Citrus Sinensis ID: 027098

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRRMF
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccEEEcccEEEEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEcccccccccEEEEEccccEEEEEEEccEEEEEEEcccccccccccccccccccccccccc
cccHHHHccccHHHHcccccccccHHHHcccccccccccccccHHHHHHccccccccEEEEccccccccHHHHHHHHHcccccccccHHEEccccEEEEEccccccccHHHccccccccccEEEEccEEcccccccccEEEccccccccccccccccccEEEEEEEEcccHHHccccEEEEEccEcEEEEEEEcccEEEccccccccccccccEcccHHccccccEEc
maslvgqlpfalenangykvwedpsfikwrkrdphvtlrchdsvegSLKYWYERNKvdisvsnsavwdddAVHEALTSAAfwtnglpfvkslsghwkfflassppdvplnfhkssfqdskweaipvpsnwqmhgfdrpiytnvvypfpldppnvpaenptgcyrtyfhipkewqgrRILLHFEAVDSAFCAwingvpvgyRSVRIVGYQRSLKFQITVILMVQTRRMF
MASLVGQLPfalenangykvwedpsfikwrkrdphvtlrchdsvegslkYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIvgyqrslkfqiTVILMVQTRRMF
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRRMF
*****GQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQ*****
**************ANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRR**
MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRRMF
*ASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRRMF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMVQTRRMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q56307 1084 Beta-galactosidase OS=The yes no 0.482 0.101 0.513 5e-29
A1SWB8 1035 Beta-galactosidase OS=Psy yes no 0.535 0.117 0.483 1e-27
Q7MG04 1031 Beta-galactosidase OS=Vib yes no 0.478 0.105 0.513 2e-27
Q8D4H3 1032 Beta-galactosidase OS=Vib yes no 0.478 0.105 0.495 1e-26
A5F5U6 1024 Beta-galactosidase OS=Vib yes no 0.640 0.142 0.372 1e-26
P81650 1039 Beta-galactosidase OS=Pse yes no 0.583 0.128 0.471 2e-26
B4S2K9 1041 Beta-galactosidase OS=Alt yes no 0.478 0.104 0.508 6e-26
Q6LL68 1030 Beta-galactosidase OS=Pho yes no 0.486 0.107 0.495 1e-24
A9MQ82 1025 Beta-galactosidase OS=Sal N/A no 0.478 0.106 0.491 8e-24
A4W7D2 1028 Beta-galactosidase OS=Ent yes no 0.789 0.175 0.313 1e-23
>sp|Q56307|BGAL_THEMA Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lacZ PE=3 SV=2 Back     alignment and function desciption
 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 91  SLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLD 150
           SL+G+W+F  A +P +VP +F    F DS W+ I VPSNW+M G+ +PIYTNVVYPF  +
Sbjct: 41  SLNGNWRFLFAKNPFEVPEDFFSEKFDDSNWDEIEVPSNWEMKGYGKPIYTNVVYPFEPN 100

Query: 151 PPNVPA-ENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGY 200
           PP VP  +NPTG YR +  IP++W  + I LHFE V S F  W+NG  +G+
Sbjct: 101 PPFVPKDDNPTGVYRRWIEIPEDWFKKEIFLHFEGVRSFFYLWVNGKKIGF 151

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|A1SWB8|BGAL_PSYIN Beta-galactosidase OS=Psychromonas ingrahamii (strain 37) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q7MG04|BGAL_VIBVY Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q8D4H3|BGAL_VIBVU Beta-galactosidase OS=Vibrio vulnificus (strain CMCP6) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|A5F5U6|BGAL_VIBC3 Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|P81650|BGAL_PSEHA Beta-galactosidase OS=Pseudoalteromonas haloplanktis GN=lacZ PE=1 SV=2 Back     alignment and function description
>sp|B4S2K9|BGAL_ALTMD Beta-galactosidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|Q6LL68|BGAL_PHOPR Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1 Back     alignment and function description
>sp|A9MQ82|BGAL_SALAR Beta-galactosidase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lacZ PE=3 SV=2 Back     alignment and function description
>sp|A4W7D2|BGAL_ENT38 Beta-galactosidase OS=Enterobacter sp. (strain 638) GN=lacZ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
255543993 1110 beta-galactosidase, putative [Ricinus co 0.982 0.201 0.682 4e-88
357515121 1118 Beta Galactosidase-like protein [Medicag 0.864 0.176 0.773 8e-88
356548875 1120 PREDICTED: beta-galactosidase-like [Glyc 0.872 0.177 0.753 1e-87
225465868 1114 PREDICTED: beta-galactosidase isoform 1 0.868 0.177 0.76 7e-87
359495000 1127 PREDICTED: beta-galactosidase [Vitis vin 0.868 0.175 0.713 4e-84
224057302 1110 predicted protein [Populus trichocarpa] 0.868 0.178 0.735 4e-84
449449270 1114 PREDICTED: beta-galactosidase-like [Cucu 0.868 0.177 0.725 1e-83
7258347 1075 beta Galactosidase-like protein [Arabido 0.872 0.185 0.721 6e-83
297820190 1107 hydrolase, hydrolyzing O-glycosyl compou 0.868 0.178 0.725 1e-82
110741846 631 beta Galactosidase - like protein [Arabi 0.868 0.313 0.72 2e-82
>gi|255543993|ref|XP_002513059.1| beta-galactosidase, putative [Ricinus communis] gi|223548070|gb|EEF49562.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 159/233 (68%), Positives = 179/233 (76%), Gaps = 9/233 (3%)

Query: 1   MASLVGQLPFALENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDIS 60
           MASL   +   LE   G+KVWEDPSFIKWRKR+PHVTL CH+SVEGSL+YWY+RNKVD+ 
Sbjct: 1   MASLAANMVSPLET--GHKVWEDPSFIKWRKREPHVTLHCHESVEGSLRYWYQRNKVDVL 58

Query: 61  VSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSK 120
           VS SAVW+DDAV  AL  AAFW   LPFVKS+SG WKFFLA SP  VP+ F++ +FQD +
Sbjct: 59  VSKSAVWNDDAVKAALDCAAFWVKDLPFVKSMSGFWKFFLAPSPTKVPIKFYEPAFQDFE 118

Query: 121 WEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRRILL 180
           W+ +PVPSNWQMHGFDRPIYTNVVYPFPLDPP VP +NPTGCYRTYF IPKEWQGRRILL
Sbjct: 119 WQTLPVPSNWQMHGFDRPIYTNVVYPFPLDPPYVPEDNPTGCYRTYFQIPKEWQGRRILL 178

Query: 181 HFEAVDSAFCAWINGVPVGYR-------SVRIVGYQRSLKFQITVILMVQTRR 226
           HFEAVDSAFCAW+NGVPVGY           I  Y  S     + +L VQ  R
Sbjct: 179 HFEAVDSAFCAWVNGVPVGYSQDSRLPAEFEITEYCYSCDSGKSNVLAVQVIR 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357515121|ref|XP_003627849.1| Beta Galactosidase-like protein [Medicago truncatula] gi|355521871|gb|AET02325.1| Beta Galactosidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548875|ref|XP_003542824.1| PREDICTED: beta-galactosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|225465868|ref|XP_002266400.1| PREDICTED: beta-galactosidase isoform 1 [Vitis vinifera] gi|296090332|emb|CBI40151.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495000|ref|XP_003634896.1| PREDICTED: beta-galactosidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224057302|ref|XP_002299206.1| predicted protein [Populus trichocarpa] gi|222846464|gb|EEE84011.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449449270|ref|XP_004142388.1| PREDICTED: beta-galactosidase-like [Cucumis sativus] gi|449487140|ref|XP_004157508.1| PREDICTED: beta-galactosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|7258347|emb|CAB77564.1| beta Galactosidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820190|ref|XP_002877978.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] gi|297323816|gb|EFH54237.1| hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|110741846|dbj|BAE98865.1| beta Galactosidase - like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
ASPGD|ASPL0000040482 1030 lacD [Emericella nidulans (tax 0.600 0.133 0.411 1.7e-27
UNIPROTKB|Q2KEP6197 MGCH7_ch7g990 "Putative unchar 0.548 0.634 0.427 2.6e-24
ASPGD|ASPL0000047652 1023 lacF [Emericella nidulans (tax 0.530 0.118 0.437 4.2e-24
UNIPROTKB|P00722 1024 lacZ "beta-galactosidase monom 0.482 0.107 0.451 8.1e-23
UNIPROTKB|P06864 1030 ebgA "evolved beta-D-galactosi 0.631 0.139 0.374 9.4e-19
ASPGD|ASPL0000002919 891 lacE [Emericella nidulans (tax 0.723 0.185 0.231 5.3e-05
ASPGD|ASPL0000040482 lacD [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
 Score = 309 (113.8 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 63/153 (41%), Positives = 90/153 (58%)

Query:    62 SNSAVWDDDAVHEA--LTSAAFWTNGLPFVKSLSGHWKFFLASSP---PD-VPLNF---- 111
             S++  W++  V +   L + A+W      +  L+G W F   SSP   P   P       
Sbjct:     5 SSANDWENPRVFQRNRLKARAYWIPETSLL--LNGDWDFNYVSSPLLAPSPTPSRLSGDG 62

Query:   112 --HKSSFQDS-KWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFH 168
                K + QD  +W+ IPVP +WQ+HG+ RP YTNV++PFP+DPP VP+ENPTG Y+  F 
Sbjct:    63 GEEKDAEQDQVEWKPIPVPGHWQLHGYGRPNYTNVIFPFPVDPPRVPSENPTGTYKRSFR 122

Query:   169 IPKEW-QGRRILLHFEAVDSAFCAWINGVPVGY 200
             +P  W +  ++ L F+ VDSA+  W+NGV VGY
Sbjct:   123 VPSTWDRDAQLRLRFDGVDSAYHVWVNGVQVGY 155
GO:0005988 "lactose metabolic process" evidence=IMP;RCA
GO:0004565 "beta-galactosidase activity" evidence=ISS;RCA
GO:0044275 "cellular carbohydrate catabolic process" evidence=ISS
GO:0043169 "cation binding" evidence=IEA
GO:0009341 "beta-galactosidase complex" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
UNIPROTKB|Q2KEP6 MGCH7_ch7g990 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000047652 lacF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P00722 lacZ "beta-galactosidase monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P06864 ebgA "evolved beta-D-galactosidase, alpha subunit; cryptic gene" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
ASPGD|ASPL0000002919 lacE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.23LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
PRK09525 1027 PRK09525, lacZ, beta-D-galactosidase; Reviewed 3e-42
PRK10340 1021 PRK10340, ebgA, cryptic beta-D-galactosidase subun 5e-36
pfam02837160 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases fa 3e-32
COG3250 808 COG3250, LacZ, Beta-galactosidase/beta-glucuronida 9e-23
PRK10150 604 PRK10150, PRK10150, beta-D-glucuronidase; Provisio 2e-05
>gnl|CDD|236548 PRK09525, lacZ, beta-D-galactosidase; Reviewed Back     alignment and domain information 
 Score =  152 bits (385), Expect = 3e-42
 Identities = 56/117 (47%), Positives = 74/117 (63%), Gaps = 7/117 (5%)

Query: 87  PFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYP 146
              +SL+G W+F    +P  VP ++ +    D   + IPVPSNWQ+HG+D PIYTNV YP
Sbjct: 50  QQRQSLNGEWRFSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYP 107

Query: 147 FPLDPPNVPAENPTGCYRTYFHIPKEW--QGR-RILLHFEAVDSAFCAWINGVPVGY 200
            P++PP VP ENPTGCY   F + + W   G+ RI+  F+ V+SAF  W NG  VGY
Sbjct: 108 IPVNPPFVPEENPTGCYSLTFTVDESWLQSGQTRII--FDGVNSAFHLWCNGRWVGY 162

Length = 1027
>gnl|CDD|236673 PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>gnl|CDD|217248 pfam02837, Glyco_hydro_2_N, Glycosyl hydrolases family 2, sugar binding domain Back     alignment and domain information
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236657 PRK10150, PRK10150, beta-D-glucuronidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 100.0
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 100.0
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 99.91
PRK10150 604 beta-D-glucuronidase; Provisional 99.85
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 99.66
KOG2024 297 consensus Beta-Glucuronidase GUSB (glycosylhydrola 98.75
KOG2230 867 consensus Predicted beta-mannosidase [Carbohydrate 98.22
COG3250 808 LacZ Beta-galactosidase/beta-glucuronidase [Carboh 97.16
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 96.5
PLN03059 840 beta-galactosidase; Provisional 94.0
PLN03059 840 beta-galactosidase; Provisional 88.02
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=1.6e-41  Score=345.32  Aligned_cols=166  Identities=36%  Similarity=0.738  Sum_probs=153.4

Q ss_pred             CCCCCCcccccccccCCCCCccccCCHHHHhhhhhhcccccccccCCCcccchhhHHhhhhccccCCCCCceeeccccce
Q 027098           18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWK   97 (228)
Q Consensus        18 ~~~wenp~v~~~n~~~~~a~~~~y~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~W~   97 (228)
                      .++||||+|+++||||+||+|+||+++++|+..                                 ..|+.+++|||.|+
T Consensus        14 ~~~wenp~v~~~nr~~~~a~~~~~~~~~~a~~~---------------------------------~~s~~~~sLnG~W~   60 (1027)
T PRK09525         14 RRDWENPGVTQLNRLPAHPPFASWRNSEAARDD---------------------------------RPSQQRQSLNGEWR   60 (1027)
T ss_pred             cCCccCccccCCCCCCCCCCcCCcCCHHHHhhc---------------------------------cCCcceEecCCCcc
Confidence            468999999999999999999999999988742                                 13568999999999


Q ss_pred             eeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEEEEEEcCCCCCCC-
Q 027098           98 FFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGR-  176 (228)
Q Consensus        98 F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YRr~F~lp~~w~gk-  176 (228)
                      |++.+.+..+|.+|+..++++  |++|.|||+|+++|++.++|+|++|||+.+||+||.+|++|||||+|+||++|.++ 
T Consensus        61 F~~~~~~~~~~~~~~~~~~~~--w~~I~VP~~w~~~G~~~~~y~n~~ypf~~~~p~vp~~n~~gwYrr~F~vp~~w~~~~  138 (1027)
T PRK09525         61 FSYFPAPEAVPESWLECDLPD--ADTIPVPSNWQLHGYDAPIYTNVTYPIPVNPPFVPEENPTGCYSLTFTVDESWLQSG  138 (1027)
T ss_pred             eeECCChhhCcccccccCCCC--CcEeCCCCcHHhcCCCCCccccccCCCCCCCCCCCCcCCeEEEEEEEEeChhhcCCC
Confidence            999999999999999888865  99999999999999999999999999999999999889999999999999999987 


Q ss_pred             eEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098          177 RILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV  222 (228)
Q Consensus       177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~  222 (228)
                      +++|+|+||++.++|||||++||+|+    |.++|+++|||.+|+.
T Consensus       139 rv~L~FeGV~~~a~VwvNG~~VG~~~----g~~~pfefDIT~~l~~  180 (1027)
T PRK09525        139 QTRIIFDGVNSAFHLWCNGRWVGYSQ----DSRLPAEFDLSPFLRA  180 (1027)
T ss_pred             eEEEEECeeccEEEEEECCEEEEeec----CCCceEEEEChhhhcC
Confidence            99999999999999999999999999    5667999999998753

>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
3dym_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 5e-23
1bgm_I 1023 Beta-Galactosidase (Chains I-P) Length = 1023 5e-23
1px3_A 1023 E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 5e-23
1jz7_A 1023 E. Coli (Lacz) Beta-Galactosidase In Complex With G 5e-23
1dp0_A 1023 E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 5e-23
1f49_A 1023 E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained 5e-23
3dyo_A 1023 E. Coli (Lacz) Beta-Galactosidase (H418n) In Comple 5e-23
3czj_A 1023 "e. Coli (Lacz) Beta-Galactosidase (N460t) In Compl 5e-23
3i3b_A 1023 E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex 5e-23
3iaq_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 5e-23
3vd3_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 5e-23
1jz8_A 1023 E. Coli (lacz) Beta-galactosidase (e537q) In Comple 5e-23
1f4a_A 1021 E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained 5e-23
3iap_A 1023 E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 5e-23
3muy_1 1023 E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 5e-23
3sep_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 5e-23
3t2o_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 6e-23
3vda_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 6e-23
3muz_1 1052 E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex 6e-23
3vd5_A 1052 E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 6e-23
3t0a_A 1052 E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 6e-23
3bga_A 1010 Crystal Structure Of Beta-Galactosidase From Bacter 5e-21
1yq2_A 1024 Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoe 5e-20
3dec_A 1000 Crystal Structure Of A Glycosyl Hydrolases Family 2 5e-20
3ob8_A 1032 Structure Of The Beta-Galactosidase From Kluyveromy 1e-10
3gm8_A 801 Crystal Structure Of A Beta-glycosidase From Bacter 2e-05
3k46_A 605 Crystal Structure Of Full-Length E. Coli Beta-Glucu 3e-04
3lpf_A 605 Structure Of E. Coli Beta-Glucuronidase Bound With 3e-04
3k4a_A 605 Crystal Structure Of Selenomethionine Substituted E 3e-04
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e) Length = 1023 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 89  VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 148
           ++SL+G W+F    +P  VP ++ +    ++  + + VPSNWQMHG+D PIYTNV YP  
Sbjct: 51  LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 149 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGY 200
           ++PP VP ENPTGCY   F++ + W Q  +  + F+ V+SAF  W NG  VGY
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGY 161
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P) Length = 1023 Back     alignment and structure
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) Length = 1023 Back     alignment and structure
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galactose Length = 1023 Back     alignment and structure
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom Length = 1023 Back     alignment and structure
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained Monomer- Monoclinic) Length = 1023 Back     alignment and structure
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With Iptg Length = 1023 Back     alignment and structure
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With D- Galctopyranosyl-1-One" Length = 1023 Back     alignment and structure
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With D- Galactopyranosyl-1-On Length = 1023 Back     alignment and structure
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v) Length = 1023 Back     alignment and structure
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) Length = 1052 Back     alignment and structure
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With Allolactose Length = 1023 Back     alignment and structure
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) Length = 1021 Back     alignment and structure
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q) Length = 1023 Back     alignment and structure
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) Length = 1023 Back     alignment and structure
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Length = 1052 Back     alignment and structure
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) Length = 1052 Back     alignment and structure
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) Length = 1052 Back     alignment and structure
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With Iptg Length = 1052 Back     alignment and structure
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) Length = 1052 Back     alignment and structure
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Length = 1052 Back     alignment and structure
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides Thetaiotaomicron Vpi-5482 Length = 1010 Back     alignment and structure
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme C2- 2-1) Length = 1024 Back     alignment and structure
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2 Protein From Bacteroides Thetaiotaomicron Length = 1000 Back     alignment and structure
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces Lactis In Complex With Galactose Length = 1032 Back     alignment and structure
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides Vulgatus Length = 801 Back     alignment and structure
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli Beta-Glucuronidase Length = 605 Back     alignment and structure
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A Novel, Potent Inhibitor 1-((6,7-Dimethyl-2-Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)-1- (2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea Length = 605 Back     alignment and structure
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli Beta- Glucuronidase Length = 605 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 2e-60
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 1e-56
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 4e-54
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 3e-49
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 1e-35
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 2e-34
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 6e-30
3cmg_A 667 Putative beta-galactosidase; structural genomics, 3e-17
3fn9_A 692 Putative beta-galactosidase; structural genomics, 4e-15
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 8e-15
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 6e-07
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Length = 1010 Back     alignment and structure
 Score =  203 bits (517), Expect = 2e-60
 Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 38/197 (19%)

Query: 12  LENANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDA 71
           +        W+    +   K  PH  +  +       K                      
Sbjct: 1   MSLKQPLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPGGYEQS--------------- 45

Query: 72  VHEALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQ 131
                          P+  SL+G WKF    +P + P +F++ S+    W  I VP NW+
Sbjct: 46  ---------------PYYMSLNGKWKFNWVKNPDNRPKDFYQPSYYTGGWADINVPGNWE 90

Query: 132 MHGFDRPIYTNVVYPF-------PLDPPNVP-AENPTGCYRTYFHIPKEWQGRRILLHFE 183
             G+   IY N  Y F         +PP VP AEN  G YR  F +P +W+GRR++L  E
Sbjct: 91  RQGYGTAIYVNETYEFDDKMFNFKKNPPLVPFAENEVGSYRRTFKVPADWKGRRVVLCCE 150

Query: 184 AVDSAFCAWINGVPVGY 200
            V S +  W+NG  +GY
Sbjct: 151 GVISFYYVWVNGKLLGY 167
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Length = 1023 Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Length = 1032 Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Length = 1024 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Length = 605 Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Length = 801 Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Length = 613 Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Length = 667 Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Length = 692 Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Length = 1032 Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Length = 848 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 100.0
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 100.0
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 100.0
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 100.0
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 99.89
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 99.88
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 99.84
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 99.83
3cmg_A 667 Putative beta-galactosidase; structural genomics, 99.83
3fn9_A 692 Putative beta-galactosidase; structural genomics, 99.8
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 99.75
1tg7_A 971 Beta-galactosidase; TIM barrel domain, glycoside h 98.79
3og2_A 1003 Beta-galactosidase; TIM barrel domain, glycoside h 98.6
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 98.06
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 97.08
3d3a_A612 Beta-galactosidase; protein structure initiative I 94.36
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 92.83
3cih_A 739 Putative alpha-rhamnosidase; structural genomics, 92.82
3d3a_A 612 Beta-galactosidase; protein structure initiative I 90.1
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 87.27
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
Probab=100.00  E-value=6.6e-39  Score=324.71  Aligned_cols=174  Identities=32%  Similarity=0.631  Sum_probs=155.2

Q ss_pred             CCCCCCCCCcccccccccCCCCCccccCCHHHHhhhhhhcccccccccCCCcccchhhHHhhhhccccCCCCCceeeccc
Q 027098           15 ANGYKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSG   94 (228)
Q Consensus        15 ~~~~~~wenp~v~~~n~~~~~a~~~~y~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG   94 (228)
                      ++..+.||||+|+++||||+||+|+||+++++|+...  +               .             ..|+..++|||
T Consensus         4 ~~~~~~w~~~~v~~~nr~~~~a~~~~~~~~~~a~~~~--~---------------~-------------~~s~~~~~LnG   53 (1010)
T 3bga_A            4 KQPLPEWQSQYAVGLNKLAPHTYVWPYADASDIGKPG--G---------------Y-------------EQSPYYMSLNG   53 (1010)
T ss_dssp             ---CCGGGCSSCCBSSCCCCCCCCCCCSCGGGGGSTT--G---------------G-------------GGSTTEEECCE
T ss_pred             cccccCCCCCcccccCCCCCCCCccCcCCHHHHhhcc--c---------------c-------------ccCceEEecCC
Confidence            3455679999999999999999999999999887520  0               0             13568999999


Q ss_pred             cceeeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccC-------CCCCCCCCCC-CCceeEEEE
Q 027098           95 HWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPF-------PLDPPNVPAE-NPTGCYRTY  166 (228)
Q Consensus        95 ~W~F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf-------~~~pp~vp~~-n~~g~YRr~  166 (228)
                      .|+|++.+.+...|.+|+++++++++|.+|.|||+|+++|++.|+|+|+.|||       +.+||++|.+ ++++||||+
T Consensus        54 ~W~F~~~~~~~~~~~~~~~~~~~~s~W~~i~VP~~w~~~g~~~p~y~n~~~p~~~~~~~~~~~~p~vp~~~~~~~~Yrr~  133 (1010)
T 3bga_A           54 KWKFNWVKNPDNRPKDFYQPSYYTGGWADINVPGNWERQGYGTAIYVNETYEFDDKMFNFKKNPPLVPFAENEVGSYRRT  133 (1010)
T ss_dssp             EEEEEEEESGGGSCTTTTSTTSCCTTSEEEEESSCGGGGTSSCCEEESSSCTTSBGGGTBCCBTTBCCSTTCEEEEEEEE
T ss_pred             CccEEECCCcccCchhhhcCCCCcCCCeEEecCCcHHHcCCCCcccccccccccccccccccCCCCcccccCcEEEEEEE
Confidence            99999999888889999999999999999999999999999999999999999       6789999976 999999999


Q ss_pred             EEcCCCCCCCeEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098          167 FHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV  222 (228)
Q Consensus       167 F~lp~~w~gk~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~  222 (228)
                      |+||+.|++++++|+|+||++.++|||||++||+|+    |++.++++|||.+|+.
T Consensus       134 F~vp~~~~g~~v~L~F~gv~~~a~V~vNG~~vG~~~----gg~~p~~~DIT~~L~~  185 (1010)
T 3bga_A          134 FKVPADWKGRRVVLCCEGVISFYYVWVNGKLLGYNQ----GSKTAAEWDITDVLSE  185 (1010)
T ss_dssp             EECCGGGTTSEEEEEESCEESEEEEEETTEEEEEEE----CSSSCEEEECGGGCCS
T ss_pred             eEeCcccCCCEEEEEECCCCceeEEEECCEEEeeEe----CCCCcceeehhhhccC
Confidence            999999999999999999999999999999999999    5666999999998753
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1yq2a3216 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacte 2e-22
d2vzsa4184 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolato 4e-21
d1jz8a3207 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichi 3e-19
d2je8a4192 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides 4e-17
d1tg7a2182 b.18.1.27 (A:667-848) Beta-galactosidase LacA, dom 5e-16
d1bhga2204 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Hom 2e-14
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Length = 216 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Arthrobacter sp. c2-2 [TaxId: 192168]

 Score = 89.1 bits (220), Expect = 2e-22
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 22/148 (14%)

Query: 91  SLSGHWKFFLASSPPDV------------PLNFHKSSFQDSKWEAIPVPSNWQM---HGF 135
           SL+G W+F L  + P                     S+ D+ W+ +PVPS+W M     +
Sbjct: 31  SLNGDWRFRLLPAAPGTAGAGSVLPSGETVEGVAAESYDDAAWDTLPVPSHWVMGQDGKY 90

Query: 136 DRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIP---KEWQGRRILLHFEAVDSAFCAW 192
            RPIYTNV YPFP+DPP+VP  NPTG +R  F +P    E     + L F+ V+S +  W
Sbjct: 91  GRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFDGVESRYKVW 150

Query: 193 INGVPVGYRSVRIVGYQRSLKFQITVIL 220
           +NG  +G  S    G + + +F ++  L
Sbjct: 151 VNGQEIGVGS----GSRLAQEFDVSDAL 174
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Length = 184 Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 192 Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Length = 182 Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 100.0
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 100.0
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 99.91
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 99.88
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.85
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 99.84
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 95.65
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: beta-Galactosidase/glucuronidase, N-terminal domain
domain: beta-Galactosidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-41  Score=283.22  Aligned_cols=166  Identities=35%  Similarity=0.713  Sum_probs=149.9

Q ss_pred             CCCCCCcccccccccCCCCCccccCCHHHHhhhhhhcccccccccCCCcccchhhHHhhhhccccCCCCCceeeccccce
Q 027098           18 YKVWEDPSFIKWRKRDPHVTLRCHDSVEGSLKYWYERNKVDISVSNSAVWDDDAVHEALTSAAFWTNGLPFVKSLSGHWK   97 (228)
Q Consensus        18 ~~~wenp~v~~~n~~~~~a~~~~y~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~sLnG~W~   97 (228)
                      +++||||+|++||||||||+|++|.+.+.|...                                 ..|+..+||||.|+
T Consensus         1 ~~~w~~~~~~~~nrl~~~s~~~~~~~~~~a~~~---------------------------------~~sr~~~sLnG~W~   47 (207)
T d1jz8a3           1 RRDWENPGVTQLNRLAAHPPFASWRNSEEARTD---------------------------------RPSQQLRSLNGEWR   47 (207)
T ss_dssp             CCGGGCTTCSEESCCCCCSCCCCBSSHHHHHHT---------------------------------CCCTTEEECCEEEE
T ss_pred             CCCccCcccccccCcCCCCCccccCCHHHHhhC---------------------------------CCccceEccCCcee
Confidence            468999999999999999999999999988642                                 14678999999999


Q ss_pred             eeecCCCCCCCccccCCCCCCCCCeEecCCCcccccCCCCceeccccccCCCCCCCCCCCCCceeEEEEEEcCCCC-CCC
Q 027098           98 FFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEW-QGR  176 (228)
Q Consensus        98 F~~~~~~~~~p~~~~~~~~d~s~W~~I~VPg~w~~~G~~~p~Y~N~~ypf~~~pp~vp~~n~~g~YRr~F~lp~~w-~gk  176 (228)
                      |++.+.+...+..|++.++  ++|..|.||++|+.+|++.++|++..|++....|.++..+++|||||+|+||++| +|+
T Consensus        48 F~~~~~~~~~~~~~~~~~~--~~~~~i~vP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wY~r~f~ip~~~~~~~  125 (207)
T d1jz8a3          48 FAWFPAPEAVPESWLECDL--PEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEG  125 (207)
T ss_dssp             EEEESSGGGSCTHHHHSCC--TTCEEEEESCCGGGGTSSCCEEESSSCSSCSCTTCCCSSCCEEEEEEEEEECHHHHSSS
T ss_pred             eEEccCccccccccccCCC--CccceeccccceeecCCCCcccccccccccccCccccccCceEEEEEEeEecccccCCC
Confidence            9999988888888876654  5699999999999999999999999999999999999889999999999999998 799


Q ss_pred             eEEEEeCCcCceeEEEEcCEEeeeEecccCCeeeeEEEEeccceee
Q 027098          177 RILLHFEAVDSAFCAWINGVPVGYRSVRIVGYQRSLKFQITVILMV  222 (228)
Q Consensus       177 ~v~L~FeGV~s~~~VwVNG~~VG~s~~~itG~~~~~~~dIT~~V~~  222 (228)
                      +++|+|+||++.++|||||++||+|++    ++.|+++|||.+|+-
T Consensus       126 ~i~L~f~gv~~~a~V~vNG~~vG~~~g----g~~pf~fDiT~~l~~  167 (207)
T d1jz8a3         126 QTRIIFDGVNSAFHLWCNGRWVGYGQD----SRLPSEFDLSAFLRA  167 (207)
T ss_dssp             EEEEEESCEESEEEEEETTEEEEEEEC----TTSCEEEECTTTCCS
T ss_pred             EEEEEecccceEEEEEECCEEEEEecC----CCcCEEEeChhcccC
Confidence            999999999999999999999999994    556888888887753
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure