Citrus Sinensis ID: 027025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Secondary Structure (PSIPRED)
cccccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEccccEEEcccccEEEEEcccccccccccccEEEEEEEccccEEEEEccccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
HccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
Flexible Loop (DISEMBL)
MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Low Complexity Region (SEG)
MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered region (IsUnstruct)
*******YLGKLRSNFLGTKFIVYDG**********************VSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VA*TQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
Disordered Region (DISOPRED)
******TYLGKLRSNFLGTKFIVYDGQPPHA**************************YSVAHISYELNVLGSRGPRR********************************************************QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE**PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISEMBL)
********LGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Disordered Region (DISPRO)
*****STYLGKLRSNFLGTKFIVYDGQPPHA**********RLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI****V***************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q8VY21	406	Tubby-like F-box protein	yes	no	1.0	0.564	0.795	1e-99
Q10LG8	403	Tubby-like F-box protein	no	no	0.995	0.565	0.746	2e-99
Q8H485	406	Tubby-like F-box protein	no	no	0.995	0.561	0.698	1e-92
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.986	0.528	0.603	2e-75
Q75HX5	445	Tubby-like F-box protein	no	no	1.0	0.514	0.564	1e-73
Q2QXB2	445	Tubby-like F-box protein	no	no	0.995	0.512	0.544	1e-72
Q9FRH7	445	Tubby-like F-box protein	no	no	1.0	0.514	0.549	2e-72
Q9SQU1	380	Tubby-like F-box protein	no	no	0.947	0.571	0.625	3e-72
Q7XSV4	462	Tubby-like F-box protein	no	no	1.0	0.495	0.510	2e-70
Q8LJA9	448	Tubby-like F-box protein	no	no	0.991	0.506	0.535	4e-70

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  362 bits (929), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/230 (79%), Positives = 204/230 (88%), Gaps = 1/230 (0%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +S+GS+TY+GKLRSNFLGTKF VYD QP + G ++TR+RS+RL +LKQVSPRIP GNY V
Sbjct: 177 VSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPV 236

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYELNVLGSRGPRRMQCVMD+IPASA+E GG APTQTE + SN DSFPS  FFRSKS
Sbjct: 237 AHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKS 296

Query: 121 NRSEKFLSGP-LACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
            R+E   SGP  A QK+G LVL+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVA+PEN
Sbjct: 297 IRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPEN 356

Query: 180 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           GPAG EHE +ILQFGKVGKD+FTMDY+YPISAFQAF ICLSSFDTKIACE
Sbjct: 357 GPAGPEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)

>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1

 Score =  362 bits (928), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/229 (74%), Positives = 193/229 (84%), Gaps = 1/229 (0%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGS+TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V
Sbjct: 176 MSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPV 235

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           +HISYELNVLG+RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI FFRSKS
Sbjct: 236 SHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKS 295

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
            R +   S  L+ QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENG
Sbjct: 296 ARIDSATS-QLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENG 354

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           P   E +K+ILQFGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 355 PTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1

 Score =  338 bits (868), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 183/229 (79%), Gaps = 1/229 (0%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +SK + +Y+GKLRSNFLGTKF +YD  PP+AG  +++ +S R+     +SPRIP GNY V
Sbjct: 179 ISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISKGQSARVIGSNHLSPRIPAGNYPV 238

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           +HISYELNVLGSRGPRRM C MDSIP SAIE GG APTQTEF  S  +SF SIPFF+SKS
Sbjct: 239 SHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKS 298

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
            R+    +  L  Q    LVL+NK+PRWHE LQCWCLNFHGRVTVASVKNFQLVAS E+ 
Sbjct: 299 VRANNS-TASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDESN 357

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           P   EH+ +ILQFGKVGKD+FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 358 PTNQEHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/237 (60%), Positives = 169/237 (71%), Gaps = 11/237 (4%)

Query: 2   SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVA 61
           S  SSTY+GKL+ NFLGTKF ++D QPP     +  +R ++  + KQVSPR+P GNY+VA
Sbjct: 194 SLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSK-RHFKQVSPRLPLGNYNVA 252

Query: 62  HISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSI-------P 114
            +SYEL VL +RGPRRMQC M SIPA  I+ GG APT T  + S  +  P++       P
Sbjct: 253 TVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKGKEP 312

Query: 115 FFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV 174
                S      LSGP+ C  +  LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNFQLV
Sbjct: 313 AIEFSSTSLSADLSGPV-CTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLV 371

Query: 175 AS--PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           AS  P  G    E EK+ILQFGK+GKD+FTMDYRYP+SAFQAFAICL+SFDTK ACE
Sbjct: 372 ASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 428

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1

 Score =  275 bits (704), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/262 (56%), Positives = 180/262 (68%), Gaps = 33/262 (12%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMT-RSRSTRLANLKQVSPRIPFGNYS 59
           +S+ SSTY+GKLRSNFLGTKFI+YD QP + GA +    RS+R  N K+VSP++P G+Y+
Sbjct: 184 ISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSGSYN 243

Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFFR 117
           +A ++YELNVLG+RGPRRM CVM SIPAS++E GG+ P Q E +   A  +SF S   F 
Sbjct: 244 IAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFS 303

Query: 118 SKS--NRS--------------EKFLSGPLACQKDGA-----LVLRNKAPRWHEQLQCWC 156
             S  +RS                   G +   ++G      LVLRNKAPRWHEQLQCWC
Sbjct: 304 KSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWC 363

Query: 157 LNFHGRVTVASVKNFQLV---------ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRY 207
           LNF GRVT+ASVKNFQL+         A   + PA  E +KIILQFGKV KD+FTMDYRY
Sbjct: 364 LNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDYRY 423

Query: 208 PISAFQAFAICLSSFDTKIACE 229
           P+SAFQAFAICLSSFDTK+ACE
Sbjct: 424 PLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1

 Score =  272 bits (696), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 181/261 (69%), Gaps = 33/261 (12%)

Query: 2   SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRS-RSTRLANLKQVSPRIPFGNYSV 60
           S+ S+ Y+GKLRSN LGTKF++YD QPP   A +++S +++R    ++VSP+ P   YS+
Sbjct: 185 SRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSI 244

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFFRS 118
           A +SYELNVLG+RGPRRM CVM SIPAS++E+GG  P Q + + + +  +SF SI F +S
Sbjct: 245 AQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKS 304

Query: 119 K-SNRSEKFLS---------GPLAC---------QKDGALVLRNKAPRWHEQLQCWCLNF 159
              +RS +F S         GP+            K+  L+LRNKAPRWHEQLQCWCLNF
Sbjct: 305 SIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNF 364

Query: 160 HGRVTVASVKNFQLVASPENGPAGL-----------EHEKIILQFGKVGKDLFTMDYRYP 208
            GRVTVASVKNFQLVA+ +                 +H+K+ILQFGKV KD+FTMDYRYP
Sbjct: 365 KGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYP 424

Query: 209 ISAFQAFAICLSSFDTKIACE 229
           +SAFQAFAICLSSFDTK+ACE
Sbjct: 425 LSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1

 Score =  271 bits (693), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/262 (54%), Positives = 179/262 (68%), Gaps = 33/262 (12%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPP---HAGAKMTRSRSTRLANLKQVSPRIPFGN 57
           +S+ S++YLGKLRSNFLGTKF+VYD QPP    + A +T   S    + ++VSP++P G+
Sbjct: 184 ISRSSNSYLGKLRSNFLGTKFLVYDTQPPPNTSSSALITDRTSRSRFHSRRVSPKVPSGS 243

Query: 58  YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFL----FSNADSFPSI 113
           Y++A I+YELNVLG+RGPRRM C+M+SIP S++E GG  P Q E L    +S  DSF S 
Sbjct: 244 YNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSN 303

Query: 114 PFF-------RSKSNRSEKFLSGPLACQKDGA------LVLRNKAPRWHEQLQCWCLNFH 160
             F       RS    S +F    ++C  +        L+L+NK PRWHEQLQCWCLNF 
Sbjct: 304 ISFSKSSFDHRSLDFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFR 363

Query: 161 GRVTVASVKNFQLVASPENGPAGL-------------EHEKIILQFGKVGKDLFTMDYRY 207
           GRVTVASVKNFQLVA+ +  P G              E +K+ILQFGKVGKD+FTMDYRY
Sbjct: 364 GRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRY 423

Query: 208 PISAFQAFAICLSSFDTKIACE 229
           P+SAFQAFAICLSSFDTK+ACE
Sbjct: 424 PLSAFQAFAICLSSFDTKLACE 445

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1

 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 147/235 (62%), Positives = 173/235 (73%), Gaps = 18/235 (7%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +SK S+ YLG++RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +
Sbjct: 158 ISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPI 213

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYELNVLGSRGPRRM+C+MD+IP S +ES GV  + +   FS+     S P FRS  
Sbjct: 214 AHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSR----SSPVFRS-- 267

Query: 121 NRSEKFLSGPLACQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV 174
             S+   S   +C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLV
Sbjct: 268 -HSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLV 326

Query: 175 ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           A   +  AG   E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct: 327 AV-SDCEAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1

 Score =  265 bits (677), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/282 (51%), Positives = 180/282 (63%), Gaps = 53/282 (18%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKM-TRSRSTRLANLKQVSPRIPFGNYS 59
           +S+ SS Y+GKLRSNFLGTKFI+YD QPP+    + ++ R++R  + ++VSP++P G Y 
Sbjct: 181 ISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKVPTGCYP 240

Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSN--ADSFPSIPFFR 117
           +  ++YELNVLG+RGPRRMQC M SIPASA+E GG+ P Q + L      +SF S+    
Sbjct: 241 IVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSF 300

Query: 118 SK-----------SNRSEKFLSGPLACQ----------KDGALVLRNKAPRWHEQLQCWC 156
           SK           S+R  +F  G L  Q          K+  LVLRNKAPRWHEQLQCWC
Sbjct: 301 SKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWC 360

Query: 157 LNFHGRVTVASVKNFQLVAS---PENGPAG--------------------------LEHE 187
           LNF GRVTVASVKNFQL+A+   P +G A                             H+
Sbjct: 361 LNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSNHD 420

Query: 188 KIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
            +ILQFGKV KD+FTMDYRYP+SAFQAFAICL+SFDTK+ACE
Sbjct: 421 TVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 178/267 (66%), Gaps = 40/267 (14%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTR-SRSTRLANLKQVSPRIPFGNYS 59
           +S+ S T +GKLRSNFLGTKFI+YD QPP+ GA +    R+++  N  +VSP++P   Y+
Sbjct: 184 ISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSVTYN 243

Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA--DSFPSIPFF- 116
           +A +SYELNVLG+RGPRRM+C+M SIPAS++E GG+ P Q E +   A  DSF S   F 
Sbjct: 244 IAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFS 303

Query: 117 ---RSKSNRSEKFL--------------SGPLACQKDGA------LVLRNKAPRWHEQLQ 153
              RS ++ S+  +              SG +    D        LVLRNK PRWHEQLQ
Sbjct: 304 QSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQ 363

Query: 154 CWCLNFHGRVTVASVKNFQLV-----------ASPENGPAGLEHEKIILQFGKVGKDLFT 202
           CWCLNF GRVT+ASVKNFQLV              + GPA  + EK+ILQFGKV +D+FT
Sbjct: 364 CWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGPA--DPEKVILQFGKVARDMFT 421

Query: 203 MDYRYPISAFQAFAICLSSFDTKIACE 229
           MDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 422 MDYRYPLSAFQAFAICLSSFDTKLACE 448

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
255551637	390	phosphoric diester hydrolase, putative [	1.0	0.587	0.847	1e-114
356549056	389	PREDICTED: tubby-like F-box protein 6-li	1.0	0.588	0.838	1e-112
356555565	385	PREDICTED: tubby-like F-box protein 6-li	1.0	0.594	0.838	1e-112
297736916	350	unnamed protein product [Vitis vinifera]	1.0	0.654	0.847	1e-112
225432392	374	PREDICTED: tubby-like F-box protein 6-li	1.0	0.612	0.847	1e-111
224107205	395	f-box family protein [Populus trichocarp	1.0	0.579	0.840	1e-111
118486104	392	unknown [Populus trichocarpa]	1.0	0.584	0.829	1e-110
302399101	392	TLP domain class transcription factor [M	1.0	0.584	0.834	1e-110
94442918	222	tubby protein [Platanus x acerifolia]	0.965	0.995	0.851	1e-108
357447461	393	Tubby-like F-box protein [Medicago trunc	1.0	0.582	0.822	1e-108

>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 209/229 (91%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGSSTY+GKLRSNFLGTKF V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +
Sbjct: 162 MSKGSSTYVGKLRSNFLGTKFTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPI 221

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AH+SYELNVLGSRGPRRMQCVMD+IPA++I  GG APTQTEF   + D  PS+PFFRSKS
Sbjct: 222 AHMSYELNVLGSRGPRRMQCVMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPFFRSKS 281

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           N  E FLSGPL+ QKDGAL+L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG
Sbjct: 282 NCVENFLSGPLSSQKDGALILKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 341

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           P G EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 342 PPGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 207/229 (90%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGS++Y+GKLRSNFLGTKF +YD Q PH GAK+ +SRSTRL NLKQVSP++P GNY V
Sbjct: 161 MSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPTGNYPV 220

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYELNVLGSRGPRRM CVMDSIPA+AIE GGVAPTQTEF  +N D FPS PFFRSKS
Sbjct: 221 AHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPFFRSKS 280

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           NR+E  +SGPL  QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS ENG
Sbjct: 281 NRAENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENG 340

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           PAG EH+KIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 341 PAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 207/229 (90%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGS++Y+GKLRSNFLGTKF +YDGQPPHAGAK+ +SRSTRL NLKQVSP++P GNY V
Sbjct: 157 MSKGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKIMKSRSTRLVNLKQVSPKVPTGNYPV 216

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYELNVLGSRGPRRM CVMDSIPA+AIE GGVAP QTEF  +N D FPS PFFRSKS
Sbjct: 217 AHISYELNVLGSRGPRRMHCVMDSIPAAAIEPGGVAPVQTEFSLNNIDMFPSFPFFRSKS 276

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           NR E  +SGPL  QKDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS EN 
Sbjct: 277 NRVENSVSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENR 336

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           PAG EH+KIILQFGKVGKDLFTMDYR+PISAFQAFAICLSSFDTKIACE
Sbjct: 337 PAGPEHDKIILQFGKVGKDLFTMDYRFPISAFQAFAICLSSFDTKIACE 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736916|emb|CBI26117.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 206/229 (89%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGSSTY+GKLRSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P G+Y V
Sbjct: 122 MSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPV 181

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYE+NVLGSRGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  FFRSKS
Sbjct: 182 AHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKS 241

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           +  E  LS PLA +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE+G
Sbjct: 242 HSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDG 301

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           PAG +HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 302 PAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 206/229 (89%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGSSTY+GKLRSNFLGTKF VYDGQPPH+GAK+ R+RSTRL  LKQVSPR+P G+Y V
Sbjct: 146 MSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPV 205

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYE+NVLGSRGPRRMQC MDSIPASAIE GGV PTQTE   SN D FPS  FFRSKS
Sbjct: 206 AHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKS 265

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           +  E  LS PLA +KDGALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE+G
Sbjct: 266 HSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDG 325

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           PAG +HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 326 PAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/232 (84%), Positives = 210/232 (90%), Gaps = 3/232 (1%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGS+TY GKLRSNFLGTKF V+DGQPPHAGAKMT+S S+RL NLKQVSPR+P GNY V
Sbjct: 164 MSKGSNTYAGKLRSNFLGTKFTVFDGQPPHAGAKMTKSYSSRLVNLKQVSPRVPTGNYPV 223

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A+ISYELNVLGSRGPRRM C+MD+IPA+AIE GGVAPTQTEF   +AD FPS+ FFRSKS
Sbjct: 224 ANISYELNVLGSRGPRRMHCIMDAIPAAAIEPGGVAPTQTEFYHHSADFFPSLLFFRSKS 283

Query: 121 NRSEK---FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
           NR E+   F SGPL+ Q++GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 
Sbjct: 284 NRVERVESFQSGPLSSQREGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASQ 343

Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           ENGPAG EHE IILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 344 ENGPAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/229 (82%), Positives = 206/229 (89%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGS+ Y+GKLRSNFLGTKF V+DGQPPHAGAKMT+SRS+RL NLKQVSPR+P GNY V
Sbjct: 164 MSKGSNAYVGKLRSNFLGTKFTVFDGQPPHAGAKMTKSRSSRLVNLKQVSPRVPTGNYPV 223

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A ISYELNVLGSRGPRRM C+MD+IPASAIE GG+APTQTEF   N D  PS+PFFRSKS
Sbjct: 224 ASISYELNVLGSRGPRRMHCIMDAIPASAIEPGGIAPTQTEFSHHNVDFLPSLPFFRSKS 283

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           +R E F SG L+ Q++ ALVL+NKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV SPENG
Sbjct: 284 SRVESFQSGSLSSQRERALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVVSPENG 343

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           PAG EHE IILQFGKVGKDLFTMDYRYPISAFQAFA+CLSSFDTKIACE
Sbjct: 344 PAGPEHENIILQFGKVGKDLFTMDYRYPISAFQAFALCLSSFDTKIACE 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/229 (83%), Positives = 205/229 (89%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MSKGSS Y+GKLRSNFLGTKF ++DGQP H+GAK+ +SRSTRL NLKQVSPR+P GNY V
Sbjct: 164 MSKGSSYYVGKLRSNFLGTKFTIFDGQPSHSGAKIAKSRSTRLVNLKQVSPRVPAGNYPV 223

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A I YELN+LGSRGPRRMQC MDSIP+S+IE GGVAPTQ EF  SNA+ FPS+ F RSKS
Sbjct: 224 AQIQYELNMLGSRGPRRMQCTMDSIPSSSIEPGGVAPTQAEFSHSNAELFPSLSFNRSKS 283

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           NR E FLSGPLA QKDG LVLRNK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG
Sbjct: 284 NRMESFLSGPLARQKDGVLVLRNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 343

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           P G EHEKIILQFGKVGKD FTMDYRYPISAFQAF+ICLSSFDTKIACE
Sbjct: 344 PPGPEHEKIILQFGKVGKDQFTMDYRYPISAFQAFSICLSSFDTKIACE 392

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94442918|emb|CAJ91134.1| tubby protein [Platanus x acerifolia]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/222 (85%), Positives = 201/222 (90%), Gaps = 1/222 (0%)

Query: 9   LGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELN 68
           +GKLRSNFLGTKF +YDGQPPHAGA +T+SRSTRL  LKQVSPRIP GNYSVAHISYE+N
Sbjct: 1   IGKLRSNFLGTKFTIYDGQPPHAGATVTKSRSTRLVGLKQVSPRIPAGNYSVAHISYEVN 60

Query: 69  VLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLS 128
           VLGSRGPRRMQCVMD+IPASAIE GGVAPTQTE   SNADSFP +PFFRSKS R+E  L 
Sbjct: 61  VLGSRGPRRMQCVMDAIPASAIEPGGVAPTQTELPLSNADSFPLLPFFRSKSTRTENHLQ 120

Query: 129 -GPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHE 187
            GPL  QKDG LVL+NKAPRWHEQLQCWCLNF GRVTVASVKNFQLVASP NGPAG EHE
Sbjct: 121 PGPLVSQKDGVLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASPGNGPAGQEHE 180

Query: 188 KIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           ++ILQFGKVGKDLFTMDY+YPISAFQAFAICLSSFDTKIACE
Sbjct: 181 EVILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFDTKIACE 222

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/231 (82%), Positives = 206/231 (89%), Gaps = 2/231 (0%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           MS+GS+ Y+GKLRSNFLGTKF +YDGQPPHAGAK T+SRSTRL NLKQVSP++P GNY V
Sbjct: 163 MSRGSNNYVGKLRSNFLGTKFTIYDGQPPHAGAKFTKSRSTRLVNLKQVSPKVPTGNYPV 222

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           AHISYELNVLGSRGPRRM CVMDSIP+S+IE GGVAPTQTEF  +N + FP  PFFRSKS
Sbjct: 223 AHISYELNVLGSRGPRRMHCVMDSIPSSSIEPGGVAPTQTEFSLNNIEMFPLFPFFRSKS 282

Query: 121 NR-SEKFLSGPLAC-QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE 178
           NR  E  LSGPL   +KDG LVL+NKAPRWHEQLQCWCLNFHGRVT+ASVKNFQLVAS E
Sbjct: 283 NRVVENSLSGPLVGDKKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAE 342

Query: 179 NGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
           NG AG EH+KIILQFGKVGKDLFTMD+RYPISAFQAFAICLSSFDTKIACE
Sbjct: 343 NGTAGPEHDKIILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE 393

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.947	0.571	0.625	2.1e-68
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.397	0.204	0.721	9.8e-68
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.489	0.246	0.508	5.2e-65
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.951	0.560	0.594	3.7e-64
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.759	0.405	0.530	1.6e-63
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.414	0.250	0.717	2.9e-60
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.951	0.553	0.554	6.4e-60
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.925	0.513	0.553	5.7e-59
UNIPROTKB|B0WI30	422	king-tubby2 "Protein king tubb	0.462	0.251	0.512	5.4e-34
UNIPROTKB|B0XFQ9	427	king-tubby1 "Protein king tubb	0.462	0.248	0.512	7e-34

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 147/235 (62%), Positives = 173/235 (73%)

Query:     1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
             +SK S+ YLG++RSNFLGTKF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +
Sbjct:   158 ISKRSNAYLGRMRSNFLGTKFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPI 213

Query:    61 AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
             AHISYELNVLGSRGPRRM+C+MD+IP S +ES GV  + +   FS+  S    P FRS  
Sbjct:   214 AHISYELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRS-- 267

Query:   121 NRSEKFLSGPLACQKDG------ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV 174
               S+   S   +C   G       LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLV
Sbjct:   268 -HSKPLRSNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLV 326

Query:   175 ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             A  +   AG   E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   327 AVSDC-EAGQTSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
 Identities = 75/104 (72%), Positives = 84/104 (80%)

Query:   139 LVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS-------------PENGPAGLE 185
             L+L+NK PRWHEQLQCWCLNF GRVTVASVKNFQLVA+             P + PA  E
Sbjct:   342 LILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPE 401

Query:   186 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
              +K+ILQFGKVGKD+FTMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct:   402 QDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 5.2e-65, Sum P(3) = 5.2e-65
 Identities = 61/120 (50%), Positives = 83/120 (69%)

Query:     1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPH----AGAKMTRSRSTRLANLKQVSPRIPFG 56
             +S+ S+TY+GK+RSNFLGTKFI+YD QP +    A A      S R  + K+VSP++P G
Sbjct:   182 ISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYS-KRVSPKVPSG 240

Query:    57 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNA---DSFPSI 113
             +Y +A +SYELNVLG+RGPRRM C M+SIPAS++  GG  P Q + +   +   +SF SI
Sbjct:   241 SYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSI 300

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 141/237 (59%), Positives = 170/237 (71%)

Query:     1 MSKGSSTYLGKLRSNFLGTKFIVYDGQ--PPHAGAKMTRSRSTRLANLKQVSPRIPFGNY 58
             MS+ S  Y+GK+RSNFLGTKF V+DG   P    AK+ +SRS    N  +VS ++P G+Y
Sbjct:   164 MSRRSQAYVGKVRSNFLGTKFTVFDGNLLPSTGAAKLRKSRSY---NPAKVSAKVPLGSY 220

Query:    59 SVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRS 118
              VAHI+YELNVLGSRGPR+MQC+MD+IP S +E  GVA   +EF      S  ++   +S
Sbjct:   221 PVAHITYELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTRS--TLSRSQS 278

Query:   119 KSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE 178
             K  RS    S  L   K+  LVL NK PRWHEQL+CWCLNFHGRVTVASVKNFQLVA+  
Sbjct:   279 KPLRSS---SSHL---KETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGA 332

Query:   179 NGPAGL------EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             +  +G       + E+IILQFGKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   333 SCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 389

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 95/179 (53%), Positives = 126/179 (70%)

Query:     1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAK-MTRSRSTRLANLKQVSPRIPFGNYS 59
             +S+ SSTY+GKL+SNFLGTKFIVYD  P +  ++ ++    +R  N K+VSP++P G+Y+
Sbjct:   180 ISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPNRSRSFNSKKVSPKVPSGSYN 239

Query:    60 VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNAD-SFPSIPFFRS 118
             +A ++YELN+LG+RGPRRM C+M SIP+ A+E GG  P+Q EFL  + D SF SI    S
Sbjct:   240 IAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIG--SS 297

Query:   119 KS-NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 176
             K  N S  F        K   LVL+ K PRW + L+CWCLNF GRVTVASVKNFQL+++
Sbjct:   298 KIVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSA 356

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 71/99 (71%), Positives = 83/99 (83%)

Query:   135 KDGA--LVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG-PAGL-EHEKII 190
             KDG+   +L+NKAPRWHE LQCWCLNFHGRVTVASVKNFQLVA+ +   P+G  + E ++
Sbjct:   281 KDGSSLTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVL 340

Query:   191 LQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             LQFGKVG D FTMDYR P+SAFQAFAICL+SF TK+ACE
Sbjct:   341 LQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 128/231 (55%), Positives = 166/231 (71%)

Query:     2 SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVA 61
             S+ SSTY+GKLRS FLGTKF +YD Q   + A+   +R  RL + KQ +P++P  + +V 
Sbjct:   173 SRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQAQPNR--RL-HPKQAAPKLPTNSSTVG 229

Query:    62 HISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSN 121
             +I+YELNVL +RGPRRM C MDSIP S++ +    P+  + +     S PS P  + ++ 
Sbjct:   230 NITYELNVLRTRGPRRMHCAMDSIPLSSVIA---EPSVVQGIEEEVSSSPS-P--KGETI 283

Query:   122 RSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPE--- 178
              ++K +       +D  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA  +   
Sbjct:   284 TTDKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASL 343

Query:   179 NGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             + P   EHE++ILQFGK+GKD+FTMDYRYP+SAFQAFAIC+SSFDTK ACE
Sbjct:   344 DAPPE-EHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 130/235 (55%), Positives = 155/235 (65%)

Query:     2 SKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN--YS 59
             S+ SS Y+GKLRSNFLGTKF VY+ QPP    K+  S         QVSP +   +  Y+
Sbjct:   195 SRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPSM--------QVSPWVSSSSSSYN 246

Query:    60 VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSK 119
             +A I YELNVL +RGPRRMQC+M SIP SAI+ GG   + TEF          +  F S 
Sbjct:   247 IASILYELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQGKKKKKPLMDFCSG 306

Query:   120 SNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
             +   E  +  PL        +L+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+   
Sbjct:   307 NLGGESVIKEPL--------ILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAE 358

Query:   180 GPAGL-----EHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                 +     E +++ILQFGK+GKD+FTMDYRYPISAFQAFAICLSSFDTK  CE
Sbjct:   359 AGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 413

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

UNIPROTKB|B0WI30 king-tubby2 "Protein king tubby 2" [Culex quinquefasciatus (taxid:7176)]

 Score = 271 (100.5 bits), Expect = 5.4e-34, Sum P(3) = 5.4e-34
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:   117 RSKSNRSEKFLSGPLACQK----DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 172
             R K N S+    G L   K    D  + L NK P W+++ Q + LNFHGRVT ASVKNFQ
Sbjct:   313 RVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQ 372

Query:   173 LVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             LV   ++ P     + I++QFG+   D+FTMD+RYP+ AFQAFAI LSSFD K+ACE
Sbjct:   373 LVH--DSDP-----DYIVMQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 422

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|B0XFQ9 king-tubby1 "Protein king tubby 1" [Culex quinquefasciatus (taxid:7176)]

 Score = 271 (100.5 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:   117 RSKSNRSEKFLSGPLACQK----DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQ 172
             R K N S+    G L   K    D  + L NK P W+++ Q + LNFHGRVT ASVKNFQ
Sbjct:   318 RVKINSSDSHGQGLLDSWKSKHMDNVVELHNKTPIWNDETQSYVLNFHGRVTQASVKNFQ 377

Query:   173 LVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
             LV   ++ P     + I++QFG+   D+FTMD+RYP+ AFQAFAI LSSFD K+ACE
Sbjct:   378 LVH--DSDP-----DYIVMQFGRTSDDIFTMDFRYPLCAFQAFAIALSSFDGKLACE 427

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY21	TLP3_ARATH	No assigned EC number	0.7956	1.0	0.5640	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_VIII1741 SubName- Full=Putative uncharacterized protein; (392 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam01167	243	pfam01167, Tub, Tub family	8e-91

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  266 bits (683), Expect = 8e-91
 Identities = 101/223 (45%), Positives = 127/223 (56%), Gaps = 43/223 (19%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G   +
Sbjct: 64  LSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGRQEL 110

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A + YE NVLG RGPR+M  +M  IP+S        P Q                     
Sbjct: 111 AAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPL------------------- 147

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           N  E  LS      K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V +    
Sbjct: 148 NDQESLLSRWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS--- 204

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 223
               + + I+LQFG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 205 ----DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2503	565	consensus Tubby superfamily protein TULP4 [General	99.82
PF12043	346	DUF3527: Domain of unknown function (DUF3527); Int	97.24

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=1.4e-79  Score=560.61  Aligned_cols=185  Identities=61%  Similarity=0.977  Sum_probs=163.9

Q ss_pred             CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027025            1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC   80 (229)
Q Consensus         1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v   80 (229)
                      |||++++||||||||||||||||||+|.++...          ++      ++|.+++|||+|+||+||||+||||||+|
T Consensus       171 lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~r~----------~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~  234 (355)
T KOG2502|consen  171 LSRGSESYVGKLRSNLLGTKFTVYDNGVNPSRR----------FN------KVPSGRQELAAVIYETNVLGFRGPRRMTV  234 (355)
T ss_pred             cccCccceeeeeecccccceEEEecCCCCcccc----------cc------cCCcccceeeEEEEeeccccccCCceeEE
Confidence            699999999999999999999999998665322          22      57889999999999999999999999999


Q ss_pred             eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027025           81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH  160 (229)
Q Consensus        81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~  160 (229)
                      +||.||.++  ++|++|.|++..+.                   +++.++++..++++++|+||.|+|||++||||||||
T Consensus       235 im~~i~~s~--~~~~v~~q~~~~~~-------------------~~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~  293 (355)
T KOG2502|consen  235 IMPGISPSA--PGGRVPVQPENDHP-------------------SLLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFH  293 (355)
T ss_pred             eccCCCCCC--CCCccccccccccc-------------------chhhhccccCcccceEeecCCCccccccceEEEecC
Confidence            999999987  88898888664432                   112223334468999999999999999999999999


Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  229 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd~K~~Ce  229 (229)
                      ||||+||||||||||..       ++++|||||||||||+|||||+||||+||||||||||||+|||||
T Consensus       294 GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  294 GRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             CeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            99999999999999975       579999999999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=2.5e-67  Score=465.89  Aligned_cols=185  Identities=57%  Similarity=0.923  Sum_probs=136.4

Q ss_pred             CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027025            1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC   80 (229)
Q Consensus         1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v   80 (229)
                      +||+|++|||||||||+||+|+|||+|.+++.+..             .+|..+..|+|||+|.||+||||++|||||+|
T Consensus        62 lsr~s~~yvGKLrsNf~GT~F~iyD~g~~~~~~~~-------------~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v  128 (246)
T PF01167_consen   62 LSRSSNNYVGKLRSNFLGTEFTIYDNGPNPKKSKS-------------ISPREPQIRRELAAVSYETNVLGSRGPRKMTV  128 (246)
T ss_dssp             HCTT---ESEEEEE-TTSSEEEEEESSB-CCCSTC-------------CTSCCSSB--EEEEEEEEE-SSSTTSSEEEEE
T ss_pred             cccCCCceeeeeccccceeEEEEECCCCCCccccc-------------cCcCcCcCcceEEEEEEEeccccccCCcEEEE
Confidence            58999999999999999999999999998866531             24667778999999999999999999999999


Q ss_pred             eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027025           81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH  160 (229)
Q Consensus        81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~  160 (229)
                      +||+|+....++++..|.++.     .             ...++++........+++++|+||+|+||+++++|+|||+
T Consensus       129 ~ip~i~~~~~~~~~~~~~~p~-----~-------------~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~  190 (246)
T PF01167_consen  129 VIPSIPSSGQESGGRVPFQPL-----N-------------QEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFN  190 (246)
T ss_dssp             EEE-B-TTS-----B-----S-----S--------------CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEET
T ss_pred             EecCCCccccccceeeeeecc-----c-------------cccccccccccccCCcceEEEecCCCcEeccCCeEEeccC
Confidence            999998877666655543311     0             0111111222234567999999999999999999999999


Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  223 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd  223 (229)
                      |||++|||||||||+++       +++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus       191 gRv~~~SvKNFql~~~~-------~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd  246 (246)
T PF01167_consen  191 GRVTVASVKNFQLVHPS-------DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD  246 (246)
T ss_dssp             TSECC-BTTEEEEEBTT-------BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred             CeEeccccceeEEEccC-------CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence            99999999999999974       678999999999999999999999999999999999997

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]

Probab=99.82  E-value=4.4e-21  Score=182.31  Aligned_cols=78  Identities=42%  Similarity=0.730  Sum_probs=72.9

Q ss_pred             CceEEEeeCCCccccCCceEEeccCCcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHH
Q 027025          136 DGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAF  215 (229)
Q Consensus       136 ~~~~~l~nk~P~w~~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAF  215 (229)
                      .++.++.||+|-|||..|-|+|||.||||+.|.||||+-..          .+.|||||+|+.+.|++||+||+|+.|||
T Consensus       484 ~R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaF  553 (565)
T KOG2503|consen  484 ARCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAF  553 (565)
T ss_pred             ceEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHH
Confidence            35679999999999999999999999999999999999763          57899999999999999999999999999


Q ss_pred             HHHHHhCc
Q 027025          216 AICLSSFD  223 (229)
Q Consensus       216 aiaLssfd  223 (229)
                      |.||++.-
T Consensus       554 avalanvt  561 (565)
T KOG2503|consen  554 AVALANVT  561 (565)
T ss_pred             HHHHhhhh
Confidence            99999754

>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised

Probab=97.24  E-value=0.00041  Score=65.02  Aligned_cols=58  Identities=21%  Similarity=0.452  Sum_probs=47.1

Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCcc
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDT  224 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd~  224 (229)
                      .+...+.-+=|.|....      ..++..+|-+--+.++.|.+||+..||++|||+||+|-.+.
T Consensus       287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~  344 (346)
T PF12043_consen  287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS  344 (346)
T ss_pred             cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence            45555577778888763      23344899999999999999999999999999999987664

This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		1e-36
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		3e-36
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		7e-36
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		2e-35
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		1e-32

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
           +S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q           
Sbjct: 88  LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 133
Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
           +A + YE NVLG +GPR+M  +   +P   +  E   + P                    
Sbjct: 134 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP-------------------- 170
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
              N  E  L+       +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++   
Sbjct: 171 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-- 226
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 227 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
           +S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q           
Sbjct: 80  LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 125
Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
           +A + YE NVLG +GPR+M  +   +P   +  E   + P                    
Sbjct: 126 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP-------------------- 162
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
              N  E  L+       +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++   
Sbjct: 163 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIH-- 218
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 219 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 49/232 (21%)
Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
           +S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q           
Sbjct: 80  LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ----------E 125
Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSIPFFR 117
           +A + YE NVLG +GPR+M  +   +P   +  E   + P                    
Sbjct: 126 LAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP-------------------- 162
Query: 118 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 177
              N  E  L+       +  + L+NK P W++  + + LNFHGRVT ASVKNFQ++   
Sbjct: 163 --RNEHETLLARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVTQASVKNFQIIH-- 218
Query: 178 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 219 -----GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 47/230 (20%)
Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
           +S+G   ++GKLRSN LG +F V+D GQ P  G       ST +A+L+Q           
Sbjct: 93  LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------E 136
Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSK 119
           +A + YE NVLG RGPRRM  +   IP  + E+               +  P  P     
Sbjct: 137 LAAVIYETNVLGFRGPRRMTVI---IPGMSAEN---------------ERVPIRP----- 173
Query: 120 SNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
            N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V + + 
Sbjct: 174 RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD- 232
Query: 180 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                  + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 233 ------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 118/224 (52%), Gaps = 47/224 (20%)
Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYS 59
           +S+G   ++GKLRSN LG +F V+D GQ P  G       ST +A+L+Q           
Sbjct: 69  LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ----------E 112
Query: 60  VAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSK 119
           +A + YE NVLG RGPRRM  +   IP  + E+  V               P  P     
Sbjct: 113 LAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV---------------PIRP----- 149
Query: 120 SNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 179
            N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V + + 
Sbjct: 150 RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD- 208
Query: 180 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 223
                  + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 209 ------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	6e-66
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	2e-62

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  204 bits (519), Expect = 6e-66
 Identities = 82/229 (35%), Positives = 112/229 (48%), Gaps = 45/229 (19%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +S+G   ++GKLRSN LG +F V+D                     +  S  +      +
Sbjct: 93  LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQEL 137

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A + YE NVLG RGPRRM  ++  + A                    +  P  P      
Sbjct: 138 AAVIYETNVLGFRGPRRMTVIIPGMSA------------------ENERVPIRP-----R 174

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
           N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +  
Sbjct: 175 NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-- 232

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                 + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 233 -----PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  194 bits (493), Expect = 2e-62
 Identities = 75/223 (33%), Positives = 109/223 (48%), Gaps = 45/223 (20%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +S+G   ++GKLRSN LG +F V+D                     +  S  +      +
Sbjct: 69  LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQEL 113

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A + YE NVLG RGPRRM  ++  + A           +   +     S   +  +++K+
Sbjct: 114 AAVIYETNVLGFRGPRRMTVIIPGMSA---------ENERVPIRPRNASDGLLVRWQNKT 164

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
                          +  + L NK P W++    + LNF GRVT ASVKNFQ+V + +  
Sbjct: 165 --------------LESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADD-- 208

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 223
                 + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD
Sbjct: 209 -----PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1e-71  Score=499.91  Aligned_cols=184  Identities=43%  Similarity=0.726  Sum_probs=134.5

Q ss_pred             CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027025            1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC   80 (229)
Q Consensus         1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v   80 (229)
                      |||++++|||||||||+||+|+|||+|.+++.+               .||.++..|+|||+|.||+||||++|||+|+|
T Consensus        93 lsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v  157 (276)
T 2fim_A           93 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTV  157 (276)
T ss_dssp             ------CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEE
T ss_pred             cccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEE
Confidence            689999999999999999999999999876432               24566778999999999999999999999999


Q ss_pred             eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027025           81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH  160 (229)
Q Consensus        81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~  160 (229)
                      +||.+.    ++|+..|.+   +..                ..++++.++++...+++++|+||+|+|||++|||||||+
T Consensus       158 ~iP~~~----~~~~~~~~~---p~~----------------~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~  214 (276)
T 2fim_A          158 IIPGMS----AENERVPIR---PRN----------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQ  214 (276)
T ss_dssp             EEECBC----TTSCBCCCC---CSS----------------TTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred             EecCcc----cCCCEeccc---CCC----------------cccccchhhhccCCcceEeeeccCCcccccCCEEEEecC
Confidence            998642    234333221   111                112222233344567899999999999999999999999


Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  229 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd~K~~Ce  229 (229)
                      ||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||+|+|||
T Consensus       215 GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          215 GRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             TCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             CeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99999999999999974       578999999999999999999999999999999999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=1.2e-68  Score=473.24  Aligned_cols=178  Identities=42%  Similarity=0.709  Sum_probs=140.5

Q ss_pred             CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027025            1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC   80 (229)
Q Consensus         1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v   80 (229)
                      |||++++|||||||||+||+|+|||+|.+++.+               .||.++.+|+|||+|.||+||||++|||+|+|
T Consensus        69 lsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v  133 (246)
T 3c5n_A           69 LSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTV  133 (246)
T ss_dssp             ------CEEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEE
T ss_pred             cccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEE
Confidence            689999999999999999999999999876432               24566778999999999999999999999999


Q ss_pred             eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027025           81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH  160 (229)
Q Consensus        81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~  160 (229)
                      +||.+.    ++|+..|.+   +..                ..|+++.++++...+++++|+||+|+|||++|||||||+
T Consensus       134 ~iP~~~----~~~~~~~~~---p~~----------------~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~  190 (246)
T 3c5n_A          134 IIPGMS----AENERVPIR---PRN----------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQ  190 (246)
T ss_dssp             EEECBC----TTSCBCCCC---CSS----------------TTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCT
T ss_pred             EecCcc----cCCCEeecc---CCC----------------ccccchhhhhccCCcceEEEeccCCcccccCCEEEEecC
Confidence            998642    234333221   111                112222233344567899999999999999999999999


Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCc
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD  223 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd  223 (229)
                      ||||+|||||||||+++       ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus       191 GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD  246 (246)
T 3c5n_A          191 GRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD  246 (246)
T ss_dssp             TSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred             CeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence            99999999999999974       578999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-74

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  224 bits (573), Expect = 1e-74
 Identities = 80/229 (34%), Positives = 115/229 (50%), Gaps = 43/229 (18%)

Query: 1   MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSV 60
           +S+G  +Y+GKLRSN +GTKF VYD       A                +         +
Sbjct: 80  LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS-------------SSTLESGTLRQEL 126

Query: 61  AHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKS 120
           A + YE NVLG +GPR+M  ++  +             + E L +           R ++
Sbjct: 127 AAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLA-----------RWQN 175

Query: 121 NRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENG 180
                          +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ++   +  
Sbjct: 176 K------------NTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGND-- 221

Query: 181 PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 229
                 + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 222 -----PDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-67  Score=469.19  Aligned_cols=186  Identities=42%  Similarity=0.726  Sum_probs=153.2

Q ss_pred             CCCCCCceEEEeccccccceEEEecCCCCCCCCccccccccccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEE
Q 027025            1 MSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC   80 (229)
Q Consensus         1 ~Sr~s~~yvGKLRSNflGTkF~iYD~g~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ela~I~Ye~NvLg~rGPRkM~v   80 (229)
                      |||+|++|||||||||+||+|+|||+|.+++.+...             +++..+.|+|||+|.||+||||+||||+|+|
T Consensus        80 ~sr~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~  146 (265)
T d1c8za_          80 LSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSV  146 (265)
T ss_dssp             HTTTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEE
T ss_pred             hcccccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEE
Confidence            589999999999999999999999999887655321             1122345789999999999999999999999


Q ss_pred             eeccCCcccccCCCCCCccceeecCCCCCCCCcccccccCcccccccCCccccCCCceEEEeeCCCccccCCceEEeccC
Q 027025           81 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFH  160 (229)
Q Consensus        81 iip~ip~~~~~~gg~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~l~nk~P~w~~~~~~y~LnF~  160 (229)
                      +||+++.....    .    .. .+..+              .++++..+.+...+++++|+||+|+||+++++|+|||+
T Consensus       147 ~ip~~~~~~~~----~----~~-~p~~~--------------~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~  203 (265)
T d1c8za_         147 IVPGMNMVHER----V----CI-RPRNE--------------HETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFH  203 (265)
T ss_dssp             EEECBCTTSCB----C----CC-CCSST--------------TSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEET
T ss_pred             EecCCCccccc----c----cc-CCCCc--------------chhhhHHhhccCcccceEEecCCCeeeccCCEEEeccC
Confidence            99987643111    1    00 01111              12222223344568999999999999999999999999


Q ss_pred             CcccccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 027025          161 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  229 (229)
Q Consensus       161 GRv~~aSvKNFQLv~~~~~~~~~~~~~~ivlqfGKv~~~~F~lD~~~PlS~~QAFaiaLssfd~K~~Ce  229 (229)
                      |||++|||||||||+++       +++++|||||||++++|+|||+|||||+||||||||+||+|+|||
T Consensus       204 gRv~~~SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         204 GRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             TEEEECBTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             CEEeccccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            99999999999999864       578899999999999999999999999999999999999999998