Citrus Sinensis ID: 027120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPCGYH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHccccccEEEEEEEEEccEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEccccccccEEEEccccEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHcccccccccccccccccccccccEEEEEEEEEEEEEccEEEEcccccccccccEEEEEEEccccccHHHHEEEEEEEEccccccccEEEEcccEEEEEcccEEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEcEEEcccccHHHHHHHHccccccccccccccccccccccccEEEEccEccccccHcEEEcccccccc
Coil and Loop (DISEMBL)
megeiepvdcasaskpprleipkvpddsekpiaikRLKDVEICVPIVYGTMAFHlgrkasesqshrWTVYVRGATNEDIGVVIKRVVFqlhpsfnnptrvvesppfelqecgwgeFEIAISLFFhsdvcdkpldlyhhlklypeaesgpkstkkpvvmesyneivfpepaegffarvlnhpavvvprlpagfvlptpgkascLFLFGVWVGVGgvanfcllrnpcgyh
Flexible Loop (DISEMBL)
megeiepvdcasaskpprleipkvpddsekpiaikrlkdveICVPIVYGTMAFHlgrkasesqshrWTVYVRGATNEDIGVVIKRVVFQLHPsfnnptrvvesppFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLypeaesgpkstkKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPCGYH
Low Complexity Region (SEG)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFgvwvgvggvANFCLLRNPCGYH
Disordered region (IsUnstruct)
*******************************IAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP************VVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPC***
Disordered Region (DISOPRED)
***************************************VEICVPIVYGTMAFHLGR*ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFAR****************************************************
Disordered Region (DISEMBL)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEA*********PVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPCGYH
Disordered Region (DISPRO)
*********************************IKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPCGYH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLFLFGVWVGVGGVANFCLLRNPCGYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q755P0	208	Protein AF-9 homolog OS=A	yes	no	0.723	0.793	0.424	2e-34
P53930	226	Protein AF-9 homolog OS=S	yes	no	0.723	0.730	0.382	2e-30
Q6CIV8	220	Protein AF-9 homolog OS=K	yes	no	0.723	0.75	0.382	2e-30
Q6FXM4	221	Protein AF-9 homolog OS=C	yes	no	0.723	0.746	0.356	2e-29
Q5BC71	275	Protein AF-9 homolog OS=E	yes	no	0.622	0.516	0.430	1e-26
Q10319	217	Protein AF-9 homolog OS=S	yes	no	0.640	0.672	0.401	2e-25
Q4WPM8	252	Protein AF-9 homolog OS=N	yes	no	0.649	0.587	0.385	2e-24
O95619	227	YEATS domain-containing p	yes	no	0.583	0.585	0.433	5e-24
Q9CR11	227	YEATS domain-containing p	yes	no	0.583	0.585	0.433	5e-24
Q7RZK7	309	Protein AF-9 homolog OS=N	N/A	no	0.614	0.453	0.374	3e-22

>sp|Q755P0|AF9_ASHGO Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 104/179 (58%), Gaps = 14/179 (7%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PIVYG  A  +G      A    +H WT++VRG   EDI   IK+V
Sbjct: 3   PAQAKRIKTLSVARPIVYGNTAKKMGDVRPAIAPSEHTHMWTIFVRGPQGEDISYFIKKV 62

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP-EA 145
           VF+LH ++ NP RVV++PPFEL E GWGEFEI + + F  +  +K L+ YHHL+L+P   
Sbjct: 63  VFKLHETYPNPVRVVDAPPFELTETGWGEFEINVKVHFVDEANEKMLNFYHHLRLHPYTE 122

Query: 146 ESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPTPGKASCLF 204
           E G +S    V    Y+EIVF EP E FFA+++  P         G +LP+     C+F
Sbjct: 123 EDGRRSDGDEVSSVFYDEIVFNEPNEAFFAKMIEQP---------GNLLPSNKTPDCVF 172

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P53930|AF9_YEAST Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 26/191 (13%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+V
Sbjct: 3   PTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKV 62

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
           VF+LH ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A 
Sbjct: 63  VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYAN 122

Query: 147 SGPKS------------TKKPVVMESY-NEIVFPEPAEGFFARVLNHPAVVVPRLPAGFV 193
             P S            +K   V   Y +EIVF EP E FF  +++ P         G +
Sbjct: 123 PVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRP---------GNL 173

Query: 194 LPTPGKASCLF 204
           LP+     C++
Sbjct: 174 LPSNKTDDCVY 184

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6CIV8|AF9_KLULA Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 105/188 (55%), Gaps = 23/188 (12%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +  PI+YG  A  +G      A +  +H WT++VR    EDI   IK+V
Sbjct: 4   PPVTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKV 63

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLY---- 142
           VF+LH ++ NP RV+E+PPFEL E GWGEFEI I ++F     +K L+ YHHL+L+    
Sbjct: 64  VFKLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYIN 123

Query: 143 PEAESGPKSTKKPVVMES------YNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFVLPT 196
           PE +   +S  +  V E       ++EIVF EP E FF  +++ P         G + P+
Sbjct: 124 PETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKP---------GNLFPS 174

Query: 197 PGKASCLF 204
               +C+F
Sbjct: 175 NKTPTCVF 182

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FXM4|AF9_CANGA Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 26/191 (13%)

Query: 31  PIAIKRLKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRV 86
           P   KR+K + +   ++YG  A  +G      A    +H WT++VR  T +DI   IK+V
Sbjct: 3   PPTSKRIKTLSVSRAVIYGNTAKKIGENRPPNAPSEHTHLWTIFVRSPTGDDISYFIKKV 62

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP--- 143
           VF+LH ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K ++ YH L+L+P   
Sbjct: 63  VFKLHETYPNPVRTIEAPPFELTETGWGEFDINIKIYFVEESNEKFINFYHRLRLHPYVN 122

Query: 144 ----------EAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAGFV 193
                     + E+G  +T   +    Y+EIVF EP E FF  +++ P         G +
Sbjct: 123 VNPPMSTEVKKEETGNATTSDEISSIFYDEIVFNEPYEDFFKILVSKP---------GNL 173

Query: 194 LPTPGKASCLF 204
           LP+     CLF
Sbjct: 174 LPSNKTEDCLF 184

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q5BC71|AF9_EMENI Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 9/151 (5%)

Query: 32  IAIKRLKDVEICVPIVYGTMA--FHLGRK---ASESQSHRWTVYVRGATNEDIGVVIKRV 86
              KR++ V I  P V+G+ A  F    K    S   +H+W VYVRG   EDI   IK+V
Sbjct: 5   TGTKRVRGVSIFRPFVFGSEAQPFDPATKPSNVSSDHTHQWRVYVRGVNGEDISYWIKKV 64

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLY---P 143
            F+LH ++    R VE PP+E+ E GWGEFEI I ++F  +  +KP  L+H LKL+   P
Sbjct: 65  QFKLHETYVQNVRTVEHPPYEVTETGWGEFEIQIKIYFVPESMEKPQTLWHSLKLHPYGP 124

Query: 144 EAESGPKSTKKPVVMESYNEIVFPEPAEGFF 174
           +AE G K  ++ VV ++Y E+VF EP E F+
Sbjct: 125 DAE-GKKERREVVVSQNYEEVVFNEPVEQFY 154

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q10319|AF9_SCHPO Protein AF-9 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yaf9 PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 6/152 (3%)

Query: 36  RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           R+   +I  PI+ G  A  L +    KA    +H W ++V G   EDI   +++VVF+LH
Sbjct: 6   RVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLH 65

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
            ++NNPTR +ESPPFE+ E GWGEF+I + +FF  +  +K L  YHHLKL+P      + 
Sbjct: 66  DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPYGPRMEEM 125

Query: 152 TKKPVVMES--YNEIVFPEPAEGFFARVLNHP 181
                ++ES  Y EIVF EP E  +  +  +P
Sbjct: 126 KASGGLVESVQYEEIVFNEPFEYTYKLLSQNP 157

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4WPM8|AF9_ASPFU Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 13/161 (8%)

Query: 32  IAIKRLKDVEICVPIVYGTMA--FHLGRK---ASESQSHRWTVYVRGATNEDIGVVIKRV 86
              KR++ V I  P V+G+ A  F   +K        +H+W V+V+G  +EDI   +K+V
Sbjct: 5   TGTKRVRGVSIFRPFVFGSEARPFDPEKKPPHVPADHTHQWRVFVKGVNDEDISYWLKKV 64

Query: 87  VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
            F+LH ++    R +E PPFE+ E GWGEFEI I L+F  +  +KP  L+H LKL+P   
Sbjct: 65  QFKLHETYAQNVRTIEQPPFEVTETGWGEFEIQIKLYFVPESGEKPQTLWHSLKLHP--- 121

Query: 147 SGP-----KSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA 182
            GP     K  ++ V+ ++Y EIVF EP E F+  +   P 
Sbjct: 122 FGPGAEVKKERREVVISQNYEEIVFNEPMEPFYDLLTGGPT 162

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O95619|YETS4_HUMAN YEATS domain-containing protein 4 OS=Homo sapiens GN=YEATS4 PE=1 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 36  RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
           R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 95  NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
            NP RVV  PP+E+ E GWGE    I   F  D  ++P+ LYH LKL+ ++++     KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query: 155 PVVMESYNEIVFPEPA 170
            VV E Y+E++F +P 
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q9CR11|YETS4_MOUSE YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 36  RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
           R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 95  NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
            NP RVV  PP+E+ E GWGE    I   F  D  ++P+ LYH LKL+ ++++     KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query: 155 PVVMESYNEIVFPEPA 170
            VV E Y+E++F +P 
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Mus musculus (taxid: 10090)

>sp|Q7RZK7|AF9_NEUCR Protein AF-9 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=yaf-9 PE=3 SV=1

 Score =  105 bits (261), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 15/155 (9%)

Query: 35  KRLKDVEICVPIVYGTMAFHLGRKAS-------ESQSHRWTVYVRGATNEDIGVVIKRVV 87
           KR+K V+I  P VYGT A     K +       +  +H WTV+++G  + DI   ++RV 
Sbjct: 7   KRVKGVQIFRPFVYGTTARPFDEKTNPKPPGIPDDHTHSWTVFIKGIDDVDITYWLRRVQ 66

Query: 88  FQLHPSFNNPTRVVES---PPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP- 143
           F+LH S  N  R+VE     PF++ E GWGEFEI + L++  +  +KP  LYHHL+L+P 
Sbjct: 67  FKLHESIPNHVRMVEGVKGQPFQIHETGWGEFEITMKLYYVPESSEKPQTLYHHLRLHPF 126

Query: 144 ----EAESGPKSTKKPVVMESYNEIVFPEPAEGFF 174
               E +   +     V+   Y E +F EP E F+
Sbjct: 127 GRTEEEKEAMRLNGGEVISWVYEEQIFNEPYEPFY 161

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
356538281	279	PREDICTED: protein AF-9 homolog [Glycine	0.859	0.702	0.790	2e-85
255638225	279	unknown [Glycine max]	0.859	0.702	0.790	2e-85
356496649	279	PREDICTED: protein AF-9 homolog [Glycine	0.859	0.702	0.785	2e-84
449434170	277	PREDICTED: protein AF-9 homolog [Cucumis	0.820	0.675	0.786	7e-83
357483751	275	AF-9-like protein [Medicago truncatula]	0.828	0.687	0.772	2e-82
255579819	270	YEATS domain-containing protein, putativ	0.850	0.718	0.758	3e-82
388516831	282	unknown [Lotus japonicus]	0.842	0.680	0.770	8e-82
388491256	275	unknown [Medicago truncatula]	0.828	0.687	0.767	2e-81
359476582	273	PREDICTED: protein AF-9 homolog [Vitis v	0.815	0.681	0.768	9e-79
224097160	280	predicted protein [Populus trichocarpa]	0.846	0.689	0.725	8e-77

>gi|356538281|ref|XP_003537632.1| PREDICTED: protein AF-9 homolog [Glycine max]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/196 (79%), Positives = 173/196 (88%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA KP RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKPSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FHSDVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+E F ARV NHP
Sbjct: 132 LYFHSDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEVFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTP 197
           AV VPRLPAG  LP+P
Sbjct: 192 AVNVPRLPAGLNLPSP 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638225|gb|ACU19426.1| unknown [Glycine max]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/196 (79%), Positives = 173/196 (88%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA KP RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKPSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FHSDVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+E F ARV NHP
Sbjct: 132 LYFHSDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEVFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTP 197
           AV VPRLPAG  LP+P
Sbjct: 192 AVNVPRLPAGLNLPSP 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496649|ref|XP_003517178.1| PREDICTED: protein AF-9 homolog [Glycine max]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/196 (78%), Positives = 172/196 (87%)

Query: 2   EGEIEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASE 61
           +GE    D ASA K  RL+I    +DS+K  A +RLKDVEICVPIVYGT+AF+LGRKASE
Sbjct: 12  QGEQSSDDGASAIKLSRLKIAIPSEDSDKKNANRRLKDVEICVPIVYGTIAFYLGRKASE 71

Query: 62  SQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAIS 121
           SQSH+WTVYVRGA+NED+GVV+KRVVFQLHPSFNNPTRVVESPPFEL ECGWGEFEIAI+
Sbjct: 72  SQSHKWTVYVRGASNEDLGVVVKRVVFQLHPSFNNPTRVVESPPFELSECGWGEFEIAIT 131

Query: 122 LFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
           L+FH DVC+K LDLYHHLKLYPE ESGP+STKKPVV+ESYNEIVFPEP+EGF ARV NHP
Sbjct: 132 LYFHPDVCEKQLDLYHHLKLYPEDESGPQSTKKPVVVESYNEIVFPEPSEGFLARVQNHP 191

Query: 182 AVVVPRLPAGFVLPTP 197
           AV VPRLPAG  LP+P
Sbjct: 192 AVNVPRLPAGLNLPSP 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434170|ref|XP_004134869.1| PREDICTED: protein AF-9 homolog [Cucumis sativus] gi|449525890|ref|XP_004169949.1| PREDICTED: protein AF-9 homolog [Cucumis sativus]

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 147/187 (78%), Positives = 168/187 (89%)

Query: 12  SASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYV 71
           S +KPPR++I K  + S+   A ++LKD+EICVPIV GT+AF+LGRKASESQSH+WTVYV
Sbjct: 19  SGNKPPRIKISKSSEGSDAKNASRKLKDMEICVPIVCGTIAFYLGRKASESQSHKWTVYV 78

Query: 72  RGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDK 131
           RGATNED+GVVIKRVVFQLHPSFNNPTRV+ESPPFEL E GWGEFEIAI+LFFHSDVCDK
Sbjct: 79  RGATNEDLGVVIKRVVFQLHPSFNNPTRVIESPPFELSESGWGEFEIAITLFFHSDVCDK 138

Query: 132 PLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAG 191
            LDL+HHLKLYPE ESGP++TKKPVV+ESYNEIVFP+P+E FF+RV NHPAVVVPRLPAG
Sbjct: 139 QLDLFHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPSEIFFSRVQNHPAVVVPRLPAG 198

Query: 192 FVLPTPG 198
           F LP P 
Sbjct: 199 FNLPNPA 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483751|ref|XP_003612162.1| AF-9-like protein [Medicago truncatula] gi|355513497|gb|AES95120.1| AF-9-like protein [Medicago truncatula]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/189 (77%), Positives = 166/189 (87%)

Query: 9   DCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWT 68
           D +S  KP RL+I    +DS+K I IKR+KDVEICVPIVYGT+AF LGRKASESQSH+WT
Sbjct: 20  DDSSDIKPSRLKISLPSEDSDKKILIKRVKDVEICVPIVYGTIAFFLGRKASESQSHKWT 79

Query: 69  VYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDV 128
           VYVRGA+NED+  V+KRVVFQLHPSFNNPTRVVESPPFE+ ECGWGEFEIAI+LFFHSD 
Sbjct: 80  VYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDA 139

Query: 129 CDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRL 188
           C+K LDLYHHLKLYPE ESGP++TK+PVV+ESYNE+VFPEP+E F ARV NHPAVVVPRL
Sbjct: 140 CEKQLDLYHHLKLYPEDESGPQNTKRPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPRL 199

Query: 189 PAGFVLPTP 197
           P G  LP+P
Sbjct: 200 PDGLNLPSP 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579819|ref|XP_002530747.1| YEATS domain-containing protein, putative [Ricinus communis] gi|223529711|gb|EEF31653.1| YEATS domain-containing protein, putative [Ricinus communis]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 148/195 (75%), Positives = 172/195 (88%), Gaps = 1/195 (0%)

Query: 4   EIEPVDCASASKPPRLEIPKVPDDSE-KPIAIKRLKDVEICVPIVYGTMAFHLGRKASES 62
           E +P D  SA+KP R++  K  ++S+   +A  R+KDVEI VP+VYGT+AF+LGRKASE+
Sbjct: 8   ESQPEDGGSAAKPQRIKFGKPTENSDTNKVANMRIKDVEISVPVVYGTIAFYLGRKASET 67

Query: 63  QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISL 122
           QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF+NPTRVVESPPFEL ECGWGEFEIAI+L
Sbjct: 68  QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFSNPTRVVESPPFELSECGWGEFEIAITL 127

Query: 123 FFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPA 182
           +FHSDVC++ LDLYH LKLYPE E+GP+STKKPVV+ESYNEIVFP+P+E F ARV NHPA
Sbjct: 128 YFHSDVCNEQLDLYHQLKLYPEDETGPQSTKKPVVVESYNEIVFPDPSENFLARVQNHPA 187

Query: 183 VVVPRLPAGFVLPTP 197
           V+VPRLPAGF LPTP
Sbjct: 188 VIVPRLPAGFNLPTP 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516831|gb|AFK46477.1| unknown [Lotus japonicus]

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/192 (77%), Positives = 169/192 (88%)

Query: 6   EPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSH 65
           E  D  SA KP RL+I    ++S+K    KRLKDVEI VPIVYGT+AF+LGRKASESQSH
Sbjct: 19  EDDDAPSAIKPSRLKIAVPSEESDKKNVNKRLKDVEISVPIVYGTIAFYLGRKASESQSH 78

Query: 66  RWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFH 125
           +WTVYVRGA+NED+GVV+K+VVFQLHPSFNNPTRVVESPPF++ ECGWGEFEIAISLFFH
Sbjct: 79  KWTVYVRGASNEDLGVVVKKVVFQLHPSFNNPTRVVESPPFQVSECGWGEFEIAISLFFH 138

Query: 126 SDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVV 185
           SDVC+K LDLYHHLKLYPE ESGP++TKKPVV+E+YNEIVFPEP+E F ARVLNHPAVVV
Sbjct: 139 SDVCEKQLDLYHHLKLYPEDESGPQNTKKPVVVETYNEIVFPEPSEVFLARVLNHPAVVV 198

Query: 186 PRLPAGFVLPTP 197
           P+LP G  LP+P
Sbjct: 199 PKLPVGLNLPSP 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491256|gb|AFK33694.1| unknown [Medicago truncatula]

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/189 (76%), Positives = 165/189 (87%)

Query: 9   DCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWT 68
           D +S  KP RL+I    +DS+K I IKR+KDV ICVPIVYGT+AF LGRKASESQSH+WT
Sbjct: 20  DDSSDIKPSRLKISLPSEDSDKKILIKRVKDVGICVPIVYGTIAFFLGRKASESQSHKWT 79

Query: 69  VYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDV 128
           VYVRGA+NED+  V+KRVVFQLHPSFNNPTRVVESPPFE+ ECGWGEFEIAI+LFFHSD 
Sbjct: 80  VYVRGASNEDLSAVVKRVVFQLHPSFNNPTRVVESPPFEISECGWGEFEIAITLFFHSDA 139

Query: 129 CDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRL 188
           C+K LDLYHHLKLYPE ESGP++TK+PVV+ESYNE+VFPEP+E F ARV NHPAVVVPRL
Sbjct: 140 CEKQLDLYHHLKLYPEDESGPQNTKRPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPRL 199

Query: 189 PAGFVLPTP 197
           P G  LP+P
Sbjct: 200 PDGLNLPSP 208

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476582|ref|XP_002269156.2| PREDICTED: protein AF-9 homolog [Vitis vinifera] gi|297735026|emb|CBI17388.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 161/186 (86%)

Query: 12  SASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYV 71
           SA K  RL + +  DD EK I  +RLKDVEICVPI YGT++F LGRKASESQSH+WTVYV
Sbjct: 19  SAIKLQRLVMGRSTDDPEKKIPNRRLKDVEICVPISYGTISFWLGRKASESQSHKWTVYV 78

Query: 72  RGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDK 131
           RGATNED+GVVI+R VFQLHPSFNNP RVV+SPPFEL E GWGEFEIAI+L+FHSDVCDK
Sbjct: 79  RGATNEDLGVVIRRAVFQLHPSFNNPMRVVDSPPFELSESGWGEFEIAITLYFHSDVCDK 138

Query: 132 PLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLPAG 191
            LDL+HHLKLYPE ESGP+STKKPVV+ESYNEIVFP+P + FFARV +HPAV+VPRLPA 
Sbjct: 139 QLDLFHHLKLYPEDESGPQSTKKPVVVESYNEIVFPDPLDSFFARVKDHPAVIVPRLPAS 198

Query: 192 FVLPTP 197
           F LP P
Sbjct: 199 FNLPAP 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097160|ref|XP_002310857.1| predicted protein [Populus trichocarpa] gi|222853760|gb|EEE91307.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 140/193 (72%), Positives = 163/193 (84%)

Query: 5   IEPVDCASASKPPRLEIPKVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQS 64
           I+  D  SA+KP R++     D++      KRLKDVEI VP+VYGTMAF+LG+KA+E QS
Sbjct: 14  IQLEDVESAAKPQRIKPTDYTDNNINQDENKRLKDVEISVPVVYGTMAFYLGKKANELQS 73

Query: 65  HRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
           H+WTVYVRGATNED+GVVIK+VVFQLHPSF+NP RVVESPPFEL ECGWGEFEI IS+ F
Sbjct: 74  HKWTVYVRGATNEDLGVVIKQVVFQLHPSFDNPIRVVESPPFELSECGWGEFEICISILF 133

Query: 125 HSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVV 184
           H DVCDK +DL+H LKLYP+AESGP+STKKPVV+E+YNEIVFP+P+E F ARVLNHPAV 
Sbjct: 134 HDDVCDKHVDLFHLLKLYPDAESGPQSTKKPVVVETYNEIVFPDPSENFLARVLNHPAVY 193

Query: 185 VPRLPAGFVLPTP 197
           VPRLPAGF LP P
Sbjct: 194 VPRLPAGFNLPAP 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2157156	268	GAS41 "GLIOMAS 41" [Arabidopsi	0.815	0.694	0.668	2.2e-66
UNIPROTKB|Q32LE1	227	YEATS4 "Uncharacterized protei	0.578	0.581	0.466	7.9e-30
UNIPROTKB|E2QSI2	227	YEATS4 "Uncharacterized protei	0.578	0.581	0.466	7.9e-30
UNIPROTKB|O95619	227	YEATS4 "YEATS domain-containin	0.578	0.581	0.466	7.9e-30
MGI|MGI:1927224	227	Yeats4 "YEATS domain containin	0.578	0.581	0.466	7.9e-30
RGD|1305741	227	Yeats4 "YEATS domain containin	0.578	0.581	0.466	7.9e-30
UNIPROTKB|Q8UVS4	227	GAS41 "GAS41" [Gallus gallus (	0.578	0.581	0.459	1.6e-29
SGD|S000005051	226	YAF9 "Subunit of NuA4 histone	0.684	0.690	0.398	4.4e-29
ZFIN|ZDB-GENE-040718-252	226	yeats4 "YEATS domain containin	0.614	0.619	0.441	5.6e-29
FB|FBgn0031873	227	Gas41 "Gas41" [Drosophila mela	0.592	0.594	0.444	1.2e-28

TAIR|locus:2157156 GAS41 "GLIOMAS 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 127/190 (66%), Positives = 150/190 (78%)

Query:     9 DCASASKPPRLEIP-KVPDDSEKPIAIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRW 67
             D    S+P    +  K+    EK    K+LKD+EI VPIVYG +AF LG+KASE QSH+W
Sbjct:    13 DQPETSEPTLKSLKTKMTKSDEKQ---KKLKDIEISVPIVYGNVAFWLGKKASEYQSHKW 69

Query:    68 TVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSD 127
              VYVRGATNEDI VV+K+VVFQLH SFN+PTRV+E PPFE+ E GWGEFEIA++L FHSD
Sbjct:    70 AVYVRGATNEDISVVVKKVVFQLHSSFNSPTRVIEEPPFEVSESGWGEFEIAMTLHFHSD 129

Query:   128 VCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPR 187
             VCDKPL LYHHLKLYPE ESGP + KKPVV+ESY+EIVFP+P+E F ARV NHPA+  PR
Sbjct:   130 VCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESFLARVQNHPALTFPR 189

Query:   188 LPAGFVLPTP 197
             LP+G+ LP P
Sbjct:   190 LPSGYNLPAP 199

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0090239 "regulation of histone H4 acetylation" evidence=IMP

UNIPROTKB|Q32LE1 YEATS4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2QSI2 YEATS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O95619 YEATS4 "YEATS domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0007067 "mitosis" evidence=NAS

GO:0016363 "nuclear matrix" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1927224 Yeats4 "YEATS domain containing 4" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

RGD|1305741 Yeats4 "YEATS domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/135 (46%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIVYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAMLGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA;ISO

GO:0043967 "histone H4 acetylation" evidence=IEA;ISO

GO:0043968 "histone H2A acetylation" evidence=IEA;ISO

UNIPROTKB|Q8UVS4 GAS41 "GAS41" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 62/135 (45%), Positives = 91/135 (67%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  P+VYG +A + G+K  E   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPVVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+ ++++     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLF-QSDTNAILGKK 132

Query:   155 PVVMESYNEIVFPEP 169
              VV E Y+E++F +P
Sbjct:   133 TVVSEFYDEMIFQDP 147

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

SGD|S000005051 YAF9 "Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 69/173 (39%), Positives = 99/173 (57%)

Query:    31 PIAIKRLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRV 86
             P   KR+K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+V
Sbjct:     3 PTISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKV 62

Query:    87 VFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE 146
             VF+LH ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A 
Sbjct:    63 VFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYAN 122

Query:   147 SGPKS-----------TKKPVVMES--YNEIVFPEPAEGFFARVLNHPAVVVP 186
               P S             K   + S  ++EIVF EP E FF  +++ P  ++P
Sbjct:   123 PVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLP 175

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IGI;IDA;IPI

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0000812 "Swr1 complex" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0043486 "histone exchange" evidence=IMP

GO:0006281 "DNA repair" evidence=IEA;IDA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IPI

GO:0006348 "chromatin silencing at telomere" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040718-252 yeats4 "YEATS domain containing 4" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/145 (44%), Positives = 92/145 (63%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             R+K V I  PIV+G +A + G+K  +   +H+WTVYV+   NED+   +K++ F+LH S+
Sbjct:    15 RVKGVTIVKPIVFGNVARYFGKKREDDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKK 154
              NP RVV  PP+E+ E GWGEFEI I +FF  D  ++P+ LYH LKL+    S     KK
Sbjct:    75 GNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSDSSA--MPKK 131

Query:   155 PVVMESYNEIVFPEPAEGFFARVLN 179
              VV E Y+E++F +P      ++LN
Sbjct:   132 TVVSEFYDEMIFQDPT-AMMQQLLN 155

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

FB|FBgn0031873 Gas41 "Gas41" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 64/144 (44%), Positives = 90/144 (62%)

Query:    36 RLKDVEICVPIVYGTMAFHLGRKASES-QSHRWTVYVRGATNEDIGVVIKRVVFQLHPSF 94
             RLK V I  PIVYG +A   G+K  E   +H+W VY++   NED+ + +K+V F+LH S+
Sbjct:    11 RLKGVTIVKPIVYGNIARSFGKKREEDGHTHQWKVYLKPYFNEDMSIYVKKVHFKLHESY 70

Query:    95 NNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPE-------AES 147
              NP R+V  PP+E+ E GWGEFE+ I ++F+ D  ++P+  YH LKL+         + S
Sbjct:    71 ANPNRIVVKPPYEITETGWGEFEVIIKIYFN-DQSERPVTCYHILKLFQSPVVDGELSSS 129

Query:   148 GPKSTKKPVVMESYNEIVFPEPAE 171
                 TKK +V ESY EIVF EP +
Sbjct:   130 TTMDTKKGLVSESYEEIVFQEPTQ 153

GO:0005669 "transcription factor TFIID complex" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
pfam03366	84	pfam03366, YEATS, YEATS family	2e-37
COG5033	225	COG5033, TFG3, Transcription initiation factor IIF	6e-29

>gnl|CDD|190614 pfam03366, YEATS, YEATS family

 Score =  124 bits (315), Expect = 2e-37
 Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 64  SHRWTVYVRGATNE-DIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISL 122
           +H+WTV+VRG  NE D+   IK+V F+LH SF NP R V  PPFE+ E GWGEFEI I +
Sbjct: 1   THKWTVFVRGLDNEGDLSYFIKKVTFKLHESFPNPVRTVTKPPFEVTETGWGEFEIPIKI 60

Query: 123 FFHSDVCDKPLDLYHHLKLYPEA 145
           +F  D  +KP+ + H LKL+PE 
Sbjct: 61  YFV-DSNEKPVTIQHDLKLHPEG 82

We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity. Length = 84

>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary subunit [Transcription]

 Score =  107 bits (270), Expect = 6e-29
 Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 34  IKRLKDVEICVPIVYGTMAFHLG--RKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           +KR + ++    I+ G  A  LG   +     +H W V+VR    EDI  ++K+V+F+LH
Sbjct: 4   VKRTERLKTQRVIIPGE-AKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLH 62

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGP-- 149
           P+F+NPTR +ESPPFE++E GWGEF+I I +FF     +K +  Y H    P A   P  
Sbjct: 63  PTFSNPTRTIESPPFEIKETGWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVD 122

Query: 150 -----------KSTKKPVVMESYNEIVFPEPAEGFFARVLNHP 181
                       S    V      E  F EP       +    
Sbjct: 123 IPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLNGAK 165

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG3149	249	consensus Transcription initiation factor IIF, aux	100.0
PF03366	84	YEATS: YEATS family; InterPro: IPR005033 Named the	100.0
COG5033	225	TFG3 Transcription initiation factor IIF, auxiliar	100.0

>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=2.4e-38  Score=281.92  Aligned_cols=166  Identities=46%  Similarity=0.732  Sum_probs=149.4

Q ss_pred             ccceeeceEEEEeEEEccceEEcCCCCCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCceeeecCCcEEEEee
Q 027120           33 AIKRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECG  112 (228)
Q Consensus        33 ~~~R~k~~~I~~pIV~Gn~A~~l~k~~~e~~tH~WtVyVR~~~~edls~fIkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  112 (228)
                      +.+|++.++|+++|++||.|++++++.++.+||.|+||||+.+++|++.||+||+|+||+||++|+|++++|||+|+|+|
T Consensus         5 ~~~~~~~~~~~~~iv~G~~a~~~~~~~~~~~th~w~v~v~~~~~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~EtG   84 (249)
T KOG3149|consen    5 SIKRTKECTISVPIVPGNRAAILGKRLPDGFTHIWEVYVRGPGKEDISAFVDKVVFKLHESFPNPRRVVESPPFEITETG   84 (249)
T ss_pred             CcceeeeeeEEeeeecCccccccCCCCCcccceeeEEEecCcCccccceeeeeeeeecccccccccccccCCCceEEeec
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEeeEEEEEccCCCCCCEEEEEEeeeCCCCC---CCC-----------CCCCCCeEEEeee-EEEecCCCHHHHHHH
Q 027120          113 WGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAE---SGP-----------KSTKKPVVMESYN-EIVFPEPAEGFFARV  177 (228)
Q Consensus       113 WGEF~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~---~~~-----------~~~~~pVv~E~yd-eIVF~nPse~f~~~L  177 (228)
                      ||||+|+|+|||.++.+++++.++|+|+|+.++.   ..+           ...+.+++++.|| +++|++|+++++..+
T Consensus        85 wgeF~i~i~i~f~d~~~~~~v~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~r~~v~~~~~~~e~~f~~~~~~~~~~~  164 (249)
T KOG3149|consen   85 WGEFEIQIEIFFTDDANEKKVTLYHDLKLHSYGAPPVPHEESTKKTFVNPTISLRIPVVREGVDVEIVFPDPTESTSIEA  164 (249)
T ss_pred             cccceEEEEEEeccCCCCceeeeeeeEEeeccCCCCccchhhhcccccccchhcccccccccccceeecCCCCccccccc
Confidence            9999999999999999999999999999988742   111           2346789999999 999999999999999


Q ss_pred             HcCCCccCCCCCCCCCcCCCC
Q 027120          178 LNHPAVVVPRLPAGFVLPTPG  198 (228)
Q Consensus       178 ~~~~~~~~p~~~~~~~~p~p~  198 (228)
                      ...+..+..+.+.....+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~  185 (249)
T KOG3149|consen  165 SSRPVGPGSNLAAVTDLKQVK  185 (249)
T ss_pred             CCCCCcCCccccccccccccc
Confidence            999987777666655554443

>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein

Probab=100.00  E-value=1.1e-35  Score=226.45  Aligned_cols=82  Identities=55%  Similarity=1.053  Sum_probs=70.3

Q ss_pred             ceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCceeeecCCcEEEEeeEeeEEeeEEEEEccCCCCCCEEEEEEeeeCC
Q 027120           64 SHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYP  143 (228)
Q Consensus        64 tH~WtVyVR~~~~edls~fIkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGEF~I~I~I~F~~d~~ekpi~i~H~L~L~~  143 (228)
                      ||+|+||||+.+++|++++|+||+|+|||||+||+|++++|||+|+|+|||||+|.|+|+|+++++++++++.|+|+|++
T Consensus         1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L~l~~   80 (84)
T PF03366_consen    1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDLKLHQ   80 (84)
T ss_dssp             -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE--SSS
T ss_pred             CcEEEEEEEeCCCCCccceEEEEEEECCCCCCCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEEEcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999877899999999999987


Q ss_pred             CC
Q 027120          144 EA  145 (228)
Q Consensus       144 ~~  145 (228)
                      ++
T Consensus        81 ~~   82 (84)
T PF03366_consen   81 DG   82 (84)
T ss_dssp             CE
T ss_pred             CC
Confidence            64

All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.

>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=2.1e-33  Score=245.01  Aligned_cols=148  Identities=36%  Similarity=0.630  Sum_probs=126.8

Q ss_pred             cceeeceEEEEeEEEccceEEcCCC--CCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCceeeecCCcEEEEe
Q 027120           34 IKRLKDVEICVPIVYGTMAFHLGRK--ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQEC  111 (228)
Q Consensus        34 ~~R~k~~~I~~pIV~Gn~A~~l~k~--~~e~~tH~WtVyVR~~~~edls~fIkKV~F~LHpSF~nP~Rvv~~PPFeVtE~  111 (228)
                      .+|+.++.++++|++| .|..++..  .+-.+||-|.+|||++++||+++||+||+|+|||||+||+|++++|||+|.|+
T Consensus         4 ~krt~r~~t~r~Iipg-ea~~~~~e~~~P~r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~Et   82 (225)
T COG5033           4 VKRTERLKTQRVIIPG-EAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKET   82 (225)
T ss_pred             ceeeEeeeeeceeccC-ccccCCccccCCchhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEEec
Confidence            6899999999999999 99999864  67789999999999999999999999999999999999999999999999999


Q ss_pred             eEeeEEeeEEEEEccCCCCCCEEEEEEeeeCCCCCCCCC-------------CCCCCeEEEeeeEEEecCCCHHHHHHHH
Q 027120          112 GWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPK-------------STKKPVVMESYNEIVFPEPAEGFFARVL  178 (228)
Q Consensus       112 GWGEF~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~~~~~-------------~~~~pVv~E~ydeIVF~nPse~f~~~L~  178 (228)
                      |||||+|.|+|||.+.++++.+..+|++.++++....+.             +....|-+.++++++|+.|-..++++|.
T Consensus        83 GWGEF~i~I~iff~~~age~~~~fyl~f~~~~Y~v~~~v~~~~~~~~l~~elsk~geve~~~~~~~~~nep~i~~~k~~~  162 (225)
T COG5033          83 GWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVDIPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLN  162 (225)
T ss_pred             ccccceEEEEEEEecCCCceEeehhhhcccccccccccccccccccchhhhhhhcCcccceeeeeecccCchhHHHHhhh
Confidence            999999999999999888886666555555554311110             1223455677999999999999999999


Q ss_pred             cCCC
Q 027120          179 NHPA  182 (228)
Q Consensus       179 ~~~~  182 (228)
                      +.+.
T Consensus       163 ~~~~  166 (225)
T COG5033         163 GAKM  166 (225)
T ss_pred             cCcc
Confidence            9883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
3rls_A	175	Crystal Structure Of Yeast Af-9 Homolog Protein Yaf		3e-30
3fk3_A	164	Structure Of The Yeats Domain, Yaf9 Length = 164		1e-28
3qrl_A	140	Crystal Structure Of The Taf14 Yeats Domain Length		3e-07
2l7e_A	131	The Structure Of A Domain From Yeast Length = 131		5e-07

>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9 Length = 175

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 17/169 (10%)
Query: 37  LKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHP 92
           +K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+VVF+LH 
Sbjct: 1   IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60
Query: 93  SFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS- 151
           ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S 
Sbjct: 61  TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120
Query: 152 -----------TKKPVVMESY-NEIVFPEPAEGFFARVLNHPAVVVPRL 188
                      +K   V   Y +EIVF EP E FF  +++ P  ++P L
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSL 169

>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9 Length = 164

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Query: 36  RLKDVEICVPIVYGTMAFHLGR----KASESQSHRWTVYVRGATNEDIGVVIKRVVFQLH 91
           R+K + +  PI+YG  A   G      A    +H WT++VRG  NEDI   IK+VVF+LH
Sbjct: 3   RIKTLSVSRPIIYGNTAKKXGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLH 62
Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS 151
            ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S
Sbjct: 63  DTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNS 122
Query: 152 ------------TKKPVVMESY-NEIVFPEPAEGFF 174
                       +K   V   Y +EIVF EP E FF
Sbjct: 123 DNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFF 158

>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain Length = 140

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80  GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
             +  +V++ LHP+F NP R    PPF ++E GWG F + IS+F 
Sbjct: 51  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 95

>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast Length = 131

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 80  GVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAISLFF 124
             +  +V++ LHP+F NP R    PPF ++E GWG F + IS+F 
Sbjct: 48  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	228
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	3e-51
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	2e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A Length = 175

 Score =  163 bits (413), Expect = 3e-51
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 17/170 (10%)

Query: 37  LKDVEICVPIVYGTMAFHLG----RKASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHP 92
           +K + +  PI+YG  A  +G      A    +H WT++VRG  NEDI   IK+VVF+LH 
Sbjct: 1   IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60

Query: 93  SFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKS- 151
           ++ NP R +E+PPFEL E GWGEF+I I ++F  +  +K L+ YH L+L+P A   P S 
Sbjct: 61  TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120

Query: 152 ------------TKKPVVMESYNEIVFPEPAEGFFARVLNHPAVVVPRLP 189
                           V    ++EIVF EP E FF  +++ P  ++P L 
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSLE 170

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A Length = 140

 Score =  126 bits (319), Expect = 2e-37
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 35  KRLKDVEICVPIVYGTMAFHLGRKASESQSHRWTVYVRGA---TNEDIGVVIKRVVFQLH 91
             +  V+  + I                   +W++ +        E    +  +V++ LH
Sbjct: 3   HMVATVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLH 62

Query: 92  PSFNNPTRVVESPPFELQECGWGEFEIAISLFFHSDVCDKPL--DLYHHLKLYPEAESGP 149
           P+F NP R    PPF ++E GWG F + IS+F      ++ +  DL    + Y       
Sbjct: 63  PTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHDLNFLQESYEVEHVIQ 122

Query: 150 KSTKKPVVMESYNE 163
               KP++ E   +
Sbjct: 123 IPLNKPLLTEELAK 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 22/208 (10%), Positives = 67/208 (32%), Gaps = 54/208 (25%)

Query: 21  IPKVPDDSEKPI-----AIKRLKDVEICVPIVYGTMAFHLGR-K---ASES-QSHR---- 66
             K      +P      A+  L+  +  +  + G +    G  K   A +   S++    
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVL--IDG-VL---GSGKTWVALDVCLSYKVQCK 179

Query: 67  ------WTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGEFEIAI 120
                 W       + E +  +++++++Q+ P++ + +    +    +        +  +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-----IQAEL 234

Query: 121 SLFFHS-----------DVCD----KPLDLYHHLKL------YPEAESGPKSTKKPVVME 159
                S           +V +       +L    K+          +    +T   + ++
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 160 SYNEIVFPEPAEGFFARVLNHPAVVVPR 187
            ++  + P+  +    + L+     +PR
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	100.0
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	100.0

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A

Probab=100.00  E-value=7.1e-55  Score=369.67  Aligned_cols=153  Identities=42%  Similarity=0.835  Sum_probs=136.4

Q ss_pred             eeceEEEEeEEEccceEEcCCC----CCCCCceeEEEEEeCCCCCCcccceeeEEEEeCCCCCCCceeeecCCcEEEEee
Q 027120           37 LKDVEICVPIVYGTMAFHLGRK----ASESQSHRWTVYVRGATNEDIGVVIKRVVFQLHPSFNNPTRVVESPPFELQECG  112 (228)
Q Consensus        37 ~k~~~I~~pIV~Gn~A~~l~k~----~~e~~tH~WtVyVR~~~~edls~fIkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  112 (228)
                      |||++|+|||||||+|++|+++    +++++||+|+||||+++++|+++||+||+|+|||||+||+|++++|||+|+|+|
T Consensus         1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G   80 (175)
T 3rls_A            1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG   80 (175)
T ss_dssp             CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred             CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence            6899999999999999999863    567899999999999999999999999999999999999999999999999999


Q ss_pred             EeeEEeeEEEEEccCCCCCCEEEEEEeeeCCCCCCC-------C------CCCCCCeEEEeeeEEEecCCCHHHHHHHHc
Q 027120          113 WGEFEIAISLFFHSDVCDKPLDLYHHLKLYPEAESG-------P------KSTKKPVVMESYNEIVFPEPAEGFFARVLN  179 (228)
Q Consensus       113 WGEF~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~~~-------~------~~~~~pVv~E~ydeIVF~nPse~f~~~L~~  179 (228)
                      ||||+|.|+|||++++++|+++|.|+|+|++++.+.       .      ..+++||++|+||||||+||+|+||++|++
T Consensus        81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~  160 (175)
T 3rls_A           81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS  160 (175)
T ss_dssp             SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred             EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence            999999999999988899999999999999986541       1      124789999999999999999999999999


Q ss_pred             CCCccCCCCC
Q 027120          180 HPAVVVPRLP  189 (228)
Q Consensus       180 ~~~~~~p~~~  189 (228)
                      +|+..+|...
T Consensus       161 ~p~~~lp~~~  170 (175)
T 3rls_A          161 RPGNLLPSLE  170 (175)
T ss_dssp             STTCCSCSSC
T ss_pred             CCCccCCCCC
Confidence            9999887443

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A

Probab=100.00  E-value=6.1e-37  Score=251.86  Aligned_cols=127  Identities=24%  Similarity=0.476  Sum_probs=107.3

Q ss_pred             EEEEeEEEccceEEcCCCC-CC-CCceeEE--EEEeCCCCCCcc-cceeeEEEEeCCCCCCCceeeecCCcEEEEeeEee
Q 027120           41 EICVPIVYGTMAFHLGRKA-SE-SQSHRWT--VYVRGATNEDIG-VVIKRVVFQLHPSFNNPTRVVESPPFELQECGWGE  115 (228)
Q Consensus        41 ~I~~pIV~Gn~A~~l~k~~-~e-~~tH~Wt--VyVR~~~~edls-~fIkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGE  115 (228)
                      .-...|+.+..  .+++.. .+ ..+|+|+  |||||.+++|++ +||+||+|+|||||+||+|++++|||+|+|+||||
T Consensus         9 krtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGe   86 (140)
T 3qrl_A            9 KRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGG   86 (140)
T ss_dssp             EEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSC
T ss_pred             EEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeee
Confidence            33344444444  666654 34 4669999  899999999885 89999999999999999999999999999999999


Q ss_pred             EEeeEEEEEccCCCCCCEEEEEEeeeCCCCCCCCCCCCCCeEEEeeeEEEecCCCHHHHHHHHcCCCc
Q 027120          116 FEIAISLFFHSDVCDKPLDLYHHLKLYPEAESGPKSTKKPVVMESYNEIVFPEPAEGFFARVLNHPAV  183 (228)
Q Consensus       116 F~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~~~~~~~~~pVv~E~ydeIVF~nPse~f~~~L~~~~~~  183 (228)
                      |+|.|+|||++++  ++++|.|+|+|+++.            .+.+++|+|+||+++|+++|++.|++
T Consensus        87 F~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp~  140 (140)
T 3qrl_A           87 FPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGST  140 (140)
T ss_dssp             CCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSCC
T ss_pred             EEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCCC
Confidence            9999999999764  578999999998653            35678999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00