEEEEcCcCCEEEEEEcCCCCCceeEEecCcccCCCCCEEEEEECCCCCCCcEeEEEEEe
Confidence            8999987644    7899999999999999999986545689999999989999999999999999999999999973

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.91  E-value=6.4e-24  Score=199.42  Aligned_cols=125  Identities=26%  Similarity=0.300  Sum_probs=101.8

Q ss_pred             HhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe-cCCC
Q 027022           84 ETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF-DAKG  162 (229)
Q Consensus        84 ~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~-~~~g  162 (229)
                      .+.+|||+|++.....       +++..|....+..+.||||||+ +||||||+|||+       +++.+.|++. |  |
T Consensus        45 ~~~~sVV~I~~~~~~~-------~~~~Pw~~~~~~~s~GSGfiI~-dG~IlTN~HVV~-------~a~~i~V~~~~d--g  107 (539)
T 4fln_A           45 SFLNAVVKVYCTHTAP-------DYSLPWQKQRQFTSTGSAFMIG-DGKLLTNAHCVE-------HDTQVKVKRRGD--D  107 (539)
T ss_dssp             HHHTTEEEEEEEECCB-------CSSSTTSBCCCEEEEEEEEEEE-TTEEEECGGGGT-------TEEEEEEECTTC--C
T ss_pred             ccCCCeEEEEEEecCC-------CCCCccccCCccceEEEEEEEE-CCEEEEChHHcC-------CCCeEEEEEccC--C
Confidence            3469999999876542       3444456667788999999998 699999999999       8899999885 4  4


Q ss_pred             CeeEEeEEEEEEcCCCcEEEEEEccCCC--CccceEcCCCCCCCCCCeEEEEecCCCCC-CceeEeEEcC
Q 027022          163 NGFYREGKMVGCDPAYDLAVLKVDVEGF--ELKPVVLGTSHDLRVGQSCFAIGNPYGFE-DTLTTGVTFQ  229 (229)
Q Consensus       163 ~~~~~~A~vv~~d~~~DlAvLki~~~~~--~~~~l~lg~s~~~~~G~~V~aiG~P~G~~-~svt~GiVSa  229 (229)
                      +  .|.|++++.|+.+||||||++....  .++++.+++  .+++||+|++||||+|+. .++|.||||+
T Consensus       108 ~--~~~A~vv~~D~~~DLAvLkv~~~~~~~~~~pl~~g~--~~~vGd~V~aiG~P~g~~~~tvT~GIVSa  173 (539)
T 4fln_A          108 R--KYVAKVLVRGVDCDIALLSVESEDFWKGAEPLRLGH--LPRLQDSVTVVGYPLGGDTISVTKGVVSR  173 (539)
T ss_dssp             C--CEEEEEEEEETTTTEEEEEECCSSSSTTCCCCCBCC--CCCTTCEEEEEECCSSSCCCEEEEEEEEE
T ss_pred             E--EEEEEEEEECCCCCEEEEEEeCCcCCcCCceeecCC--cCcCCCeEEEEEcCCCCCCCcEEeEEECc
Confidence            4  7899999999999999999985422  345666754  578899999999999986 4999999984

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.90  E-value=2e-23  Score=184.56  Aligned_cols=131  Identities=30%  Similarity=0.452  Sum_probs=110.9

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEE
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKV  155 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V  155 (229)
                      .++.++++++.||||+|.+......           +.......+.||||+|+++||||||+|||.       +...+.|
T Consensus         9 ~~~~~~~~~~~~sVV~I~~~~~~~~-----------~~~~~~~~~~gsG~iI~~~G~IlT~aHvv~-------~~~~i~V   70 (318)
T 1te0_A            9 ASYNLAVRRAAPAVVNVYNRGLNTN-----------SHNQLEIRTLGSGVIMDQRGYIITNKHVIN-------DADQIIV   70 (318)
T ss_dssp             CCCHHHHHHHGGGEEEEEEEEECSS-----------SSCCEEEEEEEEEEECSTTCEEEEEHHHHT-------TCSEEEE
T ss_pred             ccHHHHHHhcCCcEEEEEeEeccCC-----------cccccccCccEEEEEEeCCCEEEECHHHcC-------CCCEEEE
Confidence            3567899999999999998664321           112234568899999999999999999999       6778888


Q ss_pred             EEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          156 SLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       156 ~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+.+  |+  .+.++++.+|+..||||||++.. ..+++++|+++..+++|++|+++|||+|+..+++.|+||+
T Consensus        71 ~~~~--g~--~~~a~v~~~d~~~DlAllk~~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~g~vs~  139 (318)
T 1te0_A           71 ALQD--GR--VFEALLVGSDSLTDLAVLIIKAT-GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISA  139 (318)
T ss_dssp             ECTT--SC--EEEEEEEEEETTTTEEEEECCCS-SCCCCCCCCTTCCCCTTCEEEEECCCSSSSCCEEEEEEEE
T ss_pred             EeCC--CC--EEEEEEEEeCCCceEEEEEEeCC-CCCceEEeeCccCCCCCCEEEEEEcCCCCCCcEEeeEEec
Confidence            8866  44  77999999999999999999854 4789999998888999999999999999999999999973

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.88  E-value=1.9e-22  Score=178.45  Aligned_cols=130  Identities=38%  Similarity=0.534  Sum_probs=104.9

Q ss_pred             hHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCC--CCcceE
Q 027022           76 DRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDT--SGLHRC  153 (229)
Q Consensus        76 ~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~--~~~~~~  153 (229)
                      .++.++++++.||||+|.....                   ...+.||||||+++||||||+|||.+.....  .....+
T Consensus         6 ~~~~~~~~~~~~svV~I~~~~~-------------------~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i   66 (324)
T 1y8t_A            6 GSVEQVAAKVVPSVVMLETDLG-------------------RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKT   66 (324)
T ss_dssp             CCHHHHHHHHGGGEEEEEEEC-----------------------CEEEEEECCTTSEEEEEHHHHTTCC--------CEE
T ss_pred             ccHHHHHHHhcCcEEEEEEEcc-------------------CCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEE
Confidence            4678999999999999986432                   2357899999998899999999998321000  001378


Q ss_pred             EEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          154 KVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       154 ~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .|.+.+  |+  .+.++++.+|+..||||||++.+ ..+++++|+++..+++|++|+++|||+|+..+++.|+||+
T Consensus        67 ~V~~~~--g~--~~~a~vv~~d~~~DlAllkl~~~-~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~~~~G~vs~  137 (324)
T 1y8t_A           67 TVTFSD--GR--TAPFTVVGADPTSDIAVVRVQGV-SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSA  137 (324)
T ss_dssp             EEEETT--CC--EECEEEEECCTTTTEEEEEECSC-CSCCCCEECCSTTCCTTCEEEEEECGGGCTTEEEEEEEEE
T ss_pred             EEEeCC--CC--EEEEEEEEeCCCCCEEEEEECCC-CCCceEEecCcccCCCCCEEEEEEcCCCCCCcEeeeEEee
Confidence            888866  44  77899999999999999999854 5799999998888999999999999999999999999973

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.85  E-value=4.9e-21  Score=162.17  Aligned_cols=117  Identities=31%  Similarity=0.378  Sum_probs=100.9

Q ss_pred             HHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe
Q 027022           79 VQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF  158 (229)
Q Consensus        79 ~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~  158 (229)
                      .++++++++|||+|+.....                 ....+.||||||+ +||||||+||+.       +...+.|.+.
T Consensus        34 ~~~~~~~~~svV~I~~~~~~-----------------~~~~~~GsG~iI~-~~~VlTaaH~v~-------~~~~~~V~~~   88 (237)
T 3k6y_A           34 NPVVAATEPSVVKIRSLAPR-----------------CQKVLEGTGFVIS-PDRVMTNAHVVA-------GSNNVTVYAG   88 (237)
T ss_dssp             CHHHHHHGGGEEEEEEEEGG-----------------GTEEEEEEEEEEE-TTEEEECGGGTT-------TCSEEEEEET
T ss_pred             HHHHHHhcCCEEEEEEEecC-----------------CCcceeEEEEEEE-CCEEEECHHHcC-------CCceEEEEEC
Confidence            57899999999999975432                 2346789999999 699999999999       7778888885


Q ss_pred             cCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          159 DAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       159 ~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      +  +   .+.++++.+|+..||||||++.  ..+++++|+ +..++.|+.|+++|||+|...+++.|+|+
T Consensus        89 ~--~---~~~~~~v~~~~~~DiAll~l~~--~~~~~~~l~-~~~~~~G~~v~v~G~p~g~~~~~~~g~v~  150 (237)
T 3k6y_A           89 D--K---PFEATVVSYDPSVDVAILAVPH--LPPPPLVFA-AEPAKTGADVVVLGYPGGGNFTATPARIR  150 (237)
T ss_dssp             T--E---EEECEEEEEETTTTEEEEECTT--CCSCCCCBC-SSCCCTTCEEEEEECGGGCSCEEEEEEEE
T ss_pred             C--c---EEEEEEEEEcCCCCEEEEEeCC--CCCCceecC-CCCCCCCCEEEEEECCCCCCCccceeEEE
Confidence            5  1   6789999999999999999983  568999998 67899999999999999998899988875

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=99.72  E-value=3.6e-17  Score=131.80  Aligned_cols=82  Identities=24%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEc
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL  197 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~l  197 (229)
                      ..+.||||+|  +||||||+|||+       +++.++|++ +  |+  .+.|+++ .|+..||||||++.....+++++|
T Consensus        19 ~~~~GSGfii--~g~IlTn~HVV~-------~~~~i~V~~-d--g~--~~~a~vv-~d~~~DlAlLkv~~~~~~~~~l~l   83 (163)
T 2w5e_A           19 PEGKGTGFFS--GNDIVTAAHVVG-------NNTFVNVCY-E--GL--MYEAKVR-YMPEKDIAFITCPGDLHPTARLKL   83 (163)
T ss_dssp             TTEEEEEEEE--TTEEEEEHHHHT-------TCSEEEEEE-T--TE--EEEEEEE-ECCSSSEEEEECCTTCCCSCCCCB
T ss_pred             CceeEEEEEE--CCEEEecHHHhC-------CCceEEEEE-C--CE--EEEEEEE-EECCCCEEEEEecCCCCCcceEEc
Confidence            5678999999  699999999999       778899988 5  54  6799999 999999999999865445566778


Q ss_pred             CCCCCCCCCCeEEEEecCCC
Q 027022          198 GTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       198 g~s~~~~~G~~V~aiG~P~G  217 (229)
                      +++..   .++|+++|||.+
T Consensus        84 ~~~~~---~~~v~~~G~p~~  100 (163)
T 2w5e_A           84 SKNPD---YSCVTVMAYVNE  100 (163)
T ss_dssp             CSSCC---TTEEEEEEEETT
T ss_pred             CCCCC---CCEEEEEEeCCC
Confidence            87643   389999999976

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.40  E-value=5e-13  Score=110.77  Aligned_cols=101  Identities=20%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe--cCCCCeeEEeE-EEEEEcCCCcEEEEEEccCC------
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF--DAKGNGFYREG-KMVGCDPAYDLAVLKVDVEG------  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~--~~~g~~~~~~A-~vv~~d~~~DlAvLki~~~~------  189 (229)
                      ...||||+|++ +|||||+|++.+..    ....+.|.+.  ..+|+  .+.+ +++.+|+..||||||++...      
T Consensus        22 ~~~c~G~lI~~-~~VLTaaHcv~~~~----~~~~i~v~~~~~~~~g~--~~~~~~v~~~~~~~DiAll~l~~~~~~~~~~   94 (210)
T 2as9_A           22 FKDATGFVIGK-NTIITNKHVSKDYK----VGDRITAHPNGDKGNGG--IYKIKSISDYPGDEDISVMNIEEQAVERGPK   94 (210)
T ss_dssp             CSSCEEEEEET-TEEEECHHHHHHCC----TTCEEEESCCGGGCCSC--EEEEEEEEECSSSSSCEEEEECSEEEEEETT
T ss_pred             eeeEEEEEEeC-CEEEECHhHCCccC----CCCEEEEEeCcccCCCC--EEEEEEEEeCCCCCcEEEEEecCcccccccc
Confidence            46899999997 89999999998421    1235666442  12354  4566 58889999999999997521      


Q ss_pred             -----CCccceEcCCCCCCCCCCeEEEEecCCCCCCc----eeEeEEc
Q 027022          190 -----FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT----LTTGVTF  228 (229)
Q Consensus       190 -----~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~s----vt~GiVS  228 (229)
                           ..++++.|.  ..+..|+.|+++|+|.+...+    ++.|+|+
T Consensus        95 ~~~~~~~v~~i~l~--~~~~~g~~v~v~G~p~~~~~~~~l~~~~g~v~  140 (210)
T 2as9_A           95 GFNFNENVQAFNFA--KDAKVDDKIKVIGYPLPAQNSFKQFESTGTIK  140 (210)
T ss_dssp             EEEGGGSCCCCCBC--SCCCTTCEEEEEECSSTTTTTSCCEEEEEEEE
T ss_pred             ccccccccceeecC--CCCCCCCEEEEEeCCCCCCCCcceEEeeeEEc
Confidence                 135677774  478999999999999986544    4788886

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.34  E-value=2.3e-12  Score=108.67  Aligned_cols=96  Identities=27%  Similarity=0.373  Sum_probs=71.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCe----eEEeEEEEEEcC---CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNG----FYREGKMVGCDP---AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~----~~~~A~vv~~d~---~~DlAvLki~  186 (229)
                      ...|+||+|++ +|||||+|++.+..     ...+.|.+.++.     +..    ..+.++.+..++   ..||||||++
T Consensus        54 ~~~c~G~lI~~-~~VLTAaHcv~~~~-----~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~DiAll~l~  127 (242)
T 1agj_A           54 QTSATGVLIGK-NTVLTNRHIAKFAN-----GDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLK  127 (242)
T ss_dssp             TEEEEEEECSS-SEEEECHHHHGGGT-----TCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEEC
T ss_pred             CccEEEEEEeC-CEEEEChhhcccCC-----CCceEEEEecCccccccccccccCCceeEEEEEeCCCCCCCcEEEEEEc
Confidence            35799999997 89999999998421     112455555432     110    146788888888   8999999998


Q ss_pred             cCC------CCccceEcCCCCCCCCCCeEEEEecCCCCCC
Q 027022          187 VEG------FELKPVVLGTSHDLRVGQSCFAIGNPYGFED  220 (229)
Q Consensus       187 ~~~------~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~  220 (229)
                      .+.      ..++++.|+++..+..|+.++++|+|.+...
T Consensus       128 ~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~  167 (242)
T 1agj_A          128 PDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV  167 (242)
T ss_dssp             CCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST
T ss_pred             CCCccccccccccceecCccccCCCCCEEEEEeCCCCCCC
Confidence            652      1378999987778899999999999988653

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.34  E-value=5.1e-13  Score=109.41  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=71.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe--cCCCCeeEEeE-EEEEEcCCCcEEEEEEccCC------
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF--DAKGNGFYREG-KMVGCDPAYDLAVLKVDVEG------  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~--~~~g~~~~~~A-~vv~~d~~~DlAvLki~~~~------  189 (229)
                      ...|+||+|++ +|||||+|++.+...   ....+.+.+.  ..+|+  .+.+ +++.+|+..||||||++.+.      
T Consensus        21 ~~~c~G~lI~~-~~VLTaaHcv~~~~~---~~~~v~v~~~~~~~~~~--~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~   94 (200)
T 2w7s_A           21 FVGGTGVVVGK-NTIVTNKHIAKSNDI---FKNRVSAHHSSKGKGGG--NYDVKDIVEYPGKEDLAIVHVHETSTEGLNF   94 (200)
T ss_dssp             ETTEEEEEEET-TEEEECHHHHHHHHH---TTCCEEETCCSSSCCCC--EECEEEEEECSSSSSCEEEEECSBCTTSCBG
T ss_pred             cceEEEEEEEC-CEEEEChhhcCCccc---CCcEEEEEecCccCCCc--EEEEEEEecCCCcceEEEEEECCCCCCcccc
Confidence            35799999997 799999999973210   0112444331  12344  4565 57888999999999998531      


Q ss_pred             -CCccceEcCCCCCCCCCCeEEEEecCCCCCCc----eeEeEEc
Q 027022          190 -FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT----LTTGVTF  228 (229)
Q Consensus       190 -~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~s----vt~GiVS  228 (229)
                       ..++++.|.  ..+..|+.++++|+|+|...+    ++.|+|+
T Consensus        95 ~~~v~pi~l~--~~~~~g~~v~v~G~p~g~~~~~~~~~~~g~v~  136 (200)
T 2w7s_A           95 NKNVSYTKFA--DGAKVKDRISVIGYPKGAQTKYKMFESTGTIN  136 (200)
T ss_dssp             GGSCCCCCBC--CCCCTTCEEEEEECTTHHHHTSCEEEEEEEEE
T ss_pred             cccccceecc--ccCCCCCEEEEEECCCCCCCccceEEeEEEEE
Confidence             136677774  468899999999999985433    4778876

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=99.33  E-value=4.7e-12  Score=103.87  Aligned_cols=91  Identities=18%  Similarity=0.121  Sum_probs=69.9

Q ss_pred             cceEEEEEEc-CCc--EEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCCCccc
Q 027022          119 EGTGSGFVWD-KFG--HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGFELKP  194 (229)
Q Consensus       119 ~~~GSGfiI~-~~G--~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~~~~~  194 (229)
                      ..-.+||++. ++|  |||||+||+.       +...+  .+.|       +.+++++.| +..|+||||++......+.
T Consensus        13 ~~CTsGf~v~~~~G~~~ilTa~Hc~~-------~g~~v--~~~d-------~~g~v~~~~~p~~DiAlikl~~~~~~~~~   76 (188)
T 2oua_A           13 GRCSVGFAATNASGQPGFVTAGHCGS-------VGTQV--SIGN-------GRGVFERSVFPGNDAAFVRGTSNFTLTNL   76 (188)
T ss_dssp             SEEECCEEEECTTCCEEEEECGGGCC-------TTCEE--EETT-------EEEEEEEEECSBSCEEEEEEEESCEEEEE
T ss_pred             CcEecCEEEEeCCCCEEEEECcccCC-------CCCEE--EecC-------ceEEEEeeCCCCCCEEEEEeCCCCccccc
Confidence            4578999995 478  9999999997       44443  3322       579999999 9999999999864322222


Q ss_pred             ---------eEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          195 ---------VVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       195 ---------l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                               ++++.+..+++||+|.++|+|.|    ++.|+|++
T Consensus        77 v~~~g~~~~~~l~~~~~~~vG~~v~~~G~~tG----~t~G~v~~  116 (188)
T 2oua_A           77 VSRYNSGGYATVSGSSTAPIGSQVCRSGSTTG----WYCGTIQA  116 (188)
T ss_dssp             EECGGGCSEEECCBCCCCCTTCEEEEEETTTE----EEEEEEEE
T ss_pred             eeecCCcceEeccCccCCCCCCeEEEEEcCCC----eEEEEEEE
Confidence                     35777788999999999999987    57788763

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.31  E-value=2.5e-12  Score=109.15  Aligned_cols=98  Identities=22%  Similarity=0.329  Sum_probs=70.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC----CC----eeEEeEEEEEEcC---CCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK----GN----GFYREGKMVGCDP---AYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~----g~----~~~~~A~vv~~d~---~~DlAvLki~~  187 (229)
                      ...||||+|++ +|||||+|++.+...   ....+.+.....+    +.    ...+.++.+..++   ..|||||+++.
T Consensus        47 ~~~c~G~lI~~-~~VLTAaHcv~~~~~---~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp~~~~~DiALLkl~~  122 (246)
T 1qtf_A           47 STLATGVLIGK-NTIVTNYHVAREAAK---NPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKP  122 (246)
T ss_dssp             TEEEEEEEEET-TEEEECHHHHGGGTT---CGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEECC
T ss_pred             CceEEEEEEEC-CEEEECHHhCCCCCC---CceEEEEecCccccccccccccCCceEEEEEEEeCCCCCCCCEEEEEEeC
Confidence            46799999997 799999999984210   0123444331100    00    0156788888888   99999999985


Q ss_pred             CCC------CccceEcCCCCCCCCCCeEEEEecCCCCCC
Q 027022          188 EGF------ELKPVVLGTSHDLRVGQSCFAIGNPYGFED  220 (229)
Q Consensus       188 ~~~------~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~  220 (229)
                      +..      .++++.|+++..+..|+.|+++|+|.|...
T Consensus       123 ~~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g~~~  161 (246)
T 1qtf_A          123 NEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSA  161 (246)
T ss_dssp             CTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTST
T ss_pred             CccccccccceeeeecCCccccCCCCEEEEEECCCCCCC
Confidence            421      378899987777899999999999998654

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.30  E-value=2.8e-11  Score=104.46  Aligned_cols=104  Identities=21%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec------CCCCeeEEeEEEEEEcCCCcEEEEEEccCC---
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD------AKGNGFYREGKMVGCDPAYDLAVLKVDVEG---  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~------~~g~~~~~~A~vv~~d~~~DlAvLki~~~~---  189 (229)
                      ...|+||||++ +||||++|++.+...   ....+.|.+..      ..|.  ...++++..+...||||||++.+.   
T Consensus        33 ~~~C~G~lI~~-~~VLTAAHCv~~~~~---~~~~i~V~~G~~~~~~~~~g~--~~~~~i~~~~~~~DIALLkL~~~~~~~  106 (274)
T 2o8l_A           33 TFIASGVVVGK-DTLLTNKHVVDATHG---DPHALKAFPSAINQDNYPNGG--FTAEQITKYSGEGDLAIVKFSPNEQNK  106 (274)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHHTTTT---CGGGEEEEETCCBTTBCTTCC--EEEEEEEECSSSSCCEEEEECCCTTSC
T ss_pred             CEEEEEEEEEC-CEEEEChhhCcccCC---CcceEEEEecccCcccccCcc--EEEEEEEeCCCCCcEEEEEecCccccc
Confidence            46899999997 699999999984210   11346776531      1232  456778888889999999998542   


Q ss_pred             ---CCccceEcCCCCCCCCCCeEEEEecCCCCCCc---eeEeEEc
Q 027022          190 ---FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT---LTTGVTF  228 (229)
Q Consensus       190 ---~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~s---vt~GiVS  228 (229)
                         ..++++.|..+..+..|+.++++|+|.+....   .+.|+|+
T Consensus       107 ~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~  151 (274)
T 2o8l_A          107 HIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKIT  151 (274)
T ss_dssp             CTTTSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCEEEEEECCCCCCCceEEecCceEE
Confidence               35789999877778999999999999875422   3566664

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=99.30  E-value=8.5e-12  Score=103.15  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             ceEEEEEEcC--CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCCCccc--
Q 027022          120 GTGSGFVWDK--FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGFELKP--  194 (229)
Q Consensus       120 ~~GSGfiI~~--~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~~~~~--  194 (229)
                      .-.+||++.+  ++|||||.||+.       +++.+.   .+  +   .+.++++..| +..|+||||++......+.  
T Consensus        16 ~CT~Gf~v~~~~~~~ilTa~Hc~~-------~~~~v~---~~--~---~~~g~vv~~~~~~~D~Avi~i~~~~~~~~~v~   80 (198)
T 2h5c_A           16 LCSVGFSVTRGATKGFVTAGHCGT-------VNATAR---IG--G---AVVGTFAARVFPGNDRAWVSLTSAQTLLPRVA   80 (198)
T ss_dssp             EEECCEEEEETTEEEEEECGGGCC-------TTCEEE---ET--T---EEEEEEEEEECSBSCEEEEEECTTSEEEEEEE
T ss_pred             CCCcCEEEecCCeeEEEECcccCC-------CCCEEE---eC--C---cEEEEEEecCCCCCCEEEEEeCCCCccCceEe
Confidence            4679999965  369999999999       666664   34  2   5689999999 9999999999854212232  


Q ss_pred             -----eEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          195 -----VVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       195 -----l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                           +++..+..+++||+|..+|+|.|    ++.|+|++
T Consensus        81 ~~g~~~~v~g~~~~~vG~~V~~~G~~tg----~t~G~V~~  116 (198)
T 2h5c_A           81 NGSSFVTVRGSTEAAVGAAVCRSGRTTG----YQCGTITA  116 (198)
T ss_dssp             ETTEEEECCBCCCCCTTCEEEEEETTTE----EEEEEEEE
T ss_pred             cCCceEEecCcccCCCCCeEEEeecCcc----eEEEEEEe
Confidence                 24566788999999999999987    68888874

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=99.30  E-value=1.7e-12  Score=105.50  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             cccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEE---ccCCCCcc
Q 027022          117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKV---DVEGFELK  193 (229)
Q Consensus       117 ~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki---~~~~~~~~  193 (229)
                      ...+.||||+|+.+|+||||+||+.       +++..+|++ +  |.  ++.   +.+|+..|||++++   +.+ ..+|
T Consensus        12 ~~~G~GsgF~i~~~g~vVTA~HVv~-------~~~~~~V~~-~--G~--~~~---Vgf~~~~DlA~l~v~~~~~~-g~~P   75 (198)
T 1mbm_A           12 SSYGTGSVWTRNNEVVVLTASHVVG-------RANMATLKI-G--DA--MLT---LTFKKNGDFAEAVTTQSELP-GNWP   75 (198)
T ss_dssp             SSEEEEEEEEETTEEEEEEEHHHHC-------TTCEEEEEE-T--TE--EEE---EECEEETTEEEEEECTTTSC-SCCC
T ss_pred             ccCCccceEEECCCeEEEEeeeEEc-------cCceEEEEE-C--CE--EEE---eecccCCcEEEEEeeccCCC-CCCc
Confidence            3567899999999999999999999       778888988 5  44  444   88889999999999   543 5678


Q ss_pred             ceEcCCCCCCCCCCeE
Q 027022          194 PVVLGTSHDLRVGQSC  209 (229)
Q Consensus       194 ~l~lg~s~~~~~G~~V  209 (229)
                      +++|+.   +++|+.-
T Consensus        76 ~l~las---p~vG~a~   88 (198)
T 1mbm_A           76 QLHFAQ---PTTGPAS   88 (198)
T ss_dssp             BCCBCC---CCSEEEE
T ss_pred             ccccCC---CcccceE
Confidence            899954   7888843

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.25  E-value=4.1e-11  Score=103.05  Aligned_cols=104  Identities=22%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec------CCCCeeEEeEEEEEEcCCCcEEEEEEccCC---
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD------AKGNGFYREGKMVGCDPAYDLAVLKVDVEG---  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~------~~g~~~~~~A~vv~~d~~~DlAvLki~~~~---  189 (229)
                      ...|+||||++ .||||++|++.+...   ....+.|.+..      ..|+  ...++++..+...||||||++.+.   
T Consensus        33 ~~~CgG~lI~~-~~VLTAAHCv~~~~~---~~~~i~V~~G~~~~~~~~~g~--~~~~~i~~~~~~~DIALLkL~~~~~~~  106 (268)
T 1wcz_A           33 TFIASGVVVGK-DTLLTNKHVVDATHG---DPHALKAFPSAINQDNYPNGG--FTAEQITKYSGEGDLAIVKFSPNEQNK  106 (268)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHGGGTT---CGGGEEEEETCCBTTBCTTCC--EEEEEEEECSSSSCCEEEEECCCTTSC
T ss_pred             CEEEEEEEEEC-CEEEEChhhCCCccC---CcceEEEEecccCcccccCCc--EEEEEEecCCCCCcEEEEEecCccccc
Confidence            46899999997 699999999984210   12347776531      1232  346778888889999999998542   


Q ss_pred             ---CCccceEcCCCCCCCCCCeEEEEecCCCCCC---ceeEeEEc
Q 027022          190 ---FELKPVVLGTSHDLRVGQSCFAIGNPYGFED---TLTTGVTF  228 (229)
Q Consensus       190 ---~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~---svt~GiVS  228 (229)
                         ..+.++.|..+..+..|+.++++|+|.+...   ..+.|+|+
T Consensus       107 ~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~~~~~~~~~g~i~  151 (268)
T 1wcz_A          107 HIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKIT  151 (268)
T ss_dssp             CHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSSTTCEEEEEEEEE
T ss_pred             ccccccceeecccccccCCCCEEEEEECCCCCCCceEEeecceEE
Confidence               2378888987667899999999999987532   23566664

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.23  E-value=2e-11  Score=99.81  Aligned_cols=93  Identities=18%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             ceEEEEEEcCC--cEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCCCccceE
Q 027022          120 GTGSGFVWDKF--GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGFELKPVV  196 (229)
Q Consensus       120 ~~GSGfiI~~~--G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~~~~~l~  196 (229)
                      .-.+||++.++  +|||||+||+.       +.+++.  +.+  +.  ...+++...+ +..|+||||++.+....+.+.
T Consensus        13 ~CT~Gfiv~~~g~~~ilT~~Hv~~-------~~~~v~--~~~--~~--~~~g~~~~~~~~~~DiAlikl~~~~~~~~~v~   79 (187)
T 1hpg_A           13 RCSAAFNVTKGGARYFVTAGHCTN-------ISANWS--ASS--GG--SVVGVREGTSFPTNDYGIVRYTDGSSPAGTVD   79 (187)
T ss_dssp             EEECCEEEEETTEEEEEECHHHHT-------TCSEEE--SST--TC--CEEEEEEEEECSBSCEEEEEECSSCCCCSEEE
T ss_pred             cCcceEEEEECCeeEEEECcccCC-------CCCeEE--eCC--Cc--eeEEEEeCccCCCCCEEEEEeCCCCCcCceEE
Confidence            45679999875  49999999999       555543  333  33  3346666666 788999999985321223333


Q ss_pred             --------cCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          197 --------LGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       197 --------lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                              +..+..+++|++|+++|+|.|    ++.|+|++
T Consensus        80 ~~~g~~~~i~~~~~~~~G~~v~~~G~~~g----~t~G~v~~  116 (187)
T 1hpg_A           80 LYNGSTQDISSAANAVVGQAIKKSGSTTK----VTSGTVTA  116 (187)
T ss_dssp             CSSSCEEECCEECCCCTTCEEEEEETTTE----EEEEEEEE
T ss_pred             ecCCceeeeccccCCCCCCEEEEEEcCCC----EeEEEEEE
Confidence                    445778999999999999976    68888863

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.21  E-value=3.6e-11  Score=98.15  Aligned_cols=100  Identities=22%  Similarity=0.324  Sum_probs=69.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe--cCCCCeeEEe-EEEEEEcCCCcEEEEEEccCC-------
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF--DAKGNGFYRE-GKMVGCDPAYDLAVLKVDVEG-------  189 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~--~~~g~~~~~~-A~vv~~d~~~DlAvLki~~~~-------  189 (229)
                      +.|+||+|++ .|||||+|++.+..    ....+.+...  ..+|.  .+. ++++.++...||||||++...       
T Consensus        22 ~~c~G~lI~~-~~VLTaaHcv~~~~----~~~~v~v~~~~~~~~~~--~~~~~~i~~~~~~~DiAll~l~~~~~~~~~~~   94 (204)
T 2vid_A           22 KSATGFVVGK-NTILTNKHVSKNYK----VGDRITAHPNSDKGNGG--IYSIKKIINYPGKEDVSVIQVEERAIERGPKG   94 (204)
T ss_dssp             SSCEEEEEET-TEEEECHHHHTTCC----TTCEEEESCCSSSCCSC--EEEEEEEEECSSSSCCEEEEECSEEEEEETTE
T ss_pred             eeEEEEEEEC-CEEEEChhHCCCcc----CCceEEEEeccccCCCc--EEEeeEEecCCCCCeEEEEEEcCccccccccc
Confidence            5799999997 59999999998421    1224444221  12344  344 677888889999999997421       


Q ss_pred             ----CCccceEcCCCCCCCCCCeEEEEecCCCCCC----ceeEeEEc
Q 027022          190 ----FELKPVVLGTSHDLRVGQSCFAIGNPYGFED----TLTTGVTF  228 (229)
Q Consensus       190 ----~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~----svt~GiVS  228 (229)
                          ..++++.|.+  .+..|+.++++|+|.+...    ..+.|+|+
T Consensus        95 ~~~~~~v~pi~l~~--~~~~g~~~~~~G~g~~~~~~~~~~~~~g~v~  139 (204)
T 2vid_A           95 FNFNDNVTPFKYAA--GAKAGERIKVIGYPHPYKNKYVLYESTGPVM  139 (204)
T ss_dssp             EEHHHHCCCCCBCS--CCCTTCEEEEEECCCCCC--CCCEEEEEEEE
T ss_pred             ccccccccccccCC--cCCCCCEEEEEeCCCCCCCCcceEeeccEEe
Confidence                1246777753  6889999999999987654    35667775

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=99.17  E-value=2.1e-11  Score=99.86  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=67.2

Q ss_pred             ceEEEEEEcC--CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCCCcc---
Q 027022          120 GTGSGFVWDK--FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGFELK---  193 (229)
Q Consensus       120 ~~GSGfiI~~--~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~~~~---  193 (229)
                      .--+||++.+  ++|||||+||+.       +++.+.+           +.+++++.| +..|+||||++......+   
T Consensus        15 ~CT~Gf~v~~~~~~~ilTa~Hc~~-------~g~~v~~-----------~~g~v~~~~~~~~D~Alikl~~~~~~~~~v~   76 (186)
T 2pfe_A           15 RCSIGFSVRQGSQTGFATAGHCGS-------TGTRVSS-----------PSGTVAGSYFPGRDMGWVRITSADTVTPLVN   76 (186)
T ss_dssp             EEECCEEEEETTEEEEEECGGGCC-------TTCEEBT-----------TTEEEEEEECSBSCEEEEEECTTSEEEEEEE
T ss_pred             cEEeeEEEEcCCeeEEEEChhhCC-------CCCEEEE-----------eeEEEEecCCCCCCEEEEEeCCCccccccee
Confidence            3568999964  479999999999       6666654           247888887 899999999985422222   


Q ss_pred             -----ceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          194 -----PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       194 -----~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                           ++++..+..+++|++|..+|++.|    ++.|+|++
T Consensus        77 ~~~g~~~~i~~~~~~~vG~~vc~~G~~tG----~t~G~vs~  113 (186)
T 2pfe_A           77 RYNGGTVTVTGSQEAATGSSVCRSGATTG----WRCGTIQS  113 (186)
T ss_dssp             CSSSCEEECCBCCCCCTTCEEEEEETTTE----EEEEEEEE
T ss_pred             ccCCceEecCCCCCCCCCCeEEEEEeCCc----eEEEEEEE
Confidence                 334666788999999999999987    67788763

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.14  E-value=8.8e-11  Score=96.37  Aligned_cols=85  Identities=19%  Similarity=0.196  Sum_probs=65.1

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCCCcc-----
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGFELK-----  193 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~~~~-----  193 (229)
                      .-.+||++++  |||||+||++       +++.+  ++.+         +++++.| +..|+||||++......+     
T Consensus        16 ~CT~Gf~~~~--~ilTa~Hc~~-------~~~~v--~~~d---------g~v~~~~~~~~DiAlikl~~~~~~~~~v~~~   75 (189)
T 2ea3_A           16 RCSIGFAVNG--GFITAGHCGR-------TGATT--ANPT---------GTFAGSSFPGNDYAFVRTGAGVNLLAQVNNY   75 (189)
T ss_dssp             EEECCEEETT--EEEECGGGCC-------TTCEE--ETTT---------EEEEEEECSBSCEEEEEECTTCEEEEEEECS
T ss_pred             CCccCEEccC--eEEEchhcCC-------CCCEE--EeCC---------cEEEeeCCCCCCEEEEEECCCCccccceEec
Confidence            4678999975  9999999998       55554  3222         6778888 899999999985421122     


Q ss_pred             ---ceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          194 ---PVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       194 ---~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                         ++++..+..+++|++|..+|+|.|    ++.|+|+
T Consensus        76 ~g~~v~l~~s~~~~vG~~v~~~G~~tG----~t~G~Vs  109 (189)
T 2ea3_A           76 SGGRVQVAGHTAAPVGSAVCRSGSTTG----WHCGTIT  109 (189)
T ss_dssp             SSCEEECCBCCCCCTTCEEEEEETTTE----EEEEEEE
T ss_pred             CCceeecCCCcCCCCCCEEEEEEeCCc----cEEEEEE
Confidence               345777788999999999999987    5778776

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.03  E-value=2.8e-10  Score=92.17  Aligned_cols=93  Identities=18%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             ceEE-EEEEcC--CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEc-CCCcEEEEEEccCCC----C
Q 027022          120 GTGS-GFVWDK--FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD-PAYDLAVLKVDVEGF----E  191 (229)
Q Consensus       120 ~~GS-GfiI~~--~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d-~~~DlAvLki~~~~~----~  191 (229)
                      ..+| ||++..  ++|||||+|++.       +...+.+..  +++.  . .+++...+ +..||||||++....    .
T Consensus        12 ~~ct~Gf~v~~~~~~~ilTaaHcv~-------~~~~~~v~~--~~~~--~-~g~~~~~~~~~~DiAll~l~~~~~~~~~~   79 (185)
T 2qa9_E           12 GRCSLGFNVRSGSTYYFLTAGHCTD-------GATTWWANS--ARTT--V-LGTTSGSSFPNNDYGIVRYTNTTIPKDGT   79 (185)
T ss_dssp             CEEECCEEEEETTEEEEEECHHHHT-------TCSEEESST--TSCS--E-EEEEEEEECSBSCEEEEEECCSSSCCCCE
T ss_pred             CcEeccEEEEECCceEEEECcccCC-------CCCcEEecC--CCce--E-eEEEeccccCCCCEEEEEecCCCccccCc
Confidence            3455 999964  469999999999       566665532  2222  2 35667777 889999999985222    2


Q ss_pred             ccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          192 LKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       192 ~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      ++++++..+..+..|+.++++|++.+    .+.|+++
T Consensus        80 v~~~~l~~~~~~~~g~~v~~~Gw~~~----~~~g~l~  112 (185)
T 2qa9_E           80 VGGQDITSAANATVGMAVTRRGSTTG----THSGSVT  112 (185)
T ss_dssp             ETTEECCEECCCCTTCEEEEEETTTE----EEEEEEE
T ss_pred             cceeeeCCcccCCCCCEEEEecCCCc----eeEeEEE
Confidence            46777865667899999999999764    4556553

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=98.68  E-value=1.2e-08  Score=84.06  Aligned_cols=68  Identities=22%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             cccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceE
Q 027022          117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVV  196 (229)
Q Consensus       117 ~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~  196 (229)
                      ...++|+||.|+.+++|||++|||.       +.+. .|+ .++  .  +|   .+.+|+..|+|+|++......+|.++
T Consensus        27 ~~~GsGt~F~i~g~~~VvTA~HVVg-------~~~~-vVt-~~g--~--r~---~~~f~~~~D~All~i~~~~g~~P~lK   90 (213)
T 3fan_A           27 SSMGSGGVFTIDGKIKCVTAAHVLT-------GNSA-RVS-GVG--F--NQ---MLDFDVKGDFAIADCPNWQGVAPKAQ   90 (213)
T ss_dssp             SSEEEEEEEEETTEEEEEEEGGGSB-------TTEE-EEE-ETT--E--EE---EEECEEETTEEEEECTTCCSCCCBCC
T ss_pred             cCCCceEEEEECCcEEEEEeccEeC-------CCCE-EEe-cCC--c--EE---EEEecCCCcEEEEEccCcCCCCCcce
Confidence            4678899999998889999999999       5555 444 443  2  33   35789999999999965446799999


Q ss_pred             cCCC
Q 027022          197 LGTS  200 (229)
Q Consensus       197 lg~s  200 (229)
                      |+..
T Consensus        91 lA~~   94 (213)
T 3fan_A           91 FCED   94 (213)
T ss_dssp             BCCT
T ss_pred             eeee
Confidence            9853

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=98.61  E-value=2.2e-08  Score=80.78  Aligned_cols=84  Identities=20%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             eEE-EEEEcC--CcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCcc-ce-
Q 027022          121 TGS-GFVWDK--FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK-PV-  195 (229)
Q Consensus       121 ~GS-GfiI~~--~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~-~l-  195 (229)
                      .+| ||+|..  ++|||||+|++.       +...+.+-..+            -...+..|+||||++.+ ..++ .+ 
T Consensus        13 ~ct~G~~v~~~~~~~vlTaaHc~~-------~~~~~~~G~~~------------~~~~~~~DiAlikl~~~-~~~~~~v~   72 (181)
T 2sga_A           13 RCSLGFNVSVNGVAHALTAGHCTN-------ISASWSIGTRT------------GTSFPNNDYGIIRHSNP-AAADGRVY   72 (181)
T ss_dssp             EEECCEEEEETTEEEEEECHHHHT-------TCSEETTEEEE------------EEECSBSCEEEEEESCG-GGCCCEEE
T ss_pred             cEeccEEEEECCceEEEECcccCC-------CCCceeeccee------------CCcCCCCCEEEEEccCC-CcccceEE
Confidence            455 999975  369999999998       44443222211            12346789999999853 2222 22 


Q ss_pred             -------EcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          196 -------VLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       196 -------~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                             .+..+..+++|+.|.++|++.+    .+.|+|+
T Consensus        73 ~i~~~~~~~~~~~~~~~G~~v~~~G~~~~----~t~G~v~  108 (181)
T 2sga_A           73 LYNGSYQDITTAGNAFVGQAVQRSGSTTG----LRSGSVT  108 (181)
T ss_dssp             CSSSCEEECCEECCCCTTCEEEEEETTTE----EEEEEEE
T ss_pred             ecCCcceeecccccCCCCCEEEEeecCCC----ccEEEEE
Confidence                   2334567899999999998865    3556654

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=97.99  E-value=1.8e-05  Score=64.86  Aligned_cols=97  Identities=19%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             cceEEEEEEcCCc--EEEEccccccccccCCCCcceEEEEEecCCCCee---EEeEEEEEEcCCCcEEEEEEccCCC---
Q 027022          119 EGTGSGFVWDKFG--HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGF---YREGKMVGCDPAYDLAVLKVDVEGF---  190 (229)
Q Consensus       119 ~~~GSGfiI~~~G--~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~---~~~A~vv~~d~~~DlAvLki~~~~~---  190 (229)
                      .-.|.|+.|..+|  +|||++||+.+       .+.......+  |+..   .+...+-..|+..|+|||++.....   
T Consensus        26 ~h~G~g~~V~~~G~~~LlTA~Hv~~~-------~~~~~~~~k~--g~~ip~~~~~~~~~~~d~~~D~all~vp~~~~s~l   96 (191)
T 1zyo_A           26 TTIGFGCRTKIDGEDCLLTAHHVWCN-------SMRPTGLAKA--GKQVSVEDWEISMSSSDKMLDFAIVRVPTHVWSKL   96 (191)
T ss_dssp             EEEEEEEEEEC--CEEEEECHHHHTS-------SSCCCEEEET--TEEEECCSCEEEEEECCTTTCEEEEECCHHHHHHH
T ss_pred             eEEEEEEEEEECCCcEEEEChhhCcC-------CcceeeecCC--CCEEEcccceeeEccCCCCCcEEEEEcCCChhhhc
Confidence            4478888886444  99999999983       2111112222  2211   1223444457789999999964321   


Q ss_pred             CccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEE
Q 027022          191 ELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT  227 (229)
Q Consensus       191 ~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiV  227 (229)
                      ....+.|.   ....++.|-.+|+|-+..+....|+.
T Consensus        97 g~~~a~~~---~~~~~~~vt~yg~~~~~~~~s~~g~~  130 (191)
T 1zyo_A           97 GVKSTPLV---CPSSKDVITCYGGSSSDCLMSGVGSS  130 (191)
T ss_dssp             TCCCCCBC---CCCSCEEEEEEEESSTTSEEEEEEEE
T ss_pred             CcceeEee---cCCCCccEEEEeecCCCCEeecccce
Confidence            24454453   34469999999998765655556643

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=97.93  E-value=0.00014  Score=59.83  Aligned_cols=93  Identities=18%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--CCeeEEeEEEEEEcC-----CCcEEEEEEccCC--
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--GNGFYREGKMVGCDP-----AYDLAVLKVDVEG--  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g~~~~~~A~vv~~d~-----~~DlAvLki~~~~--  189 (229)
                      ....+|.+|++ .+|||++|.+.+.     ....+.|.+-..+  .....+..+-+...+     ..||||||++.+-  
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~~~~DiALl~L~~~~~~   96 (224)
T 1pq7_A           23 GPWCGGSLLNA-NTVLTAAHCVSGY-----AQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPS   96 (224)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHTTS-----CGGGEEEEESCSBSSSSSEEECEEEEEECTTCBTTBTCCEEEEESSCCCC
T ss_pred             CeEEEEEEecC-CEEEEcHHccCCC-----CCCceEEEeCcceecCCCEEEEEEEEEECCCCCCCCCCEEEEEeCCCCcC
Confidence            35799999997 6999999999842     2355677663211  111134444454554     4699999998542  


Q ss_pred             -CCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          190 -FELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 -~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                       ....++.|.. ......|+.+++.|+...
T Consensus        97 ~~~v~picL~~~~~~~~~g~~~~v~GwG~~  126 (224)
T 1pq7_A           97 GGNIGYARLAASGSDPVAGSSATVAGWGAT  126 (224)
T ss_dssp             BTTBCCCCBCCTTCCCCTTCEEEEEESCCS
T ss_pred             CCcccceecCCcccCCCCCCEEEEEecCCc
Confidence             1356777753 345689999999998653

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=97.92  E-value=0.00016  Score=59.80  Aligned_cols=90  Identities=21%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC---------CCcEEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP---------AYDLAVLKV  185 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~---------~~DlAvLki  185 (229)
                      ...+|.+|++ -+|||++|.+.       +...+.|.+-..+     +....+..+-+...+         ..||||||+
T Consensus        28 ~~CgGtLIs~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L   99 (236)
T 1elt_A           28 HTCGGSLIRQ-GWVMTAAHCVD-------SARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRL   99 (236)
T ss_dssp             EEEEEEEEET-TEEEECHHHHS-------SCCCEEEEESCSBTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEEEEE
T ss_pred             eEEEEEEEeC-CEEEECHHhhC-------CcCceEEEEccccCCCCCCCcEEEEEEEEEECCCCCCCCCCCCccEEEEEC
Confidence            5799999997 69999999998       4466777764321     111133344333332         569999999


Q ss_pred             ccCC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          186 DVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      +.+-   ....|+.|.... .+..|+.+++.|+...
T Consensus       100 ~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~  135 (236)
T 1elt_A          100 NTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKT  135 (236)
T ss_dssp             SSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCS
T ss_pred             CCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCc
Confidence            8542   235677775543 3678999999998653

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=97.90  E-value=0.00024  Score=58.92  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+-..+     +....+..+-+...+       ..||||||++
T Consensus        25 ~~~CgGtLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~   99 (240)
T 1mza_A           25 HHVCGGVLIDP-QWVLTAAHCQYRFT----KGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQ   99 (240)
T ss_dssp             EEEEEEEEEET-TEEEECGGGSCTTC----SCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSCSSSSSCCEEEEES
T ss_pred             ceEEEEEEecC-CEEEECHHhCCCCC----CCCCeEEEeCceecCCCCCceEEEEEEEEEeCCCccCCCCCceEEEEEeC
Confidence            45799999997 69999999997321    2355667663211     111133333333322       4699999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.|.....+..|+.+++.|+...
T Consensus       100 ~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~  133 (240)
T 1mza_A          100 TAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGAT  133 (240)
T ss_dssp             SCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCS
T ss_pred             CCcccCCceeeeecCCcccCCCCCEEEEEeCCcC
Confidence            542   2356777765456789999999998643

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=97.87  E-value=0.00026  Score=58.32  Aligned_cols=88  Identities=25%  Similarity=0.299  Sum_probs=59.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       +...+.|.+-..+     +....+..+.+...+       ..||||||++.
T Consensus        25 ~~CgGtLI~~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   96 (228)
T 1fxy_A           25 GFCGGTILSE-FYILTAAHCLY-------QAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKT   96 (228)
T ss_dssp             EEEEEEECSS-SEEEECGGGTT-------SCSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTTTTBTCCEEEEESS
T ss_pred             eeEEEEEeeC-CEEEECHHHCC-------CCCcEEEEECccCccccCCCcEEEEEEEEEECCCCCCCCCcCcEEEEEECC
Confidence            4699999997 69999999997       3455667664321     111133344443333       35999999985


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      +-   ....|+.|.. .....|+.+++.|+..
T Consensus        97 ~v~~~~~v~picLp~-~~~~~~~~~~v~GwG~  127 (228)
T 1fxy_A           97 PITFRMNVAPASLPT-APPATGTKCLISGWGN  127 (228)
T ss_dssp             CCCCBTTBCCCCCCS-SCCCTTCEEEEEESSC
T ss_pred             cccCCCceeccCCCC-CCCCCCCEEEEEecCc
Confidence            42   2356777754 4577999999999864

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=97.87  E-value=0.00035  Score=57.19  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcCC-------CcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDPA-------YDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~~-------~DlAvLki~  186 (229)
                      ....+|.+|++ .+|||++|.+.         ..+.|.+...     +.....+..+-+...++       .|||||+++
T Consensus        27 ~~~CgGtLI~~-~~VLTAAHC~~---------~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~   96 (227)
T 3fzz_A           27 KMFCGGFLVRD-KFVLTAAHCKG---------RSMTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLV   96 (227)
T ss_dssp             EEEEEEEEEET-TEEEECTTCCC---------EEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEES
T ss_pred             eeEEEEEEEeC-CEEEECcccCC---------CCcEEEEcccccCCCCCCceEEEEEEEEECcCCCCCCCcCCEEEEEEC
Confidence            45799999997 69999999997         3455655321     11111333444444443       599999997


Q ss_pred             cCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....|+.|.... .+..|+.+++.|+..
T Consensus        97 ~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  130 (227)
T 3fzz_A           97 RNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK  130 (227)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSC
T ss_pred             CcCCCCCcccccCCCCcccCCCCCCEEEEEECCc
Confidence            542   235666665433 468899999999864

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=97.83  E-value=0.00038  Score=52.60  Aligned_cols=87  Identities=17%  Similarity=0.143  Sum_probs=55.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ....|.+|++ -+|||++|.+.+        ..+.|.+-..     +.....+..+-+...+       ..||||||++.
T Consensus        25 ~~CgGsLIs~-~~VLTAAHC~~~--------~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~   95 (131)
T 1yph_C           25 HFCGGSLINE-NWVVTAAHCGVT--------TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLST   95 (131)
T ss_dssp             EEEEEEEEET-TEEEECGGGCCC--------TTSEEEESCSBTTCSSSCCEEEEEEEEEECTTCCTTTCCSCCEEEEESS
T ss_pred             EEEEEEEeeC-CEEEECHHHCCC--------CCeEEEEeEccCCCCCCceEEEEEEEEEeCCCCCCCCCCCCEEEEEECC
Confidence            4699999997 699999999973        2334544211     0111123333333222       46999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNP  215 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P  215 (229)
                      +-   ....|+.|...+ .+..|+.+++.|..
T Consensus        96 ~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG  127 (131)
T 1yph_C           96 AASFSQTVSAVCLPSASDDFAAGTTCVTTGWG  127 (131)
T ss_dssp             CCCCBTTBCCCBCCCTTCCCCTTCEEEEEESC
T ss_pred             cccCCCcCcceECCCcccCCCCCCEEEEEcCC
Confidence            42   235677776543 36789999999974

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=97.82  E-value=0.00036  Score=57.92  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC---------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP---------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~---------~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+     +....+..+-+...+         ..||||||
T Consensus        27 ~~~CgGsLI~~-~~VLTAAHC~~-------~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~   98 (240)
T 1gvk_B           27 AHTCGGTLIRQ-NWVMTAAHCVD-------RELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLR   98 (240)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGC-------SCCCEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEEEE
T ss_pred             CceEEEEEeeC-CEEEECHHHCC-------CCcceEEEECCeecccCCCcceEEEEEEEEECCCCCCCCCCCCCcEEEEE
Confidence            35799999997 69999999998       4456777763211     111123333333332         56999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....++.|.... .+..|+.+++.|+...
T Consensus        99 L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~  135 (240)
T 1gvk_B           99 LAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLT  135 (240)
T ss_dssp             ESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBS
T ss_pred             ECCccccCCCccceecCCCCCCCCCCCEEEEEecCcC
Confidence            98542   124566665443 3678999999998643

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=97.79  E-value=0.00048  Score=56.19  Aligned_cols=88  Identities=17%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcCC-------CcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDPA-------YDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~~-------~DlAvLki~  186 (229)
                      ....+|.+|++ .+|||++|.+.         +.+.|.+...     +.....+..+-+...+.       .||||||++
T Consensus        27 ~~~CgGtLI~~-~~VLTAAhC~~---------~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~   96 (224)
T 3rp2_A           27 RVICGGFLISR-QFVLTAAHCKG---------REITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLE   96 (224)
T ss_dssp             EEEEEEEESSS-SEEEECGGGCC---------SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCSSSCCSCCEEEEES
T ss_pred             EEEEEeEEeeC-CEEEEchhcCC---------CCcEEEEeccccCcCCCCcEEEEEEEEEECCCccCCCCCccEEEEEcC
Confidence            45799999997 69999999997         2455655321     11111333444444433       699999997


Q ss_pred             cCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.|.... .+..|+.+++.|+..
T Consensus        97 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~  130 (224)
T 3rp2_A           97 KKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK  130 (224)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSE
T ss_pred             CCcccCCcccceecCCcccCCCCCCEEEEEeCCC
Confidence            542   134566664433 468899999999853

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=97.79  E-value=0.00054  Score=56.80  Aligned_cols=93  Identities=14%  Similarity=0.085  Sum_probs=60.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-------CCeeEEeEEEEEEcC-CCcEEEEEEccCC-
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-------GNGFYREGKMVGCDP-AYDLAVLKVDVEG-  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-------g~~~~~~A~vv~~d~-~~DlAvLki~~~~-  189 (229)
                      ....+|.+|++ -+|||++|.+.+.     ....+.|.+-..+       .....+..+-+.+++ ..|||||+++.+- 
T Consensus        22 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~p~~~DiALl~L~~~v~   95 (240)
T 1si5_H           22 KHICGGSLIKE-SWVLTARQCFPSR-----DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAV   95 (240)
T ss_dssp             SEEEEEEEEET-TEEEEEGGGCSSS-----CGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSSTTCEEEEEESSCCC
T ss_pred             CeEEEEEEeeC-CEEEEhHHhcCCC-----CCccEEEEEeeeecCCCCCCCcceEEEEEEEEcCCCCCcEEEEEECCccc
Confidence            35799999997 6999999999842     2456777764211       001123333233444 7899999998542 


Q ss_pred             --CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          190 --FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 --~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                        ....++.|... ..+..|+.+++.|+...
T Consensus        96 ~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  126 (240)
T 1si5_H           96 LDDFVSTIDLPNYGSTIPEKTSCSVYGWGYT  126 (240)
T ss_dssp             CSSSCCCCBCCCTTCCCCTTCEEEEEESSCC
T ss_pred             cCCceeccCcCCcCCCCCCCCEEEEEEeCCC
Confidence              23567777553 35778999999998643

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=97.78  E-value=0.00057  Score=56.77  Aligned_cols=90  Identities=17%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------C--CcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------A--YDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~--~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.       ....+.|.+-..+     .....+..+-+...+       .  .||||||
T Consensus        27 ~~~CgGtLI~~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~   98 (241)
T 1bru_P           27 RHTCGGTLVDQ-SWVLTAAHCIS-------SSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLK   98 (241)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------TTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCGGGCCCCEEEE
T ss_pred             eeEEEeEEeeC-CEEEEcHHhcc-------cCCceEEEEEcccccCCCCccEEEEEEEEEECCCCCCCCCCCCCcEEEEE
Confidence            35799999997 69999999998       3355677763211     011133333333332       2  7999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....|+.|.... .+..|+.+++.|+..
T Consensus        99 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  134 (241)
T 1bru_P           99 LASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGR  134 (241)
T ss_dssp             ESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred             eCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccc
Confidence            98542   235666665443 367899999999864

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=97.78  E-value=0.00045  Score=57.11  Aligned_cols=95  Identities=17%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-------CCeeEEeE-EEEEEcCCCcEEEEEEccCC-
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-------GNGFYREG-KMVGCDPAYDLAVLKVDVEG-  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-------g~~~~~~A-~vv~~d~~~DlAvLki~~~~-  189 (229)
                      ....+|.+|++ -+|||++|.+.+...   +...+.|.+-..+       .....+.. +++......|||||+++.+- 
T Consensus        21 ~~~CgGtLI~~-~~VLTAAHC~~~~~~---~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~~~DiALl~L~~~v~   96 (234)
T 2asu_B           21 QHFCGGSLVKE-QWILTARQCFSSCHM---PLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVT   96 (234)
T ss_dssp             CEEEEEEEEET-TEEEEEGGGSSCTTC---CCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECSTTCCEEEEEESSCCC
T ss_pred             CEEEEEEEEeC-CEEEECHHHcCCCCC---CcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCCCCCeEEEEeCCcCc
Confidence            45799999997 699999999974211   2345666653211       11112333 33333346899999998542 


Q ss_pred             --CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          190 --FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 --~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                        ..+.|+.|.... .+..|+.+++.|+...
T Consensus        97 ~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  127 (234)
T 2asu_B           97 LNQRVALICLPPEWYVVPPGTKCEIAGWGET  127 (234)
T ss_dssp             CSSSSCCCBCCCTTCCCCTTCEEEEEESSCC
T ss_pred             CCCcEeccCCCCccccCCCCCEEEEEeCCcc
Confidence              235677775543 4678999999998643

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=97.78  E-value=0.0004  Score=56.93  Aligned_cols=93  Identities=15%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC----C-Ce-eEEeEEEEEE---c---CCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK----G-NG-FYREGKMVGC---D---PAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~----g-~~-~~~~A~vv~~---d---~~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+.     +...+.|.+-..+    + .. ..+..+-+..   +   ...|||||+++
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~~~-----~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DIALl~L~   96 (225)
T 1a7s_A           23 RHFCGGALIHA-RFVMTAASCFQSQ-----NPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLD   96 (225)
T ss_dssp             EEEEEEEEEET-TEEEECGGGC---------CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSSCBTTTTBSCCEEEEES
T ss_pred             CcEEEEEEeeC-CEEEEchhccCCC-----CCCceEEEEeeeECCCCCCcceeEEeEEEEecccccCCCCcCCEEEEEcC
Confidence            35699999997 6999999999842     2345667664221    1 00 1233322222   2   34699999998


Q ss_pred             cCC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.|.... .+..|+.+++.|+...
T Consensus        97 ~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~  131 (225)
T 1a7s_A           97 REANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQ  131 (225)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCS
T ss_pred             CcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcC
Confidence            542   135666665433 3578999999998653

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=97.77  E-value=0.00046  Score=56.62  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+.     ....+.|.+-..+     +....+..+-+...+       ..||||||++
T Consensus        23 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~   96 (228)
T 2xw9_A           23 AHLCGGVLVAE-QWVLSAAHCLEDA-----ADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLS   96 (228)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGSSC-----TTCCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCCTTCCEEEEES
T ss_pred             CeEEEEEEEeC-CEEEEcHHhCCCC-----CCCceEEEEcccccCCCCCcceEEEEEEEEeCCCCCCCCCCCcEEEEEeC
Confidence            35799999997 6999999999732     2346677764211     111133333333333       4699999998


Q ss_pred             cCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....|+.|... ..+..|+.+++.|+..
T Consensus        97 ~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~  130 (228)
T 2xw9_A           97 EKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGI  130 (228)
T ss_dssp             SCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSC
T ss_pred             CCcccCCCeeecccCCcccCCCCCCEEEEEEecc
Confidence            542   13556666543 4578899999999864

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=97.77  E-value=0.00052  Score=56.71  Aligned_cols=94  Identities=16%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC---------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP---------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~---------~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+...+     .....+..+-+...+         ..|||||+
T Consensus        28 ~~~CgGtLI~~-~~VLTAAHC~~~~~----~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~  102 (247)
T 3mhw_U           28 TYVCGGSLISP-CWVISATHCFIDYP----KKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLK  102 (247)
T ss_dssp             EEEEEEEEEET-TEEEECGGGTTTSC----CGGGEEEEESCCBSSSCCTTCEEEEEEEEEECTTCEEC-CCEESCCEEEE
T ss_pred             ceEEEEEEEeC-CEEEEcHHhCcCCC----CCccEEEEeccccccCCCCCCEEEEEEEEEECCCCCCCcCCCCCcEEEEE
Confidence            45799999997 69999999997432    2345666664211     011123333333333         25999999


Q ss_pred             EccC-------CCCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          185 VDVE-------GFELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~-------~~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      ++.+       ...+.++.|... ..+..|+.+++.|+...
T Consensus       103 L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~  143 (247)
T 3mhw_U          103 IRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKE  143 (247)
T ss_dssp             EECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCS
T ss_pred             eCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCc
Confidence            9754       124566666543 45788999999998654

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=97.76  E-value=0.00043  Score=56.79  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC----CCCeeEEeEEEEEEcC-------CCcEEEEEEccC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA----KGNGFYREGKMVGCDP-------AYDLAVLKVDVE  188 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~----~g~~~~~~A~vv~~d~-------~~DlAvLki~~~  188 (229)
                      ...+|.+|++ .+|||++|.+.+..    +...+.|.+-..    .++  .+..+-+...+       ..|||||+++.+
T Consensus        24 ~~CgGtLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~--~~~v~~~~~hp~y~~~~~~~DIALl~L~~~   96 (222)
T 1eq9_A           24 HRCGASILDN-NNVLTAAHCVDGLS----NLNRLKVHVGTNYLSESGD--VYDVEDAVVNKNYDDFLLRNDVALVHLTNP   96 (222)
T ss_dssp             EEEEEEECSS-SEEEECHHHHTTCS----CGGGEEEEESCSBTTSCCE--EEEEEEEEECTTCBTTTTBCCCEEEEESSC
T ss_pred             eEEEEEEeeC-CEEEEhhhcCCCCC----CCceEEEEECceecCCCCe--EEEEEEEEECCCCCCCCCCCCEEEEEECCc
Confidence            5799999997 69999999998421    245677776421    122  33433333333       469999999854


Q ss_pred             C---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      -   ....|+.|........|+.+++.|+...
T Consensus        97 v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~  128 (222)
T 1eq9_A           97 IKFNDLVQPIKLSTNDEDLESNPCTLTGWGST  128 (222)
T ss_dssp             CCCBTTBCCCEECSCCTTCTTSEEEEEECCCS
T ss_pred             cccCCceEccCCCCCCcCCCCCEEEEEccccc
Confidence            2   2367788866555478999999998643

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=97.76  E-value=0.00065  Score=55.57  Aligned_cols=88  Identities=16%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcCC-------CcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDPA-------YDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~~-------~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.         +.+.|.+...     ......+..+-+...++       .||||||++
T Consensus        27 ~~~CgGtLI~~-~~VLTAAhC~~---------~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~   96 (226)
T 4ag1_A           27 SKFCGGFLIRR-NFVLTAAHCAG---------RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLK   96 (226)
T ss_dssp             CEEEEEEEEET-TEEEECGGGCC---------SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             ccEEEEEEEeC-CEEEECcccCC---------CCeEEEeCCcccCCCCCcceEEEEEEEEeCCCCCCCCCcCcEEEEEEC
Confidence            45699999997 69999999997         2455655321     11111233333344443       599999998


Q ss_pred             cCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.|... ..+..|+.+++.|+..
T Consensus        97 ~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~  130 (226)
T 4ag1_A           97 EKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGR  130 (226)
T ss_dssp             SCCCCCSSSCCCCCC-----CCTTCEEEEEESSB
T ss_pred             CCCccCCceeccccCCcccCCCCCCEEEEEECCC
Confidence            542   23456666443 2467899999999864

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=97.75  E-value=0.00053  Score=55.99  Aligned_cols=93  Identities=15%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE---c---CCCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC---D---PAYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~---d---~~~DlAvLki~~  187 (229)
                      ....+|.+|++ .+|||++|.+.+.     ....+.|.+-..+     .....+..+-+..   +   ...|||||+++.
T Consensus        26 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DiALl~L~~   99 (221)
T 1fuj_A           26 SHFCGGTLIHP-SFVLTAAHCLRDI-----PQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSS   99 (221)
T ss_dssp             CCCEEEEEEET-TEEEECGGGGSSS-----CGGGEEEEESCSBTTSCCTTCEEEEEEEEEECCCBTTTTBCCCEEEEESS
T ss_pred             CEEEEEEEecC-CEEEEchHhcCcC-----CCCceEEEEeeeeccCCCCceEEEEEEEEEeCCCCCCCCcccEEEEEeCC
Confidence            35699999997 6999999999842     2345677664211     0111222222222   2   346999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....++.|...+ .+..|+.+++.|+..-
T Consensus       100 ~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~  133 (221)
T 1fuj_A          100 PANLSASVATVQLPQQDQPVPHGTQCLAMGWGRV  133 (221)
T ss_dssp             CCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBS
T ss_pred             ccccCCcceeeECCCCcCCCCCCCEEEEEEeCCC
Confidence            42   235677775543 3578999999998643

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=97.73  E-value=0.00062  Score=56.88  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEcC-------CCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP-------AYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~-------~~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+      .....+..+-+...+       ..||||||+
T Consensus        40 ~~~CgGtLIs~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L  111 (251)
T 1pyt_D           40 RHTCGGTLITP-NHVLTAAHCIS-------NTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKL  111 (251)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------TTCCEEEEESCSBTTCSCCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEE
T ss_pred             ceEEEeEEecC-CEEEECHHHhC-------CCceEEEEEcccccccCCCCCcEEEEEEEEEECCCCCCCCCCCCEEEEEE
Confidence            35799999997 69999999998       5566777763211      111123333333332       469999999


Q ss_pred             ccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      +.+-   ..+.|+.|...+ .+..|+.+++.|+..
T Consensus       112 ~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  146 (251)
T 1pyt_D          112 AETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGR  146 (251)
T ss_dssp             SSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCC
T ss_pred             CCCcccCCCeeeeEcCCCcccCCCCCEEEEEeccc
Confidence            7542   235677775443 357799999999764

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=97.72  E-value=0.00038  Score=57.62  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=59.8

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC---------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP---------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~---------~~DlAvLk  184 (229)
                      ....+|.+|++ .+|||++|.+.+.     ....+.|.+-..     ++.. .+..+-+...+         ..|||||+
T Consensus        26 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~~~DIALl~   98 (241)
T 1m9u_A           26 SHSCGASLLSS-TSALSASHCVDGV-----LPNNIRVIAGLWQQSDTSGTQ-TANVDSYTMHENYGAGTASYSNDIAILH   98 (241)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHTTC-----CGGGEEEEESCSBTTCCTTCE-EEEEEEEEECTTTTCSSSTTTTCCEEEE
T ss_pred             eeeeEEEEEeC-CEEEecHHhCCCC-----CcceEEEEEEeecCCCCCCce-EEEEEEEEeCCCcCCCCCcccccEEEEE
Confidence            35799999997 6999999999842     245677776321     1111 33344343333         34999999


Q ss_pred             EccCC---CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....|+.|... .....|+.+++.|+...
T Consensus        99 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  135 (241)
T 1m9u_A           99 LATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRT  135 (241)
T ss_dssp             ESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCS
T ss_pred             ecCccccCCCccccCcCCCcCCCCCCCEEEEEeCccc
Confidence            98542   23567777654 32348999999998643

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=97.72  E-value=0.00049  Score=56.53  Aligned_cols=87  Identities=21%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..+     +....+..+-+...+       ..||||||++.
T Consensus        23 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   92 (222)
T 1hj8_A           23 HFCGGSLVNE-NWVVSAAHCYK-------S--RVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSK   92 (222)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------S--SCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTTTTBSCCEEEEESS
T ss_pred             cEEEeEEecC-CEEEECHHhcC-------C--CeEEEEcccccccCCCCcEEEEEEEEEECCCCCCCCCCCcEEEEEECC
Confidence            4699999997 69999999997       2  2344442210     111133333333333       46999999985


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....|+.|.. ..+..|+.+++.|+...
T Consensus        93 ~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~  124 (222)
T 1hj8_A           93 PATLNTYVQPVALPT-SCAPAGTMCTVSGWGNT  124 (222)
T ss_dssp             CCCCSSSCCCCBCCS-SCCCTTCEEEEEESSCC
T ss_pred             cccCCCceeccCCCC-CCCCCCCEEEEEECCCC
Confidence            42   2356777854 45789999999998654

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=97.71  E-value=0.00046  Score=56.34  Aligned_cols=87  Identities=17%  Similarity=0.228  Sum_probs=57.2

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+...     ++....+..+-+...+       ..|||||+++.
T Consensus        23 ~~C~GtLI~~-~~VLTAAhC~~-------~--~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIAll~L~~   92 (223)
T 4i8h_A           23 HFCGGSLINS-QWVVSAAHCYK-------S--GIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKS   92 (223)
T ss_dssp             EEEEEEECSS-SEEEECGGGCC-------S--SCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             cEEEEEEEcC-CEEEecHHhCC-------C--CcEEEEccccccccCCCcEEEEEeEEEECcCCCCCCCcCCEEEEEECC
Confidence            4699999997 69999999998       3  234444321     1111133333344443       46999999985


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....++.|.. .....|+.+++.|+...
T Consensus        93 ~~~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~  124 (223)
T 4i8h_A           93 AASLNSRVASISLPT-SCASAGTQCLISGWGNT  124 (223)
T ss_dssp             CCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCC
T ss_pred             cCcCCCceeceECCC-CCCCCCCEEEEEecccc
Confidence            42   2366777754 44789999999998643

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=97.71  E-value=0.0005  Score=56.84  Aligned_cols=86  Identities=19%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEEcC---------------
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGCDP---------------  176 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d~---------------  176 (229)
                      ....+|.+|++ -+|||++|.+.       +...  |.+-..       .++  .+..+-+...+               
T Consensus        23 ~~~CgGsLIs~-~~VLTAAHC~~-------~~~~--v~~G~~~~~~~~~~~~--~~~v~~~~~Hp~y~~~~~~~~~~~~~   90 (237)
T 2zch_P           23 RAVCGGVLVHP-QWVLTAAHCIR-------NKSV--ILLGRHSLFHPEDTGQ--VFQVSHSFPHPLYDMSLLKNRFLRPG   90 (237)
T ss_dssp             SEEEEEEEEET-TEEEECGGGCC-------SSCE--EEESCSBSSSCCTTCE--EEEEEEEEECTTSCGGGGTSSSCCTT
T ss_pred             CeEEEEEEecC-CEEEEcHHhcC-------CCce--EEEecccccCCCCCcE--EEEEEEEecCCCcchhhhcccccccC
Confidence            35799999997 69999999998       3333  333211       122  23333333322               


Q ss_pred             ---CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          177 ---AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       177 ---~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                         ..|||||+++.+-   ....++.|.. .....|+.+++.|+...
T Consensus        91 ~~~~~DIALl~L~~~~~~~~~v~pi~Lp~-~~~~~~~~~~v~GwG~~  136 (237)
T 2zch_P           91 DDSSHDLMLLRLSEPAELTDAVKVMDLPT-QEPALGTTCYASGWGSI  136 (237)
T ss_dssp             CBCTTCCEEEEESSCCCCCSSCCCCCCCS-SCCCTTCEEEEEESCCS
T ss_pred             CCCCcceEEEEeCCCCccCCcEeeeECCC-CCCCCCCEEEEEeCCcc
Confidence               5699999998542   2356777754 45788999999998653

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=97.70  E-value=0.00042  Score=56.61  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE---c---CCCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC---D---PAYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~---d---~~~DlAvLki~~  187 (229)
                      ....+|.+|++ -+|||++|.+.+.     +...+.|.+-..+     .....+..+-+..   +   ...||||||++.
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DIALl~L~~   96 (218)
T 2z7f_E           23 GHFCGATLIAP-NFVMSAAHCVANV-----NVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNG   96 (218)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHTTS-----CGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCCBTTTTBSCCEEEEESS
T ss_pred             CcEEEEEEccC-CEEEEcHHhcCCC-----CcCcEEEEEeceecCCCCCceEEEEEEEEEccCCCCCCCCCCEEEEEECC
Confidence            35699999997 6999999999842     2345667664321     0011233232222   2   346999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....|+.|.... .+..|+.+++.|+...
T Consensus        97 ~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~  130 (218)
T 2z7f_E           97 SATINANVQVAQLPAQGRRLGNGVQCLAMGWGLL  130 (218)
T ss_dssp             CCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBC
T ss_pred             cCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCC
Confidence            42   235677775543 3678999999998653

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=97.69  E-value=0.0004  Score=57.02  Aligned_cols=89  Identities=18%  Similarity=0.211  Sum_probs=54.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ....+|.+|++ .+|||++|.+.       +...+.+-..+..    ........+.+...+       ..|||||+++.
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~-------~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~DIALl~L~~   94 (234)
T 3s69_A           23 GFFCSGTLINE-EWVLTAAHCDN-------TNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDS   94 (234)
T ss_dssp             CEEEEEEEEET-TEEEECGGGCC-------SSCEEEESCCCSSSCCTTCEEECEEEEEECTTCCTTCTTSSCCEEEEESS
T ss_pred             CeEEeEEEeeC-CEEEEchhhCC-------CCceEEecccccccccCCcceeeceEEEECCCccCCCCCcccEEEEeeCC
Confidence            35799999997 69999999997       3223322222111    111122233332222       35999999985


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      +-   ....++.|.. .....|+.+++.|+..
T Consensus        95 ~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~  125 (234)
T 3s69_A           95 RVSNSEHIVPLSLPS-SPPSVGSVCHIMGWGS  125 (234)
T ss_dssp             CCCCBTTBCCCCCCS-SCCCTTCEEEEEESSC
T ss_pred             cCCCCCcceeeecCC-CCCCCCCEEEEEECCC
Confidence            42   2356777744 4567799999999865

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=97.69  E-value=0.0003  Score=57.57  Aligned_cols=90  Identities=12%  Similarity=0.059  Sum_probs=57.5

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeEEEEEEcC-------CCcEEEEEEccCCC
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREGKMVGCDP-------AYDLAVLKVDVEGF  190 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A~vv~~d~-------~~DlAvLki~~~~~  190 (229)
                      ..+|.+|++ .+|||++|.+.+..    ....+.|.+-..+   .....+..+-+...+       ..||||||++.+ .
T Consensus        21 ~CgGtLI~~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~-v   94 (224)
T 3beu_A           21 GCGGALYAQ-DIVLTAAHCVSGSG----NNTSITATGGVVDLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQP-I   94 (224)
T ss_dssp             TEEEEEEET-TEEEECGGGSCSSE----EBCCCEEEESCSBTTCTTCEEEEEEEEEECTTCCCGGGSCCCEEEEESSC-C
T ss_pred             ceeEEEeeC-CEEEEChhhcCCCC----CcceEEEEeeEeecCCCCceEEEEEEEEeCCCcCCCcCCCCEEEEEeCCC-C
Confidence            599999997 69999999998421    1234556553211   111133333333333       359999999854 4


Q ss_pred             CccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          191 ELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       191 ~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .++++.+.... ...++.+++.|+...
T Consensus        95 ~~~~i~l~~~~-~~~~~~~~v~GwG~~  120 (224)
T 3beu_A           95 NQPTLKIATTT-AYNQGTFTVAGWGAN  120 (224)
T ss_dssp             CSCCCEECCSS-TTSSSEEEEEESSCS
T ss_pred             CCCcccccccc-ccCCCEEEEEecCcc
Confidence            67888886543 445679999998643

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=97.69  E-value=0.00079  Score=55.97  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+-..+     .....+..+-+...+       ..|||||+++
T Consensus        29 ~~~CgGtLI~~-~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~  103 (252)
T 1rtf_B           29 RFLCGGILISS-CWILSAAHCFQERF----PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLK  103 (252)
T ss_dssp             EEEEEEEECSS-SEEEECGGGGTTCC----CGGGEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEEC
T ss_pred             CEEEEEEEEeC-CEEEECHHHCCCCC----CcccEEEEeCcccccCCCCcceEEEEEEEEeCCCCCcCCCCCCEEEEEEC
Confidence            45799999997 69999999998421    2356777763211     111133333333332       4699999998


Q ss_pred             cC-------CCCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          187 VE-------GFELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~-------~~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      .+       .....++.|...+ .+..|+.+++.|+...
T Consensus       104 ~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  142 (252)
T 1rtf_B          104 SDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKH  142 (252)
T ss_dssp             CSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCS
T ss_pred             CccccccccCCceeceeCCCccccCCCCCEEEEEEcCCC
Confidence            54       1235677775433 4678999999998643

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=97.68  E-value=0.00035  Score=57.56  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=59.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ .+|||++|.+.       +...+.|.+-..+     .....+..+-+...+       ..||||||++
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~-------~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALl~L~   94 (226)
T 1azz_A           23 MYFCGGSLISP-EWILTAAHCMD-------GAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLP   94 (226)
T ss_dssp             TEEEEEEEEET-TEEEECHHHHT-------TCSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCBTTTTBSCCEEEECS
T ss_pred             cEEEEEEEecC-CEEEEhHHhcC-------CCCceEEEEcceEcCCCCCccEEEEEEEEEECCCCCCCCCCCceEEEEEC
Confidence            35799999997 69999999998       5556777763211     011122322222222       4699999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.|...+ ...|+.+++.|+...
T Consensus        95 ~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~  127 (226)
T 1azz_A           95 VPVTLTAAIATVGLPSTD-VGVGTVVTPTGWGLP  127 (226)
T ss_dssp             SCCCCCSSSCCCBCCSSC-CCTTCEEEEEESSCS
T ss_pred             CccccCCCcccccCCCCC-CCCCCEEEEEeCCcc
Confidence            542   235677775444 488999999998653

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=97.67  E-value=0.00095  Score=55.15  Aligned_cols=96  Identities=17%  Similarity=0.054  Sum_probs=60.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccC---------CCCcceEEEEEecCC-----CCeeEEeEEEEEEcCC-------C
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATD---------TSGLHRCKVSLFDAK-----GNGFYREGKMVGCDPA-------Y  178 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~---------~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~~-------~  178 (229)
                      ...+|.+|++ -+|||++|.+.+....         ......+.|.+...+     .....+..+-+...+.       .
T Consensus        25 ~~CgGtLIs~-~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~  103 (251)
T 3gov_B           25 PFCGGSLLGS-SWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFEN  103 (251)
T ss_dssp             EEEEEEEETT-TEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCSSCEEECEEEEEECTTCBTTTTBT
T ss_pred             eeEEEEEecC-CEEEECHhhccccccccccccccccccccccEEEEecceeccCCCCcceEeeeEEEEECCCCCCCCCCC
Confidence            4699999997 6999999999742100         013456777764210     1111333444444443       6


Q ss_pred             cEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          179 DLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       179 DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      |||||+++.+-   ....|+.|.. .....|+.+++.|+...
T Consensus       104 DIAll~L~~~~~~~~~v~picLp~-~~~~~~~~~~v~GwG~~  144 (251)
T 3gov_B          104 DVALVELLESPVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQ  144 (251)
T ss_dssp             CCEEEEESSCCCCSSSCCCCBCCS-SCCCTTCEEEEEECSCC
T ss_pred             CEEEEEeCCcccCCCceEEeECCC-CCCCCCCEEEEEcCCCC
Confidence            99999997542   2356777754 34589999999998643

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=97.67  E-value=0.00033  Score=57.34  Aligned_cols=91  Identities=12%  Similarity=0.019  Sum_probs=59.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeE-EEEE--Ec---CCCcEEEEEEccCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREG-KMVG--CD---PAYDLAVLKVDVEG  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A-~vv~--~d---~~~DlAvLki~~~~  189 (229)
                      ....+|.+|++ -+|||++|.+.+.     ....+.|.+...+   +.. .+.. +++.  ++   ...|||||+++.+-
T Consensus        23 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~-~~~v~~i~~h~y~~~~~~~DiAll~L~~~v   95 (235)
T 3h7t_A           23 KPFCGGSILTA-NFVITAAQCVDGT-----KPSDISIHYGSSYRTTKGT-SVMAKKIYIVRYHPLTMQNNYAVIETEMPI   95 (235)
T ss_dssp             SCCEEEEESSS-SEEEECHHHHTTC-----CGGGEEEEESCSBSSSSSE-EEEEEEEEECSCBTTTTBTCCEEEEESSCC
T ss_pred             CceEeEEEeeC-CEEEECHHHCCCC-----CCCeeEEEcCccccccCCc-eeeeeeEEeeecCCCCCCCCeEEEEecccc
Confidence            34699999997 6999999999732     4566777764321   111 2222 2222  12   24699999998542


Q ss_pred             C----CccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          190 F----ELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ~----~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      .    ...++.|.... .+..|+.+++.|+..
T Consensus        96 ~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~  127 (235)
T 3h7t_A           96 KLDDKTTKKIELPSLLYDPEPDTSVLVSGWGS  127 (235)
T ss_dssp             CCCSSSCCCCBCCCTTCCCCTTCEEEEEECCC
T ss_pred             ccCCccccceecCccccCCCCCCeEEEEecCC
Confidence            1    45667775433 278999999999864

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=97.66  E-value=0.0011  Score=54.49  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC--CCCeeEEeEEEEEEcC-------CCcEEEEEEccCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA--KGNGFYREGKMVGCDP-------AYDLAVLKVDVEG  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~--~g~~~~~~A~vv~~d~-------~~DlAvLki~~~~  189 (229)
                      ....+|.+|++ -+|||++|.+.+..    +...+.|.+-..  .... .+..+-+...+       ..||||||++.+-
T Consensus        23 ~~~CgGtLIs~-~~VLTAAhC~~~~~----~~~~~~v~~G~~~~~~~~-~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~   96 (232)
T 2oq5_A           23 SHRCGATLINA-TWLVSAAHCFTTYK----NPARWTASFGVTIKPSKM-KRGLRRIIVHEKYKHPSHDYDISLAELSSPV   96 (232)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGSSCC----CGGGEEEEESSBSTTCSE-EEEEEEEEECTTCCTTCCTTCCEEEEESSCC
T ss_pred             CeeEEEEEEcC-CEEEECHHHcCCCC----CCceEEEEEeeEECCCce-EEeEEEEEeCCCCCCCCCCCCEEEEEecCCC
Confidence            35799999997 69999999998422    234566666321  1111 23333333332       4699999998542


Q ss_pred             ---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          190 ---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                         ....|+.|.... .+..|+.+++.|+..
T Consensus        97 ~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  127 (232)
T 2oq5_A           97 PYTNAVHRVCLPDASYEFQPGDVMFVTGFGA  127 (232)
T ss_dssp             CCCSSSCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred             ccCCceeEeECCCccccCCCCCEEEEEECCc
Confidence               235667775433 467899999999864

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=97.66  E-value=0.00078  Score=55.30  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEEcC-------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.       +  .+.|.+...       .+.. .+..+-+...+       ..||||||
T Consensus        23 ~~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~g~~~~~~~~~~~~~-~~~v~~~~~Hp~y~~~~~~~DIALl~   91 (223)
T 2bdg_A           23 ELFCSGVLVHP-QWVLSAAHCFQ-------N--SYTIGLGLHSLEADQEPGSQ-MVEASLSVRHPEYNRPLLANDLMLIK   91 (223)
T ss_dssp             CEEEEEEEEET-TEEEECGGGCC-------S--SEEEEESCSBSCGGGCTTCE-EEEEEEEEECTTTTSSTTCSCCEEEE
T ss_pred             CEEEEEEEecC-CEEEEhHHhCC-------C--CeEEEEeeeecCCCCCCCcE-EEEEEEEEeCCCCCCCCCcCcEEEEE
Confidence            35799999997 69999999998       3  234444321       1111 33333333333       46999999


Q ss_pred             EccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....|+.|.+ ..+..|+.+++.|+...
T Consensus        92 L~~~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~~  126 (223)
T 2bdg_A           92 LDESVSESDTIRSISIAS-QCPTAGNSCLVSGWGLL  126 (223)
T ss_dssp             ESSCCCCCSSCCCCCBCS-SCCCTTCEEEEEESCCC
T ss_pred             ECCcccCCCceecccCCC-CCCCCCCEEEEEeCccc
Confidence            98542   2366777754 45789999999998653

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=97.66  E-value=0.0011  Score=54.44  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..+     .....+..+-+...+       ..||||||++.
T Consensus        27 ~~CgGtLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   96 (227)
T 1iau_A           27 KRCGGFLIRD-DFVLTAAHCWG-------S--SINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLER   96 (227)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------S--EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             eEEEEEEEcC-CEEEECHHhCC-------C--ceEEEEccccccCCCCccEEEEEEEEECCCCCCCCCCCCCeEEEEECC
Confidence            5799999997 69999999998       3  3555553211     111123333333332       45999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      +-   ....|+.|.... .+..|+.+++.|+..
T Consensus        97 ~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~  129 (227)
T 1iau_A           97 KAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQ  129 (227)
T ss_dssp             CCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSC
T ss_pred             cccCCCceecccCCCCCCCCCCCCEEEEEEccc
Confidence            42   235677775443 367899999999864

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=97.65  E-value=0.00054  Score=56.95  Aligned_cols=93  Identities=13%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE--------cCCCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC--------DPAYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~--------d~~~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.+..    ..+.+.|.+-..+     .....+..+-+..        ....||||||+
T Consensus        22 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiALl~L   96 (248)
T 2r0l_A           22 DSFCAGSLVHT-CWVVSAAHCFSHSP----PRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRL   96 (248)
T ss_dssp             TEEEEEEEEET-TEEEECGGGGTTCC----CGGGEEEEESCCBTTCCCSSCEEECEEEEEECTTCCTTSTTTTCCEEEEE
T ss_pred             CceEEEEEEcC-CEEEECHHHcCCCC----CcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCCccCcCCCCCCCEEEEEe
Confidence            35799999997 69999999998421    2356777764221     0011233333322        22469999999


Q ss_pred             ccC-------CCCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          186 DVE-------GFELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~-------~~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      +.+       .....|+.|... ..+..|+.+++.|+..
T Consensus        97 ~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  135 (248)
T 2r0l_A           97 KKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGH  135 (248)
T ss_dssp             CCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred             CCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccc
Confidence            854       123567777543 3567899999999864

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=97.65  E-value=0.00059  Score=56.40  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC------------------
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP------------------  176 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~------------------  176 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..+     .....+..+-+...+                  
T Consensus        24 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~   93 (237)
T 1gvz_A           24 FQCGGVLVHP-QWVLTAAHCMS-------D--DYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDI   93 (237)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------S--SCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGGCSSCCTTSCC
T ss_pred             eEEEeEEeeC-CEEEEcHHhCC-------C--CCeEEEeecccccCCCCceEEEeeeEecCCccCccccccccccccccc
Confidence            4699999997 69999999996       2  2344442210     111133333333333                  


Q ss_pred             CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          177 AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       177 ~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ..|||||+++.+-   ....++.|.. .....|+.+++.|+...
T Consensus        94 ~~DIALl~L~~~~~~~~~v~picLp~-~~~~~~~~~~v~GwG~~  136 (237)
T 1gvz_A           94 SHDLMLLRLAQPARITDAVKILDLPT-QEPKLGSTCYTSGWGLI  136 (237)
T ss_dssp             TTCCEEEEESSCCCCBTTBCCCCCCS-SCCCTTCEEEEEEEECS
T ss_pred             CCceEEEEeCCCcccCCcEeeeECCC-CCCCCCCEEEEECCCcc
Confidence            6799999998542   2356777754 35788999999998653

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=97.65  E-value=0.00095  Score=54.89  Aligned_cols=87  Identities=17%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEEc-------CCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGCD-------PAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d-------~~~DlAvLk  184 (229)
                      ....+|.+|++ .+|||++|.+.       +  .+.|.+-..       .+.. .+..+-+...       ...||||||
T Consensus        24 ~~~CgGtLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~-~~~v~~~~~Hp~y~~~~~~~DIALl~   92 (227)
T 2psx_A           24 QLYCGAVLVHP-QWLLTAAHCRK-------K--VFRVRLGHYSLSPVYESGQQ-MFQGVKSIPHPGYSHPGHSNDLMLIK   92 (227)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------S--SCEEEESCCBSSCCCCTTCE-EEEEEEEEECTTCCSSSCTTCCEEEE
T ss_pred             CceEEEEEEcC-CEEEEhHHcCC-------C--CcEEEEeeeecccCCCCCcE-EEEEEEEEeCCCCCCCCCCCCEEEEE
Confidence            35799999997 69999999998       2  234444221       1221 2333323222       246999999


Q ss_pred             EccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....|+.|. ...+..|+.+++.|+...
T Consensus        93 L~~~~~~~~~v~pi~l~-~~~~~~~~~~~v~GwG~~  127 (227)
T 2psx_A           93 LNRRIRPTKDVRPINVS-SHCPSAGTKCLVSGWGTT  127 (227)
T ss_dssp             ESSCCCCCSSSCCCCBC-SSCCCTTCEEEEEESSCS
T ss_pred             eCCCCCCCCceeeeECC-CCCCCCCCEEEEEeCccc
Confidence            98542   246677785 456789999999998653

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=97.64  E-value=0.00092  Score=55.72  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=59.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+...+     .....+..+-+...+       ..||||||++
T Consensus        23 ~~~CgGtLI~~-~~VLTAAhC~~~~~----~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~   97 (261)
T 3gyl_B           23 VHVCGGSLVSE-QWVLSAAHCFPSEH----HKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLS   97 (261)
T ss_dssp             EEEEEEEECSS-SEEEECGGGSCTTS----CGGGEEEEESCSBTTSCCSSCEEECEEEEEECTTCCSTTCSCCCEEEEES
T ss_pred             ceEEEEEEEcC-CEEEECHHHCCCCC----CcccEEEEeCceeccCCCCCceEEEEEEEEECCCcCCCCCCCcEEEEEEC
Confidence            35799999997 69999999996321    3455667664211     111123333333333       3599999998


Q ss_pred             cCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ..+.++.|... ..+..|+.+++.|+..
T Consensus        98 ~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  131 (261)
T 3gyl_B           98 RPITFSRYIRPISLPAAQASFPNGLHCTVTGWGH  131 (261)
T ss_dssp             SCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSC
T ss_pred             CCccCCCceeccCCCCcccCCCCCCEEEEEecCC
Confidence            542   23566666433 3467899999999864

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=97.63  E-value=0.0014  Score=54.24  Aligned_cols=92  Identities=11%  Similarity=0.039  Sum_probs=58.8

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC-------CCcEEEEEEccC
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP-------AYDLAVLKVDVE  188 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~-------~~DlAvLki~~~  188 (229)
                      ..+|.+|++ -+|||++|.+.+...  .+...+.|.+-..     ++....+..+-+...+       ..||||||++.+
T Consensus        29 ~CgGtLIs~-~~VLTAAHC~~~~~~--~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~  105 (237)
T 2f91_A           29 FCGASIYNE-NYAITAGHCVYGDDY--ENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGS  105 (237)
T ss_dssp             EEEEEEEET-TEEEECGGGTTTSCT--TSCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSC
T ss_pred             eEEEEEeeC-CEEEEcHHhCCCCcc--CCcccEEEEECCeeccCCCCccEEEEEEEEEECCCCCCCCCCCcEEEEEECCC
Confidence            389999997 699999999974211  0234567766321     1211233333333333       469999999854


Q ss_pred             C---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          189 G---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      -   ....|+.|.+. ....|+.+++.|+..
T Consensus       106 v~~~~~v~picLp~~-~~~~~~~~~v~GwG~  135 (237)
T 2f91_A          106 LTFNDNVAPIALPEQ-GHTATGDVIVTGWGT  135 (237)
T ss_dssp             CCCBTTBCCCBCCCT-TCCCCSEEEEEESCC
T ss_pred             cccCCceeeccCCCC-CCCCCCcEEEEECCc
Confidence            2   23677777543 447899999999764

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=97.62  E-value=0.00079  Score=55.96  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--CCeeEEeEEEEEE----c----CCCcEEEEEEccCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--GNGFYREGKMVGC----D----PAYDLAVLKVDVEG  189 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g~~~~~~A~vv~~----d----~~~DlAvLki~~~~  189 (229)
                      ...+|.+|++ -+|||++|.+.+      ....+.|.+-..+  .....+..+-+..    +    ...||||||++.+-
T Consensus        24 ~~CgGtLIs~-~~VLTAAHC~~~------~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v   96 (240)
T 2zgc_A           24 HLCGGVLVHP-KWVLTAAHCLAQ------RMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKV   96 (240)
T ss_dssp             EEEEEEEEET-TEEEECGGGGCS------CGGGEEEEESCSBSSSCCEEEEEEEEEECTTCBCTTSCBSCCEEEEESSCC
T ss_pred             eEEEEEEEcC-CEEEEcHHhcCC------CCCCEEEEecccccCCCCeEEEEEEEEECCCCCCCCCCcccEEEEEeCCcc
Confidence            5799999997 699999999984      2225666663211  1111233333322    2    34699999998542


Q ss_pred             ---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          190 ---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 ---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                         ....|+.|.... .+..|+.+++.|+...
T Consensus        97 ~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  128 (240)
T 2zgc_A           97 KPSRTIRPLALPSKRQVVAAGTRCSMAGWGLT  128 (240)
T ss_dssp             CCCSSCCCCCCCCTTCCCCTTCEEEEEECCBS
T ss_pred             cCCCceeeeEcCCCCCCCCCCCEEEEEECCcc
Confidence               235677775543 3678999999998643

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=97.61  E-value=0.00036  Score=57.08  Aligned_cols=91  Identities=16%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC----CeeEEeEEEEEE---c---CCCcEEEEEEccCCC
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG----NGFYREGKMVGC---D---PAYDLAVLKVDVEGF  190 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g----~~~~~~A~vv~~---d---~~~DlAvLki~~~~~  190 (229)
                      ..+|.+|++ .+|||++|.+.+.     ....+.|.+...+-    ....+..+-+..   +   ...|||||+++.+-.
T Consensus        27 ~CgGtLI~~-~~VLTAAHC~~~~-----~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~y~~~~~~~DIALl~L~~~v~  100 (228)
T 3h7o_A           27 TCGGAILSQ-WFVLTAAHCVFDQ-----KPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLK  100 (228)
T ss_dssp             EEEEEESSS-SEEEECHHHHTTS-----CGGGCEEEESCSBTTTBCCEEECCEEEEEESSCBTTTTBTCCEEEEESSCCC
T ss_pred             EeeeEEeeC-CEEEEcHHhcccC-----CCCcEEEEecccccccCCCceeeeEEEEEccccCCCCccCCEEEEEECCccc
Confidence            699999997 6999999999632     34556666532210    001122222222   1   246999999985421


Q ss_pred             ----CccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          191 ----ELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       191 ----~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                          ...|+.|.... .+..|+.+++.|+...
T Consensus       101 ~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~  132 (228)
T 3h7o_A          101 LDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDG  132 (228)
T ss_dssp             CCSSSSCCCBCCCTTCCCCTTCEEEEEECCCS
T ss_pred             ccccccccccCCccccCCCCCCeeEEEEEecC
Confidence                45677775543 2789999999998654

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=97.60  E-value=0.00069  Score=55.63  Aligned_cols=87  Identities=20%  Similarity=0.254  Sum_probs=57.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..+     .....+..+-+...+       ..||||||++.
T Consensus        27 ~~CgGsLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   96 (224)
T 1cgh_A           27 SRCGGFLVRE-DFVLTAAHCWG-------S--NINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSR   96 (224)
T ss_dssp             CEEEEEEEET-TEEEECGGGCC-------S--SEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBSCCEEEEESS
T ss_pred             eEEEEEEeeC-CEEEEhHHhCC-------C--CCEEEEeecccCCCCCccEEEEEEEEEcCCCCCCCCCcCCEEEEEECC
Confidence            5799999997 69999999998       3  3555553211     111133444343333       35999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      +-   ....|+.|.... .+..|+.+++.|+..
T Consensus        97 ~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  129 (224)
T 1cgh_A           97 RVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGR  129 (224)
T ss_dssp             CCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred             CCcCCCceEeeECCCCCCCCCCCCEEEEEECCc
Confidence            42   235677775443 467899999999864

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=97.59  E-value=0.0014  Score=54.01  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccC-CCCcceEEEEEecCCC------CeeEEeEEEEEEcC-------CCcEEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATD-TSGLHRCKVSLFDAKG------NGFYREGKMVGCDP-------AYDLAVLKV  185 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~-~~~~~~~~V~~~~~~g------~~~~~~A~vv~~d~-------~~DlAvLki  185 (229)
                      ...+|.+|++ -+|||++|.+.+.... ......+.|.+-..+.      ....+..+-+...+       ..||||||+
T Consensus        25 ~~CgGtLI~~-~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L  103 (241)
T 3ncl_A           25 HICGASLISP-NWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLEL  103 (241)
T ss_dssp             EEEEEEECSS-SEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEEEEEEECTTCCTTTCTTCCEEEEE
T ss_pred             eEEEEEEeeC-CEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEEEEEEECCCCCCCCCCCcEEEEEE
Confidence            4699999997 6999999999743210 0123556666532110      11133444444444       469999999


Q ss_pred             ccCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      +.+-   ....|+.|... ..+..|+.+++.|+..
T Consensus       104 ~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~  138 (241)
T 3ncl_A          104 EKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGH  138 (241)
T ss_dssp             SSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSB
T ss_pred             CCCCcccCccCceEcCCcccCCCCCCEEEEEEecc
Confidence            8542   23566767543 3466899999999854

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=97.59  E-value=0.00053  Score=56.40  Aligned_cols=89  Identities=18%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeEEEEEEcC-------CCcEEEEEEccC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREGKMVGCDP-------AYDLAVLKVDVE  188 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A~vv~~d~-------~~DlAvLki~~~  188 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+   +. ..+..+-+...+       ..||||||++ +
T Consensus        27 ~~~CgGtLIs~-~~VLTAAHC~~-------~~~~~~v~~G~~~~~~~~-~~~~v~~i~~hp~y~~~~~~~DiALl~L~-~   96 (230)
T 2hlc_A           27 RVWCGGSLIDN-KWILTAAHCVH-------DAVSVVVYLGSAVQYEGE-AVVNSERIISHSMFNPDTYLNDVALIKIP-H   96 (230)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHT-------TEEEEEEEESCSBTTCCS-EEEECSEEEECTTCBTTTTBTCCEEEECS-C
T ss_pred             CEEEEEEEeeC-CEEEECHHHCC-------CCcceEEEEeeeecCCCC-eEEEEEEEEECCCCCCCCccccEEEEEec-C
Confidence            45799999997 69999999998       5566777764221   11 122322232322       4699999997 4


Q ss_pred             C---CCccceEcCCCC---CCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSH---DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~---~~~~G~~V~aiG~P~G  217 (229)
                      -   ....|+.|....   ....|+.+++.|+...
T Consensus        97 ~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~  131 (230)
T 2hlc_A           97 VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQS  131 (230)
T ss_dssp             CCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCC
T ss_pred             CCcCCcEeeeEcCCccccccccCCcEEEEEeeeec
Confidence            2   246677775543   2568999999998653

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=97.57  E-value=0.0011  Score=54.51  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC----------CCcEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP----------AYDLAVL  183 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~----------~~DlAvL  183 (229)
                      ....+|.+|++ -+|||++|.+.       .  .+.|.+-..+     .....+..+-+...+          ..|||||
T Consensus        23 ~~~CgGsLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl   92 (225)
T 1npm_A           23 RLICGGVLVGD-RWVLTAAHCKK-------Q--KYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLI   92 (225)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------S--SCEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEE
T ss_pred             ceEEEEEEECC-CEEEEhHHcCC-------C--CceEEEeeeEcCCCCCCcEEEEEEEEEECCCCCCCCccCccccEEEE
Confidence            35799999997 69999999997       2  2345542210     001123333232222          3599999


Q ss_pred             EEccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          184 KVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       184 ki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      |++.+-   ....|+.|.+ .....|+.+++.|+..
T Consensus        93 ~L~~~~~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~  127 (225)
T 1npm_A           93 RLQNSANLGDKVKPVQLAN-LCPKVGQKCIISGWGT  127 (225)
T ss_dssp             EESSCCCCSSSSCCCEECS-SCCCTTCEEEEEESSC
T ss_pred             eeCCcccCCCceeceECCC-CCCCCCCEEEEEeCCc
Confidence            998542   2367888864 3578999999999864

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=97.57  E-value=4.2e-05  Score=62.52  Aligned_cols=89  Identities=18%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceE----EEEEecCC----CCeeEEeEEEEEE--------cCCCcEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRC----KVSLFDAK----GNGFYREGKMVGC--------DPAYDLAV  182 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~----~V~~~~~~----g~~~~~~A~vv~~--------d~~~DlAv  182 (229)
                      ....+|++|++ .+|||++|++.+.     ....+    .|.+-..+    +.  .+..+-+..        +...||||
T Consensus        29 ~~~CgGtLIs~-~~VLTAAHCv~~~-----~~~~~~~~~~v~~G~~~~~~~~~--~~~v~~i~~hp~y~~~~~~~~DiAl  100 (215)
T 1p3c_A           29 GSSCTGTLIAP-NKILTNGHCVYNT-----ASRSYSAKGSVYPGMNDSTAVNG--SANMTEFYVPSGYINTGASQYDFAV  100 (215)
T ss_dssp             SCEEEEEEEET-TEEEECHHHHEET-----TTTEECCCCEEEETCBTTBCTTC--CEEEEEEECCHHHHHHCCGGGCCEE
T ss_pred             CceEEEEEEeC-CEEEECccEeccC-----CCCccccceEEEEcccCCCCCCC--eEEEEEEEeCCccccCCCcccCEEE
Confidence            35799999997 6999999999742     22333    55553211    11  223333322        23569999


Q ss_pred             EEEccCC-CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          183 LKVDVEG-FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       183 Lki~~~~-~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      ||++.+- ....++.|... ....|+.++++|++.
T Consensus       101 l~L~~~~~~~v~pi~l~~~-~~~~g~~~~~~Gwg~  134 (215)
T 1p3c_A          101 IKTDTNIGNTVGYRSIRQV-TNLTGTTIKISGYPG  134 (215)
T ss_dssp             EEESSCHHHHHCCCCBCCC-SCCTTCEEEEEECCH
T ss_pred             EEECCCCcccceeeecCCC-cccCCCeEEEecCCC
Confidence            9998531 12567777544 458899999999973

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=97.57  E-value=0.00054  Score=56.33  Aligned_cols=87  Identities=15%  Similarity=0.118  Sum_probs=54.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEc-------CCCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCD-------PAYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d-------~~~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.       ..  ..|.+...+      .....+..+.+...       ...|||||++
T Consensus        25 ~~~CgGtLI~~-~~VLTAAHC~~-------~~--~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~DIALl~L   94 (238)
T 4e7n_A           25 TLFCGGTLINQ-EWVLTAAHCDR-------KN--FRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRL   94 (238)
T ss_dssp             CEEEEEEECSS-SEEEECGGGCC-------SS--CEEEESCSCSSSCCTTCEEECEEEEECSSTTCCCCSSSCCCEEEEE
T ss_pred             CEEEEEEEecC-CEEEEhHHcCC-------CC--CeEEeceeeccccCCCceeEeeeeeEEcCCCCCCCCCCCcEEEEEe
Confidence            35799999997 69999999998       32  334432211      11111222222212       2459999999


Q ss_pred             ccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      +.+-   ..+.++.|.. .....|+.+++.|+..
T Consensus        95 ~~~v~~~~~v~pi~l~~-~~~~~~~~~~v~GwG~  127 (238)
T 4e7n_A           95 DSPVKNSKHIAPFSLPS-SPPSVGSVCRIMGWGR  127 (238)
T ss_dssp             SSCCCCBTTBCCCCCCS-SCCCTTCEEEEEESSC
T ss_pred             CCCccCCCceeeeeCCC-CCCCCCCEEEEEECCC
Confidence            8542   2356777744 4567799999999864

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=97.57  E-value=0.0012  Score=54.93  Aligned_cols=93  Identities=18%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE-cCCCcEEEEEEccCC---C
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC-DPAYDLAVLKVDVEG---F  190 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~-d~~~DlAvLki~~~~---~  190 (229)
                      ...+|.+|++ -+|||++|.+.+..    ....+.|.+-..+     .....+..+-+.. ....||||||++.+-   .
T Consensus        42 ~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~~~DIALl~L~~~v~~~~  116 (247)
T 1ddj_A           42 HFCGGTLISP-EWVLTAAHCLEKSP----RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITD  116 (247)
T ss_dssp             EEEEEEEEET-TEEEECGGGGTTCS----CGGGCEEEESCSBSSSCCTTCEEEEEEEEEECTTSCSCEEEEESSCCCCCS
T ss_pred             eEEEEEEeeC-CEEEEcHHHcCCCC----CCccEEEEEcccccCccCCceEEEEeeeEEcCCCCCcEEEEEeCCceeeCC
Confidence            4699999997 69999999998421    2345666653211     1111222222233 346799999998542   2


Q ss_pred             CccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          191 ELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       191 ~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      .+.|+.|...+ .+..|+.+++.|+...
T Consensus       117 ~v~picLp~~~~~~~~~~~~~v~GwG~~  144 (247)
T 1ddj_A          117 KVIPACLPSPNYVVADRTECFITGWGET  144 (247)
T ss_dssp             SCCCCBCCCTTCCCCTTCEEEEEECCCC
T ss_pred             CEEeeecCCcccCCCCCCEEEEEEcccC
Confidence            35666665433 4678999999998643

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=97.57  E-value=0.00063  Score=56.78  Aligned_cols=91  Identities=19%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+     .....+..+-+...+       ..||||||++
T Consensus        24 ~~~CgGsLI~~-~~VLTAAHC~~-------~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~   95 (250)
T 1aut_C           24 KLACGAVLIHP-SWVLTAAHCMD-------ESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLA   95 (250)
T ss_dssp             CEEEEEEEEET-TEEEECGGGSS-------SCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEES
T ss_pred             ceEEEEEEeeC-CEEEEChHHcC-------CCCceEEEEcccccCCCCCccEEEEEEEEEECCCCCCCCCCCcEEEEEEC
Confidence            35799999997 69999999998       4455666663211     111133333333333       3699999998


Q ss_pred             cCC---CCccceEcCCCC-----CCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSH-----DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-----~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....|+.|....     ....|+.+++.|+...
T Consensus        96 ~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~  134 (250)
T 1aut_C           96 QPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYH  134 (250)
T ss_dssp             SCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCC
T ss_pred             CcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCC
Confidence            542   124566664321     2468999999998643

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=97.55  E-value=0.00081  Score=57.23  Aligned_cols=93  Identities=13%  Similarity=0.076  Sum_probs=59.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEc--------CCCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCD--------PAYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d--------~~~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.+..    ..+.+.|.+-..+     .....+..+-+...        ...|||||++
T Consensus        57 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L  131 (283)
T 1yc0_A           57 DSFCAGSLVHT-CWVVSAAHCFSHSP----PRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRL  131 (283)
T ss_dssp             TEEEEEEEEET-TEEEECGGGGTTCC----CGGGEEEEESCCBTTCCCSSCEEECEEEEEECTTCCTTSTTTTCCEEEEE
T ss_pred             CcEEEEEEeeC-CEEEECHHHcCCCC----CCceEEEEEeeeecccCCCceEEEeeEEEEecCccccCCCCCCceEEEEe
Confidence            35799999997 69999999998421    2356777764211     11112333333222        2469999999


Q ss_pred             ccC-------CCCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          186 DVE-------GFELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~-------~~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      +.+       ...+.++.|... ..+..|+.+++.|+..
T Consensus       132 ~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~  170 (283)
T 1yc0_A          132 KKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGH  170 (283)
T ss_dssp             CCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSC
T ss_pred             CCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCc
Confidence            754       123567777543 3567899999999864

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=97.55  E-value=0.00071  Score=55.57  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ...+|.+|++ -+|||++|.+.       .  .+.|.+...+      .....+..+.+...+       ..|||||+++
T Consensus        26 ~~CgGtLI~~-~~VLTAAHC~~-------~--~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~DIALl~L~   95 (234)
T 3s9c_A           26 IHCAGALINR-EWVLTAAHCDR-------R--NIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLR   95 (234)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------T--TEEEEESCSSSSSCCTTCEEECEEEEECCSSCSSTTCGGGCCEEEEES
T ss_pred             EEEeeEEeeC-CEEEEchhhcC-------C--CceEEEeecccccccCCcceEEeeeEEEeCCCCCCCCCcCceEEEEEC
Confidence            4699999997 59999999997       3  2444443211      111111222222122       3499999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.|.. .....|+.+++.|+..
T Consensus        96 ~~v~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~  127 (234)
T 3s9c_A           96 RPVTYSTHIAPVSLPS-RSRGVGSRCRIMGWGK  127 (234)
T ss_dssp             SCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSC
T ss_pred             CccccCCcccccccCC-CCCCCCCeEEEEeeCC
Confidence            542   2466777754 4567799999999864

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=97.55  E-value=0.00053  Score=56.38  Aligned_cols=86  Identities=17%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC---CCCeeEEeEEEEEEcC-------CCcEEEEEEccCC-
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA---KGNGFYREGKMVGCDP-------AYDLAVLKVDVEG-  189 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~---~g~~~~~~A~vv~~d~-------~~DlAvLki~~~~-  189 (229)
                      ..+|.+|++ -+|||++|.+.       +  .+.|.+-..   +.....+..+-+...+       ..|||||+++.+- 
T Consensus        25 ~CgGtLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~   94 (224)
T 2qxi_A           25 HCGGVLVNE-RWVLTAAHCKM-------N--EYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQAR   94 (224)
T ss_dssp             EEEEEEEET-TEEEECGGGCC-------S--CEEEEESCSBTTCTTSEEEEECEEEECTTCCTTTCTTCCEEEECSSCCC
T ss_pred             EEEEEEecC-CEEEEhHHcCC-------C--CcEEEEeeeecCCCccEEEEEEEEEECCCCCCCCCcCcEEEEEeCCCCc
Confidence            699999997 69999999995       2  345555321   1111133333333332       3699999998542 


Q ss_pred             --CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          190 --FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 --~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                        ....|+.|... ....|+.+++.|+...
T Consensus        95 ~~~~v~picL~~~-~~~~~~~~~v~GwG~~  123 (224)
T 2qxi_A           95 LSSMVKKVRLPSR-CEPPGTTCTVSGWGTT  123 (224)
T ss_dssp             CBTTBCCCCCCSS-CCCTTCEEEEEESSCS
T ss_pred             CCCceeeEECCCC-CCCCCCEEEEEeCCcc
Confidence              23667777543 4578999999998654

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=97.54  E-value=0.0011  Score=54.36  Aligned_cols=94  Identities=14%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC------CCCeeEEeEEEEEEcCC-------CcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA------KGNGFYREGKMVGCDPA-------YDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~------~g~~~~~~A~vv~~d~~-------~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.+...   ....+.|.+...      +.....+..+-+...++       .|||||++
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~~~~~---~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALl~L   98 (235)
T 4dgj_A           23 RLLCGASLVSS-DWLVSAAHCVYGRNL---EPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHL   98 (235)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHTTSCS---SGGGEEEEESCCBTTCCSCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEE
T ss_pred             CeEEEEEEeeC-CEEEECHHhcCCCCC---CCccEEEEEeeecccccCCCceeEEeEEEEEECCCCCCCCCCCeEEEEEE
Confidence            35799999997 699999999964211   234556665321      11111233333444443       69999999


Q ss_pred             ccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      +.+-   ....|+.|.... .+..|+.+++.|+..
T Consensus        99 ~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  133 (235)
T 4dgj_A           99 EFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGT  133 (235)
T ss_dssp             SSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSB
T ss_pred             CCccccCCcccccCCCCcccCCCCCCEEEEEeccc
Confidence            8542   235677775543 367899999999853

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=97.54  E-value=0.0009  Score=55.27  Aligned_cols=87  Identities=24%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-----------------
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-----------------  176 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-----------------  176 (229)
                      ....+|.+|++ -+|||++|.+.       +  .+.|.+-..+     .....+..+-+...+                 
T Consensus        23 ~~~CgGtLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~   92 (237)
T 1ao5_A           23 EHICGGVLLDR-NWVLTAAHCYV-------D--QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGAD   92 (237)
T ss_dssp             EEEEEEEEEET-TEEEECTTCCC-------S--SCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGGGGGCSSCCTTCC
T ss_pred             CeEEEEEEeeC-CEEEECHHHCC-------C--CCEEEecccccccCCCCcEEEEEEEEEcCCCcCcccccccccccccC
Confidence            35799999997 69999999996       2  2344442211     101122222222222                 


Q ss_pred             -CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          177 -AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       177 -~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                       ..|||||+++.+-   ....|+.|.. ..+..|+.+++.|+..
T Consensus        93 ~~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~  135 (237)
T 1ao5_A           93 FSDDLMLLRLSKPADITDVVKPIALPT-KEPKPGSKCLASGWGS  135 (237)
T ss_dssp             CTTCCEEEEESSCCCCCSSSCCCCCCC-SCCCTTCEEEEEESCC
T ss_pred             CCCCEEEEEeCCccccCCceeCCCcCC-CCCCCCCEEEEEECCc
Confidence             6799999998542   2356777754 4578999999999864

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=97.54  E-value=0.00087  Score=55.01  Aligned_cols=87  Identities=18%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.       .  .+.|.+-..+     +....+..+-+...+       ..||||||++.
T Consensus        23 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   92 (223)
T 3mfj_A           23 HFCGGSLINS-QWVVSAAHCYK-------S--GIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKS   92 (223)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------S--SCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             eEEEEEEecC-CEEEEhHHhcC-------C--CcEEEECCceecccCCCcEEEEeeEEEECCCCCCCCCCCCEEEEEeCC
Confidence            5699999997 69999999995       2  2345443211     111123333333332       46999999985


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ..+.|+.|... ....|+.+++.|+...
T Consensus        93 ~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~  124 (223)
T 3mfj_A           93 AASLNSRVASISLPTS-CASAGTQCLISGWGNT  124 (223)
T ss_dssp             CCCCBTTBCCCBCCSS-CCCTTCEEEEEESSCC
T ss_pred             CcccCCcEeeeECCCC-CCCCCCEEEEEeeecc
Confidence            42   23677778543 4689999999998654

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=97.52  E-value=0.00023  Score=58.98  Aligned_cols=90  Identities=18%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCe-------eEEeEEEEEEcC-------C--CcEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNG-------FYREGKMVGCDP-------A--YDLAV  182 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~-------~~~~A~vv~~d~-------~--~DlAv  182 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+-..       ..+..+-+...+       .  .||||
T Consensus        25 ~~~CgGtLIs~-~~VLTAAhC~~-------~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIAL   96 (240)
T 1fon_A           25 HHTCGGSLIAP-DWVVTAGHCIS-------TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIAL   96 (240)
T ss_dssp             EEEECCEEEET-TEEEECGGGCC-------TTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEE
T ss_pred             eeEEEEEEeeC-CEEEECHHHCC-------CCCceEEEeeeeeccccCCCceeEeeeeeEEEECCCCcCCCccCCCCEEE
Confidence            35799999997 69999999998       4455666653221110       011111111222       2  79999


Q ss_pred             EEEccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          183 LKVDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       183 Lki~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      |+++.+-   ..+.|+.|.... .+..|+.+++.|+..
T Consensus        97 l~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  134 (240)
T 1fon_A           97 VKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGR  134 (240)
T ss_dssp             EECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTT
T ss_pred             EEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeE
Confidence            9998542   235677775543 467899999999864

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=97.51  E-value=0.00088  Score=55.23  Aligned_cols=87  Identities=22%  Similarity=0.192  Sum_probs=55.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEE------------------cC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGC------------------DP  176 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~------------------d~  176 (229)
                      ...+|.+|++ .+|||++|.+.       +  .+.|.+-..     +.....+..+-+..                  ..
T Consensus        22 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~   91 (235)
T 1ton_A           22 YLCGGVLIDP-SWVITAAHCYS-------N--NYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDH   91 (235)
T ss_dssp             SEEEEEEEET-TEEEECGGGCC-------S--CCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCS
T ss_pred             CeEEEEEecC-CEEEEcHHhCC-------C--CcEEEeCcccccCCCCcceEEEEEEEEeCCCCcccccccccccccCCC
Confidence            5799999997 69999999996       2  234444211     01011222222222                  22


Q ss_pred             CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          177 AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       177 ~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ..|||||+++.+-   ....++.|.. ..+..|+.+++.|+...
T Consensus        92 ~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~~  134 (235)
T 1ton_A           92 SNDLMLLHLSEPADITGGVKVIDLPT-KEPKVGSTCLASGWGST  134 (235)
T ss_dssp             TTCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEEESSCS
T ss_pred             cCCEEEEEcCCccccCCcceeeeCCC-CCCCCCCEEEEEecCCC
Confidence            4599999998542   2366777854 45789999999998653

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=97.51  E-value=0.0015  Score=53.50  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       .  .+.|.+-..+     .....+..+-+...+       ..|||||+++
T Consensus        23 ~~~CgGtLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIAll~L~   92 (223)
T 1lo6_A           23 HLLCGGVLIHP-LWVLTAAHCKK-------P--NLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLA   92 (223)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------T--TCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             CEEEEeEEecC-CEEEECccCCC-------C--CeEEEEcceecCCCCCCcEEEEEEEEEECCCCCCCCCcCeEEEEEEC
Confidence            35799999997 69999999997       2  2344442110     111123333332322       4699999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....|+.|... ....|+.+++.|+...
T Consensus        93 ~~~~~~~~v~pi~l~~~-~~~~~~~~~v~GwG~~  125 (223)
T 1lo6_A           93 RPAKLSELIQPLPLERD-CSANTTSCHILGWGKT  125 (223)
T ss_dssp             SCCCCBTTBCCCCBCCC-TTCCCCEEEEEESSCC
T ss_pred             CcccCCCceeecccCCC-CCCCCCEEEEEEECCC
Confidence            542   23667778543 4589999999998643

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.50  E-value=0.00055  Score=58.50  Aligned_cols=90  Identities=12%  Similarity=0.026  Sum_probs=59.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--CCeeEEeEEEEEEcC-------CCcEEEEEEccCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--GNGFYREGKMVGCDP-------AYDLAVLKVDVEG  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g~~~~~~A~vv~~d~-------~~DlAvLki~~~~  189 (229)
                      ....+|.||++ -+|||++|.+.       +...+.|.+-..+  .....+..+-+...+       ..||||||++.+-
T Consensus        76 ~~~CgGtLI~~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~pv  147 (283)
T 3f1s_B           76 KDFCGGVIIRE-NFVLTTAKCSL-------LHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPI  147 (283)
T ss_dssp             CEEEEEEEEET-TEEEECHHHHT-------SCSSCEEEECTTC-CCCCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCC
T ss_pred             CeeeccEEecC-CEEEEcHHhcC-------ccCceEEEEeeeeCCCCcEEEEeEEEEECCCCCCCCCCCCEEEEEeCCcc
Confidence            35699999997 69999999997       4456677764221  111133333333333       4599999998542


Q ss_pred             ---CCccceEcCCCC----CCCCCCeEEEEecCC
Q 027022          190 ---FELKPVVLGTSH----DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ---~~~~~l~lg~s~----~~~~G~~V~aiG~P~  216 (229)
                         ..+.|+-|...+    .+..|+.+++.|+..
T Consensus       148 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  181 (283)
T 3f1s_B          148 QCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR  181 (283)
T ss_dssp             CTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC
T ss_pred             cCCCCEEeEECCCCccccccccCCCEEEEEECCC
Confidence               235677775433    468899999999864

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=97.50  E-value=0.00067  Score=55.76  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=59.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC---CeeEEeEEEEEEcC--------CCcEEEEEEccC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG---NGFYREGKMVGCDP--------AYDLAVLKVDVE  188 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g---~~~~~~A~vv~~d~--------~~DlAvLki~~~  188 (229)
                      ...+|.+|++ .+|||++|.+.+...   +...+.|.+...+-   ....+..+-+...+        ..||||||++.+
T Consensus        22 ~~CgGtLI~~-~~VLTAAhC~~~~~~---~~~~~~v~~g~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~   97 (242)
T 3tvj_B           22 TTAAGALLYD-NWVLTAAHAVYEQKH---DASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK   97 (242)
T ss_dssp             EEEEEEEETT-TEEEECHHHHSTTTT---CSSCCEEEESCSBTTCSCCEEEEEEEEEECTTCCTTSCSTTCCEEEEESSC
T ss_pred             CcEEEEEecC-CEEEECHHHCCCCCC---CcceEEEEeccccccCcccceeeEEEEEeCCCCCCCCCCcCcEEEEEECCc
Confidence            4689999997 699999999964211   34556666643211   10122233333222        469999999854


Q ss_pred             C---CCccceEcCCCC---CCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSH---DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~---~~~~G~~V~aiG~P~G  217 (229)
                      -   ....|+.|....   .+..|+.+.+.|+...
T Consensus        98 v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~  132 (242)
T 3tvj_B           98 VVINSNITPICLPRKEAESFMRTDDIGTASGWGLT  132 (242)
T ss_dssp             CCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCC
T ss_pred             cccCCCEecCCcCCCcccccccCCCEEEEEEeCCC
Confidence            2   246777776544   3789999999998643

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=97.49  E-value=0.00028  Score=60.42  Aligned_cols=80  Identities=11%  Similarity=-0.001  Sum_probs=49.8

Q ss_pred             HhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCC-----cEEEEccccccccccCCCCcceEEEEEe
Q 027022           84 ETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKF-----GHIVTNYHVVAKLATDTSGLHRCKVSLF  158 (229)
Q Consensus        84 ~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~-----G~IlTn~HVv~~~~~~~~~~~~~~V~~~  158 (229)
                      ..+.||++|..                      ......+|+||+++     -||||++|.+.+...   ....+.|.+.
T Consensus        20 ~~~~aV~rl~~----------------------~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~---~~~~~~v~~~   74 (268)
T 1arb_A           20 DIIRAVGAYSK----------------------SGTLACTGSLVNNTANDRKMYFLTAHHCGMGTAS---TAASIVVYWN   74 (268)
T ss_dssp             TGGGGEEEEEE----------------------TTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHH---HHHTCEEEES
T ss_pred             HhhceEEEEEe----------------------CCccEEeEEEEcCCCCCCCCEEEEcHHhCCCccC---cceEEEEEeC
Confidence            45778999863                      12357999999973     599999999973100   1234555552


Q ss_pred             cCC-----------C------C-eeEEeEEEEEEcCCCcEEEEEEccC
Q 027022          159 DAK-----------G------N-GFYREGKMVGCDPAYDLAVLKVDVE  188 (229)
Q Consensus       159 ~~~-----------g------~-~~~~~A~vv~~d~~~DlAvLki~~~  188 (229)
                      ..+           +      . .......++..+...||||||++.+
T Consensus        75 ~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~~~nDIALLrL~~~  122 (268)
T 1arb_A           75 YQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNA  122 (268)
T ss_dssp             CCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEETTTTEEEEEESSC
T ss_pred             CCCCccccccccccccccCCcceEEeccceEecCCCCCceEEEEecCC
Confidence            110           0      1 1112344555567899999999753

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=97.49  E-value=0.0014  Score=53.82  Aligned_cols=88  Identities=19%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       +  .+.|.+-..+     .....+..+-+...+       ..||||||++
T Consensus        26 ~~~CgGsLI~~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~   95 (227)
T 1euf_A           26 SHICGGFLVRE-DFVLTAAHCLG-------S--SINVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLT   95 (227)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------E--EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             ceEEEEEEeeC-CEEEECHHHCC-------C--CcEEEEcccccCCCCCccEEEEEEEEEeCCCCCCCCCcCceEEEEEC
Confidence            35699999997 69999999998       2  4556553211     011123333333332       4699999998


Q ss_pred             cCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....|+.|.... .+..|+.+++.|+..
T Consensus        96 ~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  129 (227)
T 1euf_A           96 RKADITDKVSPINLPRSLAEVKPGMMCSVAGWGR  129 (227)
T ss_dssp             SCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCB
T ss_pred             CcCcCCCceeccCCCCccccCCCCCEEEEEEEcc
Confidence            542   235677775543 468899999999854

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=97.49  E-value=0.00084  Score=55.36  Aligned_cols=86  Identities=15%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEc-------CCCcEEEEEEc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCD-------PAYDLAVLKVD  186 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d-------~~~DlAvLki~  186 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+...+      .....+..+-+...       ...||||||++
T Consensus        23 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DIALl~L~   92 (231)
T 2aiq_A           23 SLCGGTLINQ-EWVLTARHCDR-------G--NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLN   92 (231)
T ss_dssp             EEEEEEECSS-SEEEECGGGCC-------S--SCEEEESCSCTTSCCTTCEEECEEEEECCSSCCSSSTTTTCCEEEEES
T ss_pred             CeEEEEEEeC-CEEEEcHHcCC-------C--CCEEEEecccccccCCCceEEEEEEEEEECCCCCCCCCCCCEEEEEec
Confidence            4699999997 69999999998       3  2344443211      11112222222222       24699999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ..+.++.|... ....|+.+++.|+..
T Consensus        93 ~~v~~~~~v~picL~~~-~~~~~~~~~v~GwG~  124 (231)
T 2aiq_A           93 RPVRNSAHIAPLSLPSN-PPSVGSVCRIMGWGT  124 (231)
T ss_dssp             SCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSC
T ss_pred             CCCCCCCcEEeeECCCC-CCCCCCEEEEEeCCc
Confidence            542   23567777543 457899999999865

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=97.48  E-value=0.0014  Score=53.95  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc------------------C
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD------------------P  176 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d------------------~  176 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..     +.....+..+-+...                  .
T Consensus        24 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~   93 (238)
T 1spj_A           24 FQCGGILVHR-QWVLTAAHCIS-------D--NYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDY   93 (238)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------S--SEEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGCC--CTTTCCC
T ss_pred             eeEEEEEecC-CEEEEcHHhCC-------C--CceEEEEeccccCCCCCceEEEEEEEEcCCCccccccccccccccccC
Confidence            5799999997 69999999998       3  244544211     011112233322222                  2


Q ss_pred             CCcEEEEEEccCCC----CccceEcCCCCCCCCCCeEEEEecCC
Q 027022          177 AYDLAVLKVDVEGF----ELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       177 ~~DlAvLki~~~~~----~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      ..||||||++.+-.    ...++.|.. .....|+.+++.|+..
T Consensus        94 ~~DIALl~L~~~~~~~~~~v~pi~L~~-~~~~~~~~~~v~GwG~  136 (238)
T 1spj_A           94 SHDLMLLRLTEPADTITDAVKVVELPT-EEPEVGSTCLASGWGS  136 (238)
T ss_dssp             TTCCEEEEESSCCCCSSTTCCCCCCCS-SCCCTTCEEEEEESSC
T ss_pred             CCCeEEEEECccccccCCceeeccCCC-CCCCCCCEEEEEecCC
Confidence            45999999985422    356777754 4567899999999864

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=97.48  E-value=0.0017  Score=53.54  Aligned_cols=89  Identities=19%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+        ..+.|.+-..+     +....+..+-+...+       ..||||||++
T Consensus        23 ~~~CgGtLIs~-~~VLTAAHC~~~--------~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~DIALl~L~   93 (234)
T 1orf_A           23 KTICAGALIAK-DWVLTAAHCNLN--------KRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLT   93 (234)
T ss_dssp             SCEEEEEEEET-TEEEECTTCCCC--------TTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             ceEEEEEEeeC-CEEEEchhcCCC--------CCceEEEeccccCcCCCceEEEEEEEEEcCCCCCCCCCCCCEEEEEEC
Confidence            35799999997 699999999973        23455543211     111133333333322       4699999998


Q ss_pred             cCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....|+.|.... .+..|+.+++.|+..
T Consensus        94 ~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  127 (234)
T 1orf_A           94 EKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGR  127 (234)
T ss_dssp             SCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSC
T ss_pred             CcCccCCCeeeeecCCCcCCCCCCCEEEEEECCc
Confidence            542   235666675443 358899999999854

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=97.45  E-value=0.00076  Score=55.85  Aligned_cols=90  Identities=23%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+     +....+..+.+...+       ..|||||+++
T Consensus        24 ~~~CgGtLIs~-~~VLTAAhC~~-------~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~   95 (241)
T 2jkh_A           24 EGFCGGTILSE-FYILTAAHCLY-------QAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLK   95 (241)
T ss_dssp             CEEEEEEECSS-SEEEECGGGGG-------SCSSCEEEESCSBTTCCCSCCEEECEEEEEECTTCBTTTTBTCCEEEEES
T ss_pred             CcEEEEEEeeC-CEEEEcHHHcC-------CCCcEEEEECCccCCCCCCCcEEEEeEEEEeCCCCCCCCCCCcEEEEEEC
Confidence            35799999997 69999999998       4455677764221     111133444444333       3599999998


Q ss_pred             cCC---CCccceEcCCCC----CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH----DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~----~~~~G~~V~aiG~P~  216 (229)
                      .+-   ..+.|+.|...+    .+..|+.+++.|+..
T Consensus        96 ~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  132 (241)
T 2jkh_A           96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR  132 (241)
T ss_dssp             SCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCB
T ss_pred             CcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCC
Confidence            542   135566664322    256799999999854

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=97.42  E-value=0.0013  Score=54.31  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=58.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEEcC-------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+-..       +++  .+..+-+...+       ..||||||
T Consensus        26 ~~~CgGtLI~~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~--~~~v~~i~~Hp~y~~~~~~~DIALl~   98 (238)
T 3bg8_A           26 RHLCGGSIIGN-QWILTAAHCFYGVE----SPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHDQYKMAESGYDIALLK   98 (238)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGTTCC----CGGGEEEECSCSBGGGCCTTSC--CEEEEEEEECTTCCCGGGSCCCEEEE
T ss_pred             cEEEEEEEeeC-CEEEECHHHCCCCC----CCceEEEEEeeccCCcCCCCce--EEeeEEEEECCCCCCCCCCCcEEEEE
Confidence            35699999997 69999999997421    234566655311       122  23333333333       46999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....|+.|.... ....|+.+++.|+..
T Consensus        99 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  134 (238)
T 3bg8_A           99 LETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGY  134 (238)
T ss_dssp             ESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCC
T ss_pred             ECCccccCCCcccCCCCCCccCcCCCCeEEEEecCC
Confidence            98542   235666675432 367899999999864

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=97.41  E-value=0.0014  Score=53.88  Aligned_cols=93  Identities=11%  Similarity=0.024  Sum_probs=59.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+.     ....+.|.+-..+     .....+..+-+...+       ..||||||++
T Consensus        25 ~~~CgGtLIs~-~~VLTAAHC~~~~-----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~   98 (238)
T 1ym0_A           25 SHFCGGSIIND-RWVVCAAHCMQGE-----APALVSLVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTA   98 (238)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHTTC-----CGGGEEEEESCSBTTSCCSSCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             ceEEEEEEeeC-CEEEECHHhCCCC-----CCceEEEEEcccccCCCCCCceEEEEEEEEECCCCCCCCCcccEEEEEeC
Confidence            35799999997 6999999999842     2356677664211     011123333333332       4699999998


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....|+.|........|+.+++.|+...
T Consensus        99 ~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~  132 (238)
T 1ym0_A           99 VAITFDINVGPICAPDPANDYVYRKSQCSGWGTI  132 (238)
T ss_dssp             SCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCS
T ss_pred             CCccccCcccccCCCCCcCCCCCCceEEEeecCC
Confidence            542   2356777755443338999999998643

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.40  E-value=0.00079  Score=58.25  Aligned_cols=90  Identities=12%  Similarity=0.016  Sum_probs=59.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC--CCCeeEEeEEEEEEcC-------CCcEEEEEEccCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA--KGNGFYREGKMVGCDP-------AYDLAVLKVDVEG  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~--~g~~~~~~A~vv~~d~-------~~DlAvLki~~~~  189 (229)
                      ....+|.||++ -+|||++|.+.       +...+.|.+...  +.....+..+-+...+       ..||||||++.+-
T Consensus       117 ~~~CgGtLIs~-~~VLTAAHC~~-------~~~~~~V~~G~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~pv  188 (317)
T 3h5c_B          117 KDFCGGVIIRE-NFVLTTAKCSL-------LHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPI  188 (317)
T ss_dssp             CEEEEEEEEET-TEEEECHHHHH-------SCSSCEEEECTTSCTTSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCC
T ss_pred             ceeeeeEEeeC-CEEEEChHhcC-------cCCceEEEEeeecCCCCcEEEEeeEEEECCCCCCCCCCCCeEEEEeCCcc
Confidence            34689999997 69999999997       445667776421  1111133333333333       3599999998542


Q ss_pred             ---CCccceEcCCCC----CCCCCCeEEEEecCC
Q 027022          190 ---FELKPVVLGTSH----DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ---~~~~~l~lg~s~----~~~~G~~V~aiG~P~  216 (229)
                         ..+.|+.|....    .+..|+.+++.|+..
T Consensus       189 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  222 (317)
T 3h5c_B          189 QCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR  222 (317)
T ss_dssp             CTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT
T ss_pred             cCCCCccceeCCCcccccccccCCCeEEEEecCC
Confidence               235677775432    467899999999854

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=97.40  E-value=0.00086  Score=55.25  Aligned_cols=95  Identities=14%  Similarity=0.027  Sum_probs=54.3

Q ss_pred             cceEEEEEEc---CCcEEEEccccccccccCCCCcceEEEEEecCCCCe--eEEeEEEEEE--------cCCCcEEEEEE
Q 027022          119 EGTGSGFVWD---KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNG--FYREGKMVGC--------DPAYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~---~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~--~~~~A~vv~~--------d~~~DlAvLki  185 (229)
                      ....+|.||+   + -+|||++|.+.+.... .....+.|..-..++..  ..+..+-+..        +...||||||+
T Consensus        20 ~~~CgGslI~s~s~-~~VLTAAHC~~~~~~~-~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y~~~~~~~~DiAll~L   97 (218)
T 3cp7_A           20 DFVCSANIVASANQ-STVATAGHCLHDGNGG-QFARNFVFAPAYDYGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVL   97 (218)
T ss_dssp             EEEEEEEEBCCTTS-CEEEECGGGTBCCTTC-BBCEEEEEEETCSSSCCTTCCEEEEEEEECHHHHHHCCGGGCCEEEEE
T ss_pred             CeEEEEEEEecCCC-CEEEEChHhcCcCCCC-eeecCEEEECcccCCCCCccEEEEEEEEECcccccCCCCcCCEEEEEE
Confidence            3579999998   5 5999999999732100 00134555442211110  0122222222        23569999999


Q ss_pred             ccCC-CC----cc-ceEcCCCCCCCCCCeEEEEecCCC
Q 027022          186 DVEG-FE----LK-PVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       186 ~~~~-~~----~~-~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +.+. ..    .. ++.|...  ...|+.+.+.|++..
T Consensus        98 ~~~~~~~~~~~v~~~~~l~~~--~~~g~~~~v~GwG~~  133 (218)
T 3cp7_A           98 ETKGGTTVQQQVGTASPIAFN--QPRGQYYSAYGYPAA  133 (218)
T ss_dssp             CCBTTBCHHHHHSCCBCBCCS--CCSSCEEEEEECCCS
T ss_pred             eCCCCcChhHhcCcccceeec--CCCCCEEEEEeCCCC
Confidence            8541 11    22 5566432  257999999999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=97.40  E-value=0.0018  Score=53.54  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=57.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEEcC-------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.+..    ..+.+.|.+-..       .+.  .+..+-+...+       ..|||||+
T Consensus        26 ~~~CgGtLI~~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~--~~~v~~i~~Hp~y~~~~~~~DIALl~   98 (241)
T 2any_A           26 RHLCGGSLIGH-QWVLTAAHCFDGLP----LQDVWRIYSGILELSDITKDTP--FSQIKEIIIHQNYKVSEGNHDIALIK   98 (241)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGSSCC----CSTTEEEECSCSBGGGCCTTSC--CBCEEEEEECTTCCTTSSSSCCEEEE
T ss_pred             ceEEEEEEecC-CEEEECHHHcCCCC----CCccEEEEeeeeeccccccCce--EEeeEEEEECCCCCCCCCCCCeEEEE
Confidence            35699999997 69999999998421    123455554211       111  22233333332       46999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....|+.|.... ....|+.+++.|+...
T Consensus        99 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  135 (241)
T 2any_A           99 LQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFS  135 (241)
T ss_dssp             ESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCS
T ss_pred             eCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccC
Confidence            98542   124566665433 3678999999998653

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=97.39  E-value=0.0036  Score=53.56  Aligned_cols=93  Identities=17%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---C-------CeeEEeEEEEEEcC-------CCcEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---G-------NGFYREGKMVGCDP-------AYDLA  181 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g-------~~~~~~A~vv~~d~-------~~DlA  181 (229)
                      .....|.||++ -+|||++|.+.+..    ....+.|.+-..+   +       ....+..+-+...+       ..|||
T Consensus        29 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~nDIA  103 (290)
T 1fiw_A           29 YHVCGGSLLNS-QWLLTAAHCFRIKK----KVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIA  103 (290)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGSSCC----SGGGEEEEESCSBCCTTCCSCCCTTCEEEEEEEEEECTTCBTTTTBTCCE
T ss_pred             ceEEEEEEeeC-CEEEECHHhCCCCC----CCcceEEEecceEEeccCCCcCCCCceEEEEEEEEECCCCCCCCCCCCEE
Confidence            35699999997 69999999997421    2345666653210   0       00122222232222       36999


Q ss_pred             EEEEccCC---CCccceEcCCCC--CCCCCCeEEEEecCC
Q 027022          182 VLKVDVEG---FELKPVVLGTSH--DLRVGQSCFAIGNPY  216 (229)
Q Consensus       182 vLki~~~~---~~~~~l~lg~s~--~~~~G~~V~aiG~P~  216 (229)
                      |||++.+-   ..+.|+.|....  ....|+.+++.|+..
T Consensus       104 Ll~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~  143 (290)
T 1fiw_A          104 LMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGF  143 (290)
T ss_dssp             EEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCC
T ss_pred             EEEECCccccCCccccccCCCccccCcCCCCeEEEEEecc
Confidence            99998542   235566665432  245799999999864

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=97.38  E-value=0.0026  Score=52.88  Aligned_cols=89  Identities=17%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec--CC---CCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD--AK---GNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~--~~---g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.+|++ -+|||++|.+.+        ....|.+-.  ..   .....+..+-+...+       ..||||||++.
T Consensus        40 ~~CgGtLI~~-~~VLTAAHC~~~--------~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  110 (245)
T 1t8o_A           40 HFCGGSLINE-NWVVTAAHCGVT--------TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLST  110 (245)
T ss_dssp             EEEEEEEEET-TEEEECGGGCCC--------TTSEEEESCSBTTCSSSCCEEEEEEEEEECTTCCTTTCCSCCEEEEESS
T ss_pred             eEEEEEEeeC-CEEEEcHHhCcC--------CCcEEEEeeeecCCCCCCcEEEEEEEEEeCCCCCCCCCCCCEEEEEECC
Confidence            4699999997 699999999973        223344421  10   111123333333332       46999999985


Q ss_pred             CC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....|+.|.... .+..|+.+++.|+...
T Consensus       111 ~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~  144 (245)
T 1t8o_A          111 AASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT  144 (245)
T ss_dssp             CCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCS
T ss_pred             CCcCCCceeeeECCCCccCCCCCCEEEEEEeCCC
Confidence            42   235667775433 4678999999998643

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=97.36  E-value=0.0011  Score=54.99  Aligned_cols=86  Identities=22%  Similarity=0.261  Sum_probs=52.0

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEE------------------cC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGC------------------DP  176 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~------------------d~  176 (229)
                      ...+|.+|++ -+|||++|.+.       +  .+.|.+-..     +.....+..+-+..                  ..
T Consensus        27 ~~CgGsLIs~-~~VLTAAHC~~-------~--~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~   96 (240)
T 1sgf_A           27 YQCGGVLLDR-NWVLTAAHCYN-------D--KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY   96 (240)
T ss_dssp             CCEEEEECSS-SEEEECGGGCC-------S--CCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----CCTTCBC
T ss_pred             eEEEEEEecC-CEEEECHHhCC-------C--CceEEeCCcccccCCCCceEEEEEEEEcCCCCcccccccccccccCCC
Confidence            5799999997 69999999997       2  233443211     11111222222222                  23


Q ss_pred             CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          177 AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       177 ~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      ..|||||+++.+-   ..+.|+.|.. .....|+.+++.|+..
T Consensus        97 ~~DIALl~L~~~~~~~~~v~picL~~-~~~~~~~~~~v~GwG~  138 (240)
T 1sgf_A           97 SNDLMLLRLSKPADITDVVKPITLPT-EEPKLGSTCLASGWGS  138 (240)
T ss_dssp             TTCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEC----
T ss_pred             CCceEEEEeCCcCcCCCcccccCCCC-CCCCCCCEEEEEecCC
Confidence            4699999998542   2366777854 3568899999999754

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=97.36  E-value=0.0039  Score=52.68  Aligned_cols=96  Identities=21%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--C--------------CeeEEeEEEEEEcC------
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--G--------------NGFYREGKMVGCDP------  176 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g--------------~~~~~~A~vv~~d~------  176 (229)
                      ....+|.+|++ -+|||++|.+.+.... .....+.|.+-.-+  .              ....+..+-+...+      
T Consensus        50 ~~~CgGsLIs~-~~VLTAAHC~~~~~~~-~~~~~~~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~  127 (278)
T 2olg_A           50 QFACGGSLINN-RYIVTAAHCVAGRVLR-VVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGS  127 (278)
T ss_dssp             EEEEEEEECSS-SEEEECGGGTSTHHHH-HTCEEEEEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTC
T ss_pred             ceeEEEEEEeC-CEEEEhHHhCCCcccc-cccceeEEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCC
Confidence            45699999997 6999999999731000 01234566653210  0              01122222222221      


Q ss_pred             ---CCcEEEEEEccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          177 ---AYDLAVLKVDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       177 ---~~DlAvLki~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                         ..||||||++.+-   ..+.|+.|.... .+..|+.+++.|+..
T Consensus       128 ~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GWG~  174 (278)
T 2olg_A          128 KDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGR  174 (278)
T ss_dssp             SSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCC
T ss_pred             CCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcCCc
Confidence               4699999998542   235677775543 478899999999864

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=97.32  E-value=0.0013  Score=54.62  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC----CCCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA----KGNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~----~g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ....+|.+|++ -+|||++|.+.+..   .+...+.|.+...    .++  .+..+-+...+       ..||||||++.
T Consensus        26 ~~~CgGtLIs~-~~VLTAAHC~~~~~---~~~~~~~v~~g~~~~~~~~~--~~~v~~i~~Hp~y~~~~~~~DIALl~L~~   99 (245)
T 2f9n_A           26 MHFCGGSLIHP-QWVLTAAHCVGPDV---KDLATLRVQLREQHLYYQDQ--LLPVSRIIVHPQFYIIQTGADIALLELEE   99 (245)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGCSSC---CCGGGEEEECSCSBTTTTCC--CBCEEEEEECTTCCSSCCTTCCEEEEESS
T ss_pred             ceEEEEEEeeC-CEEEECHHhCCCCC---CCcceEEEEeCCcccccCce--EEEEEEEEECCCccCCCCCCcEEEEEeCC
Confidence            35799999997 69999999996321   1345566665321    112  22333333332       35999999985


Q ss_pred             CC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      +-   ..+.|+.|... ..+..|+.+++.|+..
T Consensus       100 ~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  132 (245)
T 2f9n_A          100 PVNISSRVHTVMLPPASETFPPGMPCWVTGWGD  132 (245)
T ss_dssp             CCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCC
T ss_pred             CCcCCCCccccCCCCcccCCCCCCEEEEEEeCC
Confidence            42   23566777543 3467899999999864

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=97.29  E-value=0.0014  Score=54.06  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=55.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCC----eeEEeEEEEEEcC----------CCcEEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGN----GFYREGKMVGCDP----------AYDLAVLKV  185 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~----~~~~~A~vv~~d~----------~~DlAvLki  185 (229)
                      ...+|.+|++ -+|||++|.+.+..........+.|.+-..+-.    ...+..+-+...+          ..||||||+
T Consensus        22 ~~CgGtLIs~-~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L  100 (242)
T 2qy0_B           22 GRGGGALLGD-RWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLEL  100 (242)
T ss_dssp             SEEEEEEETT-TEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEEECTTCCTTCSSCCTTCCEEEEE
T ss_pred             CCEEEEEEeC-CEEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEEECCCCccCcCCCCCCcEEEEEE
Confidence            4689999997 699999999973211111223455665321100    0011222222222          349999999


Q ss_pred             ccCC---CCccceEcCCCCC-CCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTSHD-LRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~~-~~~G~~V~aiG~P~  216 (229)
                      +.+-   ..+.|+.|..... +..|+.+++.|+..
T Consensus       101 ~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  135 (242)
T 2qy0_B          101 ENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV  135 (242)
T ss_dssp             SSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCC
T ss_pred             CCCCcCCCCcceeecCCCccccCCCCeEEEEeecc
Confidence            8542   2356777754432 57899999999754

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=97.15  E-value=0.0032  Score=52.45  Aligned_cols=93  Identities=16%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.|.+-..+     +....+..+-+...+       ..|||||+++
T Consensus        23 ~~~CgGtLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~   97 (254)
T 2bz6_H           23 AQLCGGTLINT-IWVVSAAHCFDKIK----NWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLH   97 (254)
T ss_dssp             EEEEEEEECSS-SEEEECGGGGTTCS----CGGGEEEEESCCBTTCCCSCCEEEEEEEEEEETTCCTTSCSSCCEEEEES
T ss_pred             CcEEEEEEecC-CEEEECHHHcCCCC----CcceEEEEECCcccCCCCCCcEEEEEEEEEECCCCCCCCCcCcEEEEEEC
Confidence            35799999997 69999999998421    2245777764211     111123333232222       4699999998


Q ss_pred             cCC---CCccceEcCCCC----CCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGTSH----DLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~----~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....|+.|....    .+..|+.+++.|+..
T Consensus        98 ~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  134 (254)
T 2bz6_H           98 QPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ  134 (254)
T ss_dssp             SCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCB
T ss_pred             CccccCCCccceECCCCccccccccCCCcEEEEeCcc
Confidence            542   235566664322    245789999999753

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=97.12  E-value=0.0017  Score=53.46  Aligned_cols=90  Identities=17%  Similarity=0.066  Sum_probs=54.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEc---------CCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCD---------PAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d---------~~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.|.+-..+     .....+..+-+...         ...||||||
T Consensus        23 ~~~CgGtLIs~-~~VLTAAhC~~-------~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~   94 (235)
T 2wph_S           23 DAFCGGSIVNE-KWIVTAAHCVE-------TGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLE   94 (235)
T ss_dssp             TTCEEEEEEET-TEEEECGGGCC-------TTSCCEEEESCCBTTSCCSCCEEEEEEEEEECTTTTSSSSCCTTCCEEEE
T ss_pred             CeeEEEEEEeC-CEEEECHHHCc-------CCCCEEEEEcccccCCCCCCcEEeeeEEEEeCCCCcccCCcCCCCEEEEE
Confidence            35799999997 69999999998       4445666663211     11112232222222         235999999


Q ss_pred             EccCC---CCccceEcCCCCC---CCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSHD---LRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~---~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....|+.|.....   +..++.+++.|+..
T Consensus        95 L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~  132 (235)
T 2wph_S           95 LDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGR  132 (235)
T ss_dssp             ESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSB
T ss_pred             ECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCC
Confidence            98542   1345666643221   24688899999753

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=97.10  E-value=0.018  Score=48.19  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=57.6

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC------CCCeeEEeEEEEEEcC---------CCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA------KGNGFYREGKMVGCDP---------AYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~------~g~~~~~~A~vv~~d~---------~~DlAvLk  184 (229)
                      ....|.||++ -+|||++|.+.+..    ....+.|.+...      ++.. .+..+-+...+         +.|||||+
T Consensus        52 ~~CgGsLIs~-~~VLTAAHCv~~~~----~~~~~~v~~g~~~~~~~~~~~~-~~~v~~i~~Hp~y~~~~~~~~~Diall~  125 (276)
T 2vnt_A           52 YVCGGSLMSP-CWVISATHCFIDYP----KKEDYIVYLGRSRLNSNTQGEM-KFEVENLILHKDYSADTLAHHNDIALLK  125 (276)
T ss_dssp             EEEEEEEEET-TEEEECGGGTTTCC----CGGGEEEEESCCBSSSCCTTCE-EEEEEEEEECTTCEECSSCEESCCEEEE
T ss_pred             eEEEEEEeeC-CEEEECcccccCCC----CCccEEEEeeeeeccCCCCceE-EEEEEEEEEccccccccccccchhhhhh
Confidence            4689999997 69999999997432    334455555321      1121 33333333322         35999999


Q ss_pred             EccC-------CCCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          185 VDVE-------GFELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~-------~~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                      ++..       .....++.|.. ...+..|+.+.+.|...+
T Consensus       126 L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~  166 (276)
T 2vnt_A          126 IRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKE  166 (276)
T ss_dssp             EECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCS
T ss_pred             hhccccccccCcccccccccccccccccccceEEEEEeecc
Confidence            9743       12345666643 345788999999987665

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=97.04  E-value=0.0077  Score=53.47  Aligned_cols=92  Identities=18%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc-------------CCCcE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD-------------PAYDL  180 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d-------------~~~Dl  180 (229)
                      .....|.||++ -+|||++|.+.....   ....+.|.+-..     .+.  .+..+-+...             ...||
T Consensus       140 ~~~CgGsLIs~-~~VLTAAHCv~~~~~---~~~~~~V~~G~~~~~~~~~~--~~~V~~i~~Hp~y~~~~~~~~~~~~nDI  213 (372)
T 1z8g_A          140 AHLCGGSLLSG-DWVLTAAHCFPERNR---VLSRWRVFAGAVAQASPHGL--QLGVQAVVYHGGYLPFRDPNSEENSNDI  213 (372)
T ss_dssp             EEEEEEEESSS-SEEEECGGGCCGGGC---CGGGEEEEESCSBTTCTTSE--EECEEEEEEETTCGGGTCTTCCCCTTCC
T ss_pred             ceEEEEEEecC-CEEEEChhhcCCCCC---ccceEEEEEeeEeccCCCCc--EEEEEEEEECCCccccccCCCCCCCccE
Confidence            34679999997 699999999952110   234566665321     121  2233222222             13599


Q ss_pred             EEEEEccCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          181 AVLKVDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       181 AvLki~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      ||||++.+-   ..+.|+.|... ..+..|+.+++.|+..
T Consensus       214 ALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~  253 (372)
T 1z8g_A          214 ALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGN  253 (372)
T ss_dssp             EEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSB
T ss_pred             EEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCC
Confidence            999998542   23567777543 3467899999999864

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=96.95  E-value=0.0059  Score=54.84  Aligned_cols=94  Identities=18%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC----CC---eeEEeEEEEEEcC-------CCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK----GN---GFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~----g~---~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      .....|.+|++ -||||++|.+.+...   +...+.|.+-.-+    ..   ...+..+-+...+       ..|||||+
T Consensus       161 ~~~CGGsLIs~-~~VLTAAHCv~~~~~---~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~  236 (394)
T 2b9l_A          161 QLVCGGSLIAP-SVVLTGAHCVNSYQS---NLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLL  236 (394)
T ss_dssp             SEEEEEEEEET-TEEEECHHHHGGGTT---CGGGEEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEE
T ss_pred             ceEeeEEEEeC-CEEEeccceecCCCC---CcccEEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEE
Confidence            45799999997 699999999984311   1256777764211    00   0122333333332       35999999


Q ss_pred             EccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ..+.|+-|........|+.+++.|+..
T Consensus       237 L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~  271 (394)
T 2b9l_A          237 LDRPLVQADNIGTICLPQQSQIFDSTECFASGWGK  271 (394)
T ss_dssp             ESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCT
T ss_pred             ecCccccCCceeeeEcCCcccCccCCEEEEEeccC
Confidence            98542   236677776555556788999999754

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=96.93  E-value=0.00098  Score=58.97  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCC----cceEEEEEecCCCCeeEEeEEEEEEcC---CCcEEEEEEccCC--
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSG----LHRCKVSLFDAKGNGFYREGKMVGCDP---AYDLAVLKVDVEG--  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~----~~~~~V~~~~~~g~~~~~~A~vv~~d~---~~DlAvLki~~~~--  189 (229)
                      .....|.||++ .+|||++|.+.........    ....  ....+..+  .+..+-+...+   ..||||||++.+-  
T Consensus       125 ~~~CGGsLIs~-~~VLTAAHCv~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~V~~i~~HP~y~~nDIALlkL~~~v~~  199 (347)
T 4f4o_C          125 NLTSGATLINE-QWLLTTAKNLRLGHKNDTKAKDIAPTL--RLYVGKKQ--EVEIEKVIFHPDNSTVDIGLIKLKQKVPV  199 (347)
T ss_dssp             CCEEECCBCSS-SEEEECHHHHTTTSCTTCCHHHHGGGC--EEEETTTE--EECEEEEEECSCTTTCCCEEEEESSCCCC
T ss_pred             CEEEEEEEEcC-CEEEeCcccccCCCCCcceEEeeeeee--eecCCCeE--EEEEEEEEECcCCCCCCEEEEEECCCccC
Confidence            35689999997 6999999999743211100    1111  22233233  33444444444   4699999998541  


Q ss_pred             -CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          190 -FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 -~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                       ....|+.|...+.+..|+..++.|....
T Consensus       200 ~~~v~PicLp~~~~~~~g~~~~v~GWG~~  228 (347)
T 4f4o_C          200 NERVMPICLPSKDYVNVGLVGYVSGWGRN  228 (347)
T ss_dssp             SSSCCCCBCCSSCCCCTTCEEEEEECSBC
T ss_pred             CCceeeeecCccccCCCCcEEEEeccccC
Confidence             3467788876677889999999987543

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=96.82  E-value=0.014  Score=57.19  Aligned_cols=93  Identities=18%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEe-EEEEEEcCCCcEEEEEEccCC---
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYRE-GKMVGCDPAYDLAVLKVDVEG---  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~-A~vv~~d~~~DlAvLki~~~~---  189 (229)
                      ....+|.||++ -+|||++|.+.+..    ....+.|.+-..+     .....+. .+++......|||||+++.+-   
T Consensus       585 ~~~CGGSLIs~-~wVLTAAHCv~~~~----~~~~~~V~lG~~~~~~~~~~~q~~~V~~i~~hp~~nDIALLkL~~pv~~s  659 (791)
T 4dur_A          585 MHFCGGTLISP-EWVLTAAHCLEKSP----RPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVIT  659 (791)
T ss_dssp             CEEEEEEEEET-TEEEECGGGGSSCC----CGGGCEEEESCCBSSSCCTTCEEEEEEEEEECTTCCSCEEEEESSCCCCC
T ss_pred             CeEEEEEEEeC-CEEEECHHHcCCcC----CCceEEEEeccccccCCCCccEEEEEEEEECCCCCCceEEEEecCccccC
Confidence            35699999997 69999999997421    2345666663211     0111222 233333345799999997542   


Q ss_pred             CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          190 FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      ..+.++-|.... .+..|+.+++.|+..
T Consensus       660 ~~V~PIcLP~~~~~~~~g~~~~vsGWG~  687 (791)
T 4dur_A          660 DKVIPACLPSPNYVVADRTECFITGWGE  687 (791)
T ss_dssp             SSCCCCBCCCTTCCCCTTCEEEEEECCC
T ss_pred             CceeeeeccCcccccCCCCEEEEEEeCC
Confidence            235666664432 467899999999864

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=96.82  E-value=0.016  Score=52.26  Aligned_cols=92  Identities=17%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CC--------------eeEEeEEEEEEcC-----
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GN--------------GFYREGKMVGCDP-----  176 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~--------------~~~~~A~vv~~d~-----  176 (229)
                      .....|.+|++ -||||++|.+.+.     ..+.+.|.+-.-+   ..              ...+..+-+...+     
T Consensus       145 ~~~CGGsLIs~-~~VLTAAHCv~~~-----~~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~  218 (408)
T 2xxl_A          145 RFLCGGAMISE-RYILTAAHCVHGL-----QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDAR  218 (408)
T ss_dssp             EEEEEEEEEET-TEEEECGGGTTTC-----TTTEEEEEESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTT
T ss_pred             eEEEEEEEEEC-CEEEEcHHhcCCC-----CCceEEEEeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCcc
Confidence            45799999997 6999999999842     2345667663211   00              0122222222222     


Q ss_pred             --CCcEEEEEEccCC---CCccceEcCCCCC----CCCCCeEEEEecCC
Q 027022          177 --AYDLAVLKVDVEG---FELKPVVLGTSHD----LRVGQSCFAIGNPY  216 (229)
Q Consensus       177 --~~DlAvLki~~~~---~~~~~l~lg~s~~----~~~G~~V~aiG~P~  216 (229)
                        ..|||||+++.+-   ..+.|+-|.....    ...|+.+++.|+..
T Consensus       219 ~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~  267 (408)
T 2xxl_A          219 HIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGT  267 (408)
T ss_dssp             TTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCC
T ss_pred             ccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCc
Confidence              3599999998542   2356777754332    57899999999754

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=96.81  E-value=0.0051  Score=54.93  Aligned_cols=93  Identities=16%  Similarity=0.117  Sum_probs=58.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeEEEEEEc--------CCCcEEEEEEccC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREGKMVGCD--------PAYDLAVLKVDVE  188 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A~vv~~d--------~~~DlAvLki~~~  188 (229)
                      ....|.||++ -+|||++|.+.+...   +...+.|.+-..+   .....+..+-+...        ...||||||++.+
T Consensus       183 ~~CgGsLIs~-~~VLTAAHC~~~~~~---~~~~~~V~~G~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~  258 (403)
T 1zjk_A          183 TTAAGALLYD-NWVLTAAHAVYEQKH---DASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK  258 (403)
T ss_dssp             CCEEEEEETT-TEEEECHHHHGGGTT---CSTTEEEEESCSBTTCSCCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSC
T ss_pred             CceEEEEecC-CEEEEcHHhCCCCCC---CcceEEEEccccccCCCCceEEeEEEEEECCCCCCCCCCcccEEEEEeCCc
Confidence            4689999997 699999999974311   2455667664311   11112233323222        2469999999854


Q ss_pred             C---CCccceEcCCCCC---CCCCCeEEEEecCC
Q 027022          189 G---FELKPVVLGTSHD---LRVGQSCFAIGNPY  216 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~---~~~G~~V~aiG~P~  216 (229)
                      -   ..+.|+-|.....   +..|+.+++.|+..
T Consensus       259 v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~  292 (403)
T 1zjk_A          259 VVINSNITPICLPRKEAESFMRTDDIGTASGWGL  292 (403)
T ss_dssp             CCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCT
T ss_pred             CcCCCceecccCCCcccccccCCCCeEEEEcCCc
Confidence            2   2356777754332   67899999999764

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=96.79  E-value=0.0082  Score=53.40  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEE-E--Ec------CCCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMV-G--CD------PAYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv-~--~d------~~~DlAvLk  184 (229)
                      +...|.||++ -+|||++|.+.+..........+.|.+-..+      ...+.. .+++ .  ++      ...||||||
T Consensus       179 ~~CgGsLIs~-~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v-~~i~~Hp~y~~~~~~~~~~DIALl~  256 (399)
T 1gpz_A          179 GRGGGALLGD-RWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPI-RRVSVHPDYRQDESYNFEGDIALLE  256 (399)
T ss_dssp             SEEEEEEETT-TEEEECGGGTSCTTC-----CCCEEEESCSBHHHHHHTCCCCE-EEEEECSSCCSSSSSCCTTCCEEEE
T ss_pred             CCeEEEEeCC-CEEEeChhcccccccccCCcceEEEEeccccccccccccccce-EEEEECCCCCcCCCCCCCCcEEEEE
Confidence            4689999997 6999999999743211111234556553211      011112 2222 1  11      135999999


Q ss_pred             EccCC---CCccceEcCCCCC-CCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSHD-LRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~-~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ..+.|+-|...+. ...|+.+++.|+..
T Consensus       257 L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~  292 (399)
T 1gpz_A          257 LENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV  292 (399)
T ss_dssp             ESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-
T ss_pred             ECCcCcCCCceeeeecCCCccccCCCCEEEEEccCC
Confidence            98542   2356677754432 46799999999753

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=96.78  E-value=0.0073  Score=52.71  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=54.3

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEE---Ec------CCCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVG---CD------PAYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~---~d------~~~DlAvLk  184 (229)
                      ..+.|.+|++ -+|||++|.+.+..........+.|.+-..+      ...+.. .+++.   ++      ...||||||
T Consensus       111 ~~CgGsLIs~-~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~V-~~i~~Hp~y~~~~~~~~~nDIALl~  188 (329)
T 1md8_A          111 GRGGGALLGD-RWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPI-RRVSVHPDYRQDESYNFEGDIALLE  188 (329)
T ss_dssp             SEEEEEEETT-TEEEECGGGTSCTTC-----CCCCEEESCSBHHHHHHHCCCCE-EEEEECSSCCSSCTTCCTTCCEEEE
T ss_pred             CCcceEEecC-CEEEecCCEEEeCCcccCCCceEEEEeccccccccccccceee-EEEEECCCcccccCCCCCccEEEEE
Confidence            4589999997 6999999999732111002234455553211      001111 22221   12      235999999


Q ss_pred             EccCC---CCccceEcCCCCC-CCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSHD-LRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~~-~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ..+.|+-|.+.+. ...|+.+++.|+..
T Consensus       189 L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~  224 (329)
T 1md8_A          189 LENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGV  224 (329)
T ss_dssp             ESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCB
T ss_pred             ECCcccCCCceEccccCCCccccCCCCEEEEEeCCC
Confidence            98542   2356777754332 46799999999753

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=96.65  E-value=0.0094  Score=50.74  Aligned_cols=97  Identities=14%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccC-CCCcceEEEEEecCC------CCeeEEeEEEEEE----c----CCCcEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATD-TSGLHRCKVSLFDAK------GNGFYREGKMVGC----D----PAYDLAVL  183 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~-~~~~~~~~V~~~~~~------g~~~~~~A~vv~~----d----~~~DlAvL  183 (229)
                      .....|.||++ -+|||++|.+...... ......+.|.+-..+      +....+..+-+..    +    ...|||||
T Consensus        55 ~~~CgGsLIs~-~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl  133 (289)
T 2bdy_A           55 ELLCGASLISD-RWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM  133 (289)
T ss_dssp             EEEEEEEECSS-SEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTTTTCBTCCEEE
T ss_pred             CEEEEEEEecC-CEEEEcHHhcccCccccccCcccEEEEEccccccccCCCcceeeeeEEEEECCCCCCCCCCCCeEEEE
Confidence            35799999997 6999999999631100 002345677664221      1011222222222    2    13599999


Q ss_pred             EEccCC---CCccceEcCCCCC----CCCCCeEEEEecCC
Q 027022          184 KVDVEG---FELKPVVLGTSHD----LRVGQSCFAIGNPY  216 (229)
Q Consensus       184 ki~~~~---~~~~~l~lg~s~~----~~~G~~V~aiG~P~  216 (229)
                      |++.+-   ..+.|+.|.....    +..|..+++.|+..
T Consensus       134 ~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~  173 (289)
T 2bdy_A          134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN  173 (289)
T ss_dssp             EESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSC
T ss_pred             EECCccccCCcccccCCCCccccccccCCCCEEEEECCCc
Confidence            998542   2356666744322    56899999999754

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=96.64  E-value=0.0033  Score=54.81  Aligned_cols=88  Identities=14%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEE-e-EEEEE---Ec----------CCCcE
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYR-E-GKMVG---CD----------PAYDL  180 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~-~-A~vv~---~d----------~~~Dl  180 (229)
                      ...|.||++ -+|||++|.+.+.       ....|.+-..     +...+.. . .+++.   ++          ...||
T Consensus       104 ~CgGsLIs~-~~VLTAAHC~~~~-------~~~~v~~G~~~~~~~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDI  175 (333)
T 1elv_A          104 WAGGALINE-YWVLTAAHVVEGN-------REPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDI  175 (333)
T ss_dssp             EEEEEEEET-TEEEECHHHHTTC-------SSCCEECSCSBCC-------CEECEEEEEECTTSCCCSSCTTCCCCTTCC
T ss_pred             ceeEEEecC-CEEEehhheeCCC-------CCCeEEEeeeecccCccceeeeeccceEEECCCCcccccccccCCCcceE
Confidence            689999997 6999999999842       2223333211     1111111 0 22221   12          24699


Q ss_pred             EEEEEccCC---CCccceEcCCCC---CCCCCCeEEEEecCC
Q 027022          181 AVLKVDVEG---FELKPVVLGTSH---DLRVGQSCFAIGNPY  216 (229)
Q Consensus       181 AvLki~~~~---~~~~~l~lg~s~---~~~~G~~V~aiG~P~  216 (229)
                      ||||++.+-   ..+.|+-|....   .+..|+.+++.|+..
T Consensus       176 ALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~  217 (333)
T 1elv_A          176 ALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGR  217 (333)
T ss_dssp             EEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCC
T ss_pred             EEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcC
Confidence            999998542   235666675433   256799999999754

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=96.50  E-value=0.017  Score=48.53  Aligned_cols=84  Identities=10%  Similarity=0.088  Sum_probs=59.9

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEE-----EEEEcCCCcEEEEEEccCCCCccc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGK-----MVGCDPAYDLAVLKVDVEGFELKP  194 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~-----vv~~d~~~DlAvLki~~~~~~~~~  194 (229)
                      ..-=|+..++  |||||+|.++.      +...++|....|     .|...     -+..-+..||.++|..   .++||
T Consensus        30 ~~l~gigyG~--~iItn~HLf~r------nng~L~I~s~hG-----~f~v~nt~~lki~~i~g~DiiiIrmP---kDfpP   93 (241)
T 3mmg_A           30 ERLFGIGFGP--YIIANQHLFRR------NNGELTIKTMHG-----EFAVANSTQLQMKPVEGRDIIVIKMA---KDFPP   93 (241)
T ss_dssp             EEEEEEEETT--EEEECGGGGSS------TTCEEEEEETTE-----EEEEEEGGGSCEEECTBSSCEEEECC---TTSCC
T ss_pred             EEEEEEeECC--EEEEChhhccc------CCCeEEEEECCc-----eEEccCCCceeeEEeCCccEEEEeCC---CCCCC
Confidence            3445666665  99999999995      445788888664     23322     3567789999999994   35666


Q ss_pred             eEcCC-CCCCCCCCeEEEEecCCCCC
Q 027022          195 VVLGT-SHDLRVGQSCFAIGNPYGFE  219 (229)
Q Consensus       195 l~lg~-s~~~~~G~~V~aiG~P~G~~  219 (229)
                      .+--- ...++.||.|..+|.-+-..
T Consensus        94 f~~kl~FR~P~~~E~V~lVg~~fq~k  119 (241)
T 3mmg_A           94 FPQKLKFRQPTIKDRVCMVSTNFQQK  119 (241)
T ss_dssp             CCSCCCBCCCCTTCCEEEEEEEECSS
T ss_pred             cchhcccCCCCCCCeEEEEEeecccC
Confidence            55422 36799999999999877643

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=96.48  E-value=0.015  Score=47.98  Aligned_cols=96  Identities=14%  Similarity=0.005  Sum_probs=55.7

Q ss_pred             ceEEEEEEcCCcEEEEcccccccccc-CCCCcceEEEEEecCC------CCeeEEeEEEEEEcC--------CCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLAT-DTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP--------AYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~-~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~--------~~DlAvLk  184 (229)
                      ...+|.+|++ .+|||++|.+.+... .......+.|.+-..+      +.......+-+...+        ..|||||+
T Consensus        26 ~~CgGtLI~~-~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~  104 (259)
T 3rm2_H           26 LLCGASLISD-RWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMK  104 (259)
T ss_dssp             EEEEEEECSS-SEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEEEEEEEECTTCBTTTTCBTCCEEEE
T ss_pred             eEEEEEEEeC-CEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeEEEEEEECCCCCCCCCCCCcEEEEE
Confidence            4699999997 699999999952110 0012345666664221      111112122222221        34999999


Q ss_pred             EccCC---CCccceEcCCCC----CCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTSH----DLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~----~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....|+.|....    .+..|..+.+.|+..
T Consensus       105 L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~  143 (259)
T 3rm2_H          105 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN  143 (259)
T ss_dssp             ESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCC
T ss_pred             eCCceEcCCCcccccCCCccccccccCCCCEEEEeecCC
Confidence            98542   234566664322    146799999999864

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=96.34  E-value=0.01  Score=55.75  Aligned_cols=89  Identities=16%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC--------CCCeeEEeEEEEEEcC-------CCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA--------KGNGFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~--------~g~~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      ....|.||++ -+|||++|.+.+.     ....+.|.+...        ...  .+..+-+...+       ..|||||+
T Consensus       345 ~~CGGsLIs~-~~VLTAAHCv~~~-----~~~~~~V~~G~~~~~~~~~~~~~--~~~V~~ii~Hp~Y~~~~~~nDIALlk  416 (565)
T 2xrc_A          345 ITCGGIYIGG-CWILTAAHCLRAS-----KTHRYQIWTTVVDWIHPDLKRIV--IEYVDRIIFHENYNAGTYQNDIALIE  416 (565)
T ss_dssp             CCCCCEEEET-TEEEECHHHHTTC-----SSCCEEEEC-------------C--EEEEEEEEECTTCCTTTCTTCCEEEE
T ss_pred             eeeeEEEEeC-CEEEEChhhcccC-----CCcceEEEEEEeeccCCCCCccE--EEEEEEEEeCCCCCCCcccccceeee
Confidence            4688999997 6999999999842     234455544211        111  22223233332       35999999


Q ss_pred             EccCCC-------CccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          185 VDVEGF-------ELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~~-------~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      ++.+-.       ...|+-|... ..+..|+.+++.|+..
T Consensus       417 L~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~  456 (565)
T 2xrc_A          417 MKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGR  456 (565)
T ss_dssp             ECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC---
T ss_pred             eccccccccccccceeeeecCCcccccCCCCEEEEEeCcc
Confidence            985421       2345555432 3467899999999753

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=96.17  E-value=0.03  Score=53.22  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=56.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEcC-------CCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP-------AYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~-------~~DlAvLki  185 (229)
                      .....|.||++ -+|||++|.+.+..    ....+.|.+-.-+      +.. .+..+-+...+       ..||||||+
T Consensus       413 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~~~~~-~~~V~~ii~Hp~y~~~~~~nDIALlkL  486 (625)
T 2f83_A          413 RHLCGGSIIGN-QWILTAAHCFYGVE----SPKILRVYSGILNQSEIKEDTS-FFGVQEIIIHDQYKMAESGYDIALLKL  486 (625)
T ss_dssp             EEEEEEEECSS-SEEEECGGGGSSCC----CGGGEEEEESCSBGGGCCSSCC-CEEEEEEEECTTCCBTTTBCCCEEEEE
T ss_pred             cEEEEEEEECC-CEEEEcHHhCCCCC----CCceEEEEEEeccCCCCCCCce-EEeEEEEEECCccCcCCccccEEEEEE
Confidence            45689999997 69999999997421    2345666653210      111 22333333333       359999999


Q ss_pred             ccCC---CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          186 DVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                      +.+-   ..+.|+.|.... ....|+.+++.|+..
T Consensus       487 ~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~  521 (625)
T 2f83_A          487 ETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY  521 (625)
T ss_dssp             SSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC-
T ss_pred             CCcccCCCceeeeEcCCccCCccCCCEEEEEEecC
Confidence            8542   235666665432 346788899988753

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=95.74  E-value=0.035  Score=50.44  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=44.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEE---EcC------------CCcEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVG---CDP------------AYDLAVL  183 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~---~d~------------~~DlAvL  183 (229)
                      .....|.+|++ -||||++|++.+..    ....+.|.+-.. .+.+. ..+++.   ++.            ..|||||
T Consensus       241 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~v~~G~~-~~~~~-v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl  313 (497)
T 1rrk_A          241 HESCMGAVVSE-YFVLTAAHCFTVDD----KEHSIKVSVGGE-KRDLE-IEVVLFHPNYNINGKKEAGIPEFYDYDVALI  313 (497)
T ss_dssp             CEEEEEEECSS-SEEEECGGGCCTTC----CGGGEEEEETTC-SSCEE-EEEEEECTTCCTTTTGGGTCSSCCTTCCEEE
T ss_pred             CceeEEEEecC-CEEEECHHhCCCCC----CceEEEEEeCCc-cceee-eEEEEeCCCccccccccccccccCCCcEEEE
Confidence            35799999997 69999999997421    235677776321 23222 223321   222            3599999


Q ss_pred             EEccCC---CCccceEcC
Q 027022          184 KVDVEG---FELKPVVLG  198 (229)
Q Consensus       184 ki~~~~---~~~~~l~lg  198 (229)
                      +++.+-   ..+.|+.|.
T Consensus       314 ~L~~~v~~~~~v~picLp  331 (497)
T 1rrk_A          314 KLKNKLKYGQTIRPICLP  331 (497)
T ss_dssp             EESSCCCCBTTBCCCBCT
T ss_pred             EECCCCcCCCCeeeeeCC
Confidence            998542   134555554

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=95.23  E-value=0.025  Score=51.02  Aligned_cols=96  Identities=15%  Similarity=0.036  Sum_probs=55.2

Q ss_pred             cceEEEEEEcCCcEEEEcccccccccc-CCCCcceEEEEEecCC------CCeeEEeEEEEEEcC--------CCcEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLAT-DTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP--------AYDLAVL  183 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~-~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~--------~~DlAvL  183 (229)
                      .....|.||++ .+|||++|.+..... .......+.|.+-..+      +....+..+-+...+        ..|||||
T Consensus       190 ~~~CGGsLIs~-~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~~nDIALL  268 (424)
T 3nxp_A          190 ELLCGASLISD-RWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALM  268 (424)
T ss_dssp             EEEEEEEESSS-SEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEECEEEEEECTTCBTTTTSBTCCEEE
T ss_pred             CccceeEEEcC-CEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCceeEEEEEEEEeCCCCCCCCCCcCCeEEE
Confidence            35699999997 699999999952100 0003345677764211      111122222222222        3599999


Q ss_pred             EEccCC---CCccceEcCCCCC----CCCCCeEEEEecC
Q 027022          184 KVDVEG---FELKPVVLGTSHD----LRVGQSCFAIGNP  215 (229)
Q Consensus       184 ki~~~~---~~~~~l~lg~s~~----~~~G~~V~aiG~P  215 (229)
                      |++.+-   ..+.++-|.....    +..|..+++.|+.
T Consensus       269 kL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG  307 (424)
T 3nxp_A          269 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG  307 (424)
T ss_dssp             EESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESS
T ss_pred             EecCccccCCcccccCCCCcccccccccCCCeEEEEecC
Confidence            997542   2355666643221    4578999999975

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=95.22  E-value=0.059  Score=51.46  Aligned_cols=63  Identities=24%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcC----------------CCcEE
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP----------------AYDLA  181 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~----------------~~DlA  181 (229)
                      .....+|.+|++ -+|||++|.+.+..    ....+.|.+-.. .+  .+..+-+...+                ..|||
T Consensus       482 ~~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~V~~G~~-~~--~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIA  553 (741)
T 3hrz_D          482 GHESCMGAVVSE-YFVLTAAHCFTVDD----KEHSIKVSVGGE-KR--DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVA  553 (741)
T ss_dssp             ----EEEEECSS-SEEEECGGGCC---------CCEEEEETTC-SC--CEEEEEEEECTTCCTTTTGGGTCSCCCTTCCE
T ss_pred             CCCEEEEEEecC-CEEEEchhhccccC----CcceEEEEeCCC-ce--EEEEEEEEECCCCCcccccccccCCccCCcEE
Confidence            345789999997 69999999997421    345677776422 23  23333333222                35999


Q ss_pred             EEEEccC
Q 027022          182 VLKVDVE  188 (229)
Q Consensus       182 vLki~~~  188 (229)
                      |||++.+
T Consensus       554 LlkL~~p  560 (741)
T 3hrz_D          554 LIKLKNK  560 (741)
T ss_dssp             EEEESSC
T ss_pred             EEEECCc
Confidence            9999754

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=95.10  E-value=0.045  Score=49.97  Aligned_cols=73  Identities=21%  Similarity=0.173  Sum_probs=40.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeEEEEEE----cC------------CCc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREGKMVGC----DP------------AYD  179 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A~vv~~----d~------------~~D  179 (229)
                      .....|.+|++ -||||++|++.+..    ....+.|.+-..+   ++  .+..+-+..    +.            ..|
T Consensus       246 ~~~CgGsLIs~-~~VLTAAHC~~~~~----~~~~~~V~~G~~~~~~~~--~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nD  318 (509)
T 2odp_A          246 QETCRGALISD-QWVLTAAHCFRDGN----DHSLWRVNVGDPKSQWGK--EFLIEKAVISPGFDVFAKKNQGILEFYGDD  318 (509)
T ss_dssp             --CEEEEECSS-SEEEECGGGC------------CEEEECCTTCTTCE--EECEEEEEECTTCCTTTTGGGTCCCCCTTC
T ss_pred             CcEEEEEEEcC-CEEEEcHHHcCCCC----CcceEEEEeCCcccCCCc--eeeeEEEEECCCCccccccccccccccCCC
Confidence            35799999997 69999999998421    2345666664322   22  233333322    22            369


Q ss_pred             EEEEEEccCC---CCccceEcC
Q 027022          180 LAVLKVDVEG---FELKPVVLG  198 (229)
Q Consensus       180 lAvLki~~~~---~~~~~l~lg  198 (229)
                      ||||+++.+-   ..+.|+.|.
T Consensus       319 IALl~L~~~v~~~~~v~picLp  340 (509)
T 2odp_A          319 IALLKLAQKVKMSTHARPICLP  340 (509)
T ss_dssp             CEEEEESSCCCCBTTBCCCBCT
T ss_pred             eEEEEECCcccCCCCcccccCC
Confidence            9999998542   124555554

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=94.70  E-value=0.25  Score=41.08  Aligned_cols=81  Identities=10%  Similarity=0.093  Sum_probs=56.3

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeE-----EEEEEcCCCcEEEEEEccCCCCccce
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREG-----KMVGCDPAYDLAVLKVDVEGFELKPV  195 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A-----~vv~~d~~~DlAvLki~~~~~~~~~l  195 (229)
                      .-=|+..+.  ||+||+|..+.      +-..++|+...|     .|..     --+..=+..||.++|..   .++||.
T Consensus        39 ~l~gigyG~--~iItn~HLf~~------nnG~L~I~s~hG-----~f~v~nt~~lki~~i~g~DiiiIrmP---kDfpPf  102 (229)
T 1lvm_A           39 SLYGIGFGP--FIITNKHLFRR------NNGTLLVQSLHG-----VFKVKNTTTLQQHLIDGRDMIIIRMP---KDFPPF  102 (229)
T ss_dssp             EEEEEEETT--EEEECGGGGGC------CSSEEEEEETTE-----EEEESCGGGSEEEECTTSSCEEEECC---TTSCCC
T ss_pred             EEEEEeECC--EEEeChhhhcc------CCCcEEEEeCCC-----eEEeCCCCceeeEEeCCccEEEEeCC---CcCCCc
Confidence            345666665  99999999995      335677777553     2321     12455678899999995   346665


Q ss_pred             EcC-CCCCCCCCCeEEEEecCCC
Q 027022          196 VLG-TSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       196 ~lg-~s~~~~~G~~V~aiG~P~G  217 (229)
                      +-. ....++.||.|..+|.-|-
T Consensus       103 ~~~l~FR~P~~~e~V~lVg~~fq  125 (229)
T 1lvm_A          103 PQKLKFREPQREERICLVTTNFQ  125 (229)
T ss_dssp             CSCCCBCCCCTTCEEEEEEEECS
T ss_pred             ccccccCCCCCCCeEEEEEeEee
Confidence            432 2367999999999998765

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=87.61  E-value=3.7  Score=27.32  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=19.3

Q ss_pred             cceEEEEEEcCCcEEEEcccccc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVA  141 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~  141 (229)
                      .....|.+|++ -+|||++|.+.
T Consensus        23 ~~~CgGslIs~-~~VLTAAHC~~   44 (80)
T 2pka_A           23 SFQCGGVLVNP-KWVLTAAHCKN   44 (80)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC
T ss_pred             ceEEEEEEEcC-CEEEECHHHCC
Confidence            35689999997 69999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	2e-15
d2z9ia2	221	b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu	2e-15
d1lcya2	205	b.47.1.1 (A:6-210) Mitochondrial serine protease H	3e-14
d2h5ca1	198	b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobac	5e-13
d1l1ja_	228	b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic	5e-12
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	6e-12
d2bhga1	199	b.47.1.4 (A:7-205) 3C cysteine protease (picornain	3e-11
d2sgaa_	181	b.47.1.1 (A:) Protease A {Streptomyces griseus, st	3e-10
d1lvmb_	219	b.47.1.3 (B:) TEV protease (nucleat inclusion prot	3e-09
d2qaaa1	185	b.47.1.1 (A:16-242) Protease B {Streptomyces grise	3e-09
d1ky9a2	249	b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata	4e-09
d2qf3a1	210	b.47.1.1 (A:43-252) Stress sensor protease DegS, c	1e-07
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-04
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	0.003

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 71.1 bits (173), Expect = 2e-15
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 19/166 (11%)

Query: 70  ELQLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDK 129
           E   EE R ++   E  P+   +     +    +  S    V   + K     +G +  K
Sbjct: 2   EYSAEEIRKLKQKFEVPPTDKEL----YTHITDNARSPYNSVGTVFVKGSTLATGVLIGK 57

Query: 130 FGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREG-----KMVGCDP---AYDLA 181
              IVTNYHV  + A + S +        DA+ N F         + +   P     DLA
Sbjct: 58  -NTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLA 116

Query: 182 VLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT 221
           ++K+         G  ++P  +    D+  G     +G PY +   
Sbjct: 117 IIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAY 162

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 70.1 bits (170), Expect = 2e-15
 Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 22/148 (14%)

Query: 78  VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNY 137
           V Q+  +  PSVV ++                    +  +    GSG +    G I+TN 
Sbjct: 3   VEQVAAKVVPSVVMLE-------------------TDLGRQSEEGSGIILSAEGLILTNN 43

Query: 138 HVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL 197
           HV+A  A    G    K ++  + G            DP  D+AV++V        P+ L
Sbjct: 44  HVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGA--DPTSDIAVVRVQGVSGL-TPISL 100

Query: 198 GTSHDLRVGQSCFAIGNPYGFEDTLTTG 225
           G+S DLRVGQ   AIG+P G E T+TTG
Sbjct: 101 GSSSDLRVGQPVLAIGSPLGLEGTVTTG 128

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 24/149 (16%)

Query: 78  VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNY 137
           +  + ++T+P+VV I+ L   ++P                    GSGFV    G IVTN 
Sbjct: 12  IADVVEKTAPAVVYIEIL--DRHPFLGREV----------PISNGSGFVVAADGLIVTNA 59

Query: 138 HVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL 197
           HVV             +  +     +G   E  +   DP  D+A L++  +   L  + L
Sbjct: 60  HVV-----------ADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKE-PLPTLPL 107

Query: 198 GTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           G S D+R G+   A+G+P+  ++T+T+G+
Sbjct: 108 GRSADVRQGEFVVAMGSPFALQNTITSGI 136

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Length = 198

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

 Score = 63.4 bits (153), Expect = 5e-13
 Identities = 18/106 (16%), Positives = 23/106 (21%), Gaps = 14/106 (13%)

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
            G           VT  H     AT   G                          P  D 
Sbjct: 19  VGFSVTRGATKGFVTAGHCGTVNATARIGGAVVGT--------------FAARVFPGNDR 64

Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
           A + +      L  V  G+S     G +  A+G         T   
Sbjct: 65  AWVSLTSAQTLLPRVANGSSFVTVRGSTEAAVGAAVCRSGRTTGYQ 110

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.1 bits (147), Expect = 5e-12
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 25/160 (15%)

Query: 75  EDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVD-----------GEYAKVEGTGS 123
           E  +V + +  +P+VV I   ++ K  K++  +                G   +V   GS
Sbjct: 3   ESPIVNVVEACAPAVVKI---DVVKTVKTSFFDPYFEQFFKKWFGELPPGFERQVASLGS 59

Query: 124 GFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVL 183
           GF++D  G+I+TNYH          G     V+      +G   + + +G D   D+AV+
Sbjct: 60  GFIFDPEGYILTNYH-------VVGGADNITVT----MLDGSKYDAEYIGGDEELDIAVI 108

Query: 184 KVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLT 223
           K+     +   +  G S  +++G+   AIGNP GF+ T+T
Sbjct: 109 KIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVT 148

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 60.8 bits (146), Expect = 6e-12
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 115 YAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMV-- 172
           + K + + +G +  K   ++TN H+      D S +        D  GN     G+    
Sbjct: 50  FVKGQTSATGVLIGK-NTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVK 108

Query: 173 -----GCDPAYDLAVLKVDVE------GFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT 221
                      DLA++++  +      G ++ P  +GTS+DL+ G     IG P+  +  
Sbjct: 109 EILQEPFGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVN 168

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Length = 199

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP 176
           K              ++V  +    K             S +      F  E K+ G D 
Sbjct: 20  KTVAICCATGVFGTAYLVPRHLFAEKYDKIMLDGRAMTDSDYR----VFEFEIKVKGQDM 75

Query: 177 AYDLAVLKVDVEG-FELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGV 226
             D A++ +               +  ++ G     + N       + +G 
Sbjct: 76  LSDAALMVLHRGNKVRDITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGE 126

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 181

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 11/98 (11%)

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
            G     +   H +T  H     A+ + G              G        G     + 
Sbjct: 16  LGFNVSVNGVAHALTAGHCTNISASWSIGTR-----------TGTSFPNNDYGIIRHSNP 64

Query: 181 AVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
           A     V  +      + T+ +  VGQ+    G+  G 
Sbjct: 65  AAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGL 102

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Length = 219

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 8/105 (7%), Positives = 24/105 (22%), Gaps = 8/105 (7%)

Query: 120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYD 179
            T S +       I+TN H+               V      G    +    +       
Sbjct: 26  HTTSLYGIGFGPFIITNKHLFR------RNNGTLLVQSLH--GVFKVKNTTTLQQHLIDG 77

Query: 180 LAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTT 224
             ++ + +              + +  +    +   +  +   + 
Sbjct: 78  RDMIIIRMPKDFPPFPQKLKFREPQREERICLVTTNFQTKSMSSM 122

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 185

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 52.5 bits (125), Expect = 3e-09
 Identities = 10/102 (9%), Positives = 23/102 (22%), Gaps = 15/102 (14%)

Query: 121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
            G         + +T  H          G      +                   P  D 
Sbjct: 16  LGFNVRSGSTYYFLTAGHCTD-------GATTWWANSAR----TTVLGTTSGSSFPNNDY 64

Query: 181 AVLKVDVEGF----ELKPVVLGTSHDLRVGQSCFAIGNPYGF 218
            +++           +    + ++ +  VG +    G+  G 
Sbjct: 65  GIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGT 106

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 117 KVEGTGSGFVWD-KFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCD 175
           K    GSG + D   G++VTN HVV         L   +             + KMVG D
Sbjct: 73  KFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGR-----------KFDAKMVGKD 121

Query: 176 PAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ 229
           P  D+A++++      L  + +  S  LRVG    AIGNP+G  +T+T+G+   
Sbjct: 122 PRSDIALIQIQNPK-NLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSA 174

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Length = 210

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (113), Expect = 1e-07
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 80  QLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHV 139
              +  +P+VV++ +  L+ N  +             ++   GSG + D+ G+I+TN HV
Sbjct: 7   LAVRRAAPAVVNVYNRGLNTNSHNQL-----------EIRTLGSGVIMDQRGYIITNKHV 55

Query: 140 VAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDL 180
           +         L   +V      G+    +  ++  +    L
Sbjct: 56  INDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGL 96

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 111 VDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSL-FDAKGNGFYREG 169
           +  E        SG V  K   ++TN HVV     D   L     ++  D   NG +   
Sbjct: 25  IQVEAPTGTFIASGVVVGK-DTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAE 83

Query: 170 KMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDL------RVGQSCFAIGNPYGFEDTLT 223
           ++       DLA++K            +     +      +  Q+    G P        
Sbjct: 84  QITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPVATM 143

Query: 224 TGVT 227
               
Sbjct: 144 WESK 147

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 10/115 (8%)

Query: 120 GTGSGFVWDKFGHIVTNYHVV--AKLATDTSGLHRCKVSLFDAKGNGFYREGKMV----- 172
            + +G +      I+TN H V      + ++              NG     +       
Sbjct: 30  SSCTGTLIAP-NKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGY 88

Query: 173 --GCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTG 225
                  YD AV+K D                   G +    G P     +    
Sbjct: 89  INTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKV 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	99.94
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	99.93
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	99.92
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	99.89
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.88
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	99.58
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.4
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.23
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	99.2
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	99.16
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	98.89
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.65
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	98.52
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.41
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	97.46
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	97.35
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	97.29
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	97.27
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	97.27
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	97.25
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	97.23
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	97.21
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	97.19
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	97.17
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	97.15
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	97.14
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	97.14
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	97.1
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	97.09
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	97.08
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	97.06
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	97.03
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	97.02
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	97.01
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	96.99
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	96.98
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	96.94
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	96.93
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	96.93
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	96.92
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	96.9
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	96.89
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	96.83
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	96.78
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	96.77
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	96.75
d1elva1	259	Complement C1S protease, catalytic domain {Human (	96.73
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	96.62
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	96.57
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	96.54
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	96.48
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	96.44
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	96.42
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	96.4
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	96.39
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	96.37
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	96.27
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	96.26
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	96.24
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	96.21
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	96.2
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	96.06
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	96.05
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	95.99
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	95.98
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	95.94
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	95.92
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1mbma_	198	NSP4 proteinase {Equine arteritis virus, EAV [TaxI	84.21

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.5e-27  Score=199.15  Aligned_cols=140  Identities=34%  Similarity=0.506  Sum_probs=111.6

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccC--CCCC--cchhh-------------------------hhccccccccceEEEEEE
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKN--PKST--SSELM-------------------------LVDGEYAKVEGTGSGFVW  127 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~--~~~~--~~~~~-------------------------~~~~~~~~~~~~GSGfiI  127 (229)
                      +++++++++.||||.|.+......  +...  ...++                         ....+.....+.||||+|
T Consensus         4 s~a~~ve~v~PaVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GSG~iI   83 (249)
T d1ky9a2           4 SLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVII   83 (249)
T ss_dssp             CSHHHHHHHGGGEEEEEEEEEEEECCCCSSCCTTCCCC---------------------------CEEEEEEEEEEEEEE
T ss_pred             ChHHHHHHhCCceEEEEEEEEEeecCCcCcchhhhccccCCcccccccccccccccccccccccccccccccccccEEEE
Confidence            467999999999999987554321  0000  00000                         001122344578999999


Q ss_pred             cCC-cEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCC
Q 027022          128 DKF-GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVG  206 (229)
Q Consensus       128 ~~~-G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G  206 (229)
                      +++ ||||||+|||+       +++.+.|.+.+++    .+.|+++..|+.+|||+|+++.. .++++++|++++.+++|
T Consensus        84 ~~~~g~IlTn~HVv~-------~~~~~~v~~~~~~----~~~a~~~~~d~~~dlavl~i~~~-~~~~~~~l~~~~~~~~G  151 (249)
T d1ky9a2          84 DADKGYVVTNNHVVD-------NATVIKVQLSDGR----KFDAKMVGKDPRSDIALIQIQNP-KNLTAIKMADSDALRVG  151 (249)
T ss_dssp             ETTTTEEEEEHHHHT-------TEEEEEEEETTSC----EEEEEEEEEETTTTEEEEEESSC-CSCCCCCBCCGGGCCTT
T ss_pred             eccCceEEeeccccc-------cceeeeeeecccc----cccceeeEeccchhhceeeeccc-ccceEEEcCCcCcCCcC
Confidence            875 99999999999       8899999998755    88999999999999999999853 57999999999999999


Q ss_pred             CeEEEEecCCCCCCceeEeEEc
Q 027022          207 QSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       207 ~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      |+|++||||+|+..+++.|+++
T Consensus       152 ~~v~aiG~P~g~~~tvt~~~~~  173 (249)
T d1ky9a2         152 DYTVAIGNPFGLGETVTSGIVS  173 (249)
T ss_dssp             CEEEEEECTTSSSCEEEEEEEE
T ss_pred             CEEEEEecccccCCceeeccee
Confidence            9999999999999999999986

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2.4e-26  Score=192.43  Aligned_cols=142  Identities=32%  Similarity=0.541  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHhCCceEEEEeeeeccCCCCCcchh---hh------hccccccccceEEEEEEcCCcEEEEcccccccccc
Q 027022           75 EDRVVQLFQETSPSVVSIQDLELSKNPKSTSSEL---ML------VDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLAT  145 (229)
Q Consensus        75 ~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~  145 (229)
                      +..+.+++++++||||+|.+......+.. .+.+   +.      ..+......+.||||+|+++||||||+|||+    
T Consensus         3 ~~~~~~~v~~~~psVV~I~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~GSGfiI~~~G~IlTn~HVv~----   77 (228)
T d1l1ja_           3 ESPIVNVVEACAPAVVKIDVVKTVKTSFF-DPYFEQFFKKWFGELPPGFERQVASLGSGFIFDPEGYILTNYHVVG----   77 (228)
T ss_dssp             SCHHHHHHHHHGGGEEEEEEECC--CCCC-CHHHHHHHHHHCTTSCTTHHHHEEEEEEEEEEETTTEEEEEHHHHS----
T ss_pred             ccHHHHHHHHhCCcEEEEEEEEEEecCCC-CchhhHhhhhhccccCCccccccccceEEEEeecCceEEeeccccc----
Confidence            45788999999999999998765542211 1111   10      0122344567899999999999999999999    


Q ss_pred             CCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEe
Q 027022          146 DTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTG  225 (229)
Q Consensus       146 ~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~G  225 (229)
                         +.+.+.|.+.++.    .+.|++++.|+..|+|+|+++.....+++++|++++.+++||+|+++|||+|+..+.+.|
T Consensus        78 ---~~~~~~v~~~~~~----~~~a~v~~~~~~~dlall~v~~~~~~~~~l~l~~s~~~~~G~~V~aiG~P~g~~~~~~~~  150 (228)
T d1l1ja_          78 ---GADNITVTMLDGS----KYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVG  150 (228)
T ss_dssp             ---SCSSCEEECTTSC----EEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEEEEEECTTSSSCEEEEE
T ss_pred             ---ccccceEEeecce----eEeEEEeeecccccceeeEeecCCCCCceEEccCccccccCCcEEEEECCCCCCCceEee
Confidence               7788888887754    789999999999999999998666679999999999999999999999999999999888


Q ss_pred             EEc
Q 027022          226 VTF  228 (229)
Q Consensus       226 iVS  228 (229)
                      +++
T Consensus       151 ~~~  153 (228)
T d1l1ja_         151 VVS  153 (228)
T ss_dssp             EEE
T ss_pred             eee
Confidence            875

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=181.22  Aligned_cols=133  Identities=32%  Similarity=0.459  Sum_probs=112.0

Q ss_pred             ccchhHHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcc
Q 027022           72 QLEEDRVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLH  151 (229)
Q Consensus        72 ~~~~~~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~  151 (229)
                      ++....+.+++++++||||+|.+.....            ..+.....+.||||+|+++||||||+|||+       +++
T Consensus         6 ~~~~~~~~~~~e~~~~sVV~I~~~~~~~------------~~~~~~~~~~GSGf~i~~~G~IlT~~HVv~-------~~~   66 (205)
T d1lcya2           6 RSQYNFIADVVEKTAPAVVYIEILDRHP------------FLGREVPISNGSGFVVAADGLIVTNAHVVA-------DRR   66 (205)
T ss_dssp             HHHSCHHHHHHHHHGGGEEEEEEEEEET------------TTTEEEEEEEEEEEEEETTTEEEECHHHHT-------TCS
T ss_pred             cccccHHHHHHHHhcCcEEEEEEEEcCc------------CCCCcCCCcceEEEEEECCCeEEEechhhh-------hhh
Confidence            3456789999999999999999876442            011233457899999999999999999999       788


Q ss_pred             eEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          152 RCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       152 ~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      +++|.+.+++    .+.|++++.|+..|+|+|+++. ...+++++++++.+++.||+|+++|||++.......|.++
T Consensus        67 ~i~V~~~~g~----~~~a~vv~~d~~~dlall~~~~-~~~~~~l~l~~~~~~~~G~~v~~iG~P~~~~~~~~~g~~~  138 (205)
T d1lcya2          67 RVRVRLLSGD----TYEAVVTAVDPVADIATLRIQT-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVS  138 (205)
T ss_dssp             EEEEECTTSC----EEEEEEEEEETTTTEEEEECCC-SSCCCCCCBCCGGGCCTTCEEEECCCTTSSSSCCEEEEBC
T ss_pred             hccccccccc----cccceeeeeecceeeEEEEecC-CCCCcEEEccccccCCCCCEEEEEECCcccCceEeeeEEE
Confidence            9999887754    7899999999999999999984 3578999999888899999999999999988888877654

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2e-23  Score=171.87  Aligned_cols=128  Identities=30%  Similarity=0.473  Sum_probs=105.7

Q ss_pred             HHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEE
Q 027022           78 VVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSL  157 (229)
Q Consensus        78 ~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~  157 (229)
                      ....+++++||||+|........           ........+.||||+|+++||||||+|||+       ++++++|.+
T Consensus         5 ~~~~i~~~~~sVV~I~~~~~~~~-----------~~~~~~~~s~GSGfvi~~~G~IlTn~HVV~-------~~~~i~v~~   66 (210)
T d2qf3a1           5 YNLAVRRAAPAVVNVYNRGLNTN-----------SHNQLEIRTLGSGVIMDQRGYIITNKHVIN-------DADQIIVAL   66 (210)
T ss_dssp             CHHHHHHHGGGEEEEEEEEC---------------CCSCEEEEEEEEEECSTTCEEEEEHHHHT-------TCSEEEEEC
T ss_pred             HHHHHHHhCCceEEEEEEEeccC-----------CCCccccccceEEEEEECCceEEechhhcc-------ccccccccc
Confidence            45678999999999998654431           122234567899999999999999999999       888999988


Q ss_pred             ecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          158 FDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       158 ~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      .+++    .+.+++++.|+..|||+|+++.+ ...++..++.++.++.|++|+++|||++.......++++
T Consensus        67 ~~~~----~~~~~~~~~~~~~Dlall~~~~~-~~~~~~~~~~~~~~~~g~~v~~~G~p~~~~~~~~~~~~~  132 (210)
T d2qf3a1          67 QDGR----VFEALLVGSDSLTDLAVLKINAT-GGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS  132 (210)
T ss_dssp             TTSC----EEECEEEEEETTTTEEEEECCCS-SCCCCCCCCTTCCCCTTBEEEEEECGGGSSSEEEEEEEE
T ss_pred             cccc----ceeeEEeccccccchhheecccc-ccccccccccccccccceEEEEeccccccccccccccce
Confidence            7644    78999999999999999999854 466777888888999999999999999988888877764

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=3.9e-23  Score=170.98  Aligned_cols=128  Identities=39%  Similarity=0.542  Sum_probs=100.9

Q ss_pred             HHHHHHHHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCC--CCcceEE
Q 027022           77 RVVQLFQETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDT--SGLHRCK  154 (229)
Q Consensus        77 ~~~~~~~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~--~~~~~~~  154 (229)
                      ++++++++++||||+|+....                   +..+.||||+|+++||||||+|||++.....  ....++.
T Consensus         2 sv~~v~~~~~~svV~I~~~~~-------------------~~~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~   62 (221)
T d2z9ia2           2 SVEQVAAKVVPSVVMLETDLG-------------------RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTT   62 (221)
T ss_dssp             CHHHHHHHHGGGEEEEEEEC-----------------------CEEEEEECCTTSEEEECHHHHHHHHCCC------EEE
T ss_pred             CHHHHHHHhCCcEEEEEeccC-------------------CcCcceEEEEEECCCEEEEcHHHhhccccccccccCceEE
Confidence            467899999999999986432                   2456899999999999999999998432211  1235677


Q ss_pred             EEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCceeEeEEc
Q 027022          155 VSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTF  228 (229)
Q Consensus       155 V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVS  228 (229)
                      |.+.|  |+  .+.|++++.|+..|||||+++.. ...++..++++..+++|+.++++|||+|...++..|.++
T Consensus        63 v~~~d--g~--~~~a~vi~~d~~~DlAll~~~~~-~~~~~~~~~~~~~~~~g~~v~~~g~p~g~~~~~~~g~~~  131 (221)
T d2z9ia2          63 VTFSD--GR--TAPFTVVGADPTSDIAVVRVQGV-SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVS  131 (221)
T ss_dssp             EEETT--SC--EECCEEEEEETTTTEEEEECCSC-CSCCCCEECCGGGCCTTCEEEEEECGGGCTTEEEEEEEE
T ss_pred             EEcCC--ce--eeeeeeEeeccccceeeeeeccc-ccceeeccccccccccCceeeeeeccCCCccccccccee
Confidence            77766  44  78999999999999999999854 456666777888899999999999999999999888765

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=99.58  E-value=8.7e-16  Score=127.14  Aligned_cols=108  Identities=9%  Similarity=-0.047  Sum_probs=79.3

Q ss_pred             HHhCCceEEEEeeeeccCCCCCcchhhhhccccccccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC
Q 027022           83 QETSPSVVSIQDLELSKNPKSTSSELMLVDGEYAKVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG  162 (229)
Q Consensus        83 ~~~~psVV~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g  162 (229)
                      +.+...||.|....                     ....||||.|..+||||||+|||++      ....+.|.+.+  |
T Consensus        10 ~~i~~~v~~i~~~s---------------------~g~~gsg~gi~~~~~IiTN~HVv~~------~~~~~~i~~~~--G   60 (219)
T d1lvmb_          10 NPISSTICHLTNES---------------------DGHTTSLYGIGFGPFIITNKHLFRR------NNGTLLVQSLH--G   60 (219)
T ss_dssp             HHHHTTEEEEEEEE---------------------TTEEEEEEEEEETTEEEECGGGGSC------CSEEEEEEETT--E
T ss_pred             ccccccEEEEEEec---------------------CCCcEEEEEEEeCCEEEECcccccc------CCceEEEEEcC--C
Confidence            45567788887632                     3457899999888999999999983      22456676665  3


Q ss_pred             CeeEEe--EEEEEEcCCCcEEEEEEccCCCCccceEcCCCCCCCCCCeEEEEecCCCCCCc
Q 027022          163 NGFYRE--GKMVGCDPAYDLAVLKVDVEGFELKPVVLGTSHDLRVGQSCFAIGNPYGFEDT  221 (229)
Q Consensus       163 ~~~~~~--A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~s  221 (229)
                      ......  ..-+..++..|||+||++.  ...|.+++++++.+++||+|++||+|++....
T Consensus        61 ~~~~~~~~~i~i~~~~~~DLaiik~~~--~~~p~~~l~~~~~~~~Ge~V~aiG~p~~~~~~  119 (219)
T d1lvmb_          61 VFKVKNTTTLQQHLIDGRDMIIIRMPK--DFPPFPQKLKFREPQREERICLVTTNFQTKSM  119 (219)
T ss_dssp             EEEESCGGGSEEEECTTSSCEEEECCT--TSCCCCSCCCBCCCCTTCEEEEEEECCSCGGG
T ss_pred             cEeecceEEEEeeecCCccEEEEEcCC--CCCCcceecccCCCCcCCEEEEEEccCCCCce
Confidence            311111  1226778899999999974  34677899999999999999999999975433

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=8.4e-13  Score=109.17  Aligned_cols=99  Identities=23%  Similarity=0.327  Sum_probs=66.0

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEE---ecCCCCe----eEEeEEEEEEc---CCCcEEEEEEcc
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSL---FDAKGNG----FYREGKMVGCD---PAYDLAVLKVDV  187 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~---~~~~g~~----~~~~A~vv~~d---~~~DlAvLki~~  187 (229)
                      ..+.||||+|++ ++||||+|||.+...   ....+.+..   .+..+..    ..+.++.+..+   .+.|||||+++.
T Consensus        53 g~~~gTG~lI~~-~~ILTa~Hvv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~All~l~~  128 (242)
T d1agja_          53 GQTSATGVLIGK-NTVLTNRHIAKFANG---DPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKP  128 (242)
T ss_dssp             TTEEEEEEECSS-SEEEECHHHHGGGTT---CGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTTCTTSCCEEEEECC
T ss_pred             CCccEEEEEEeC-CEEEEcccEeccCCC---ceEEEEEeecceecccceeeeccceEEEEEEeeecCCCcCcEEEEEecc
Confidence            356799999997 699999999985421   112222211   1111110    02445555543   357999999974


Q ss_pred             CCC------CccceEcCCCCCCCCCCeEEEEecCCCCCC
Q 027022          188 EGF------ELKPVVLGTSHDLRVGQSCFAIGNPYGFED  220 (229)
Q Consensus       188 ~~~------~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~  220 (229)
                      +..      .++++.|++++.++.|+.|+++|||.+...
T Consensus       129 ~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~~~~~  167 (242)
T d1agja_         129 DQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV  167 (242)
T ss_dssp             CTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST
T ss_pred             ccccccccccCcceeecccccccCCcEEEEEEcCCCCcc
Confidence            321      378889999889999999999999998653

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.23  E-value=1.8e-11  Score=101.87  Aligned_cols=98  Identities=21%  Similarity=0.281  Sum_probs=66.5

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----C---CeeEEeEEEEEE---cCCCcEEEEEEc
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----G---NGFYREGKMVGC---DPAYDLAVLKVD  186 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g---~~~~~~A~vv~~---d~~~DlAvLki~  186 (229)
                      ..+.||||+|++ ++||||+|||.+...   ....+.+.+....     +   ....+.++.+..   +...|+|+|+++
T Consensus        46 g~~~GTGflI~~-~~ILTa~HVv~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~l~  121 (246)
T d1qtfa_          46 GSTLATGVLIGK-NTIVTNYHVAREAAK---NPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLK  121 (246)
T ss_dssp             TTEEEEEEEEET-TEEEECHHHHGGGTT---CGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCTTCTTSCCEEEEEC
T ss_pred             CCceEEEEEEeC-CeEEEchhecccCCc---ceEEEEEecCCcceeeeeeecCCCceEEEEEEEecCCcccCceEEEEec
Confidence            456799999997 799999999984321   2233333322110     0   001356666665   456799999997


Q ss_pred             cCCC------CccceEcCCCCCCCCCCeEEEEecCCCCC
Q 027022          187 VEGF------ELKPVVLGTSHDLRVGQSCFAIGNPYGFE  219 (229)
Q Consensus       187 ~~~~------~~~~l~lg~s~~~~~G~~V~aiG~P~G~~  219 (229)
                      ....      .++++.++++.++..|+.|+++|||.+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~  160 (246)
T d1qtfa_         122 PNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYS  160 (246)
T ss_dssp             CCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTS
T ss_pred             cccccccccccCceeeccccccccCCCEEEEEeCCCCCC
Confidence            5321      26677788888899999999999998754

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.20  E-value=1.4e-11  Score=98.13  Aligned_cols=87  Identities=14%  Similarity=0.037  Sum_probs=66.2

Q ss_pred             eEE-EEEEcCC--cEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCC----CCcc
Q 027022          121 TGS-GFVWDKF--GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEG----FELK  193 (229)
Q Consensus       121 ~GS-GfiI~~~--G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~----~~~~  193 (229)
                      ..| ||.+..+  +|||||+||++       +.+.+.+...+  ++  .+.+.+...++..|+||||++...    ..++
T Consensus        13 ~CT~Gf~v~~~~~~~ilTA~Hcv~-------~~~~~~~~~~~--~~--~~g~~~~~~~~~~D~All~~~~~~~~~~~~~~   81 (185)
T d2qaaa1          13 RCSLGFNVRSGSTYYFLTAGHCTD-------GATTWWANSAR--TT--VLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVG   81 (185)
T ss_dssp             EEECCEEEEETTEEEEEECHHHHT-------TCCEEESSTTS--CS--EEEEEEEEECSBSCEEEEEECCSSSCCCSEET
T ss_pred             cEeeeEeEEECCccEEEECCCccC-------CCCEEEEEcCC--Ce--EeeeEEeccCCCCCeEEEEeccCCcccccccC
Confidence            344 8877543  49999999999       66666554444  44  677888899999999999998532    1245


Q ss_pred             ceEcCCCCCCCCCCeEEEEecCCCC
Q 027022          194 PVVLGTSHDLRVGQSCFAIGNPYGF  218 (229)
Q Consensus       194 ~l~lg~s~~~~~G~~V~aiG~P~G~  218 (229)
                      ..++..+..+.+|++|+.+|+|.|.
T Consensus        82 ~~~v~~~~~~~~G~~v~~~G~~tg~  106 (185)
T d2qaaa1          82 GQDITSAANATVGMAVTRRGSTTGT  106 (185)
T ss_dssp             TEECCEECCCCTTCEEEEEETTTEE
T ss_pred             ceeccCCCcCCCCCEEEEccCCCCc
Confidence            5667667889999999999999874

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=99.16  E-value=9.5e-12  Score=99.93  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=76.2

Q ss_pred             cccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe---cCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCcc
Q 027022          117 KVEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF---DAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELK  193 (229)
Q Consensus       117 ~~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~---~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~  193 (229)
                      +....|+|+.|.. .++|||+|+++.      ..+.+.+...   ..+.+...+.++++..|...|||+|+++.. ..++
T Consensus        20 ~~~~~g~gl~v~g-~~~l~~~H~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~v~~~d~~~Dlall~l~~~-~~~~   91 (199)
T d2bhga1          20 KTVAICCATGVFG-TAYLVPRHLFAE------KYDKIMLDGRAMTDSDYRVFEFEIKVKGQDMLSDAALMVLHRG-NKVR   91 (199)
T ss_dssp             EEEEEEEEEEEEB-TEEEEEHHHHTS------CCSEEEETTEEECGGGEEEECCEECCSSSCEECSEEEEEESSS-CCBC
T ss_pred             eEEEEeEEEEEEC-CEEEECCcEeec------CCCEEEEeeeEEEEEeccceEEEEEEEecCCCccEEEEEcCCC-CcCC
Confidence            4567899999986 578899999984      3344433211   111122235678888899999999999743 2333


Q ss_pred             ce--EcCCCCCCCCCCeEEEEecCCCCCCceeEeEEcC
Q 027022          194 PV--VLGTSHDLRVGQSCFAIGNPYGFEDTLTTGVTFQ  229 (229)
Q Consensus       194 ~l--~lg~s~~~~~G~~V~aiG~P~G~~~svt~GiVSa  229 (229)
                      .+  .++++..++.|++|+++|+|++...+++.|++|+
T Consensus        92 ~~~~~~~~~~~~~~g~~v~~ig~p~~~~~~~~~~~~~~  129 (199)
T d2bhga1          92 DITKHFRDTARMKKGTPVVGVVNNADVGRLIFSGEALT  129 (199)
T ss_dssp             CCGGGBCSSCEECTTCEEEEEEEETTTEEEEEEEEESS
T ss_pred             cccccccccccccccceEEEEEcCCCCCceEEEEEEEE
Confidence            22  3677888999999999999999999999999874

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=1.3e-08  Score=81.46  Aligned_cols=99  Identities=21%  Similarity=0.197  Sum_probs=66.5

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCC----eeEEeEEEEEEcCCCcEEEEEEccCCC---
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGN----GFYREGKMVGCDPAYDLAVLKVDVEGF---  190 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~----~~~~~A~vv~~d~~~DlAvLki~~~~~---  190 (229)
                      ..+.||||+|++ .+||||+||+.+...   ....+.+.....++.    .....+.........|+|||+++....   
T Consensus        32 ~~~~cTG~lI~~-~~vLTAaHcv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~all~l~~~~~~~~  107 (216)
T d2o8la1          32 GTFIASGVVVGK-DTLLTNKHVVDATHG---DPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKH  107 (216)
T ss_dssp             EEEEEEEEEEET-TEEEECHHHHHTTTT---CGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEEECCCTTSCC
T ss_pred             CCEEEEEEEEeC-CEEEEeeeeeccCCC---ceEEEEEEecccccceeeeeeEEeeeeeccccCCceEEEEecccccccc
Confidence            356899999997 799999999996532   122333332222111    113457777888899999999975321   


Q ss_pred             ---CccceEcCCCCCCCCCCeEEEEecCCCCCC
Q 027022          191 ---ELKPVVLGTSHDLRVGQSCFAIGNPYGFED  220 (229)
Q Consensus       191 ---~~~~l~lg~s~~~~~G~~V~aiG~P~G~~~  220 (229)
                         ...+..+........|+.++.+|+|.+...
T Consensus       108 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~  140 (216)
T d2o8la1         108 IGEVVKPATMSNNAETQTNQNITVTGYPGDKPV  140 (216)
T ss_dssp             TTTSSCCCEECCCTTCCTTCEEEEEECCTTSST
T ss_pred             cccceeeeeccccccccCCceeEEEEccCCCce
Confidence               133344455667889999999999987543

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.65  E-value=9e-09  Score=81.73  Aligned_cols=84  Identities=19%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEcCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVLGT  199 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~lg~  199 (229)
                      +.|.++..+.++|||||+||++       ..+.+.+   .  ++  .+.+.+...|+..|+|||+++......+.+.+++
T Consensus        18 S~Gf~v~~~~~~~ilTA~Hc~~-------~~~~~~~---~--~~--~~~~~~~~~~p~~D~All~~~~~~~~~~~~~~~~   83 (198)
T d2h5ca1          18 SVGFSVTRGATKGFVTAGHCGT-------VNATARI---G--GA--VVGTFAARVFPGNDRAWVSLTSAQTLLPRVANGS   83 (198)
T ss_dssp             ECCEEEEETTEEEEEECGGGCC-------TTCEEEE---T--TE--EEEEEEEEECSBSCEEEEEECTTSEEEEEEEETT
T ss_pred             eeeEEEEECCCCEEEEChhcCC-------CCCeEEE---C--Ce--eeeeEEeeecCCCcEEEEEecCCCccCceeecCC
Confidence            3344445566679999999999       5565543   1  22  4455666779999999999986544455666655


Q ss_pred             CCC-------CCCCCeEEEEecCCC
Q 027022          200 SHD-------LRVGQSCFAIGNPYG  217 (229)
Q Consensus       200 s~~-------~~~G~~V~aiG~P~G  217 (229)
                      +..       ..+|+++...|++.+
T Consensus        84 ~~~~~~g~~~~~~G~~v~~~G~~~~  108 (198)
T d2h5ca1          84 SFVTVRGSTEAAVGAAVCRSGRTTG  108 (198)
T ss_dssp             EEEECCBCCCCCTTCEEEEEETTTE
T ss_pred             ccccccCceeeccCCcccccCcccc
Confidence            433       445555555555433

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=98.52  E-value=3.2e-08  Score=78.47  Aligned_cols=96  Identities=18%  Similarity=0.068  Sum_probs=56.8

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCC--eeEEeE-EEEE-------EcCCCcEEEEEEccC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGN--GFYREG-KMVG-------CDPAYDLAVLKVDVE  188 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~--~~~~~A-~vv~-------~d~~~DlAvLki~~~  188 (229)
                      .+.+||++|++ .|||||+|++.+..... ....+.+.....+..  ...... +++.       .+...|+|||+++.+
T Consensus        29 ~~~CsG~LI~~-~~VLTaaHCv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~l~~~  106 (215)
T d1p3ca_          29 GSSCTGTLIAP-NKILTNGHCVYNTASRS-YSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTN  106 (215)
T ss_dssp             SCEEEEEEEET-TEEEECHHHHEETTTTE-ECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCCGGGCCEEEEESSC
T ss_pred             CeEEEEEEEeC-CEEEECcceeccCCCCc-eeeeEEEeccccCCCCCceeEEEeEEEEecccccCCCccceEEEEEeccC
Confidence            46799999998 69999999998543211 011223332211111  001222 2221       345679999999754


Q ss_pred             CC-CccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          189 GF-ELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~~-~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .. ...++.+. ......|+.+++.|||.+
T Consensus       107 ~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~  135 (215)
T d1p3ca_         107 IGNTVGYRSIR-QVTNLTGTTIKISGYPGD  135 (215)
T ss_dssp             HHHHHCCCCBC-CCSCCTTCEEEEEECCHH
T ss_pred             CCccccccccc-cccccCCceeEEEcCCCC
Confidence            21 23444453 446788999999999975

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.41  E-value=1e-07  Score=74.87  Aligned_cols=76  Identities=17%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             EEEEcCC--cEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCC--------cc
Q 027022          124 GFVWDKF--GHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFE--------LK  193 (229)
Q Consensus       124 GfiI~~~--G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~--------~~  193 (229)
                      ||.+..+  +|||||+||+.       ..+.+.+...++.    .        .+..|+|+++++.....        .+
T Consensus        17 Gf~v~~~~~~~vlTA~Hc~~-------~~~~~~vg~~~g~----~--------~p~~D~Ali~~~~~~~~~~~~~~~~~~   77 (181)
T d2sgaa_          17 GFNVSVNGVAHALTAGHCTN-------ISASWSIGTRTGT----S--------FPNNDYGIIRHSNPAAADGRVYLYNGS   77 (181)
T ss_dssp             CEEEEETTEEEEEECHHHHT-------TCSEETTEEEEEE----E--------CSBSCEEEEEESCGGGCCCEEECSSSC
T ss_pred             eEeEEECCCCEEEEChhhCC-------CCCeEEEEeccCc----c--------CCccceEEEEecCcccccceeecCCCc
Confidence            7777554  48999999999       6666655554421    2        35679999999753211        23


Q ss_pred             ceEcCCCCCCCCCCeEEEEecCCCC
Q 027022          194 PVVLGTSHDLRVGQSCFAIGNPYGF  218 (229)
Q Consensus       194 ~l~lg~s~~~~~G~~V~aiG~P~G~  218 (229)
                      ..++.....+.+||.|+.+|+|.|.
T Consensus        78 ~~~~~~~~~~~~G~~v~~~G~~~g~  102 (181)
T d2sgaa_          78 YQDITTAGNAFVGQAVQRSGSTTGL  102 (181)
T ss_dssp             EEECCEECCCCTTCEEEEEETTTEE
T ss_pred             eeeecCCCcCCCCCEEEEeCCCCcc
Confidence            3444445678999999999999763

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=97.46  E-value=0.00018  Score=54.65  Aligned_cols=65  Identities=20%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             eEE-EEEEcCCc--EEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEccCCCCccceEc
Q 027022          121 TGS-GFVWDKFG--HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDVEGFELKPVVL  197 (229)
Q Consensus       121 ~GS-GfiI~~~G--~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~~~~~~~~l~l  197 (229)
                      ..| ||++.++|  ||||++|++.       +.+.+  ...++ ++  .+.......++..|+|+++++........+.+
T Consensus        13 ~Ct~Gf~v~~~g~~~ilTAaHCv~-------~~~~~--~~~~~-~~--~~~~~~~~~~~~~D~a~~~~~~~~~~~~~~~~   80 (187)
T d1hpga_          13 RCSAAFNVTKGGARYFVTAGHCTN-------ISANW--SASSG-GS--VVGVREGTSFPTNDYGIVRYTDGSSPAGTVDL   80 (187)
T ss_dssp             EEECCEEEEETTEEEEEECHHHHT-------TCSEE--ESSTT-CC--EEEEEEEEECSBSCEEEEEECSSCCCCSEEEC
T ss_pred             eEeeeEEEEcCCCcEEEEchhcCC-------CCCee--EECCC-CE--EEEEEEeecccCCchhheecccCcccceeEec
Confidence            355 89986554  9999999999       55554  33332 34  56778888899999999999855433333333

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0017  Score=51.01  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=58.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.||++ .+|||++|.+.+..    +.....|......     .....+....+...+       ..|+|||+++
T Consensus        25 ~~~C~GtLIs~-~~VLTAAhCv~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~~~~~~diAll~l~   99 (240)
T d1mzaa_          25 HHVCGGVLIDP-QWVLTAAHCQYRFT----KGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQ   99 (240)
T ss_dssp             EEEEEEEEEET-TEEEECGGGSCTTC----SCSCEEEEESCSBSSSCCTTCEEEEEEEEEECCCSSCSSSSSCCEEEEES
T ss_pred             eEEEEEEEEeC-CEEEECeEcccccC----CcceeEEEEeecccCcCCccceeEeeeeeeeeccccccccCcceEEEeec
Confidence            34699999998 69999999998543    2334555543211     111122333333322       5699999997


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.|...............|....
T Consensus       100 ~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~  133 (240)
T d1mzaa_         100 TAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGAT  133 (240)
T ss_dssp             SCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCS
T ss_pred             ceeeeeeccccccccccccccceeeEEEEEeccc
Confidence            542   2356777766666777777777776543

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=97.35  E-value=0.0017  Score=50.51  Aligned_cols=89  Identities=16%  Similarity=0.250  Sum_probs=56.1

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---C-CeeEEeEEEEEE---cC---CCcEEEEEEccCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---G-NGFYREGKMVGC---DP---AYDLAVLKVDVEG  189 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g-~~~~~~A~vv~~---d~---~~DlAvLki~~~~  189 (229)
                      ...+|.+|++ .+|||++|.+.       +.....+...+..   + .......+.+..   ++   ..|||||+++.+-
T Consensus        23 ~~C~GtLIs~-~~VLTAAhCv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diALl~l~~~v   94 (222)
T d1hj8a_          23 HFCGGSLVNE-NWVVSAAHCYK-------SRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPA   94 (222)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------SSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCC
T ss_pred             EEEEEEEeeC-CEEEeCceecc-------cccCcceeeccccccCCccccccceEEEecccccccccCCcEEEEecccce
Confidence            4799999998 69999999998       3344333322111   1 111112223222   11   4699999997542


Q ss_pred             ---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          190 ---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 ---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                         ....++.|. ......|..+...|+-..
T Consensus        95 ~~~~~~~picl~-~~~~~~~~~~~~~g~~~~  124 (222)
T d1hj8a_          95 TLNTYVQPVALP-TSCAPAGTMCTVSGWGNT  124 (222)
T ss_dssp             CCSSSCCCCBCC-SSCCCTTCEEEEEESSCC
T ss_pred             eeeceeEEEECC-CcCCCCCceEEEEecccc
Confidence               346677774 457788999999988654

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=97.29  E-value=0.0025  Score=49.55  Aligned_cols=91  Identities=21%  Similarity=0.257  Sum_probs=56.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc---------CCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD---------PAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d---------~~~DlAvLk  184 (229)
                      ....+|.+|++ .+|||++|.+.       +.+...+.+...     ++.........+...         .+.|||||+
T Consensus        27 ~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diall~   98 (236)
T d1elta_          27 YHTCGGSLIRQ-GWVMTAAHCVD-------SARTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLR   98 (236)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHS-------SCCCEEEEESCSBTTSCCSCCEEECEEEEEECTTCCTTCGGGCCCCEEEE
T ss_pred             eeEEEEEEEeC-CEEEECeeecc-------ccccceeeccceeeecccCCceeeeeeEEEEeeeecccccccCceEEEee
Confidence            34699999997 79999999998       445555554321     111112222232221         135999999


Q ss_pred             EccCC---CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....++.|..+ .....++.+++.|+...
T Consensus        99 l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~  135 (236)
T d1elta_          99 LNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKT  135 (236)
T ss_dssp             ESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCS
T ss_pred             ccCcceeecccceeecCchhcccCCCceEEEeccccc
Confidence            97542   12445666544 34667888999887654

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0028  Score=49.14  Aligned_cols=87  Identities=14%  Similarity=0.030  Sum_probs=54.6

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc-------CCCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD-------PAYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d-------~~~DlAvLki~~  187 (229)
                      ...+|.||++ .+|||++|.+.       +...  |.+...     +.........-+...       ...|+|||+++.
T Consensus        24 ~~C~GtLIs~-~~VLTaAhCv~-------~~~~--v~~g~~~~~~~~~~~~~~~~~~~~~~p~y~~~~~~~diAll~l~~   93 (221)
T d1lo6a_          24 LLCGGVLIHP-LWVLTAAHCKK-------PNLQ--VFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLAR   93 (221)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------TTCE--EEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             EEEEEEEEeC-CEEEECeeccc-------cccc--eeeceeeecccCccceeeeccccccCCCcccccccceeEEeeccc
Confidence            4699999998 69999999998       3333  333211     111112222222222       356999999975


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ..   ....++.+. ......++.+++.|+...
T Consensus        94 ~~~~~~~v~pi~l~-~~~~~~~~~~~~~Gwg~~  125 (221)
T d1lo6a_          94 PAKLSELIQPLPLE-RDCSANTTSCHILGWGKT  125 (221)
T ss_dssp             CCCCBTTBCCCCBC-CCTTCCCCEEEEEESSCC
T ss_pred             ccceeeeEEecccc-ccCCcccceEEEEecccc
Confidence            42   235677774 456788999999998643

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=97.27  E-value=0.0019  Score=50.16  Aligned_cols=93  Identities=17%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--CCeeEEeEEEEEE-----cCCCcEEEEEEccCC--
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--GNGFYREGKMVGC-----DPAYDLAVLKVDVEG--  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g~~~~~~A~vv~~-----d~~~DlAvLki~~~~--  189 (229)
                      ....+|.+|++ -+|||++|.+.+.     +.....+......  ..........+..     ....|||||+++.+-  
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhC~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~~~~DiAll~L~~~v~~   96 (224)
T d1gdna_          23 GPWCGGSLLNA-NTVLTAAHCVSGY-----AQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPS   96 (224)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHTTS-----CGGGEEEEESCSBSSSSSEEEEEEEEEECTTCBTTBSCCEEEEESSCCCC
T ss_pred             CEEEEEEEEeC-CEEEECcccceec-----cccccceeeccccccCCcceEEEEEEEeeeccccccceeEEEeecccccc
Confidence            44699999998 6999999998853     2233344433221  1111222333322     235699999997542  


Q ss_pred             -CCccceEcC-CCCCCCCCCeEEEEecCCC
Q 027022          190 -FELKPVVLG-TSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 -~~~~~l~lg-~s~~~~~G~~V~aiG~P~G  217 (229)
                       ....++.+- .......|+.+...|+...
T Consensus        97 ~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~  126 (224)
T d1gdna_          97 GGNIGYARLAASGSDPVAGSSATVAGWGAT  126 (224)
T ss_dssp             BTTBCCCCBCCTTCCCCTTCEEEEEESCCS
T ss_pred             ccccceeeccccccccccceeeeeeccCcc
Confidence             122233332 3344677999999998754

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.0026  Score=49.48  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC---CCeeEEeEEEEEEcC-------CCcEEEEEEccC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK---GNGFYREGKMVGCDP-------AYDLAVLKVDVE  188 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~---g~~~~~~A~vv~~d~-------~~DlAvLki~~~  188 (229)
                      ....+|.+|++ -+|||++|.+.+       .....+.....+   +.........+...+       ..|||||+++.+
T Consensus        22 ~~~C~GtLIs~-~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~~~~~~~diAll~L~~~   93 (223)
T d1j16a_          22 YHFCGGSLIND-QWVVSAAHCYKS-------RIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSP   93 (223)
T ss_dssp             SEEEEEEEEET-TEEEECGGGCCS-------SCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTTTTBTCCEEEEESSC
T ss_pred             CEEEEEEEEcC-CEEEeCHHHCCC-------cCCceeeeeeeccccccceeeeeeeEEecCCCCccccceeEEEEEecCc
Confidence            34799999998 699999999983       233222222111   111122333332222       359999999753


Q ss_pred             C---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      -   ....++.|. ......|+.+...|+...
T Consensus        94 v~~~~~~~picL~-~~~~~~~~~~~~~g~g~~  124 (223)
T d1j16a_          94 VKLNARVATVALP-SSCAPAGTQCLISGWGNT  124 (223)
T ss_dssp             CCCBTTBCCCBCC-SSCCCTTCEEEEEESSCC
T ss_pred             cccceeEEEEecC-CcCCCCCCEEEEEeeeee
Confidence            2   246677785 456789999999999764

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=97.23  E-value=0.00086  Score=52.45  Aligned_cols=90  Identities=20%  Similarity=0.119  Sum_probs=56.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEe-EEEEEE------cCCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYRE-GKMVGC------DPAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~-A~vv~~------d~~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       +.....+.+....     +....+. .+++..      ..+.|||||+++
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~~~~g~~~~~~~~~~~~~~~v~~i~~~~~y~~~~~~~diAll~l~   94 (226)
T d1azza_          23 MYFCGGSLISP-EWILTAAHCMD-------GAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLP   94 (226)
T ss_dssp             TEEEEEEEEET-TEEEECHHHHT-------TCSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCBTTTTBSCCEEEECS
T ss_pred             cEEEEEEEeeC-CEEEEChhhcc-------CCcceEEEeccceeccCCcceEEEEeeeeeeccccccccccchhhhhhcC
Confidence            45699999998 69999999998       4444444442111     1111112 222221      125799999997


Q ss_pred             cCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.+. ......++...+.|+...
T Consensus        95 ~~~~~~~~~~pi~l~-~~~~~~~~~~~~~g~g~~  127 (226)
T d1azza_          95 VPVTLTAAIATVGLP-STDVGVGTVVTPTGWGLP  127 (226)
T ss_dssp             SCCCCCSSSCCCBCC-SSCCCTTCEEEEEESSCS
T ss_pred             Cccceeecccccccc-ccccccccceeeeccccc
Confidence            542   235566664 456788899999988665

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=97.21  E-value=0.00074  Score=53.02  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC----Ce-eEEeEEEEE------EcCCCcEEEEEEccC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG----NG-FYREGKMVG------CDPAYDLAVLKVDVE  188 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g----~~-~~~~A~vv~------~d~~~DlAvLki~~~  188 (229)
                      ...+|.||++ -+|||++|.+.       +.....+.+...+.    .. .......+.      .....||||||++.+
T Consensus        24 ~~C~G~LIs~-~~VLTaAhCv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiaLl~L~~~   95 (234)
T d1op0a_          24 FFCGGTLINP-EWVVTAAHCDS-------TDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKP   95 (234)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------SSCEEEESCSCSSSCCTTCEEECEEEEEECTTCCTTCTTSSCCEEEEESSC
T ss_pred             EEEEEEEEcC-CEEEECceeCC-------CCCccccceeeccccCCcceeeeeeeeccccccccccccchhhhhhhcCCc
Confidence            4699999997 59999999998       34444443332210    00 001111111      123569999999854


Q ss_pred             C---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      -   ..+.|+.|.+ .....|+.+...|.-..
T Consensus        96 v~~~~~i~picl~~-~~~~~~~~~~~~g~~~~  126 (234)
T d1op0a_          96 ISNSKHIAPLSLPS-SPPSVGSVCRIMGWGSI  126 (234)
T ss_dssp             CCCBTTBCCCCCCS-SCCCTTCEEEEEESSCS
T ss_pred             eeccceeecccccc-cCcccceEEEEeeeccc
Confidence            2   2356677744 45778999999997543

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=0.0022  Score=49.94  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec------CCCCeeEEeEEEEEEc------CCCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD------AKGNGFYREGKMVGCD------PAYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~------~~g~~~~~~A~vv~~d------~~~DlAvLki~~  187 (229)
                      ...+|.||++ .+|||++|.+.       +..  .|.+..      .+........+++..+      .+.|||||+++.
T Consensus        28 ~~C~GtLI~~-~~VLTaAhC~~-------~~~--~v~~G~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~diall~l~~   97 (227)
T d1fi8a_          28 KKCGGFLIRE-DFVLTAAHCSG-------SKI--QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKS   97 (227)
T ss_dssp             CEEEEEEEET-TEEEECGGGCC-------SEE--EEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBSCCEEEEESS
T ss_pred             eEEEEEEEeC-CEEEEeccccc-------ccc--eeeeeecccccCCCCceEEEEEEEEecccccCccccchhhhhhccC
Confidence            4689999997 69999999998       333  344321      1111112223333222      246999999985


Q ss_pred             CC---CCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....++.+.. ...+..|+.++..|+...
T Consensus        98 ~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~  131 (227)
T d1fi8a_          98 KAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKL  131 (227)
T ss_dssp             CCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBS
T ss_pred             ceeeeeeEEEEEecccCcccCCCCEEEEEeeccc
Confidence            42   2344554433 345788999999997653

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0052  Score=47.27  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=56.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC------CCCeeEEeEEEEEE------cCCCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA------KGNGFYREGKMVGC------DPAYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~------~g~~~~~~A~vv~~------d~~~DlAvLki~~  187 (229)
                      ...+|.+|++ .+|||++|.+...     ..+.+.|.+.+.      .+.. .....+...      ....|||||+++.
T Consensus        27 ~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~diAll~L~~   99 (221)
T d1fuja_          27 HFCGGTLIHP-SFVLTAAHCLRDI-----PQRLVNVVLGAHNVRTQEPTQQ-HFSVAQVFLNNYDAENKLNDILLIQLSS   99 (221)
T ss_dssp             CCEEEEEEET-TEEEECGGGGSSS-----CGGGEEEEESCSBTTSCCTTCE-EEEEEEEEECCCBTTTTBCCCEEEEESS
T ss_pred             EEEEEEEEeC-CEEEEeeEEEeec-----CCccceeeeeccccccccccce-eeeeeeEEEeeecCCCCccEEEEEEccc
Confidence            4699999998 5999999999854     345566665321      1111 112222221      1245999999975


Q ss_pred             CC---CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....|+.|... ..+..|...++.|....
T Consensus       100 ~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~  133 (221)
T d1fuja_         100 PANLSASVATVQLPQQDQPVPHGTQCLAMGWGRV  133 (221)
T ss_dssp             CCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBS
T ss_pred             cccccceEEEEEecccccccCCCceEEEeccccc
Confidence            42   23445556544 34678899999998754

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0071  Score=47.29  Aligned_cols=91  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec----CCCC---eeEEe-EEEEEEcCCCcEEEEEEccCC--
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD----AKGN---GFYRE-GKMVGCDPAYDLAVLKVDVEG--  189 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~----~~g~---~~~~~-A~vv~~d~~~DlAvLki~~~~--  189 (229)
                      -..+|.+|++ .+|||++|.+.+.     +.+.+.|.+..    ..+.   ...+. -.........||||||++.+-  
T Consensus        23 ~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIAll~L~~~v~~   96 (234)
T d1si5h_          23 HICGGSLIKE-SWVLTARQCFPSR-----DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVL   96 (234)
T ss_dssp             EEEEEEEEET-TEEEEEGGGCSSS-----CGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSSTTCEEEEEESSCCCC
T ss_pred             EEEEEEEEeC-CEEEECcCccCCC-----CCccceEEEEeecccccccceeEEEEeeccccCCCcccceEEEeeccCccc
Confidence            3699999997 6999999999854     45667776631    1111   11122 222233346699999997531  


Q ss_pred             -CCccceEcCCCC-CCCCCCeEEEEecCC
Q 027022          190 -FELKPVVLGTSH-DLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 -~~~~~l~lg~s~-~~~~G~~V~aiG~P~  216 (229)
                       ....++.|.... ....+..+...|+-.
T Consensus        97 ~~~v~picl~~~~~~~~~~~~~~~~g~~~  125 (234)
T d1si5h_          97 DDFVSTIDLPNYGSTIPEKTSCSVYGWGY  125 (234)
T ss_dssp             SSSCCCCBCCCTTCCCCTTCEEEEEESSC
T ss_pred             cccccccccccccccCCcceeEEEecccc
Confidence             234566665443 344566777777643

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0016  Score=51.72  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec--CCCCeeEEe-EEEEEEc------------CCCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD--AKGNGFYRE-GKMVGCD------------PAYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~--~~g~~~~~~-A~vv~~d------------~~~DlAvLk  184 (229)
                      ...+|.+|++ .+|||++|.+.+.....  ..........  .......+. .++....            ...|||||+
T Consensus        24 ~~C~GtLIs~-~~VLTaAhCv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~  100 (255)
T d1z8ga1          24 HLCGGSLLSG-DWVLTAAHCFPERNRVL--SRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVH  100 (255)
T ss_dssp             EEEEEEESSS-SEEEECGGGCCGGGCCG--GGEEEEESCSBTTCTTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEE
T ss_pred             EEEEEEEEeC-CEEEECceecCCCCCcc--ceeeEeeeeecccCCccEEEEEEEEEEEeeeccccccccCCccccEEEEe
Confidence            4699999997 69999999998543211  1111111110  000000111 2222221            236999999


Q ss_pred             EccCC---CCccceEcCCC-CCCCCCCeEEEEecC
Q 027022          185 VDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNP  215 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P  215 (229)
                      ++.+-   ....++.|... .....+..+...|..
T Consensus       101 L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~  135 (255)
T d1z8ga1         101 LSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWG  135 (255)
T ss_dssp             ESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESS
T ss_pred             cCCccccCcccccceecccCcccCCCcEEEeeccc
Confidence            97531   23444444333 245568888888864

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0041  Score=48.46  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEe-EEEEEE------cCCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYRE-GKMVGC------DPAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~-A~vv~~------d~~~DlAvLki~  186 (229)
                      ....+|.+|++ .+|||++|.+.       +.....|.+...+     .....+. .+++..      ....||||||++
T Consensus        24 ~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~DiAli~L~   95 (240)
T d1autc_          24 KLACGAVLIHP-SWVLTAAHCMD-------ESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLA   95 (240)
T ss_dssp             CEEEEEEEEET-TEEEECGGGSS-------SCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEES
T ss_pred             CEEEEEEEEeC-CEEEECceecc-------CcccceeeccccccccccccceeeeeeccccceeeeccccccceeEEEeC
Confidence            34699999997 79999999998       5556666663211     1111122 233321      224599999997


Q ss_pred             cCC---CCccceEcCCC-----CCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGTS-----HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~s-----~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....|+-|..+     .....|....+.|+.+.
T Consensus        96 ~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~  134 (240)
T d1autc_          96 QPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYH  134 (240)
T ss_dssp             SCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCC
T ss_pred             CcccCCcccccceeccCcccccccccCCCeEEEEeeccc
Confidence            541   22445555332     23678888999987665

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=97.10  E-value=0.00042  Score=54.07  Aligned_cols=92  Identities=12%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeE-EeEEEEEE---cCCCcEEEEEEccCCCCccce
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFY-REGKMVGC---DPAYDLAVLKVDVEGFELKPV  195 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~-~~A~vv~~---d~~~DlAvLki~~~~~~~~~l  195 (229)
                      +..||+.|.+ .++|+|+|+.+.        +.  +.+.   ++.+. .++..+ .   +.+.||++|+++.. .+++.+
T Consensus        23 G~~tgLgI~~-~~~lvp~H~~~~--------~~--i~i~---~~~~~i~d~~~l-~~~~~~~~Dl~lvklp~~-~~frdi   86 (180)
T d1cqqa_          23 GKFTGLGVYD-RFVVVPTHADPG--------KE--IQVD---GITTKVIDSYDL-YNKNGIKLEITVLKLDRN-EKFRDI   86 (180)
T ss_dssp             EEEEEEEEEB-TEEEEEGGGCCC--------SE--EEET---TEEEEEEEEEEE-ECTTSCEEEEEEEEECSS-CCBCCG
T ss_pred             eEEEEEEEEC-CEEEEecccCCC--------CE--EEEC---CEEEEeeceEEE-EccCCCceEEEEEEcCCC-cccCcc
Confidence            4678998875 699999998872        22  3332   22212 122222 3   34579999999743 345554


Q ss_pred             E-cCCCCCCCCCCeEEEEecCCCCCCceeEeEE
Q 027022          196 V-LGTSHDLRVGQSCFAIGNPYGFEDTLTTGVT  227 (229)
Q Consensus       196 ~-lg~s~~~~~G~~V~aiG~P~G~~~svt~GiV  227 (229)
                      + +-.+.....++.+.+++.+.+.......|.+
T Consensus        87 rk~~~~~~~~~~~~~l~i~~~~~~~~~~~vg~~  119 (180)
T d1cqqa_          87 RRYIPNNEDDYPNCNLALLANQPEPTIINVGDV  119 (180)
T ss_dssp             GGGSCSSCCCEEEEEEEECTTSSSCEEEEEEEE
T ss_pred             hhhhccCCCCCCCEEEEEEcCCCCcEEEEeeee
Confidence            3 2233455677888889988765555555544

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.09  E-value=0.0024  Score=49.83  Aligned_cols=90  Identities=11%  Similarity=0.034  Sum_probs=55.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC---CCCeeEEeEEEEEEcC-----CCcEEEEEEccCCCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA---KGNGFYREGKMVGCDP-----AYDLAVLKVDVEGFE  191 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~---~g~~~~~~A~vv~~d~-----~~DlAvLki~~~~~~  191 (229)
                      ...+|.||++ -+|||++|.+.+..    ....+.|.+...   ++....+.-..+...+     +.||||||++.+ ..
T Consensus        20 ~~C~GtLIs~-~~VLTaAhCv~~~~----~~~~~~v~~g~~~~~~~~~~~i~~~~i~~~~~~~~~~~DIAllkL~~~-~~   93 (223)
T d1os8a_          20 MGCGGALYAQ-DIVLTAAHCVSGSG----NNTSITATGGVVDLQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQP-IN   93 (223)
T ss_dssp             TTEEEEEEET-TEEEECGGGSSCSE----ECCCCEEEESCSBTTCTTCEEEEEEEEEECTTCSSSSCCCEEEEESSC-CC
T ss_pred             ccEeEEEEeC-CEEEEChhhccCCC----Ccceeeeccccccccccccccceeeeeeecccccccceeeeeeeeeee-ee
Confidence            3589999998 59999999997432    223344444321   1222223333333332     469999999853 45


Q ss_pred             ccceEcCCCCCCCCCCeEEEEecCC
Q 027022          192 LKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       192 ~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      ++...+ ....+..++.+...|.-.
T Consensus        94 ~~~~~~-~~~~~~~~~~~~~~~~~~  117 (223)
T d1os8a_          94 QPTLKI-ATTTAYNQGTFTVAGWGA  117 (223)
T ss_dssp             SCCCEE-CCSSTTSSSEEEEEESSC
T ss_pred             cccccc-cccccccccceEEeeccc
Confidence            666655 344677888888887654

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.0041  Score=48.51  Aligned_cols=87  Identities=22%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE------------------cC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC------------------DP  176 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~------------------d~  176 (229)
                      ...+|.||++ -+|||++|.+.       +...  |.+...+     .....+..+-...                  +.
T Consensus        24 ~~C~GtLIs~-~~VLTaAhCv~-------~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (237)
T d1ao5a_          24 HICGGVLLDR-NWVLTAAHCYV-------DQYE--VWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADF   93 (237)
T ss_dssp             EEEEEEEEET-TEEEECTTCCC-------SSCE--EEESCCBSSSCCSSCEECCEEEEEECTTSCGGGGGCSSCCTTCCC
T ss_pred             EEEEEEEeeC-CEEEECHHHcC-------CCce--EEEEeccccccccccEEEEEEEEeecccccccccccccccCcccc
Confidence            4699999998 69999999998       3333  3332110     0000111121111                  12


Q ss_pred             CCcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          177 AYDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       177 ~~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      ..||||||++.+-   ....++.+. ......++..++.|+...
T Consensus        94 ~~DiAll~L~~~i~~~~~~~~i~lp-~~~~~~~~~~~~~g~~~~  136 (237)
T d1ao5a_          94 SDDLMLLRLSKPADITDVVKPIALP-TKEPKPGSKCLASGWGSI  136 (237)
T ss_dssp             TTCCEEEEESSCCCCCSSSCCCCCC-CSCCCTTCEEEEEESCCS
T ss_pred             ccceeeeccCcccccccccceeccC-CCCCcccceEEEeeeeee
Confidence            4699999998541   235555553 446778889999998643

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0056  Score=47.41  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC---CeeEEeEEEEEE----------cCCCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG---NGFYREGKMVGC----------DPAYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g---~~~~~~A~vv~~----------d~~~DlAvLki  185 (229)
                      ....+|.+|++ -+|||++|.+.       +.....+.......   .......+-+..          +...|||||++
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhC~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIAll~L   94 (225)
T d1npma_          23 RLICGGVLVGD-RWVLTAAHCKK-------QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRL   94 (225)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------SSCEEEESCSBTTC--CCCEEECEEEEEECTTCCSSCTTCCTTCCEEEEE
T ss_pred             cEEEEEEEEcC-CEEEEchHhCc-------cccccccccccccccCCCcceeeeeeeEEEEeeeccCcccchhhhhhhhc
Confidence            34799999997 69999999998       33333222221110   000112222222          12469999999


Q ss_pred             ccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          186 DVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +.+.   ....++.+. ......++.+++.|+...
T Consensus        95 ~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~g~g~~  128 (225)
T d1npma_          95 QNSANLGDKVKPVQLA-NLCPKVGQKCIISGWGTV  128 (225)
T ss_dssp             SSCCCCSSSSCCCEEC-SSCCCTTCEEEEEESSCS
T ss_pred             cccccccccccccccc-cccccCCceEEEecccee
Confidence            8542   235666664 445677889999998643

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=97.03  E-value=0.0072  Score=46.81  Aligned_cols=92  Identities=21%  Similarity=0.240  Sum_probs=55.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC---CeeEEeEEEEEEc-------CCCcEEEEEEccC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG---NGFYREGKMVGCD-------PAYDLAVLKVDVE  188 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g---~~~~~~A~vv~~d-------~~~DlAvLki~~~  188 (229)
                      ....+|.+|++ .+|||++|.+...     ......+...+.+.   ......-..+...       ...||||++++..
T Consensus        24 ~~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAl~~l~~~   97 (228)
T d1fxya_          24 EGFCGGTILSE-FYILTAAHCLYQA-----KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTP   97 (228)
T ss_dssp             CEEEEEEECSS-SEEEECGGGTTSC-----SSCEEEEECSCTTTCCCCEEEEEEEEEEECTTCBTTTTBTCCEEEEESSC
T ss_pred             CeEEEEEEeeC-CEEEECceeeecc-----cccccccccccccccCCcceeeeeeccceeeeeeccccccceeehhcccc
Confidence            45799999998 7999999999843     22223332222111   1111122222222       2349999999754


Q ss_pred             C---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .   ....|+.|... ....++.+++.|+...
T Consensus        98 ~~~~~~~~picL~~~-~~~~~~~~~~~gwg~~  128 (228)
T d1fxya_          98 ITFRMNVAPASLPTA-PPATGTKCLISGWGNT  128 (228)
T ss_dssp             CCCBTTBCCCCCCSS-CCCTTCEEEEEESSCC
T ss_pred             ccccccccccccccc-ccccccEEEEEecccc
Confidence            2   23677888654 4567899999997543

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0054  Score=47.53  Aligned_cols=88  Identities=16%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.||++ -+|||++|.+.       .  .+.|.+...     ..........-+...+       ..|+|||+++
T Consensus        25 ~~~C~G~LIs~-~~VLTaAhCv~-------~--~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~diall~l~   94 (224)
T d1nn6a_          25 SKFCGGFLIRR-NFVLTAAHCAG-------R--SITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLK   94 (224)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCC-------S--EEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             ceEEEEEEEeC-CEEEehhhccc-------c--cceEEecccccccccccccceeEEEEEEeecccccccccchhhhccc
Confidence            34699999998 69999999998       2  345554211     1111122222222222       3599999997


Q ss_pred             cCC---CCccceEcCC-CCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGT-SHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.+.. ......+..++..|+-.
T Consensus        95 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~  128 (224)
T d1nn6a_          95 EKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGR  128 (224)
T ss_dssp             SCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCC
T ss_pred             CCcccccccccccccccccccCCCceeeeccccc
Confidence            541   1233444433 34567889999988754

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=97.01  E-value=0.0066  Score=46.59  Aligned_cols=92  Identities=18%  Similarity=0.201  Sum_probs=57.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC----CCCeeEEeEEEEEEc-------CCCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA----KGNGFYREGKMVGCD-------PAYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~----~g~~~~~~A~vv~~d-------~~~DlAvLki~~  187 (229)
                      ....+|.+|++ -+|||++|.+.+..    ....+.......    +++  .+..+-+...       ...|||+|+++.
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~--~~~v~~~~~h~~y~~~~~~~diAll~L~~   95 (222)
T d1eq9a_          23 SHRCGASILDN-NNVLTAAHCVDGLS----NLNRLKVHVGTNYLSESGD--VYDVEDAVVNKNYDDFLLRNDVALVHLTN   95 (222)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHTTCS----CGGGEEEEESCSBTTSCCE--EEEEEEEEECTTCBTTTTBCCCEEEEESS
T ss_pred             CEEEEEEEEeC-CEEEECceeccccc----cccceeeecceeccccCcc--eeeeeeEEEeecccccccccceehhhccC
Confidence            35699999998 69999999998542    223333333211    122  2222222222       246999999975


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      +.   ....++.+........++.+.+.|+...
T Consensus        96 ~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~  128 (222)
T d1eq9a_          96 PIKFNDLVQPIKLSTNDEDLESNPCTLTGWGST  128 (222)
T ss_dssp             CCCCBTTBCCCEECSCCTTCTTSEEEEEECCCS
T ss_pred             CcccccccccccccccccccccceeEEeeeeee
Confidence            42   2255666766677888999999998653

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.99  E-value=0.0095  Score=45.95  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec-----CCCCeeEEeEEEEEEcC-------CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD-----AKGNGFYREGKMVGCDP-------AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~-----~~g~~~~~~A~vv~~d~-------~~DlAvLki~  186 (229)
                      ....+|.||++ .+|||++|.+.+       .....+....     ..++  .+..+-+...+       ..|||||+++
T Consensus        26 ~~~C~GtLIs~-~~VLTaAhC~~~-------~~~~~~~~~~~~~~~~~~~--~~~V~~i~~hp~~~~~~~~~DiAll~L~   95 (224)
T d1eufa_          26 SHICGGFLVRE-DFVLTAAHCLGS-------SINVTLGAHNIMERERTQQ--VIPVRRPIPHPDYNDETLANDIMLLKLT   95 (224)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCCE-------EEEEEESCSBTTSCCTTCE--EEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             cEEEEEEEEcC-CEEEeeceeccc-------ccceeeeeeeecccCCCcE--EEEEEEEEECCccccccccccceeeecc
Confidence            34699999998 599999999983       2222221111     1112  23333333333       4699999998


Q ss_pred             cCC---CCccceEc-CCCCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVL-GTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~l-g~s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.+ ........+......|.-.
T Consensus        96 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~  129 (224)
T d1eufa_          96 RKADITDKVSPINLPRSLAEVKPGMMCSVAGWGR  129 (224)
T ss_dssp             SCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCB
T ss_pred             ceeEEeeeEeeeeeecccccccCCceEEEecccc
Confidence            541   11222222 2344678888888887643

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0064  Score=47.18  Aligned_cols=90  Identities=16%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe-c---CCCCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF-D---AKGNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~-~---~~g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ....+|.||++ -+|||++|.+.+       .....+... +   .+........+-+...+       ..|+|||+++.
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~hp~y~~~~~~~diAll~l~~   94 (232)
T d1orfa_          23 KTICAGALIAK-DWVLTAAHCNLN-------KRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTE   94 (232)
T ss_dssp             SCEEEEEEEET-TEEEECTTCCCC-------TTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             CEEEEEEEecC-CEEEEChhhcCC-------CCcceeeeeeeccccccccccceEEEEEecccccccccCcceeEeeecc
Confidence            34799999998 599999999984       222222221 1   11111122222233322       45999999975


Q ss_pred             CC---CCccceEcCC-CCCCCCCCeEEEEecCC
Q 027022          188 EG---FELKPVVLGT-SHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       188 ~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~  216 (229)
                      +.   ....++.+.. ...+..+..+...|+..
T Consensus        95 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~  127 (232)
T d1orfa_          95 KAKINKYVTILHLPKKGDDVKPGTMCQVAGWGR  127 (232)
T ss_dssp             CCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSC
T ss_pred             ceeeeeeEeeeeecccccccccCceeeeccccc
Confidence            42   1244444432 34578899999999754

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.93  E-value=0.0052  Score=47.36  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec---CCCCeeEEeEEEEEE-------cCCCcEEEEEEccCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD---AKGNGFYREGKMVGC-------DPAYDLAVLKVDVEG  189 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~---~~g~~~~~~A~vv~~-------d~~~DlAvLki~~~~  189 (229)
                      ...+|.+|++ -+|||++|.+.       +.....+...+   .++.........+..       +...|||||+++.+-
T Consensus        23 ~~C~GtLIs~-~~VLTaAhC~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~   94 (223)
T d1hj9a_          23 HFCGGSLINS-QWVVSAAHCYK-------SGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAA   94 (223)
T ss_dssp             EEEEEEEEET-TEEEECGGGCC-------SSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCC
T ss_pred             EEEEEEEeeC-CEEEeCeeECC-------CcCcceecccccccccceeeeeceeeEEeccccccccccchhhhhhcccce
Confidence            4699999998 69999999998       33333331111   112111222332222       235699999997532


Q ss_pred             ---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          190 ---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       190 ---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                         ....|+.+.. .....+..+...|+-.
T Consensus        95 ~~~~~~~p~cl~~-~~~~~~~~~~~~g~~~  123 (223)
T d1hj9a_          95 SLNSRVASISLPT-SCASAGTQCLISGWGN  123 (223)
T ss_dssp             CCBTTBCCCBCCS-SCCCTTCEEEEEESSC
T ss_pred             eeeeeeecccccc-ccccccceEEEEeecc
Confidence               2356666654 4567788888888643

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.012  Score=45.20  Aligned_cols=93  Identities=16%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEE---cC---CCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGC---DP---AYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~---d~---~~DlAvLki~  186 (229)
                      ....+|.||++ -+|||++|.+.+.     +.....+.....+      ........+++..   ++   ..|||||+++
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIAll~L~   96 (225)
T d1a7sa_          23 RHFCGGALIHA-RFVMTAASCFQSQ-----NPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLD   96 (225)
T ss_dssp             EEEEEEEEEET-TEEEECGGGC---------CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSSCBTTTTBSCCEEEEES
T ss_pred             cEEEEEEEEcC-CEEEECeeeeeec-----cccceeeEEeeeecccccccccceeeeeeeeeeeccccccccccchhhcC
Confidence            34699999998 6999999999953     2233344442211      1111122222221   22   3599999998


Q ss_pred             cCCC---CccceEcC-CCCCCCCCCeEEEEecCCC
Q 027022          187 VEGF---ELKPVVLG-TSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~~---~~~~l~lg-~s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-.   ...++.+. ....+..++.+.+.|+...
T Consensus        97 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~  131 (225)
T d1a7sa_          97 REANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQ  131 (225)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCS
T ss_pred             CcccccccceeEEeeccccccCCCceeEecccccc
Confidence            5421   22333332 2446788899999998654

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.018  Score=43.93  Aligned_cols=93  Identities=13%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc-------CCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD-------PAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d-------~~~DlAvLki~  186 (229)
                      ....+|.||++ .+|||++|.+.+.     ....+.+.....     ...........+...       .+.|+|||+++
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~~~y~~~~~~~diAll~l~   96 (228)
T d1bioa_          23 AHLCGGVLVAE-QWVLSAAHCLEDA-----ADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLS   96 (228)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGGGC-----SSSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCCTTCCEEEEES
T ss_pred             cEEEEEEEEeC-CEEEECceeeecc-----ccceeeeeccccccccCCcceeeccceeeeeeecccCCCcccceehhhcc
Confidence            34799999998 6999999999854     233344433211     111112333333222       24699999998


Q ss_pred             cCCC---CccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          187 VEGF---ELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~~---~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-.   ...++.+.. ......|......|+...
T Consensus        97 ~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~  131 (228)
T d1bioa_          97 EKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIV  131 (228)
T ss_dssp             SCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCC
T ss_pred             ccceeeeEEeeecccccccccccCceEEEecceee
Confidence            5421   233444433 344667888888887653

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0023  Score=52.18  Aligned_cols=62  Identities=26%  Similarity=0.240  Sum_probs=40.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcC----------------CCcEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDP----------------AYDLAV  182 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~----------------~~DlAv  182 (229)
                      ....+|.||++ -+|||++|.+....    ....+.|.+...+ +  .+..+-+...+                +.||||
T Consensus        31 ~~~C~GtLIs~-~~VLTAAhCv~~~~----~~~~~~v~~g~~~-~--~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIAL  102 (287)
T d1rrka1          31 HESCMGAVVSE-YFVLTAAHCFTVDD----KEHSIKVSVGGEK-R--DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVAL  102 (287)
T ss_dssp             CEEEEEEECSS-SEEEECGGGCCTTC----CGGGEEEEETTCS-S--CEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEE
T ss_pred             cEEEEEEEecC-CEEEEChhheecCC----CcceEEEEeCCee-c--eeeeEEEEecCCccccccccccCCCcccccEEE
Confidence            34799999998 59999999997432    3445777774322 2  23333333332                259999


Q ss_pred             EEEccC
Q 027022          183 LKVDVE  188 (229)
Q Consensus       183 Lki~~~  188 (229)
                      ||++.+
T Consensus       103 l~L~~~  108 (287)
T d1rrka1         103 IKLKNK  108 (287)
T ss_dssp             EEESSC
T ss_pred             EecccC
Confidence            999753

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.015  Score=45.26  Aligned_cols=92  Identities=14%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCC-----CeeEEeEEEEEEcCCCcEEEEEEccCC---CC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKG-----NGFYREGKMVGCDPAYDLAVLKVDVEG---FE  191 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g-----~~~~~~A~vv~~d~~~DlAvLki~~~~---~~  191 (229)
                      ...+|.||++ .+|||++|.|.+...   ......+.......     ......-.........||||++++..-   ..
T Consensus        42 ~~C~GtLIs~-~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~  117 (247)
T d1rjxb_          42 HFCGGTLISP-EWVLTAAHCLEKSPR---PSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDK  117 (247)
T ss_dssp             EEEEEEEEET-TEEEEEGGGGTTCSC---GGGEEEEESCCBSSSCCTTCEEEEEEEEEECSSSCCEEEEEESSCCCCCSS
T ss_pred             EEEEEEEEeC-CEEEeeeEEEEeccC---CccceeeccccccccccceeeEEeeccccCCCccchhhhhhhhcccccccc
Confidence            4799999997 799999999985321   11222222211111     111122222233457899999997431   12


Q ss_pred             ccceEcCC-CCCCCCCCeEEEEecC
Q 027022          192 LKPVVLGT-SHDLRVGQSCFAIGNP  215 (229)
Q Consensus       192 ~~~l~lg~-s~~~~~G~~V~aiG~P  215 (229)
                      ..++.+.. ......+..++..|.-
T Consensus       118 ~~p~~l~~~~~~~~~~~~~~~~g~~  142 (247)
T d1rjxb_         118 VIPACLPSPNYVVADRTECFITGWG  142 (247)
T ss_dssp             CCCCBCCCTTCCCCTTCEEEEEECC
T ss_pred             cccccccccccccCCCceeeecccc
Confidence            23333422 2345556666666654

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0034  Score=48.79  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEc-------CCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCD-------PAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d-------~~~DlAvLki~  186 (229)
                      ....+|.||++ -+|||++|.+.       ..  ..|.+....     .....+...-+...       .+.|||||+++
T Consensus        26 ~~~C~GtLIs~-~~VLTaAhC~~-------~~--~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~DiAll~L~   95 (227)
T d1fq3a_          26 LKRCGGFLIQD-DFVLTAAHCWG-------SS--INVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLE   95 (227)
T ss_dssp             EECCEEEEEET-TEEEECGGGCC-------SE--EEEEESCSBTTTTCTTCEEEEEEEECCCTTCCTTTTTTCCEEEEES
T ss_pred             cEEEEEEEEeC-CEEEeCEeecc-------cc--ccceeccccccccccccEEEEEEEEEecccCCCCCCCcchhhhhcc
Confidence            45699999997 69999999998       22  334432211     11111222222222       25699999998


Q ss_pred             cCC---CCccceEcCC-CCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGT-SHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.|.. ...+..|..+.+.|.-.
T Consensus        96 ~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~  129 (227)
T d1fq3a_          96 RKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQ  129 (227)
T ss_dssp             SCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCC
T ss_pred             cccccceeEEEEeecccccccCCCCEEEEEeecc
Confidence            642   2344545533 34567888998888654

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.83  E-value=0.005  Score=47.81  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             ccceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEEc---------CCCcEEEE
Q 027022          118 VEGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGCD---------PAYDLAVL  183 (229)
Q Consensus       118 ~~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~d---------~~~DlAvL  183 (229)
                      .....+|.+|++ -+|||++|.+.       +.+...+.+....     .....+..+.+...         .+.|||+|
T Consensus        26 ~~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~iall   97 (241)
T d1brup_          26 WRHTCGGTLVDQ-SWVLTAAHCIS-------SSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALL   97 (241)
T ss_dssp             EEEEEEEEEEET-TEEEECGGGCC-------TTSCEEEEESCSBSSSCCTTCEEEEEEEEEECTTCCTTCGGGCCCCEEE
T ss_pred             ceEEeEEEEEeC-CEEEECeEeee-------cccccceeeeccceeccCCCccccceeeeEEEeeeeeccccCCceEEEE
Confidence            345799999998 59999999998       4455555553221     11112233333221         23579999


Q ss_pred             EEccCC---CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          184 KVDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       184 ki~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      +++..-   ....++.+... ..+..+...++.|+-..
T Consensus        98 ~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~  135 (241)
T d1brup_          98 KLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRL  135 (241)
T ss_dssp             EESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCS
T ss_pred             ecccccccccceeeeeeccccccCCCceeEEEEeeecc
Confidence            997431   22445444333 34667888888887543

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.011  Score=45.94  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEE-------cCCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGC-------DPAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~-------d~~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+....    ....+.+.....       ...  .+..+.+..       ....|||||+
T Consensus        26 ~~~C~GtLIs~-~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~h~~~~~~~~~~diAll~   98 (237)
T d1xx9a_          26 RHLCGGSIIGN-QWILTAAHCFYGVE----SPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHDQYKMAESGYDIALLK   98 (237)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGTTCS----CGGGEEEEESCSBGGGCCTTCC--CEEEEEEEECTTCSCTTTSCCCEEEE
T ss_pred             cEEEEEEEEeC-CEEEeCeEeeeccc----CccceeeecccccccccccceE--EEEeeEEEEecccccccccceeEEEE
Confidence            34699999998 69999999998532    334444444211       112  233333332       2456999999


Q ss_pred             EccCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....++.+... ......+.+++.|+..
T Consensus        99 L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~  134 (237)
T d1xx9a_          99 LETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY  134 (237)
T ss_dssp             ESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCC
T ss_pred             eccccccccccceEEecccccccccccccEEEEeec
Confidence            97542   12344444333 3455667788888764

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=96.77  E-value=0.0045  Score=48.15  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC---CCCeeEEeEEEEEEcC-------CCcEEEEEEccC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA---KGNGFYREGKMVGCDP-------AYDLAVLKVDVE  188 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~---~g~~~~~~A~vv~~d~-------~~DlAvLki~~~  188 (229)
                      ....+|.+|++ -+|||++|.+.       +...+.+.+...   ++.. .+..+-+...+       ..|||||+++..
T Consensus        27 ~~~C~GtLIs~-~~VLTaAhC~~-------~~~~~~v~~~~~~~~~~~~-~~~v~~i~~hp~y~~~~~~~DiALl~L~~~   97 (230)
T d2hlca_          27 RVWCGGSLIDN-KWILTAAHCVH-------DAVSVVVYLGSAVQYEGEA-VVNSERIISHSMFNPDTYLNDVALIKIPHV   97 (230)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHT-------TEEEEEEEESCSBTTCCSE-EEECSEEEECTTCBTTTTBTCCEEEECSCC
T ss_pred             eeEEEEEEEeC-CEEEEeeeccc-------ccccceeecccceeccccc-ceeeEeEEeeecccccccccceeEEEeecc
Confidence            45699999998 59999999998       556666665322   1121 22322222222       359999999743


Q ss_pred             C--CCccceEcCCC---CCCCCCCeEEEEecCCC
Q 027022          189 G--FELKPVVLGTS---HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~--~~~~~l~lg~s---~~~~~G~~V~aiG~P~G  217 (229)
                      .  ....++.|...   .....+..+...|+-..
T Consensus        98 ~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~  131 (230)
T d2hlca_          98 EYTDNIQPIRLPSGEELNNKFENIWATVSGWGQS  131 (230)
T ss_dssp             CCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCC
T ss_pred             cccccceeEEeeccccccccccceeEEEEeeccc
Confidence            2  12345555322   23466777777776543

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.75  E-value=0.0053  Score=47.77  Aligned_cols=91  Identities=16%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCCCCeeE-------EeEEEEEEcC---------CCcEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFY-------REGKMVGCDP---------AYDLAV  182 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~-------~~A~vv~~d~---------~~DlAv  182 (229)
                      ....+|.+|++ -+|||++|.|.       +.....+.+.........       +...-+...+         +.||||
T Consensus        17 ~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~diAl   88 (232)
T d1fona_          17 HHTCGGSLIAP-DWVVTAGHCIS-------TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIAL   88 (232)
T ss_dssp             EEEECCEEEET-TEEEECGGGCC-------TTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEE
T ss_pred             EEEEEEEEecC-CEEEEChhhcc-------CCCceEEEEEeccccccccccccccceeEEEEEccCccccccccccceee
Confidence            34799999998 59999999999       455555544322111000       0111111222         379999


Q ss_pred             EEEccCC---CCccceEcCCC-CCCCCCCeEEEEecCCC
Q 027022          183 LKVDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       183 Lki~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~G  217 (229)
                      |+++.+-   ....++.+... ..+..+..+++.|....
T Consensus        89 l~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~  127 (232)
T d1fona_          89 VKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRL  127 (232)
T ss_dssp             EECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTC
T ss_pred             eecccceEEeecceeeecCcccccCCCCceeEeeccccc
Confidence            9997542   22444444433 34566788888887543

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0059  Score=48.31  Aligned_cols=87  Identities=18%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             eEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEe--------cCCCCeeEEeEEEEEEcC--------------CC
Q 027022          121 TGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLF--------DAKGNGFYREGKMVGCDP--------------AY  178 (229)
Q Consensus       121 ~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~--------~~~g~~~~~~A~vv~~d~--------------~~  178 (229)
                      ..+|.+|++ -+|||++|.|.+.       ....+.+.        ...++  .+...-+...+              ..
T Consensus        35 ~C~GtLIs~-~~VLTaAhCv~~~-------~~~~v~~g~~~~~~~~~~~~~--~~~v~~i~~hp~~~~~~~~~~~~~~~~  104 (259)
T d1elva1          35 WAGGALINE-YWVLTAAHVVEGN-------REPTMYVGSTSVQTSRLAKSK--MLTPEHVFIHPGWKLLAVPEGRTNFDN  104 (259)
T ss_dssp             EEEEEEEET-TEEEECHHHHTTC-------SSCCEECSCSBCC-------C--EECEEEEEECTTSCCCSSCTTCCCCTT
T ss_pred             eEEEEEEeC-CEEEecccccccc-------cceeEEeeeeeeecccccccc--cccceeEeecceeecccccccCCCccc
Confidence            699999997 5999999999843       33333321        11122  33333333332              35


Q ss_pred             cEEEEEEccCC---CCccceEcCCC---CCCCCCCeEEEEecCCC
Q 027022          179 DLAVLKVDVEG---FELKPVVLGTS---HDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       179 DlAvLki~~~~---~~~~~l~lg~s---~~~~~G~~V~aiG~P~G  217 (229)
                      ||||||++.+-   ....++-+...   ..+..|...+..|+...
T Consensus       105 DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~  149 (259)
T d1elva1         105 DIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT  149 (259)
T ss_dssp             CCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCC
T ss_pred             ceeeeecccceehhcccCceeeccCccccccccceEEEEeccccc
Confidence            99999997542   12344444332   24678889998887653

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.62  E-value=0.017  Score=44.55  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC------CCeeEEeEEEEEEcC-------CCcEEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK------GNGFYREGKMVGCDP-------AYDLAVLKV  185 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~------g~~~~~~A~vv~~d~-------~~DlAvLki  185 (229)
                      ....+|.||++ .+|||++|.|.+...   ......+......      .....+....+...+       ..|||||++
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~hp~~~~~~~~~diAli~L   98 (235)
T d1ekbb_          23 QQVCGASLVSR-DWLVSAAHCVYGRNM---EPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHL   98 (235)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHTTCCS---SGGGEEEEESCCBTTCCCCTTCEEEEEEEEEECTTCBTTTTBSCCEEEEE
T ss_pred             CEEEEEEEEcC-CEEEEChhhccCCCC---CccceeeeecccccccccCcceeEeeeeeeeecccccccCccchhhhhhh
Confidence            34699999998 699999999975322   2222333332110      111123333333332       469999999


Q ss_pred             ccCC---CCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          186 DVEG---FELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       186 ~~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                      +.+-   ....|+-|.. ......++.+.+.|+...
T Consensus        99 ~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~  134 (235)
T d1ekbb_          99 EMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGAL  134 (235)
T ss_dssp             SSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBS
T ss_pred             cCceecCCceeeEECCCccccCCcceEEEEeccccc
Confidence            8541   2345666643 234677899999998654

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=96.57  E-value=0.046  Score=42.21  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEec-----CCCCeeEE-eEEEEEE---c---CCCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFD-----AKGNGFYR-EGKMVGC---D---PAYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~-----~~g~~~~~-~A~vv~~---d---~~~DlAvLki~~  187 (229)
                      ...+|.+|++ .+|||.+|++.+....  ....+.+....     .++....+ ..++...   |   ...|||||+++.
T Consensus        28 ~~C~GtLIs~-~~VLTaAhCv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~h~~y~~~~~~~diAll~l~~  104 (237)
T d2f91a1          28 HFCGASIYNE-NYAITAGHCVYGDDYE--NPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSG  104 (237)
T ss_dssp             EEEEEEEEET-TEEEECGGGTTTSCTT--SCCSEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESS
T ss_pred             EEEEEEEEeC-CEEEECcccccccCCc--cccceeEEeeecccccccCcceeeeEEEEEEccccCCCccccceeeecccc
Confidence            4699999998 5999999999853211  12334443321     11111112 2333322   1   245999999975


Q ss_pred             CC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .-   ....++.+. ......+..+...|+...
T Consensus       105 ~v~~~~~~~~i~~~-~~~~~~~~~~~~~g~g~~  136 (237)
T d2f91a1         105 SLTFNDNVAPIALP-EQGHTATGDVIVTGWGTT  136 (237)
T ss_dssp             CCCCBTTBCCCBCC-CTTCCCCSEEEEEESCCS
T ss_pred             ccccCCceeeeecc-ccCcccccceeecccccc
Confidence            41   234444443 334677889999997553

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.54  E-value=0.0053  Score=47.70  Aligned_cols=90  Identities=14%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC----CCCeeE-EeEEEEE----------------EcCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA----KGNGFY-REGKMVG----------------CDPA  177 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~----~g~~~~-~~A~vv~----------------~d~~  177 (229)
                      ....+|.+|++ -+|||++|.+.+       .....+.....    ...... .....+.                .+..
T Consensus        23 ~~~C~GtLIs~-~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (237)
T d1gvza_          23 HFQCGGVLVHP-QWVLTAAHCMSD-------DYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDIS   94 (237)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCCS-------SCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGGGGGCSSCCTTSCCT
T ss_pred             eEEEEEEEEeC-CEEEeChhhccC-------CCceeEeeeeeccccCcceeeeeeeEEeeeeeeeeeeecccccCccccc
Confidence            35799999997 699999999983       22222211100    011101 1111111                1225


Q ss_pred             CcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCCC
Q 027022          178 YDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       178 ~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~G  217 (229)
                      .|||||+++.+-   ....++.+. ......++.++..|+-..
T Consensus        95 ~Diali~L~~pv~~~~~v~p~~l~-~~~~~~~~~~~~~g~g~~  136 (237)
T d1gvza_          95 HDLMLLRLAQPARITDAVKILDLP-TQEPKLGSTCYTSGWGLI  136 (237)
T ss_dssp             TCCEEEEESSCCCCBTTBCCCCCC-SSCCCTTCEEEEEEEECS
T ss_pred             cceEEEEECCceeccccccccccc-ccccccceeEEEEeeeee
Confidence            799999997531   235566664 456778899999887653

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.007  Score=47.44  Aligned_cols=96  Identities=18%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC------CCCeeEEeEEEEE---Ec------CCCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA------KGNGFYREGKMVG---CD------PAYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~------~g~~~~~~A~vv~---~d------~~~DlAvLk  184 (229)
                      ...+|.+|++ -+|||++|.+.+..........+.|.+-..      +...+. ..+++.   ++      ...|||||+
T Consensus        22 ~~C~GtLIs~-~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~-v~~i~vhp~y~~~~~~~~~~DiAll~   99 (240)
T d2qy0b1          22 GRGGGALLGD-RWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHP-IRRVSVHPDYRQDESYNFEGDIALLE   99 (240)
T ss_dssp             SEEEEEEETT-TEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCC-EEEEEECTTCCTTCSSCCTTCCEEEE
T ss_pred             ceEEEEEEcC-CEEEEChHhCCCcccccccccceeeeeeeccccccCCcceEE-EEEEEeccccccccccccCCCceEEe
Confidence            4699999997 699999999985432222223455655211      011111 123322   11      235999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecCCC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNPYG  217 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P~G  217 (229)
                      ++.+-   ....++.+.... ....+..++..|+...
T Consensus       100 L~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~  136 (240)
T d2qy0b1         100 LENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM  136 (240)
T ss_dssp             ESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCC
T ss_pred             cCCccccccccceEEecccccccccCceeeecccccc
Confidence            98542   235566664443 3457888888887554

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.01  Score=46.34  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEcC-------CCcEEEEEEcc
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCDP-------AYDLAVLKVDV  187 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d~-------~~DlAvLki~~  187 (229)
                      ...+|.||++ .+|||++|.+.+..    ....+.+.....     ++.........+...+       ..||||||++.
T Consensus        24 ~~C~GtLIs~-~~VLTAAhCv~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~   98 (254)
T d2bz6h1          24 QLCGGTLINT-IWVVSAAHCFDKIK----NWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQ   98 (254)
T ss_dssp             EEEEEEECSS-SEEEECGGGGTTCS----CGGGEEEEESCCBTTCCCSCCEEEEEEEEEEETTCCTTSCSSCCEEEEESS
T ss_pred             EEEEEEEeCC-CEEEECcccccCCC----CcccceeeccceeeccccccceeeeeeeeeecccccccccccceeEEEecC
Confidence            4699999997 69999999998532    334444443221     1111122222222221       45999999975


Q ss_pred             CC---CCccceEcCC----CCCCCCCCeEEEEecCCC
Q 027022          188 EG---FELKPVVLGT----SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       188 ~~---~~~~~l~lg~----s~~~~~G~~V~aiG~P~G  217 (229)
                      +-   ....++.|.+    ...+..+......|+...
T Consensus        99 ~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~  135 (254)
T d2bz6h1          99 PVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL  135 (254)
T ss_dssp             CCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBS
T ss_pred             cccccceEeeeecCccccccccccCCceEEEeccCcc
Confidence            31   1233333422    123446666666666544

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0083  Score=46.18  Aligned_cols=62  Identities=27%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC-----CCeeEEeEEEEEE-------cCCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK-----GNGFYREGKMVGC-------DPAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~-----g~~~~~~A~vv~~-------d~~~DlAvLki~  186 (229)
                      ....+|.+|++ -+|||++|.+.       +.....+......     .....+..+.+..       ....|||||+++
T Consensus        24 ~~~C~GtlIs~-~~VLTaAhCv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~~~~~~diAll~L~   95 (233)
T d2p3ub1          24 EGFCGGTILSE-FYILTAAHCLY-------QAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLK   95 (233)
T ss_dssp             CEEEEEEECSS-SEEEECGGGGG-------SCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTTCTTCCEEEEES
T ss_pred             CeEEEEEEEeC-CEEEECceecc-------cccccccccccccccccCCCceeecceeEEEeecccccccccceeeeecc
Confidence            34699999998 59999999998       4444444433221     1111233333333       335699999997


Q ss_pred             cC
Q 027022          187 VE  188 (229)
Q Consensus       187 ~~  188 (229)
                      .+
T Consensus        96 ~p   97 (233)
T d2p3ub1          96 TP   97 (233)
T ss_dssp             SC
T ss_pred             cc
Confidence            54

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.027  Score=44.06  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-------CCCeeEEeEEEEEE-------cCCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-------KGNGFYREGKMVGC-------DPAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-------~g~~~~~~A~vv~~-------d~~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.+       .....+.....       .... .....-+..       ....|+||++
T Consensus        40 ~~~C~G~LIs~-~~VLTaAhC~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~h~~y~~~~~~~diali~  110 (251)
T d1pytd_          40 RHTCGGTLITP-NHVLTAAHCISN-------TLTYRVALGKNNLEVEDEAGSL-YVGVDTIFVHEKWNSFLVRNDIALIK  110 (251)
T ss_dssp             EEEEEEEEEET-TEEEECGGGCCT-------TCCEEEEESCSBTTCSCCSSCE-EEEEEEEEECTTCBTTTTBSCCEEEE
T ss_pred             eeEEeEEEEcC-CeEEEeeecccc-------cccceeeeeeeeeecccCCCce-EEeEEEEEEeeeecccccCCceeeee
Confidence            45699999998 599999999994       33333332211       1111 122222222       2357999999


Q ss_pred             EccCC---CCccceEcCCCC-CCCCCCeEEEEecC
Q 027022          185 VDVEG---FELKPVVLGTSH-DLRVGQSCFAIGNP  215 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s~-~~~~G~~V~aiG~P  215 (229)
                      ++.+-   ....++.+...+ ....|..++..|..
T Consensus       111 l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~  145 (251)
T d1pytd_         111 LAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWG  145 (251)
T ss_dssp             ESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCC
T ss_pred             cCCCcccCceeEEEEeeccccCCCCceeEEEecCc
Confidence            97541   235566665544 35567788877764

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.39  E-value=0.039  Score=42.34  Aligned_cols=90  Identities=20%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEe--EEEEEE-------cCCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYRE--GKMVGC-------DPAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~--A~vv~~-------d~~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||++|.+.       +.....|.+...     .+......  ..++..       ....|||+|+
T Consensus        27 ~~~C~GtLIs~-~~VLTaAhCv~-------~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diAll~   98 (240)
T d1gvkb_          27 AHTCGGTLIRQ-NWVMTAAHCVD-------RELTFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLR   98 (240)
T ss_dssp             EEEEEEEEEET-TEEEECGGGGC-------SCCCEEEEESCSBTTSCCSCCEEEEEEEEEECTTCCTTCGGGCCCCEEEE
T ss_pred             ceEEEEEEEeC-CEEEECccccc-------ccCCceEEeeeeeccccccccccccccceeEEEeecccccccCcceeeec
Confidence            34699999998 59999999999       444444544211     11111111  122211       2356999999


Q ss_pred             EccCC---CCccceEcCCC-CCCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGTS-HDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~s-~~~~~G~~V~aiG~P~  216 (229)
                      ++.+.   ....++.+... .....+......|...
T Consensus        99 l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~  134 (240)
T d1gvkb_          99 LAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGL  134 (240)
T ss_dssp             ESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCB
T ss_pred             ccCcccccccccceeeccCccccccccceeEecccc
Confidence            97442   12344445333 3455566666666543

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0032  Score=48.84  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAK  142 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~  142 (229)
                      ....+|.+|++ .+|||++|.+.+
T Consensus        23 ~~~C~GtLI~~-~~VLTaAhCv~~   45 (235)
T d1rfna_          23 DAFCGGSIVNE-KWIVTAAHCVET   45 (235)
T ss_dssp             TTCEEEEEEET-TEEEECGGGCCT
T ss_pred             CEEEEEEEeeC-CEEEEChhhcCC
Confidence            35699999998 599999999984

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.024  Score=44.14  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC--CCeeEEeEEEEEEc-------CCCcEEEEEEccCC
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK--GNGFYREGKMVGCD-------PAYDLAVLKVDVEG  189 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~--g~~~~~~A~vv~~d-------~~~DlAvLki~~~~  189 (229)
                      ....+|.+|++ -+|||++|.+.+...   ....+.+.+....  .....+...-+...       ...|||||+++.+-
T Consensus        26 ~~~C~GtLIs~-~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~i~~hp~~~~~~~~~diAli~L~~~~  101 (243)
T d2fpza1          26 MHFCGGSLIHP-QWVLTAAHCVGPDVK---DLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPV  101 (243)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHCSBCC---CGGGEEEECCCSBTTTTCCCEEEEEEEECTTCSCTTTSCCCEEEEESSCC
T ss_pred             cEEEEEEEEeC-CEEEECceeccCCCC---cceeEEEEeeecccccccEEEeeeeeeccccccccccccchhhhcccCcc
Confidence            34699999998 599999999985321   2233444332110  11112232222222       24699999998542


Q ss_pred             ---CCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          190 ---FELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       190 ---~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                         ....++.+.. ......+....+.++-..
T Consensus       102 ~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~  133 (243)
T d2fpza1         102 KVSSHVHTVTLPPASETFPPGMPCWVTGWGDV  133 (243)
T ss_dssp             CCCSSSCCCBCCCTTCCCCTTCEEEEEESSCS
T ss_pred             ccceeEEEeecCchhhccCCCceeEEEecccc
Confidence               1233333432 334567788888876543

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.029  Score=42.64  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecCC----CCeeEEeEEEEEE----c---CCCcEEEEEEcc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDAK----GNGFYREGKMVGC----D---PAYDLAVLKVDV  187 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~----g~~~~~~A~vv~~----d---~~~DlAvLki~~  187 (229)
                      ....+|.+|++ -+|||++|.+.+.     ....+.+.+...+    .....+.......    +   ...|+|||+++.
T Consensus        23 ~~~C~G~LIs~-~~VLTaAhC~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diall~l~~   96 (218)
T d2z7fe1          23 GHFCGATLIAP-NFVMSAAHCVANV-----NVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNG   96 (218)
T ss_dssp             EEEEEEEEEET-TEEEECHHHHTTS-----CGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCCBTTTTBSCCEEEEESS
T ss_pred             CeEEEEEEEeC-CEEEECeEecccc-----cccceeeeeeeccccccccceeeeeeeeEeeeccccccccceEEEeeccc
Confidence            34699999998 5999999999853     3344555554221    1111121122111    1   246999999985


Q ss_pred             CC---CCccceEcCC-CCCCCCCCeEEEEecC
Q 027022          188 EG---FELKPVVLGT-SHDLRVGQSCFAIGNP  215 (229)
Q Consensus       188 ~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P  215 (229)
                      +-   ....++-+.. +..+..+..++..|+.
T Consensus        97 ~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~  128 (218)
T d2z7fe1          97 SATINANVQVAQLPAQGRRLGNGVQCLAMGWG  128 (218)
T ss_dssp             CCCCSSSCCCCCCCCTTCCCCTTCEEEEEESS
T ss_pred             cceeeeeeeeeeeccCccccCCCcEEEEeccc
Confidence            42   2234444432 3456677778888864

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=96.21  E-value=0.056  Score=41.42  Aligned_cols=88  Identities=19%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEe-EEEEEE------cCCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYRE-GKMVGC------DPAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~-A~vv~~------d~~~DlAvLki~  186 (229)
                      ....+|.||++ -+|||.+|.+.         ....|.+...     +....... .+++..      ....|||||+++
T Consensus        27 ~~~C~GtLIs~-~~VLTaA~C~~---------~~~~v~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~diall~L~   96 (224)
T d3rp2a_          27 RVICGGFLISR-QFVLTAAHCKG---------REITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLE   96 (224)
T ss_dssp             EEEEEEEESSS-SEEEECGGGCC---------SEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCCSSSCCSCCEEEEES
T ss_pred             eEEEEEEEEcC-CeeEecccccc---------cccEEEeccccccCccccceeeeEEEEEecccccccccccceeeeeec
Confidence            34699999997 69999999997         2344544321     01111222 222221      225699999998


Q ss_pred             cCC---CCccceEcCC-CCCCCCCCeEEEEecCC
Q 027022          187 VEG---FELKPVVLGT-SHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       187 ~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~  216 (229)
                      .+-   ....++.+.. +..+..+..++..|+-.
T Consensus        97 ~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~  130 (224)
T d3rp2a_          97 KKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK  130 (224)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSE
T ss_pred             ceeEeccccceEEecccccccCCCcEEEEeeeee
Confidence            542   1234444433 34577788888887653

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.013  Score=45.71  Aligned_cols=94  Identities=15%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC---CCCeeEEeEEEEEE----c----CCCcEEEEEEccC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA---KGNGFYREGKMVGC----D----PAYDLAVLKVDVE  188 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~---~g~~~~~~A~vv~~----d----~~~DlAvLki~~~  188 (229)
                      ...+|.+|++ -+|||++|.+.+...   +...+.|.....   ++....+...-+..    +    ...||||||++.+
T Consensus        22 ~~C~GtLIs~-~~VLTaAhCv~~~~~---~~~~~~v~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~   97 (242)
T d1q3xa1          22 TTAAGALLYD-NWVLTAAHAVYEQKH---DASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK   97 (242)
T ss_dssp             SSEEEEEETT-TEEEECHHHHHHHHT---TTCCCEEEESCSBTTCSCSEEEEEEEEEECTTCCTTSCCTTCCEEEEESSC
T ss_pred             CEEEEEEEcC-CEEEEChhhccCCCC---CcceEEEEeeeeeeccccccccceeeeEEeeccccccccCccccccccCCC
Confidence            4699999997 699999999864321   233445544321   11111222222222    1    2459999999754


Q ss_pred             C---CCccceEcCC---CCCCCCCCeEEEEecCCC
Q 027022          189 G---FELKPVVLGT---SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       189 ~---~~~~~l~lg~---s~~~~~G~~V~aiG~P~G  217 (229)
                      -   ....++.+..   ......++.....|+...
T Consensus        98 ~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~  132 (242)
T d1q3xa1          98 VVINSNITPICLPRKEAESFMRTDDIGTASGWGLT  132 (242)
T ss_dssp             CCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCC
T ss_pred             ccccccEEEEeccccccccccccceeeeeeecccc
Confidence            1   1233444422   123567788888887654

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.066  Score=40.80  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=53.5

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEEc-------CCCcEEEEEEc
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGCD-------PAYDLAVLKVD  186 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~d-------~~~DlAvLki~  186 (229)
                      ....+|.||++ -+|||++|.+.       +  ...|.+...     +........+-+...       ...|+||++++
T Consensus        26 ~~~C~GtlI~~-~~VLTaAhC~~-------~--~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~diaL~~l~   95 (224)
T d1t32a1          26 QSRCGGFLVRE-DFVLTAAHCWG-------S--NINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLS   95 (224)
T ss_dssp             SCEEEEEEEET-TEEEECGGGCC-------S--CEEEEESCSBTTSCCTTCEEEEEEEEEECTTCBTTTTBTCCEEEEES
T ss_pred             CEEEEEEEEcC-CEEEEeEEccc-------c--cccceeeeeeeeccccceeeecceeEEEeecccccccccceeEEeec
Confidence            35799999998 69999999998       2  234444221     111112222333322       24699999997


Q ss_pred             cCC---CCccceEcCC-CCCCCCCCeEEEEecCCC
Q 027022          187 VEG---FELKPVVLGT-SHDLRVGQSCFAIGNPYG  217 (229)
Q Consensus       187 ~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~G  217 (229)
                      .+-   ....++.+.. ...+..+...++.|+-..
T Consensus        96 ~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~  130 (224)
T d1t32a1          96 RRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV  130 (224)
T ss_dssp             SCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCS
T ss_pred             cccccCcccCccccccccccCCCCCEEEEeccccc
Confidence            542   2234444433 345778889998887653

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.088  Score=40.73  Aligned_cols=95  Identities=19%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCC-CCcceEEEEEecC-------CCCeeEEeEEEEEEcC-------CCcEEEEE
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDT-SGLHRCKVSLFDA-------KGNGFYREGKMVGCDP-------AYDLAVLK  184 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~-~~~~~~~V~~~~~-------~g~~~~~~A~vv~~d~-------~~DlAvLk  184 (229)
                      ...+|.+|++ -+|||++|.+.+..... .......+.....       ++.. .+..+-+...+       ..|||||+
T Consensus        25 ~~C~GtlIs~-~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~Hp~y~~~~~~~diAll~  102 (241)
T d1eaxa_          25 HICGASLISP-NWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQ-ERRLKRIISHPFFNDFTFDYDIALLE  102 (241)
T ss_dssp             EEEEEEECSS-SEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCE-EEEEEEEEECTTCCTTTCTTCCEEEE
T ss_pred             EEEEEEEEcC-CEEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcE-EEEEEEEEECCcccccccCCcccccc
Confidence            3799999998 59999999998542211 1222334433211       1111 33444443333       46999999


Q ss_pred             EccCC---CCccceEcCC-CCCCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVLGT-SHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~lg~-s~~~~~G~~V~aiG~P~  216 (229)
                      ++.+-   ....++.+.. ......+..++..|+-.
T Consensus       103 L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~  138 (241)
T d1eaxa_         103 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGH  138 (241)
T ss_dssp             ESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSB
T ss_pred             cCCceecCcccceeeccccccccccceeEEEeccCC
Confidence            97542   2355666644 33456778888887643

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=95.99  E-value=0.072  Score=40.80  Aligned_cols=88  Identities=18%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC---CCCeeEEeE------------------EEEEEcCCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA---KGNGFYREG------------------KMVGCDPAY  178 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~---~g~~~~~~A------------------~vv~~d~~~  178 (229)
                      ...+|.+|++ -+|||++|.+.+       .....+.....   .........                  .....+...
T Consensus        22 ~~C~GtLIs~-~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (235)
T d1tona_          22 YLCGGVLIDP-SWVITAAHCYSN-------NYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSN   93 (235)
T ss_dssp             SEEEEEEEET-TEEEECGGGCCS-------CCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC--------CCCCSTT
T ss_pred             eEEEEEEecC-CEEEECceecCC-------CCceEEeeeeeecCCCceeEeeeeeeeeeeeceeeeeeeccccccccccc
Confidence            5799999998 599999999973       22221111100   000000000                  011123456


Q ss_pred             cEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecCC
Q 027022          179 DLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       179 DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P~  216 (229)
                      |+|+|++..+-   ..+.++.+. ..........++.|+..
T Consensus        94 Diall~L~~~v~~~~~i~~i~l~-~~~~~~~~~~~~~g~g~  133 (235)
T d1tona_          94 DLMLLHLSEPADITGGVKVIDLP-TKEPKVGSTCLASGWGS  133 (235)
T ss_dssp             CCEEEEESSCCCCCSSCCCCCCC-CSCCCTTCEEEEEESSC
T ss_pred             ceeEEEecCccccCCcccccccc-cccccccceeEEEEccc
Confidence            99999997541   335666664 34567788888888764

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=95.98  E-value=0.034  Score=42.75  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             cceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEEecC-----CCCeeEEeEEEEEE----c-----CCCcEEEEE
Q 027022          119 EGTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSLFDA-----KGNGFYREGKMVGC----D-----PAYDLAVLK  184 (229)
Q Consensus       119 ~~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~-----~g~~~~~~A~vv~~----d-----~~~DlAvLk  184 (229)
                      ....+|.+|++ -+|||.+|.+...     ....+.|.....     .+.. .+..+.+..    +     .+.|||||+
T Consensus        26 ~~~C~GtLIs~-~~VLTaAhCv~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~v~~~~~h~~~~~~~~~~~~diall~   98 (241)
T d1m9ua_          26 SHSCGASLLSS-TSALSASHCVDGV-----LPNNIRVIAGLWQQSDTSGTQ-TANVDSYTMHENYGAGTASYSNDIAILH   98 (241)
T ss_dssp             EEEEEEEECSS-SEEEECHHHHTTC-----CGGGEEEEESCSBTTCCTTCE-EEEEEEEEECTTTTCSSSTTTTCCEEEE
T ss_pred             cEEEEEEEEeC-CEEEEChhhcccc-----cCceeeEEEEeeecccccccc-cccceeeeeeeeeccccccccccceeee
Confidence            34799999998 4999999999743     344555554321     1111 233333332    1     235999999


Q ss_pred             EccCC---CCccceEc-CCCCCCCCCCeEEEEecCC
Q 027022          185 VDVEG---FELKPVVL-GTSHDLRVGQSCFAIGNPY  216 (229)
Q Consensus       185 i~~~~---~~~~~l~l-g~s~~~~~G~~V~aiG~P~  216 (229)
                      ++.+.   ....++-+ ........|..+++.|...
T Consensus        99 l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~  134 (241)
T d1m9ua_          99 LATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGR  134 (241)
T ss_dssp             ESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSC
T ss_pred             ccceeeeeeceeeeeeeccccccccceEEEEeeccc
Confidence            97532   12333333 2344677888888888643

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.022  Score=43.80  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             ceEEEEEEcCCcEEEEccccccccccCCCCcceEEEEE----ecCCCCeeEEeEEE-------------EE--E---cCC
Q 027022          120 GTGSGFVWDKFGHIVTNYHVVAKLATDTSGLHRCKVSL----FDAKGNGFYREGKM-------------VG--C---DPA  177 (229)
Q Consensus       120 ~~GSGfiI~~~G~IlTn~HVv~~~~~~~~~~~~~~V~~----~~~~g~~~~~~A~v-------------v~--~---d~~  177 (229)
                      ...+|.||++ -+|||++|.|.+       ...+.+..    ....... ......             ..  +   +..
T Consensus        15 ~~C~GtLIs~-~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (228)
T d1sgfa_          15 YQCGGVLLDR-NWVLTAAHCYND-------KYQVWLGKNNFLEDEPSDQ-HRLVSKAIPHPDFNMSLLNEHTPQPEDDYS   85 (228)
T ss_dssp             CCEEEEECSS-SEEEECGGGCCS-------CCEEEECC----C-CTTCE-EEEEEEEEECTTSCGGGC----CCTTCBCT
T ss_pred             EEEEEEEEcC-CEEEeCHHHccC-------CceEEEeeeeeccccccce-eeeeeeeccccceeeeeecccCCCCccccc
Confidence            4699999998 599999999983       22221110    0000110 111110             11  1   235


Q ss_pred             CcEEEEEEccCC---CCccceEcCCCCCCCCCCeEEEEecC
Q 027022          178 YDLAVLKVDVEG---FELKPVVLGTSHDLRVGQSCFAIGNP  215 (229)
Q Consensus       178 ~DlAvLki~~~~---~~~~~l~lg~s~~~~~G~~V~aiG~P  215 (229)
                      .|||||+++.+-   ....++.|.. .....++.....|.-
T Consensus        86 ~Diall~L~~~v~~~~~v~pi~l~~-~~~~~~~~~~~~g~~  125 (228)
T d1sgfa_          86 NDLMLLRLSKPADITDVVKPITLPT-EEPKLGSTCLASGWG  125 (228)
T ss_dssp             TCCEEEEESSCCCCCSSCCCCCCCC-SCCCTTCEEEEC---
T ss_pred             cceeEEeeccccccCCceeeEecCc-cccccCcceEEEeee
Confidence            699999998542   3467777754 456677777777764

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=95.92  E-value=0.0054  Score=49.15  Aligned_cols=68  Identities=10%  Similarity=-0.054  Sum_probs=41.2

Q ss_pred             ccceEEEEEEcC-----CcEEEEccccccccccCCCCcceEEEEEecC------------------CCCeeEEeEEEEEE
Q 027022          118 VEGTGSGFVWDK-----FGHIVTNYHVVAKLATDTSGLHRCKVSLFDA------------------KGNGFYREGKMVGC  174 (229)
Q Consensus       118 ~~~~GSGfiI~~-----~G~IlTn~HVv~~~~~~~~~~~~~~V~~~~~------------------~g~~~~~~A~vv~~  174 (229)
                      .....+|.+|++     +-||||++|.|.+...   ....+.+.+...                  +-........+...
T Consensus        32 g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (263)
T d1arba_          32 GTLACTGSLVNNTANDRKMYFLTAHHCGMGTAS---TAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKAT  108 (263)
T ss_dssp             TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHH---HHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEE
T ss_pred             CcEEEEEEEECCCCCCccceEEEchhhCCCCCC---cceEEEEEEEeecccceeeeeeeeecccCccceeeecchheeec
Confidence            456899999984     3599999999984311   011122222111                  11112344566677


Q ss_pred             cCCCcEEEEEEccC
Q 027022          175 DPAYDLAVLKVDVE  188 (229)
Q Consensus       175 d~~~DlAvLki~~~  188 (229)
                      +...|+||++++.+
T Consensus       109 ~~~~Diall~l~~~  122 (263)
T d1arba_         109 YATSDFTLLELNNA  122 (263)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             CCCcceeeeecccc
Confidence            78899999999743

>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: NSP4 proteinase
species: Equine arteritis virus, EAV [TaxId: 11047]

Probab=84.21  E-value=2  Score=32.27  Aligned_cols=85  Identities=15%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             ccceEEEEEEcCCc--EEEEccccccccccCCCCcceEEEEEecCCCCeeEEeEEEEEEcCCCcEEEEEEcc-CC-CCcc
Q 027022          118 VEGTGSGFVWDKFG--HIVTNYHVVAKLATDTSGLHRCKVSLFDAKGNGFYREGKMVGCDPAYDLAVLKVDV-EG-FELK  193 (229)
Q Consensus       118 ~~~~GSGfiI~~~G--~IlTn~HVv~~~~~~~~~~~~~~V~~~~~~g~~~~~~A~vv~~d~~~DlAvLki~~-~~-~~~~  193 (229)
                      ..+.|||=++..+|  .++|+.||+.       +...-.+.+.+   .  ++..   -++-.-|.|.-++.. ++ ...|
T Consensus        11 GSs~GSGGVfTi~g~~vvvTAtHvl~-------~~~~~~~~~g~---~--~~~l---tFk~~GDyA~A~~~~~~w~G~aP   75 (198)
T d1mbma_          11 GSSYGTGSVWTRNNEVVVLTASHVVG-------RANMATLKIGD---A--MLTL---TFKKNGDFAEAVTTQSELPGNWP   75 (198)
T ss_dssp             SSSEEEEEEEEETTEEEEEEEHHHHC-------TTCEEEEEETT---E--EEEE---ECEEETTEEEEEECTTTSCSCCC
T ss_pred             eeccCCcceEEeCCcEEEEEeEEEec-------CCceeEEeecc---c--eEEE---EEeecCceEEEeeccccCCCCCC
Confidence            35677776665555  7899999997       34444444422   1  2222   456677899887742 22 3578


Q ss_pred             ceEcCCCCC------CCCCCeEEEEecCCC
Q 027022          194 PVVLGTSHD------LRVGQSCFAIGNPYG  217 (229)
Q Consensus       194 ~l~lg~s~~------~~~G~~V~aiG~P~G  217 (229)
                      .++|..+..      ...|.+--.||.-+.
T Consensus        76 ~~~~~~~~~GrAyw~t~tgve~g~ig~~~a  105 (198)
T d1mbma_          76 QLHFAQPTTGPASWCTATGDEEGLLSGEVC  105 (198)
T ss_dssp             BCCBCCCCSEEEEEEETTEEEEEEECSSCE
T ss_pred             ceEeccCCccceEEecccCcccceecCceE
Confidence            888864321      456666677776443