Citrus Sinensis ID: 027129
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.964 | 0.522 | 0.652 | 1e-83 | |
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.850 | 0.461 | 0.733 | 3e-83 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.850 | 0.461 | 0.733 | 3e-83 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.850 | 0.461 | 0.733 | 4e-83 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.850 | 0.461 | 0.733 | 4e-83 | |
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.850 | 0.464 | 0.728 | 3e-82 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.802 | 0.6 | 0.364 | 4e-21 | |
| Q9ZAE8 | 320 | dTDP-glucose 4,6-dehydrat | yes | no | 0.754 | 0.537 | 0.343 | 1e-18 | |
| P29782 | 328 | dTDP-glucose 4,6-dehydrat | yes | no | 0.754 | 0.524 | 0.327 | 4e-17 | |
| C6DAW5 | 672 | Bifunctional polymyxin re | yes | no | 0.837 | 0.284 | 0.296 | 5e-16 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 309 bits (791), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/230 (65%), Positives = 178/230 (77%), Gaps = 10/230 (4%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKN 58
+ ++I N + K PP KF + RIL+TGGAGF+GSHL DKLM + +
Sbjct: 63 LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLM-MDGH 114
Query: 59 EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
EV VVDN+FTG K N+ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+
Sbjct: 115 EVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPI 174
Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDE
Sbjct: 175 KTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDE 234
Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
GKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 235 GKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQ 284
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (788), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 143/195 (73%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 269 NDGRVVSNFILQALQ 283
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 143/195 (73%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 269 NDGRVVSNFILQALQ 283
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 143/195 (73%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 269 NDGRVVSNFILQALQ 283
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 143/195 (73%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 269 NDGRVVSNFILQALQ 283
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 142/195 (72%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 88 RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 146
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 147 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 206
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ+E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+G RM++
Sbjct: 207 PEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHM 266
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 267 NDGRVVSNFILQALQ 281
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 20/203 (9%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTGGAGFIGSH+VDKL+EN +VI++DN TG+K+N+ +P+ E + D+ +
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55
Query: 95 LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 146
L E V+ + H A + NPV NV+GT+N+L + ++ + + +S
Sbjct: 56 LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
VYG+P P DE++ PI S Y K V E + Y+R +GIE I R N
Sbjct: 116 GGAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNV 170
Query: 207 YGPRMN-IDDGRVVSNFIAQAIR 228
YG R + + V+S FI + ++
Sbjct: 171 YGERQDPKGEAGVISIFIDKMLK 193
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 20/192 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENE------KNEVIVVDNY-FTGSKDNLRKWIGHPRFEL 85
M+ILVTGGAGFIGSH V L+ + +V VVD + G+ NL + PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSF 60
Query: 86 IRHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--V 138
+R D+ + LIE D + H A + +N++GT +L A R +
Sbjct: 61 VRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHI 120
Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
G R L ST EVYG D W +P+ S Y K ++ L YH+ HG+++
Sbjct: 121 G-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDV 174
Query: 199 RIARIFNTYGPR 210
+ R N YGPR
Sbjct: 175 VVTRCSNNYGPR 186
|
Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 14/186 (7%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY----FTGSKDNLRKWIGHPRFELIRHDV 90
+LVTG AGFIGS V L+ +VV + G+ DNL GHPR+ R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 91 TEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 145
+ ++ DQ+ HLA + + ++TNV GT +L A R G A +
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
ST EVYG + W P+ S Y K + L +H HG+++R+ R N
Sbjct: 125 STDEVYGS-----LEHGSWTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 206 TYGPRM 211
YGPR
Sbjct: 180 NYGPRQ 185
|
Involved in the biosynthesis of the streptose moiety of streptomycin. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Streptomyces griseus (taxid: 1911) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
S+ + R+L+ G GFIG+HL ++L+ +++ E+ +D S D + +++G PRF
Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 370
Query: 86 IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ D++ E + + D I L A+PI Y NP++ + + L ++ R
Sbjct: 371 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 430
Query: 140 ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGI 196
RI+ STSEVYG D +D S V PI R Y K++ + +++ Y ++G+
Sbjct: 431 KRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGL 489
Query: 197 EIRIARIFNTYGPRMN-IDDGRVVSN 221
+ R FN GPR++ +D R+ S+
Sbjct: 490 RFTLFRPFNWMGPRLDTLDAARIGSS 515
|
Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| 255575062 | 346 | dtdp-glucose 4-6-dehydratase, putative [ | 1.0 | 0.658 | 0.969 | 1e-129 | |
| 224100953 | 346 | predicted protein [Populus trichocarpa] | 1.0 | 0.658 | 0.960 | 1e-128 | |
| 225449563 | 345 | PREDICTED: UDP-glucuronic acid decarboxy | 1.0 | 0.660 | 0.960 | 1e-128 | |
| 224109544 | 346 | predicted protein [Populus trichocarpa] | 1.0 | 0.658 | 0.942 | 1e-127 | |
| 192338748 | 346 | UDP-D-glucuronate carboxy-lyase [Eucalyp | 1.0 | 0.658 | 0.925 | 1e-125 | |
| 356550259 | 348 | PREDICTED: UDP-glucuronic acid decarboxy | 1.0 | 0.655 | 0.930 | 1e-123 | |
| 358248590 | 348 | uncharacterized protein LOC100790835 [Gl | 1.0 | 0.655 | 0.930 | 1e-123 | |
| 449459910 | 344 | PREDICTED: UDP-glucuronic acid decarboxy | 1.0 | 0.662 | 0.916 | 1e-122 | |
| 388495536 | 346 | unknown [Lotus japonicus] | 1.0 | 0.658 | 0.916 | 1e-122 | |
| 48093461 | 343 | UDP-glucuronate decarboxylase 1 [Nicotia | 0.978 | 0.650 | 0.928 | 1e-122 |
| >gi|255575062|ref|XP_002528436.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gi|223532112|gb|EEF33919.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/228 (96%), Positives = 228/228 (100%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA+E+SNG+H+SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1 MAKEVSNGDHSSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IVVDNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVVDNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVR 228
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100953|ref|XP_002312082.1| predicted protein [Populus trichocarpa] gi|118487220|gb|ABK95438.1| unknown [Populus trichocarpa] gi|222851902|gb|EEE89449.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/228 (96%), Positives = 225/228 (98%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA+E SNGNHNSA+K PPTPSPLRFSK+FQSNMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1 MAKEASNGNHNSATKAPPTPSPLRFSKYFQSNMRILVTGGAGFIGSHLVDRLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449563|ref|XP_002283871.1| PREDICTED: UDP-glucuronic acid decarboxylase 1 [Vitis vinifera] gi|147766093|emb|CAN65700.1| hypothetical protein VITISV_010481 [Vitis vinifera] gi|296086255|emb|CBI31696.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/228 (96%), Positives = 225/228 (98%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA+E+SNG+HNS +KPPPTPSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct: 1 MAKEVSNGDHNSVTKPPPTPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109544|ref|XP_002315231.1| predicted protein [Populus trichocarpa] gi|118483816|gb|ABK93800.1| unknown [Populus trichocarpa] gi|118485318|gb|ABK94518.1| unknown [Populus trichocarpa] gi|222864271|gb|EEF01402.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/228 (94%), Positives = 225/228 (98%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
M++E SNG+HNSA+K PPTPSPLRFSKFFQSNMRIL+TGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1 MSKEASNGDHNSAAKAPPTPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQNESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|192338748|gb|ACF04279.1| UDP-D-glucuronate carboxy-lyase [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/228 (92%), Positives = 223/228 (97%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA++ SNG ++S +KPPPTPSPLRFSKFFQ NMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1 MAKQASNGENHSVAKPPPTPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DN+FTG+K+NL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNFFTGTKENLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIR+ARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 181 RVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQAVR 228
|
Source: Eucalyptus grandis Species: Eucalyptus grandis Genus: Eucalyptus Family: Myrtaceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550259|ref|XP_003543505.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/230 (93%), Positives = 220/230 (95%), Gaps = 2/230 (0%)
Query: 1 MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
MA + SNGN H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1 MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60
Query: 59 EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61 EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120
Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDE
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDE 180
Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248590|ref|NP_001239907.1| uncharacterized protein LOC100790835 [Glycine max] gi|255641885|gb|ACU21211.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/230 (93%), Positives = 220/230 (95%), Gaps = 2/230 (0%)
Query: 1 MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
MA + SNGN H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1 MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60
Query: 59 EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61 EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120
Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDE
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDE 180
Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459910|ref|XP_004147689.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449523904|ref|XP_004168963.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/228 (91%), Positives = 220/228 (96%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA++ SNG+ +++K PP PSPLR +KFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1 MAKQSSNGDFYTSTKAPPPPSPLRSAKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
KTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 TKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNF+AQAIR
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIR 228
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495536|gb|AFK35834.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/228 (91%), Positives = 217/228 (95%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA + SNG+H A K PP PSPLRFSKFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1 MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DN+FTGSKDNL+KWIGHPRFELIRHDVTE LL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61 IVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKT 120
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGK 180
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYH QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR
Sbjct: 181 RVAETLMFDYHTQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|48093461|gb|AAT40107.1| UDP-glucuronate decarboxylase 1 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust.
Identities = 207/223 (92%), Positives = 219/223 (98%)
Query: 6 SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
SNGN++ ++KPPP PSPLR +KFFQ+NMRILVTGGAGFIGSHLVDKLMENEKNEV+VVDN
Sbjct: 3 SNGNNHVSTKPPPEPSPLRKAKFFQANMRILVTGGAGFIGSHLVDKLMENEKNEVVVVDN 62
Query: 66 YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
YFTGSKDNL++WIGHPRFELIRHDVTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNV
Sbjct: 63 YFTGSKDNLKQWIGHPRFELIRHDVTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNV 122
Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185
+GT+NMLGLAKR GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET
Sbjct: 123 LGTMNMLGLAKRTGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 182
Query: 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR
Sbjct: 183 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 225
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.991 | 0.658 | 0.921 | 1.8e-112 | |
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.982 | 0.656 | 0.910 | 5.3e-111 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.951 | 0.607 | 0.921 | 2.6e-109 | |
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.868 | 0.444 | 0.758 | 1.2e-81 | |
| TIGR_CMR|GSU_1815 | 311 | GSU_1815 "NAD-dependent epimer | 0.855 | 0.627 | 0.729 | 7.9e-78 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.899 | 0.486 | 0.700 | 2.7e-77 | |
| UNIPROTKB|E1BMI4 | 420 | UXS1 "Uncharacterized protein" | 0.899 | 0.488 | 0.705 | 3.4e-77 | |
| UNIPROTKB|F1PU61 | 414 | UXS1 "Uncharacterized protein" | 0.899 | 0.495 | 0.700 | 3.4e-77 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.899 | 0.564 | 0.700 | 3.4e-77 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.899 | 0.488 | 0.700 | 3.4e-77 |
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 210/228 (92%), Positives = 216/228 (94%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
MA SNG + +KPPP PSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct: 1 MASNSSNGT--TTTKPPPMPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 58
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPL +EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 59 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQIYHLACPASPIFYKYNPVKT 118
Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDEGK
Sbjct: 119 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTESYWGNVNPIGVRSCYDEGK 178
Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 179 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 226
|
|
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 204/224 (91%), Positives = 216/224 (96%)
Query: 5 ISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
+++ + ++ KPPP+PSPLR SKF QSNMRIL++GGAGFIGSHLVDKLMENEKNEVIV D
Sbjct: 1 MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVAD 60
Query: 65 NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 124
NYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct: 61 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 120
Query: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184
VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGKRVAE
Sbjct: 121 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAE 180
Query: 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 181 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 224
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 200/217 (92%), Positives = 211/217 (97%)
Query: 12 SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
+ +KPPP+PSPLR SKF Q NMRIL++GGAGFIGSHLVDKLMENEKNEV+V DNYFTGSK
Sbjct: 24 NTTKPPPSPSPLRNSKFCQPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSK 83
Query: 72 DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
+NL+KWIGHPRFELIRHDVTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNVIGTLNM
Sbjct: 84 ENLKKWIGHPRFELIRHDVTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 143
Query: 132 LGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 191
LGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGKRVAETLMFDYH
Sbjct: 144 LGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 203
Query: 192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R
Sbjct: 204 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALR 240
|
|
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 151/199 (75%), Positives = 173/199 (86%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ +R++VTGGAGF+GSHLVD+LM + VIVVDN+FTG K+N+ +P FE+IRHD
Sbjct: 116 RKGLRVVVTGGAGFVGSHLVDRLMARG-DTVIVVDNFFTGRKENVMHHFSNPNFEMIRHD 174
Query: 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGP
Sbjct: 235 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGP 294
Query: 210 RMNIDDGRVVSNFIAQAIR 228
RM IDDGRVVSNF+AQA+R
Sbjct: 295 RMCIDDGRVVSNFVAQALR 313
|
|
| TIGR_CMR|GSU_1815 GSU_1815 "NAD-dependent epimerase/dehydratase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 143/196 (72%), Positives = 174/196 (88%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MRILVTGGAGFIGSHL ++L+E + ++V+ +DN+FTGSK N+ + + RFE+IRHD+ E
Sbjct: 1 MRILVTGGAGFIGSHLCERLLE-QGHDVLCLDNFFTGSKRNIDRLMDFHRFEVIRHDIIE 59
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
P+L+EVD+IY+LACPASP+ Y+YNPVKTIKT+V+GT+NMLGLAKRV ARIL STSEVYG
Sbjct: 60 PILLEVDRIYNLACPASPVHYQYNPVKTIKTSVMGTINMLGLAKRVRARILQASTSEVYG 119
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
DP +HPQ ESYWGNVNPIG+RSCYDEGKRVAETL+ DYHRQ+G++IRIARIFNTYGPRM
Sbjct: 120 DPTIHPQPESYWGNVNPIGIRSCYDEGKRVAETLLMDYHRQNGVDIRIARIFNTYGPRMA 179
Query: 213 IDDGRVVSNFIAQAIR 228
DGRVVSNF+ QA+R
Sbjct: 180 EHDGRVVSNFVVQALR 195
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 145/207 (70%), Positives = 172/207 (83%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
P++F + RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH
Sbjct: 80 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 137
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct: 138 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 197
Query: 142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
+LL STSEVYGDP VHPQ+E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct: 198 LLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 257
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 258 RIFNTFGPRMHMNDGRVVSNFILQALQ 284
|
|
| UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 146/207 (70%), Positives = 171/207 (82%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
P++F + RILVTGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH
Sbjct: 79 PVKFLSE-KDRKRILVTGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct: 137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196
Query: 142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct: 197 LLLASTSEVYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQ 283
|
|
| UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 145/207 (70%), Positives = 171/207 (82%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
P++F + RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH
Sbjct: 73 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 130
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct: 131 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 190
Query: 142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct: 191 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 250
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 251 RIFNTFGPRMHMNDGRVVSNFILQALQ 277
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 145/207 (70%), Positives = 171/207 (82%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
P++F + RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH
Sbjct: 22 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 79
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct: 80 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 139
Query: 142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct: 140 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 199
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 200 RIFNTFGPRMHMNDGRVVSNFILQALQ 226
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 145/207 (70%), Positives = 171/207 (82%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
P++F + RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH
Sbjct: 79 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136
Query: 82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct: 137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196
Query: 142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
RIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQ 283
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5R885 | UXS1_PONAB | 4, ., 1, ., 1, ., 3, 5 | 0.7333 | 0.8508 | 0.4619 | yes | no |
| Q8NBZ7 | UXS1_HUMAN | 4, ., 1, ., 1, ., 3, 5 | 0.7333 | 0.8508 | 0.4619 | yes | no |
| Q6GMI9 | UXS1_DANRE | 4, ., 1, ., 1, ., 3, 5 | 0.7282 | 0.8508 | 0.4641 | yes | no |
| Q5PQX0 | UXS1_RAT | 4, ., 1, ., 1, ., 3, 5 | 0.7333 | 0.8508 | 0.4619 | yes | no |
| Q91XL3 | UXS1_MOUSE | 4, ., 1, ., 1, ., 3, 5 | 0.7333 | 0.8508 | 0.4619 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 228 | |||
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 1e-148 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-123 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 1e-120 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-48 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 1e-47 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 9e-44 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-41 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 5e-39 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-37 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 1e-30 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 2e-28 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 6e-26 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 7e-26 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 4e-25 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 8e-25 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 5e-24 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-23 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 2e-23 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 5e-23 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 1e-22 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-19 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 3e-19 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 1e-18 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-16 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 4e-16 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 4e-15 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 1e-14 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 1e-14 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 7e-14 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 7e-14 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 2e-13 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 5e-13 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 9e-13 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 1e-12 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-12 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 5e-12 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 7e-12 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-11 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 3e-11 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 4e-11 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 6e-11 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-10 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-10 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-10 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-10 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-10 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 8e-10 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 3e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 3e-09 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 3e-09 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 3e-09 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 5e-09 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 8e-09 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 9e-09 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-08 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 7e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 8e-08 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 1e-07 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 4e-07 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 8e-07 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 1e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-06 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-06 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 3e-06 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 3e-06 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 5e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 1e-05 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 1e-05 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 2e-05 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 4e-05 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 5e-05 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 6e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 8e-05 | |
| PLN02214 | 342 | PLN02214, PLN02214, cinnamoyl-CoA reductase | 1e-04 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 3e-04 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 4e-04 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 4e-04 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 0.002 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 0.002 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 0.002 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 414 bits (1066), Expect = e-148
Identities = 151/196 (77%), Positives = 172/196 (87%), Gaps = 1/196 (0%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
RIL+TGGAGF+GSHL D+L+ + +EVI VDN+FTG K N+ IGHP FE IRHDVTE
Sbjct: 1 KRILITGGAGFLGSHLCDRLL-EDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTE 59
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
PL +EVDQIYHLACPASP+ Y+YNP+KT+KTNV+GTLNMLGLAKRVGAR+LL STSEVYG
Sbjct: 60 PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYG 119
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
DP VHPQ ESYWGNVNPIG RSCYDEGKRVAETL YHRQHG+++RIARIFNTYGPRM+
Sbjct: 120 DPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMH 179
Query: 213 IDDGRVVSNFIAQAIR 228
+DGRVVSNFI QA+R
Sbjct: 180 PNDGRVVSNFIVQALR 195
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-123
Identities = 152/196 (77%), Positives = 172/196 (87%), Gaps = 1/196 (0%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
+R++VTGGAGF+GSHLVD+LM + VIVVDN+FTG K+N+ +P FELIRHDV E
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 179 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
DPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR +E+RIARIFNTYGPRM
Sbjct: 239 DPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMC 298
Query: 213 IDDGRVVSNFIAQAIR 228
IDDGRVVSNF+AQA+R
Sbjct: 299 IDDGRVVSNFVAQALR 314
|
Length = 442 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-120
Identities = 156/199 (78%), Positives = 175/199 (87%), Gaps = 1/199 (0%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ +RI+VTGGAGF+GSHLVDKL+ +EVIV+DN+FTG K+NL G+PRFELIRHD
Sbjct: 118 RKRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176
Query: 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
V EP+L+EVDQIYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
VYGDPL HPQ E+YWGNVNPIG RSCYDEGKR AETL DYHR G+E+RIARIFNTYGP
Sbjct: 237 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGP 296
Query: 210 RMNIDDGRVVSNFIAQAIR 228
RM +DDGRVVSNF+AQ IR
Sbjct: 297 RMCLDDGRVVSNFVAQTIR 315
|
Length = 436 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-48
Identities = 75/201 (37%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MRILVTGGAGFIGSHLV++L+ ++V +D G + +L D+ +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPL-LSGVEFVVLDLTDRDLVD 58
Query: 93 PLLIEV-DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST-S 148
L V D + HLA +S +P + + NV GTLN+L A+ G R + S+ S
Sbjct: 59 ELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
VYGDP P DE G P + Y K AE L+ Y R +G+ + I R FN YG
Sbjct: 119 VVYGDPPPLPIDEDL-GPPRP---LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYG 174
Query: 209 PRMNID-DGRVVSNFIAQAIR 228
P D VVS FI Q ++
Sbjct: 175 PGDKPDLSSGVVSAFIRQLLK 195
|
Length = 314 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-47
Identities = 80/205 (39%), Positives = 115/205 (56%), Gaps = 20/205 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+LVTGGAGFIGSHLV++L+E +EVIV+DN TG K+NL + P + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPE--VKPNVKFIEGDIRDD 57
Query: 92 ---EPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
E VD ++H A AS P + +P+K + NV+GTLN+L A++ G R + S
Sbjct: 58 ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTLNLLEAARKAGVKRFVYAS 116
Query: 147 TSEVYGDPLVHPQDESYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
+S VYGDP P+DE + N ++P V K E + R +G+ R FN
Sbjct: 117 SSSVYGDPPYLPKDEDHPPNPLSPYAV------SKYAGELYCQVFARLYGLPTVSLRYFN 170
Query: 206 TYGPRMNIDDGR--VVSNFIAQAIR 228
YGPR + + G V+ FI +A++
Sbjct: 171 VYGPRQDPNGGYAAVIPIFIERALK 195
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 9e-44
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
+LVTG GFIGSHL ++L+ E +EV +D Y + + L H RF I DV +
Sbjct: 1 NVLVTGADGFIGSHLTERLLR-EGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDA 59
Query: 94 LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST 147
+E D ++HLA + + P+ ++TNV GTLN+L A + R++ TST
Sbjct: 60 SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTST 119
Query: 148 SEVYGDPLVHPQDESYWGNVNPIGV----RSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
SEVYG P DE +P+ RS Y K+ A+ L + Y R G+ + I R
Sbjct: 120 SEVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174
Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIR 228
FNTYGPR V+ I+Q
Sbjct: 175 FNTYGPRQ--SARAVIPTIISQRAI 197
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-41
Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 39/195 (20%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTGGAGFIGSHLV +L +EV+V+D
Sbjct: 1 ILVTGGAGFIGSHLVRRL-LERGHEVVVIDRL---------------------------- 31
Query: 95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
D + HLA NP + +TNV+GTLN+L A++ G R + S++ VYG
Sbjct: 32 ----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGS 87
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P P++E P+ S Y K AE L+ Y +G+ + I R+ N YGP
Sbjct: 88 PEGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRP 142
Query: 214 DDGRVVSNFIAQAIR 228
VV++FI +A+
Sbjct: 143 RLDGVVNDFIRRALE 157
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 5e-39
Identities = 72/195 (36%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RILVTGGAGFIGSHLVD+L+E E NEV+VVDN +G ++N+ + F ++ D+ +
Sbjct: 1 RILVTGGAGFIGSHLVDRLLE-EGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59
Query: 94 L----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
+ D ++HLA +P ++ NV+ T N+L + G RI+ S+S
Sbjct: 60 ADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASSS 119
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
VYG+ V P E Y PI S Y K AE L+ Y G + I R N G
Sbjct: 120 TVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIVG 174
Query: 209 PRMNIDDGRVVSNFI 223
PR V+ +FI
Sbjct: 175 PRST---HGVIYDFI 186
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-37
Identities = 68/207 (32%), Positives = 93/207 (44%), Gaps = 29/207 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTGG GFIGSHLV +L++ V + + R D+T+P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEG----YEVIVLGRRRRSES---LNTGRIRFHEGDLTDPD 53
Query: 95 LIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
+E D + HLA AS +P I+ NV+GTL +L A+R G R
Sbjct: 54 ALERLLAEVQPDAVIHLAAQSGVGAS----FEDPADFIRANVLGTLRLLEAARRAGVKRF 109
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ S+SEVYGD P E P+G S Y K AE L+ Y R +G+ I R
Sbjct: 110 VFASSSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILR 164
Query: 203 IFNTYGPR-MNIDDGRVVSNFIAQAIR 228
+FN YGP + V+ I + +
Sbjct: 165 LFNVYGPGNPDPFVTHVIPALIRRILE 191
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-30
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
M+ILVTGGAGFIGS+ V L+ + ++I +D + G+ +NL PR+ ++ D+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60
Query: 91 TEPLLI-------EVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ L+ ++D + H A S I +P I+TNV+GT +L A++ G
Sbjct: 61 CDAELVDRLFEEEKIDAVIHFAAESHVDRS-I---SDPEPFIRTNVLGTYTLLEAARKYG 116
Query: 140 A-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
R + ST EVYGD E+ + P S Y K A+ L+ YHR +G+
Sbjct: 117 VKRFVHISTDEVYGDLLDDGEFTETS--PLAP---TSPYSASKAAADLLVRAYHRTYGLP 171
Query: 198 IRIARIFNTYGPR 210
+ I R N YGP
Sbjct: 172 VVITRCSNNYGPY 184
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-28
Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDVT 91
+LVTG GFIGSHLV+ L+ V+ N F G D + + E++ D+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEV-KDKIEVVTGDIR 59
Query: 92 EPLLIE-----VDQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
+P + D ++HLA + I Y Y P + TNV GTLN+L A+ +G +++
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIA-IPYSYIAPDSYVDTNVTGTLNVLQAARDLGVEKVVH 118
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
TSTSEVYG P DE + P+ +S Y K A+ L ++R + I R F
Sbjct: 119 TSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVTIIRPF 173
Query: 205 NTYGPR 210
NTYGPR
Sbjct: 174 NTYGPR 179
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-26
Identities = 65/227 (28%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIGHPRFELIRH 88
MR+L+TGGAGFIGS+L ++ EVI DN G+ L+ +
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59
Query: 89 DV-----TEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A 140
D+ E L ++D I H A P+ +P +TN +GTLN+L A++ A
Sbjct: 60 DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSAS-SPRLDFETNALGTLNVLEAARQHAPNA 118
Query: 141 RILLTSTSEVYGD-----PLVHPQDESYW----GNVNPIGV---------RSCYDEGKRV 182
+ TST++VYGD PL + E+ + +P G+ S Y K
Sbjct: 119 PFIFTSTNKVYGDLPNYLPLE--ELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGA 176
Query: 183 AETLMFDYHRQHGIEIRIARIFNTYGPR-MNIDDGRVVSNFIAQAIR 228
A+ + +Y R G++ + R GPR +D V+ F+ A+
Sbjct: 177 ADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVT 223
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-26
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 22/193 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHD 89
M+ILVTGGAGFIGS+ V ++ + V+ +D Y G+ +NL PR+ ++ D
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGD 59
Query: 90 VTEPLLIE-------VDQIYHLACPAS---PIFYKYNPVKTIKTNVIGTLNMLGLAKR-- 137
+ + L++ D + H A + I P I+TNV+GT +L A++
Sbjct: 60 ICDRELVDRLFKEYQPDAVVHFAAESHVDRSI---DGPAPFIQTNVVGTYTLLEAARKYW 116
Query: 138 VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
R ST EVYGD D+ + P S Y K ++ L+ Y R +G+
Sbjct: 117 GKFRFHHISTDEVYGD---LGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLP 173
Query: 198 IRIARIFNTYGPR 210
I R N YGP
Sbjct: 174 ATITRCSNNYGPY 186
|
Length = 340 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 4e-25
Identities = 61/209 (29%), Positives = 84/209 (40%), Gaps = 25/209 (11%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRH 88
R L+TG G GS+L + L+E EV + S I H R L
Sbjct: 1 RALITGITGQDGSYLAEFLLEK-GYEVHGIV---RRSSSFNTDRIDHLYINKDRITLHYG 56
Query: 89 DVTEPL-LIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVG 139
D+T+ L D+IYHLA + +P T + N +GTLN+L + +
Sbjct: 57 DLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLD 116
Query: 140 ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
AR S+SE YG PQ E+ P RS Y K A+ + +Y +G+
Sbjct: 117 ARFYQASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAV 171
Query: 200 IARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
R+FN GPR V Q R
Sbjct: 172 NGRLFNHEGPRRGETF--VTRKITRQVAR 198
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 8e-25
Identities = 57/194 (29%), Positives = 76/194 (39%), Gaps = 17/194 (8%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
R LVTG GFIGSHL ++L E + V D +L +
Sbjct: 2 RALVTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 94 LLIEVDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
VD ++HLA + Y + N + N + NML A+ G R L S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
Query: 152 GDPLVHPQDESYWGNVN--------PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
P+ + V P + Y K E L Y+ +GIE RI R
Sbjct: 121 ------PEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRF 174
Query: 204 FNTYGPRMNIDDGR 217
N YGPR D GR
Sbjct: 175 HNIYGPRGTWDGGR 188
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 5e-24
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
++LVTGGAG+IGSH V +L+E +V+V+DN G ++ L I R E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDR 58
Query: 94 LLIE-------VDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVGA 140
++ +D + H A K P+K NV+GTLN+L + G
Sbjct: 59 AALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGV 112
Query: 141 -RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
+ +S++ VYG+P P E P+ + Y K + E ++ D + G+
Sbjct: 113 KNFVFSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYV 167
Query: 200 IARIFN 205
I R FN
Sbjct: 168 ILRYFN 173
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-23
Identities = 63/203 (31%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
R+L+ GG GFIGSHLVD L+E V V D L + I+ D
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQ-VRVFDRSI--PPYELPLG----GVDYIKGDYENR 53
Query: 94 LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL--AKRVGARILLTS 146
+E +D + HLA +P NP+ I+TNV T+ +L A +G I +S
Sbjct: 54 ADLESALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
VYG P P ES PI S Y K E + Y +G++ + RI N
Sbjct: 114 GGTVYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 207 YGPRMNIDDGR-VVSNFIAQAIR 228
YGP D + V+ + + +R
Sbjct: 169 YGPGQRPDGKQGVIPIALNKILR 191
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 30/190 (15%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
M++LVTGGAG+IGSH V +L++ +EV+V+DN G K L K + D+
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLD 55
Query: 92 EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
LL V D + H A NP+K NV+GTLN++ + G
Sbjct: 56 RALLTAVFEENKIDAVVHFAA------SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109
Query: 140 AR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
+ + +ST+ VYG+P P E+ P+ + Y K ++E ++ D + + ++
Sbjct: 110 VKKFIFSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKV 164
Query: 199 RIARIFNTYG 208
I R FN G
Sbjct: 165 VILRYFNVAG 174
|
Length = 329 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 5e-23
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 34 RILVTGGAGFIGSHLVDK-LMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
RILVTGGAGFIGS+ V L E+ EVIV+D + G+ +NL +PR+ ++ D+
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 92 EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARI 142
+ L+ + D + H A + P I+TNV+GT +L ++ R
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
ST EVYGD + + P+ S Y K ++ L+ YHR +G+ I R
Sbjct: 121 HHISTDEVYGD----LEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 203 IFNTYGP 209
N YGP
Sbjct: 177 CSNNYGP 183
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-22
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR-FELIRHDVTE 92
+ILVTGGAG+IGSH V +L+E+ EV+++DN GS++ L + D+ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGH-EVVILDNLSNGSREAL-PRGERITPVTFVEGDLRD 58
Query: 93 PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
L+ ++D + H A + P+K + NV+GTLN+L ++ G + +
Sbjct: 59 RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIF 118
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR-QHGIEIRIARI 203
+S++ VYG+P P E P+G + Y K ++E ++ D + I R
Sbjct: 119 SSSAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRY 173
Query: 204 FNTYG 208
FN G
Sbjct: 174 FNVAG 178
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 59/191 (30%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN---YFTGS--KDNLRKWIGHPRFELIR 87
M+ILVTG AGFIG H+ +L+E +EV+ +DN Y+ + L F+ ++
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59
Query: 88 HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140
D+ + + E D + HLA A + NP + +N++G LN+L L + G
Sbjct: 60 GDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119
Query: 141 R-ILLTSTSEVYGDPLVHPQDESYWGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
+ ++ S+S VYG P E V+ PI S Y K+ E + Y +GI
Sbjct: 120 KHLVYASSSSVYGLNTKMPFSED--DRVDHPI---SLYAATKKANELMAHTYSHLYGIPT 174
Query: 199 RIARIFNTYGP 209
R F YGP
Sbjct: 175 TGLRFFTVYGP 185
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-----WIGHPRF-ELIR 87
I+VTGGAGFIGS+LV L E +++VVDN G K NL +I F + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 88 HDVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
E IE I+H AC + + + N T +L R + S
Sbjct: 62 KG-DENFKIEA--IFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQHGIE--IRIA-- 201
++ VYG+ + ++ N+ P+ V Y K L+FD + R+HG E ++
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNV---YGYSK-----LLFDQWARRHGKEVLSQVVGL 167
Query: 202 RIFNTYGPR 210
R FN YGPR
Sbjct: 168 RYFNVYGPR 176
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-18
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 24/204 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFEL--I 86
+ I + G GFIGSHL +KLM ++V+ +D Y K L W G +F I
Sbjct: 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74
Query: 87 RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
+HD LI++ D +LA +P Y P+ TI +N I L ++ R++
Sbjct: 75 KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134
Query: 146 STSEVYGD------PLVHP--QDESYW---GNVNPI------GVRSCYDEGKRVAETLMF 188
ST EVYG P HP QD +++ + +P R Y K++ E L++
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIY 194
Query: 189 DYHRQHGIEIRIARIFNTYGPRMN 212
++G+E I R FN GPRM+
Sbjct: 195 AEGAENGLEFTIVRPFNWIGPRMD 218
|
Length = 386 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 59/213 (27%), Positives = 83/213 (38%), Gaps = 48/213 (22%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELIR 87
ILVTGGAG IGS LV ++++ ++IV D LR H + I
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60
Query: 88 HDVTEPLLI-------EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGL 134
DV + + D ++H A K NP + IKTNV+GT N++
Sbjct: 61 GDVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDA 114
Query: 135 AKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
A G + + ST D++ VNP+ V KRVAE L+ +
Sbjct: 115 AIENGVEKFVCIST------------DKA----VNPVNV---MGATKRVAEKLLLAKNEY 155
Query: 194 HG-IEIRIARIFNTYGPRMNIDDGRVVSNFIAQ 225
+ R N G R G V+ F Q
Sbjct: 156 SSSTKFSTVRFGNVLGSR-----GSVLPLFKKQ 183
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-16
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M++L+TGGAG IGSHL++ L+E ++V+V+DN+ TG +++L HP ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLER-GHQVVVIDNFATGRREHLPD---HPNLTVVEGSIAD 56
Query: 93 PLLIEV-------DQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA-R 141
L++ D + H A A+ YK +P + TNV+G N++ AK+ G R
Sbjct: 57 KALVDKLFGDFKPDAVVHTA--AA---YK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKR 110
Query: 142 ILLTSTSEVYGDP-------LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
++ T+ YG L HP P G S Y K E Y
Sbjct: 111 LIYFQTALCYGLKPMQQPIRLDHP--------RAPPG--SSYAISKTAGE----YYLELS 156
Query: 195 GIEIRIARIFNTYGPR 210
G++ R+ N GPR
Sbjct: 157 GVDFVTFRLANVTGPR 172
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 4e-15
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
+IL+TGGAGFIGS LV ++ + V+VVD + G+ +L RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 93 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
+ D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
K+ R ST EVYGD +H D+ ++ P S Y K ++ L+ + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 196 IEIRIARIFNTYGP 209
+ I N YGP
Sbjct: 180 LPTLITNCSNNYGP 193
|
Length = 355 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-14
Identities = 58/215 (26%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
++L+ G GFIG HL +++E EV +D D L + HPR D+T
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57
Query: 92 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
E + + D I L A+P Y P++ + + L ++ A + G ++ S
Sbjct: 58 NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117
Query: 147 TSEVYG---DPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
TSEVYG D P + S +G +N R Y K++ + +++ Y + G+ +
Sbjct: 118 TSEVYGMCPDEEFDP-EASPLVYGPINK--PRWIYACSKQLMDRVIWAYGMEEGLNFTLF 174
Query: 202 RIFNTYGPRMNIDD--------GRVVSNFIAQAIR 228
R FN GP + D RVV+ F+ +R
Sbjct: 175 RPFNWIGPGL--DSIYTPKEGSSRVVTQFLGHIVR 207
|
Length = 347 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 19/173 (10%)
Query: 35 ILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
ILVTG GF+GS+LV L+ + +V GS L E++ D+T+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRALVRS----GSDAVLLD---GLPVEVVEGDLTDA 53
Query: 94 LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
+ D+++HLA S + K + +TNV GT N+L A G R++ TS+
Sbjct: 54 ASLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSS 111
Query: 148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
G P DE+ N + Y K +AE + + + G+++ I
Sbjct: 112 IAALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAELEVLEAAAE-GLDVVI 161
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-14
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
M+ILVTGGAGFIGS +V ++ N ++ V+ VD + G+ ++L R+ D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 92 EPLLIEVDQIY---------HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA------- 135
+ E+D+I+ HLA + P I+TN++GT +L A
Sbjct: 61 D--RAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118
Query: 136 ---KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETL 186
K+ R ST EVYGD L HP + + S Y K ++ L
Sbjct: 119 DEDKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177
Query: 187 MFDYHRQHGIEIRIARIFNTYGP 209
+ + R +G+ + N YGP
Sbjct: 178 VRAWLRTYGLPTIVTNCSNNYGP 200
|
Length = 352 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-14
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 28/189 (14%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
I+VTGGAGFIGS+LV L E +++VVDN G K NL +I + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLAD-------LVIADYIDKE 53
Query: 94 LLIE---------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
++ ++ I+H AC + + + ++ N + +L G +
Sbjct: 54 DFLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFI 110
Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
S++ YGD + +N G + +D+ V ++ + + +
Sbjct: 111 YASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQ--YVRRRVLPEALSAQVVGL--- 165
Query: 202 RIFNTYGPR 210
R FN YGPR
Sbjct: 166 RYFNVYGPR 174
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 57/234 (24%), Positives = 83/234 (35%), Gaps = 57/234 (24%)
Query: 15 KPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--------- 65
+PP +LVTGG G IGS L ++++ E+I+
Sbjct: 234 RPPVALDTELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292
Query: 66 -YFTGSKDNLRKW--IGHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------Y 115
L+ IG R + + + +VD ++H A K Y
Sbjct: 293 MELREKFPELKLRFYIGDVRDRDRVERAMEG---HKVDIVFHAAA------LKHVPLVEY 343
Query: 116 NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174
NP + IKTNV+GT N+ A + G + +L ST + VNP V
Sbjct: 344 NPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA----------------VNPTNV-- 385
Query: 175 CYDEGKRVAETLMFDYHRQHGIE---IRIARIFNTYGPRMNIDDGRVVSNFIAQ 225
KR+AE L +R + R N G R G V+ F Q
Sbjct: 386 -MGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQ 433
|
Length = 588 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-13
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 22/187 (11%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
+LVTGG+GF G LV +L+E V D G L W HP E ++ D+T+
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA--LSAW-QHPNIEFLKGDITDR 57
Query: 94 LLIE-----VDQIYHLACPASPIFYKYNPVKTI-KTNVIGTLNMLGLAKRVGARILL-TS 146
+E D ++H A P + NV GT N+L +R G + + TS
Sbjct: 58 NDVEQALSGADCVFHTAAIVPL----AGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113
Query: 147 TSEV-YGDPLVHPQDESYWGNVNPIGVRS--CYDEGKRVAETLMFDYHRQHGIEIRIARI 203
+S V +G +H DE+ P Y E K +AE ++ + + + + R
Sbjct: 114 SSSVIFGGQNIHNGDETL-----PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168
Query: 204 FNTYGPR 210
+GP
Sbjct: 169 AGIFGPG 175
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 9e-13
Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 22/208 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
R+L+ G GFIG+HL ++L+ ++ EV +D GS D + +++GHPRF + D++
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEVYGLD---IGS-DAISRFLGHPRFHFVEGDISIH 372
Query: 92 ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
E + + D + L A+PI Y NP++ + + L ++ + RI+ ST
Sbjct: 373 SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPST 432
Query: 148 SEVYG---DPLVHPQDESYWGN--VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
SEVYG D +D S N V PI R Y K++ + +++ Y + G+ +
Sbjct: 433 SEVYGMCTDK-YFDEDTS---NLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLF 488
Query: 202 RIFNTYGPRM-NIDDGRV-VSNFIAQAI 227
R FN GPR+ N++ R+ S I Q I
Sbjct: 489 RPFNWMGPRLDNLNAARIGSSRAITQLI 516
|
Length = 660 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 61/191 (31%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDVT 91
IL+TG AGFI SH+ ++L+ N + +++V+D +Y + K NL P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67
Query: 92 EP-----LLI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
LLI +D I H A N + K N+ GT +L K G R
Sbjct: 68 SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
Query: 143 LLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
+ ST EVYG D V + S NP Y K AE L+ Y R +G+ +
Sbjct: 128 IHVSTDEVYGETDEDADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPV 181
Query: 199 RIARIFNTYGP 209
R N YGP
Sbjct: 182 ITTRGNNVYGP 192
|
Length = 668 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-12
Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M++L+TG +GF+G L ++L+ + NE +++ + + + G PR I D+
Sbjct: 1 MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPS-----GAPRVTQIAGDLAV 55
Query: 93 PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
P LIE D ++HLA S + + NV GT N+L ++ G R +
Sbjct: 56 PALIEALANGRPDVVFHLAAIVSGGAEA-DFDLGYRVNVDGTRNLLEALRKNGPKPRFVF 114
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
TS+ VYG PL +P + ++P S Y K + E L+ DY R+ ++ R R+
Sbjct: 115 TSSLAVYGLPLPNPVTDHT--ALDPA---SSYGAQKAMCELLLNDYSRRGFVDGRTLRL- 168
Query: 205 NTYGPRMNIDDGRVVSNFIAQAI 227
P + + GR N A A
Sbjct: 169 ----PTVCVRPGR--PNKAASAF 185
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 5e-12
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 42/178 (23%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVT 91
+LVTGG G IGS L ++++ ++I+ + LR+ P+ DV
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVR 60
Query: 92 EPLLIE-------VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKRV 138
+ +E VD ++H A K YNP++ IKTNV+GT N+ A
Sbjct: 61 DRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIEN 114
Query: 139 GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
G + +L ST D++ VNP V KR+AE L +R+ G
Sbjct: 115 GVEKFVLIST------------DKA----VNPTNV---MGATKRLAEKLFQAANRESG 153
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-12
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 23/193 (11%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEV--IVVDNY-FTGSKDNLRK--WIGHPRFELIRH 88
L+TG G GS+L +L+ + EV I + F + +L + + PR L
Sbjct: 4 VALITGITGQDGSYLA-ELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62
Query: 89 DVTEP-----LLIEV--DQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
D+T+ +L EV D+IY+LA + + ++ P T + IGTL +L + +G
Sbjct: 63 DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGE 121
Query: 140 --ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
R STSE+YG PQ E+ P RS Y K A + +Y +G+
Sbjct: 122 KKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLF 176
Query: 198 IRIARIFNTYGPR 210
+FN P
Sbjct: 177 ACNGILFNHESPL 189
|
Length = 345 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 36 LVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
LVTGG GF+G H+V L+ E E EV V D F+ + I DVT+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQ--VITYIEGDVTDKQ 58
Query: 94 ----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTS 148
L D + H A +F K +K NV GT N+L + G R+L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 149 EV-----YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL--------MFDYHRQHG 195
EV YG P+V+ + + + + Y E K +AE L + + R +
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVLKANGSTLKNGGRLYT 173
Query: 196 IEIRIARIFNTYGPRM 211
+R A IF P +
Sbjct: 174 CALRPAGIFGEGDPFL 189
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 37 VTGGAGFIGSHLVDKLMENEKNEVIVV----DNYFTGSKDNLRKWIGHPRFELIRH---- 88
+TG GF+G L++KL+ + I + + + ++ + + F+ ++
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 89 -----DVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIK-TNVIGTLNM 131
D++EP L EVD I H A A+ F + P ++ TNV+GT +
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--ATVNFVE--PYSDLRATNVLGTREV 116
Query: 132 LGLAKRVGARILL-TSTSEVYGDPLVHPQDE----------SYWGNVNPIGVRSCYDEGK 180
L LAK++ ST+ V G+ +++ G N Y + K
Sbjct: 117 LRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNG------YTQSK 170
Query: 181 RVAETLMFDYHRQHGIEIRIAR 202
+AE L+ + G+ + I R
Sbjct: 171 WLAEQLVREAAG--GLPVVIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 62/206 (30%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF-TGSKDNL-RKWIG 79
F+Q R+LVTG GF GS L L E + N F + DN G
Sbjct: 1 FWQ-GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRG 59
Query: 80 HPR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA 135
R +R + E E + ++HLA A P+ YK +PV+T +TNV+GT+N+L
Sbjct: 60 DIRDLNALREAIRE---YEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAI 113
Query: 136 KRVG-ARILLTSTSE-VYGDPLVHPQDESYWGNV--NPIGVRSCYDEGKRVAETLMFDYH 191
+ G + ++ TS+ Y + E WG +P+G Y K AE ++ Y
Sbjct: 114 RETGSVKAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYR 167
Query: 192 R---------QHGIEIRIARIFNTYG 208
+HGI I AR N G
Sbjct: 168 NSFFNPENYGKHGIAIASARAGNVIG 193
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-11
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 34/196 (17%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSKDNLRKWIGHPRFELIRHDV 90
ILVTGGAG+IGSH V +L+ +V+V+DN + +++ G L+ H V
Sbjct: 7 TILVTGGAGYIGSHTVLQLLL-AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV 65
Query: 91 T-------EPLLIE--VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
E + D + H A A P+ Y N N++GT+N+L +
Sbjct: 66 DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINLLEV 118
Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR- 192
+ G + L+ S+S VYG P P E + P+ + Y K E + D H
Sbjct: 119 MAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICRDIHAS 173
Query: 193 QHGIEIRIARIFNTYG 208
+I + R FN G
Sbjct: 174 DPEWKIILLRYFNPVG 189
|
Length = 352 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 38/198 (19%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR 87
MR+LVTGG+G+IGSH +L++N ++V+++DN SK ++ I P F +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN-LCNSKRSVLPVIERLGGKHPTF--VE 56
Query: 88 HDV-TEPLLIE------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLG 133
D+ E LL E +D + H A P+ Y N NV GTL ++
Sbjct: 57 GDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLIS 109
Query: 134 LAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYH 191
+ + ++ +S++ VYGD P ES+ P G +S Y + K + E ++ D
Sbjct: 110 AMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQ 164
Query: 192 R-QHGIEIRIARIFNTYG 208
+ Q I + R FN G
Sbjct: 165 KAQPDWSIALLRYFNPVG 182
|
Length = 338 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 20/122 (16%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDV 90
+ VTGG GF+G HLV +L+EN +++V + + + R ++ D+
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRS--ESLGEAHERIEEAGLEADRVRVLEGDL 58
Query: 91 TEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
T+P L +VD + H A AS ++ +TN+ GT ++L LA R+
Sbjct: 59 TQPNLGLSAAASRELAGKVDHVIHCA--ASY-DFQAPNEDAWRTNIDGTEHVLELAARLD 115
Query: 140 AR 141
+
Sbjct: 116 IQ 117
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 18/198 (9%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD---NYFTGSKDNLRKWIGHPRFELI 86
+RI +TG GFI SH+ +L E + +I D N ++ +L
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASDWKKNEHMSEDMFCHEFH---LVDLR 74
Query: 87 RHDVTEPLLIEVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
+ + VD +++LA + F + N + N + + NML A+ G R
Sbjct: 75 VMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY 134
Query: 145 TSTSEVYG-----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
S++ +Y + V ++ W P + Y K E L Y + GIE R
Sbjct: 135 ASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECR 190
Query: 200 IARIFNTYGPRMNIDDGR 217
I R N YGP GR
Sbjct: 191 IGRFHNIYGPFGTWKGGR 208
|
Length = 370 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 52/186 (27%), Positives = 70/186 (37%), Gaps = 28/186 (15%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
++LVTG GFIG LVDKL+ + I V N EL D
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-------AENAEPSVVLAELPDIDSFTD 53
Query: 94 LLIEVDQIYHLAC------PASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILL 144
L + VD + HLA Y V N T + A R G + + L
Sbjct: 54 LFLGVDAVVHLAARVHVMNDQGADPLSDYRKV-----NTELTRRLARAAARQGVKRFVFL 108
Query: 145 TSTSEVYGDPLVH-PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
S+ +V G+ V P DE+ P + Y K AE + + G+E+ I R
Sbjct: 109 -SSVKVNGEGTVGAPFDET--DPPAP---QDAYGRSKLEAERALLELGASDGMEVVILRP 162
Query: 204 FNTYGP 209
YGP
Sbjct: 163 PMVYGP 168
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-10
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 27/129 (20%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWI---GHPRFELI 86
MR VTGG GFIG LV +L++ + + + S L G R +
Sbjct: 1 MRYFVTGGTGFIGRRLVSRLLDRRREATV----HVLVRRQSLSRLEALAAYWGADRVVPL 56
Query: 87 RHDVTEPLL----------IEVDQIYHLACPASPIFYKYNP--VKTIKTNVIGTLNMLGL 134
D+TEP L ++D + HLA Y NV GT N++ L
Sbjct: 57 VGDLTEPGLGLSEADIAELGDIDHVVHLAA-----IYDLTADEEAQRAANVDGTRNVVEL 111
Query: 135 AKRVGARIL 143
A+R+ A
Sbjct: 112 AERLQAATF 120
|
Length = 657 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-10
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 39/210 (18%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
LV GG+GF+G HLV++L+ V V D T D R + D+T+P
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSS----SGRVQFHTGDLTDP 56
Query: 94 LLIE-------VDQIYHLACPAS----PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
+E + ++H A P ++Y K NV GT N++ ++ G +
Sbjct: 57 QDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--------KVNVQGTRNVIEACRKCGVKK 108
Query: 143 LL--TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG----I 196
L+ +S S V+ + DES P + Y+E K +AE L+ +
Sbjct: 109 LVYTSSASVVFNGQDIINGDESL---PYPDKHQDAYNETKALAEKLVLKANDPESGLLTC 165
Query: 197 EIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226
+R A IF GP D ++V + A
Sbjct: 166 ALRPAGIF---GPG----DRQLVPGLLKAA 188
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 25/203 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVTE 92
+ILVTG G +GS +V L V+ F SK+ +L +
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV-----FRTSKELDLTDQ-----------EAVR 44
Query: 93 PLLIEV--DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGARILLT-STS 148
+ D + HLA I P ++ N++ N++ A R G + L+ +S
Sbjct: 45 AFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF-NTY 207
+Y D P DES P Y KR L Y +Q+G + I+ + N Y
Sbjct: 105 CIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY-ISVMPTNLY 163
Query: 208 GPRMNID--DGRVVSNFIAQAIR 228
GP N D + V+ I +
Sbjct: 164 GPHDNFDPENSHVIPALIRKFHE 186
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-09
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 36 LVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDV 90
LVTGG GF+G H++ L+E ++ E+ V+D F + + K G I D+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF--GPELIEHFEKSQGKTYVTDIEGDI 60
Query: 91 T--EPLLIE---VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
L V + H A +F N + + NV GT +L + + L+
Sbjct: 61 KDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVY 119
Query: 145 TSTSEV-----YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM 187
TS+ EV G P+ + +++ + + + Y K +AE ++
Sbjct: 120 TSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIV 163
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 31/184 (16%)
Query: 37 VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTE 92
VTG +GFIGS LV +L++ V + G + + + R +L + D+ +
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 93 PLLIE-----VDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
+ D ++H+A P F + + I+ V GTLN+L + + R++
Sbjct: 61 YGSFDAAIDGCDGVFHVASP--VDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVF 118
Query: 145 T-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSC------YDEGKRVAETLMFDYHRQH 194
T S + V +P DES W +++ C Y K +AE +++ ++
Sbjct: 119 TSSVAAVVWNPNRGEGKVVDESCWSDLD-----FCKKTKLWYALSKTLAEKAAWEFAEEN 173
Query: 195 GIEI 198
G+++
Sbjct: 174 GLDL 177
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 3e-09
Identities = 60/202 (29%), Positives = 88/202 (43%), Gaps = 24/202 (11%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RK 76
+K + R L+TG AGFIGS L+++L+ + VI +DN+ TG + NL +
Sbjct: 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQ 67
Query: 77 WIGHPRFELIRHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
W RF I+ D+ + VD + H A S +P+ T N+ G LNM
Sbjct: 68 W---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNM 124
Query: 132 LGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
L A+ + ++S YGD P+ E G P+ S Y K V E +
Sbjct: 125 LTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIG--RPL---SPYAVTKYVNELYADVF 179
Query: 191 HRQHGIEIRIARIFNTYGPRMN 212
R + R FN +G R N
Sbjct: 180 ARSYEFNAIGLRYFNVFGRRQN 201
|
Length = 348 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEP 93
ILVTG AG +G L +L + VI VD + R+ G P+ E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRLAAS--PRVIGVD------GLDRRRPPGSPPKVEYVRLDIRDP 52
Query: 94 LLI------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
E D + HLA P + + + NV GT N+L G R+++TS
Sbjct: 53 AAADVFREREADAVVHLAFILDPP---RDGAERHRINVDGTQNVLDACAAAGVPRVVVTS 109
Query: 147 TSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIA 201
+ VYG +P +D G+ Y K E L+ ++ R+H + + +
Sbjct: 110 SVAVYGAHPDNPAPLTEDAPLRGS-----PEFAYSRDKAEVEQLLAEFRRRHPELNVTVL 164
Query: 202 RIFNTYGP 209
R GP
Sbjct: 165 RPATILGP 172
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-09
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 45/178 (25%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M+IL+TG GFIG +L+ +L E + +++ D EL +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDDDIFFYD-------------RESDESEL------D 41
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150
L D I+HLA P + + NV T +L R G + ILL+S+ +
Sbjct: 42 DFLQGADFIFHLAGVNRP----KDEAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQA 97
Query: 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
D NP Y + K AE L+ +Y R+ G + I R+ N +G
Sbjct: 98 ALD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFG 135
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-09
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 23/153 (15%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHD 89
+LVTG GFI SH+V++L++ V + L+ + R E + D
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRS--LSKSAKLKALLKAAGYNDRLEFVIVD 58
Query: 90 VT------EPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRVGA- 140
+ L VD + H+ ASP + + I V GTLN+L AK G+
Sbjct: 59 DLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSV 115
Query: 141 -RILLTSTSEVYGDPLVHPQ----DESYWGNVN 168
R++LTS+ GDP E W ++
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 35/183 (19%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M+IL+TG G +G+ L L EVI D ++ D
Sbjct: 1 MKILITGANGQLGTELRRALPGEF--EVIATD---------------RAELDITDPDAVL 43
Query: 93 PLLIEV--DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
++ E D + + A A K P N G N+ A VGAR++ ST
Sbjct: 44 EVIRETRPDVVINAA--AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101
Query: 149 EVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
V+ D NP+ V Y K E + +H I +R + ++
Sbjct: 102 YVFDGEKGGPYKETDT-----PNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYG 152
Query: 206 TYG 208
YG
Sbjct: 153 EYG 155
|
Length = 281 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-08
Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 40/207 (19%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV------------------DNYFTGSKDNLR 75
+L+TG GF+G++L+ +L++ + I Y
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGL--NLWDE 58
Query: 76 KWIGHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTN 124
+ R +++ D+++P L EVD I H A+ + + Y + N
Sbjct: 59 LEL--SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPAN 113
Query: 125 VIGTLNMLGLA-KRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGVRSCYDEGKR 181
V+GT +L LA + ST V+ + D+ + + G+ + Y + K
Sbjct: 114 VLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKW 173
Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYG 208
VAE L+ + + G+ + I R N +G
Sbjct: 174 VAEKLLREAANR-GLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-08
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 47/195 (24%)
Query: 35 ILVTGGAGFIGSHLVDKLME-------------NEKNEVIVVDNYFTGSKDNLRKWIGHP 81
+LVTG +GF+ SH+V++L+E K ++D L G
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD---------LDAKPGR- 50
Query: 82 RFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
EL D+T+ + ++H+A P S F +P + IK + GTLN L A
Sbjct: 51 -LELAVADLTDEQSFDEVIKGCAGVFHVATPVS--FSSKDPNEVIKPAIGGTLNALKAAA 107
Query: 137 RVGA--RILLTSTSEVYGDPLVHPQ----DESYWGNVN-------PIGVRSCYDEGKRVA 183
+ R +LTS++ P + + DE W V Y K +A
Sbjct: 108 AAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWV---YAASKTLA 164
Query: 184 ETLMFDYHRQHGIEI 198
E + + ++ I++
Sbjct: 165 EKAAWKFADENNIDL 179
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 46/201 (22%), Positives = 72/201 (35%), Gaps = 42/201 (20%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TG G +G LV +L E V+ + + +L + E
Sbjct: 1 RILITGANGQLGRELVQQLS-PEGRVVVALT---------------RSQLDLTDPEALER 44
Query: 94 LL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151
LL I D + + A + +P K N + N+ A R GAR++ ST V+
Sbjct: 45 LLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVF 104
Query: 152 ----GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
P D NP+ V Y + K E + I +R + ++
Sbjct: 105 DGEGKRPY-REDDA-----TNPLNV---YGQSKLAGEQAVRAAGPNALI-VRTSWLYGGG 154
Query: 208 GPRMNIDDGRVVSNFIAQAIR 228
G R NF+ +R
Sbjct: 155 GGR----------NFVRTMLR 165
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 34 RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFE--LIRHDV 90
RIL+TGG G IGS L L + K+ VI D +RK H DV
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASD---------IRKPPAHVVLSGPFEYLDV 51
Query: 91 TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
+ +E + I HLA S + K NP N+ G N+L LA+ RI
Sbjct: 52 LDFKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIF 110
Query: 144 LTSTSEVYGD--PLVH-PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
+ ST +G P + P D P R+ Y K AE L YH + G++ R
Sbjct: 111 VPSTIGAFGPTTPRNNTPDDTI----QRP---RTIYGVSKVAAELLGEYYHHKFGVDFRS 163
Query: 201 AR 202
R
Sbjct: 164 LR 165
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRF 83
+N IL+TGG G G + +L+EN + I++ Y S+D L++W P
Sbjct: 1 MFNNKSILITGGTGSFGKAFISRLLENYNPKKIII--Y---SRDELKQWEMQQKFPAPCL 55
Query: 84 ELIRHDVT-----EPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNML 132
DV L VD + H A PA+ +YNP + I+TN+ G N++
Sbjct: 56 RFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA----EYNPFECIRTNINGAQNVI 109
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 37/204 (18%)
Query: 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFT--GSKDNLRKWIGH 80
F ++LVTG GF GS L L+E + N F + G
Sbjct: 1 FWQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGD 60
Query: 81 PR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK 136
R +R + E + + ++HLA A P+ Y P++T +TNV+GT+N+L +
Sbjct: 61 IRDAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYAD-PLETFETNVMGTVNLLEAIR 114
Query: 137 RVG---ARILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAETLMFDYH 191
+G A + +T + + Y + DE WG +P+G Y K AE ++ Y
Sbjct: 115 AIGSVKAVVNVT-SDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASYR 167
Query: 192 R-------QHGIEIRIARIFNTYG 208
HGI+I AR N G
Sbjct: 168 SSFFGVANFHGIKIASARAGNVIG 191
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
M++LVTG GF+GS +V L+E E+ V+V + R G E++ D+
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT------SDRRNLEGLD-VEIVEGDLR 53
Query: 92 EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
+P + ++H+A A + +P + NV GT N+L A G R++ T
Sbjct: 54 DPASLRKAVAGCRALFHVA--ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111
Query: 146 ST 147
S+
Sbjct: 112 SS 113
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 28/144 (19%)
Query: 73 NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
NLR+ I D +P +IY+LA + P T + IGTL +L
Sbjct: 69 NLRRII----------DEIKP-----TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLL 113
Query: 133 ------GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186
GL K V + STSE+YG PQ+E+ P RS Y K A +
Sbjct: 114 EAVRTLGLIKSV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWI 166
Query: 187 MFDYHRQHGIEIRIARIFNTYGPR 210
+Y +G+ +FN PR
Sbjct: 167 TVNYREAYGLFAVNGILFNHESPR 190
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
I+VTGGAGFIGS++V L + +++VVDN G+K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
|
Length = 308 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 40/183 (21%), Positives = 65/183 (35%), Gaps = 30/183 (16%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
V G +G IG + + + +V +V + K P E++ D +
Sbjct: 2 AHVLGASGPIGREVA-RELRRRGWDVRLVSR-------SGSKLAWLPGVEIVAADAMDAS 53
Query: 95 LIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
+ D IYH A PA + + P + NV+ A+ GA+++L
Sbjct: 54 SVIAAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVY 105
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGK-RVA-ETLMFDYHRQHGIEIRIARIFNTY 207
+YG P E P +G+ R E + H + I I R + Y
Sbjct: 106 MYGPQAGSPITEDT--PFQPTT-----RKGRIRAEMEERLLAAHAKGDIRALIVRAPDFY 158
Query: 208 GPR 210
GP
Sbjct: 159 GPG 161
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-06
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
+L+TGG G G+ ++ + ++ + E+ + +D++RK + + + DV +
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRD-EKKQDDMRKKYNNSKLKFYIGDVRDYR 65
Query: 95 LI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML--GLAKRVGARILLTST 147
I VD IYH A +++P++ +KTNV+GT N+L +A V + L++
Sbjct: 66 SILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTD 125
Query: 148 SEVY 151
VY
Sbjct: 126 KAVY 129
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 43/219 (19%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN----------EKNE----------VIVVDNYFTGSKD 72
+L+TG GF+G++L+ +L++ +++ + ++ S D
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60
Query: 73 NLRKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
+ G P L E L VD I H A+ + + + + NV+GT
Sbjct: 61 RVEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTA 116
Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVH-------PQDESYWGNVNPIGVRSCYDEGKR 181
+L LA + L S+ V + G Y K
Sbjct: 117 EVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAG---GYGRSKW 173
Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYGP----RMNIDDG 216
VAE L+ + + G+ + I R G +N D
Sbjct: 174 VAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDF 211
|
Length = 382 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 50/188 (26%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
+IL+TG G +G LV L E EVI G R L + D+T+P
Sbjct: 1 KILITGATGMLGRALVRLLKERGY-EVIG---------------TGRSRASLFKLDLTDP 44
Query: 94 L-LIEV------DQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
+ E D I + A C + P + NV+ N+ AK VG
Sbjct: 45 DAVEEAIRDYKPDVIINCAAYTRVDKCESDPE-------LAYRVNVLAPENLARAAKEVG 97
Query: 140 ARILLTSTSEVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
AR++ ST V+ P +D NP+ V Y + K + E + + + ++ I
Sbjct: 98 ARLIHISTDYVFDGKKGPYK-EEDAP-----NPLNV---YGKSKLLGEVAVLNANPRYLI 148
Query: 197 EIRIARIF 204
+R + ++
Sbjct: 149 -LRTSWLY 155
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 34/152 (22%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVV----DNYFTGSKD--NLRKWIGHPRFEL 85
+L+TG GF+G L++KL+ + + I + + + + L K R
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 86 -----------IRHDVTEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKT 123
I D++EP L+ EV+ I H A A+ F + + +
Sbjct: 61 LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--ATVTFDERLD-EALSI 117
Query: 124 NVIGTLNMLGLAKRV--GARILLTSTSEVYGD 153
NV+GTL +L LAKR + ST+ V GD
Sbjct: 118 NVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEP 93
IL+ G GFIG L +L+ + +EV ++ ++ R ++ D+ +
Sbjct: 1 ILILGATGFIGRALARELL-EQGHEVTLLV------RNTKRLSKEDQEPVAVVEGDLRDL 53
Query: 94 LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
+ VD + HLA +P + + +V GT N+L AK G + S+
Sbjct: 54 DSLSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISS 107
Query: 148 SEVYGDP 154
YGD
Sbjct: 108 LGAYGDL 114
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 35/211 (16%)
Query: 35 ILVTGGAGFIGSHLVDKLMEN-----------EKNEVIVVDNYFTGSKDNLRKW---IGH 80
+L+TG GF+G++L+++L+ +E ++ + R W +
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSY-RLWHEDLAR 60
Query: 81 PRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
R E++ D++EP L VD I H + Y Y+ ++ NV+GT
Sbjct: 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVN-WVYPYSELR--GANVLGTR 117
Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188
+L LA A+ L ST V + E P G+ Y + K VAE L+
Sbjct: 118 EVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELLV- 176
Query: 189 DYHRQHGIEIRIAR----IFNTYGPRMNIDD 215
G+ + I R + N+Y +N D
Sbjct: 177 REASDRGLPVTIVRPGRILGNSYTGAINSSD 207
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-05
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 33/124 (26%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
+LVTGG+G IG + L +V+VV R +++ H+
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----------------RRDVVVHNAAILD 43
Query: 95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGARILLTSTSE 149
+ + + I+ NV+GT +L A+ + R +L S+
Sbjct: 44 DGRLIDL-----------TGSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 150 VYGD 153
Sbjct: 93 GLFG 96
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
M+ILVTG GF+G +V +L+ + +
Sbjct: 1 MKILVTGATGFVGGAVVRELL--ARGHEVRAAV 31
|
Length = 275 |
| >gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 1e-04
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEP 93
+ VTG G+I S +V L+E V N +LR+ G R L + D+ +
Sbjct: 13 VCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDY 72
Query: 94 LLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
++ D ++H A P + +P + ++ V G ++ A R+++TS+
Sbjct: 73 EALKAAIDGCDGVFHTASPVTD-----DPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127
Query: 148 -SEVYGDPLVHPQ---DESYWGNVNPI-GVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
VY DP P+ DES W +++ ++ Y GK VAE ++ ++ G+++ +
Sbjct: 128 IGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLN 187
Query: 203 IFNTYGP 209
GP
Sbjct: 188 PVLVLGP 194
|
Length = 342 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 43/199 (21%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 35 ILVTGGAGFIGSHLVDKLM--------------ENEKNEVIVVDNYFTGSKDNLRKWIGH 80
+ VTG +G+I S +V L+ + +K E ++ G+K+ L+ +
Sbjct: 8 VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA---LDGAKERLKLF--- 61
Query: 81 PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRV 138
+ +L+ E + D ++H ASP+F+ +T I + GT+N+L K
Sbjct: 62 -KADLLEESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117
Query: 139 GA--RILLTSTSE--VYGDPLVHPQ---DESYWGNVNPI-GVRSCYDEGKRVAETLMFDY 190
+ R++LTS++ ++ P + DE+++ + + ++ Y K +AE +++
Sbjct: 118 PSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEF 177
Query: 191 HRQHGIEIRIARIFNTYGP 209
+ +GI++ + GP
Sbjct: 178 AKDNGIDMVVLNPGFICGP 196
|
Length = 322 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
+LVTG G++G LV +L++ E ++V S + L R ++R D+ +P
Sbjct: 1 VLVTGATGYVGGRLVPRLLQ-EGHQVRA----LVRSPEKLADRPWSERVTVVRGDLEDPE 55
Query: 94 ----LLIEVDQIYHL 104
L +D Y+L
Sbjct: 56 SLRAALEGIDTAYYL 70
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 43/158 (27%)
Query: 33 MRILVTGGAGFIG----SHLVDKLMENEKNEVIVVDNYFTGSKDN--------------- 73
M++L+ GG G+ G HL + +EV +VDN D
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKR-----GHEVCIVDNLVRRRIDVELGLESLTPIASIHE 55
Query: 74 -LRKW---IGHPRFELIRHDVTEPLL-------IEVDQIYHLA----CPASPIFYKYNPV 118
LR W G E D + E D + H A P S I + +
Sbjct: 56 RLRAWKELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMI-DREHAN 113
Query: 119 KTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDP 154
T NVIGTLN+L K ++ T YG P
Sbjct: 114 YTQHNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTP 151
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 42/203 (20%), Positives = 64/203 (31%), Gaps = 56/203 (27%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN-----------------EKNEVIVVDNYFTGSKDNLR 75
M+IL+ GG FIG LV++L+ E E IV D +D L
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHDVTVFNRGRTKPDLPEGVEHIVGDRN---DRDALE 57
Query: 76 KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA 135
+ +G F+++ VD I Y P + L
Sbjct: 58 ELLGGEDFDVV-----------VDTI------------AYTPRQ--------VERALDAF 86
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQ 193
K + + S++ VY P + + + Y GKR AE ++ +
Sbjct: 87 KGRVKQYIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEA--- 143
Query: 194 HGIEIRIARIFNTYGPRMNIDDG 216
I R YGP
Sbjct: 144 AAFPYTIVRPPYIYGPGDYTGRL 166
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN 55
M++ VTG GFIGS +V +L+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAA 23
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 42/185 (22%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTG G +G L L E+ +V + P +L + L
Sbjct: 1 ILVTGANGQLGRELTRLL--AERGVEVVA--------------LDRPELDLTDPEAVAAL 44
Query: 95 LIEV--DQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
+ E D + + A Y + P N +G N+ GA ++ S
Sbjct: 45 VREARPDVVVNAA------AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHIS 98
Query: 147 TSEVY-GDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
T V+ G D P+ V Y K E + + +H I +R A +
Sbjct: 99 TDYVFDGAKGGPYREDDP-----TGPLNV---YGRTKLAGEQAVLAANPRHLI-LRTAWV 149
Query: 204 FNTYG 208
+ YG
Sbjct: 150 YGEYG 154
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.98 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.98 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.97 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.96 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.96 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.96 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.96 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.96 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.96 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.96 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.96 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.96 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.96 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.95 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.95 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.95 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.95 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.95 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.95 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.95 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.95 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.95 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.95 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.95 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.94 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.94 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.94 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.94 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.94 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.94 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.94 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.94 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.94 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.93 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.93 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.93 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.93 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.92 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.92 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.92 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.92 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.91 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.91 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.89 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.89 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.88 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.88 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.88 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.86 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.85 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.84 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.84 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.84 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.84 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.83 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.83 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.83 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.83 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.83 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.82 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.82 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.82 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.82 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.82 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.82 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.82 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.81 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.81 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.81 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.81 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.81 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.8 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.8 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.8 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.8 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.79 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.79 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.79 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.79 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.79 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.78 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.78 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.78 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.78 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.78 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.78 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.77 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.77 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.77 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.77 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.77 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.77 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.77 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.77 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.77 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.77 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.77 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.76 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.76 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.76 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.76 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.76 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.76 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.76 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.76 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.75 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.75 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.75 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.75 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.74 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.74 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.74 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.74 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.73 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.73 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.73 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.73 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.72 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.72 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.72 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.72 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.72 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.71 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.71 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.71 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.71 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.71 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.7 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.7 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.7 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.7 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.7 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.69 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.69 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.69 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.68 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.68 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.68 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.68 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.67 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.66 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.66 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.65 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.65 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.64 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.64 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.64 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.64 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.64 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.63 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.63 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.63 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.63 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.61 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.61 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.6 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.6 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.6 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.59 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.59 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.59 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.56 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.55 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.54 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.52 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.52 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.52 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.51 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.51 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.5 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.49 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.49 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.49 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.47 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.41 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.41 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.39 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.36 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.34 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.33 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.33 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.32 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.3 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.28 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.26 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.24 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.09 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.04 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.98 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.97 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.9 | |
| PLN00106 | 323 | malate dehydrogenase | 98.88 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.85 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.79 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.69 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.67 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.65 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.58 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.51 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.51 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.32 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.31 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 98.25 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.22 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 98.15 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.15 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.13 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.13 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.13 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 98.12 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 98.11 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.09 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.08 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.07 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.98 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.98 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.96 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.94 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.93 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.88 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.87 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.87 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.84 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.83 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.83 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.83 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.83 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.82 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.8 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 97.78 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.78 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.76 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.73 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.72 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.7 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.68 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 97.66 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.64 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.61 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.61 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.59 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.58 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 97.58 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.57 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.55 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.55 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.55 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.53 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.51 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.5 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.49 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.48 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.47 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.46 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.45 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.43 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.43 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.43 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.41 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.37 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 97.36 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.36 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.35 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.35 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.35 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.34 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.32 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.32 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.29 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.29 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.27 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.27 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.26 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.26 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.25 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.23 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 97.23 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.19 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.18 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.18 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.17 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.16 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.14 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.13 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.12 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.1 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 97.09 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.07 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.07 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.06 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.06 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.05 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.05 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.03 | |
| PRK07411 | 390 | hypothetical protein; Validated | 97.02 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.01 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.99 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.96 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.95 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.94 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.93 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.91 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.9 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.89 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.88 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.85 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.84 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.83 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.78 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.78 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.76 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 96.74 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.73 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 96.7 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.66 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.65 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.64 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.62 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.6 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.59 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.58 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.55 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.54 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 96.53 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.49 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 96.49 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.41 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.41 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.41 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.41 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.39 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.36 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.36 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.34 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 96.31 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.28 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.27 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.25 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.24 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.21 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.2 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.2 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.19 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.18 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.17 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.16 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 96.14 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.14 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 96.13 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.13 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.1 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.04 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.04 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.02 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.01 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.99 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.97 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.96 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.93 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.92 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.9 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 95.88 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.87 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 95.87 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.87 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.82 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.81 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.78 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.75 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.75 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 95.73 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.72 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.7 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.69 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.69 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 95.66 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.63 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 95.63 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.63 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.6 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.59 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.58 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.58 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.58 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.55 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.53 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.52 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.49 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 95.42 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.42 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.36 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.35 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.31 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.28 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.26 |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=234.99 Aligned_cols=195 Identities=79% Similarity=1.319 Sum_probs=161.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
.|||+|||||||||++|+++|++.| ++|++++|......+..........++++..|+.+....++|+|||+|+...+.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~~ 198 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV 198 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccch
Confidence 5899999999999999999999999 999999985433222222222234688999999888888999999999876554
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHH
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 191 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~ 191 (228)
....++...++.|+.++.+++++|++.+++||++||..+||.....+.+|+.+...+|..+.+.|+.+|..+|++++.++
T Consensus 199 ~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~ 278 (436)
T PLN02166 199 HYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYH 278 (436)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 44456778899999999999999999888999999999999776667788765555677777889999999999999998
Q ss_pred HHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 192 ~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+.++++++++||+++|||++....+++++.++.+++
T Consensus 279 ~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l 314 (436)
T PLN02166 279 RGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTI 314 (436)
T ss_pred HHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHh
Confidence 888999999999999999876544568888887765
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=231.29 Aligned_cols=196 Identities=77% Similarity=1.281 Sum_probs=161.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 110 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~ 110 (228)
.+|+|||||||||||++|+++|+++| ++|++++|......+.........+++++.+|+.+....++|+|||+|+...+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~ 196 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASP 196 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecch
Confidence 36899999999999999999999999 99999987433322222222234568899999999888899999999987655
Q ss_pred ccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHH
Q 027129 111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190 (228)
Q Consensus 111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~ 190 (228)
.....++.+.++.|+.++.+++++|++.++|||++||..+|+.....+.+|+.+...+|..+.+.|+.+|.++|++++.+
T Consensus 197 ~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y 276 (442)
T PLN02206 197 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDY 276 (442)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHH
Confidence 44445677889999999999999999998899999999999977666777775554456666788999999999999999
Q ss_pred HHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 191 HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 191 ~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
++.++++++++||+++|||++....+.+++.++.+++
T Consensus 277 ~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l 313 (442)
T PLN02206 277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL 313 (442)
T ss_pred HHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHH
Confidence 8888999999999999999865444567888887764
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=225.89 Aligned_cols=192 Identities=30% Similarity=0.342 Sum_probs=155.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc------CCCceEEEeccCCCcc-----cCCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPL-----LIEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~-----~~~~ 98 (228)
.++|+|+|||||||||++|+++|+++| ++|++++|............. ...++.++.+|+.+.. +.++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 347999999999999999999999999 999999985443322221111 1135788999998753 3579
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHH
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
|+|||+|+.........++...++.|+.++.+++++|++.++ +|||+||.++||.....+..|+ .+..|.+.|+
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~ 166 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPYA 166 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChhh
Confidence 999999997665555566778899999999999999999998 8999999999997655566665 4566778899
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHHh
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAI 227 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~~ 227 (228)
.+|.++|++++.+.++++++++++||+++|||++++. .+.+++.++.+++
T Consensus 167 ~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~ 218 (348)
T PRK15181 167 VTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLL 218 (348)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHH
Confidence 9999999999999888899999999999999987653 2357888887664
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=208.82 Aligned_cols=206 Identities=81% Similarity=1.278 Sum_probs=190.8
Q ss_pred CcchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEE
Q 027129 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 22 ~~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~v 101 (228)
.+.+.....++++|+||||.||||++|+++|+.+| |.|++++....+....+..+.....++++.-|++.+.+.+.|.|
T Consensus 17 ~~~~~~~p~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~I 95 (350)
T KOG1429|consen 17 RLREQVKPSQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQI 95 (350)
T ss_pred hhhhcccCCCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhh
Confidence 33444445557999999999999999999999999 99999999877777777777778899999999999999999999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
+|+|+..++.....++...+..|..++.+++-.|++.++||++.||+.|||++..+|..|+.|....|..+.+.|..-|.
T Consensus 96 yhLAapasp~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr 175 (350)
T KOG1429|consen 96 YHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKR 175 (350)
T ss_pred hhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHhC
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~~ 228 (228)
.+|.++..|.++.|+.+.|.|+.+.|||......++.++.|+.++++
T Consensus 176 ~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr 222 (350)
T KOG1429|consen 176 VAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALR 222 (350)
T ss_pred HHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhc
Confidence 99999999999999999999999999999998889999999998874
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=207.97 Aligned_cols=185 Identities=32% Similarity=0.528 Sum_probs=162.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~~a 105 (228)
|+||||||.||||++.+.+|++.| ++|++++....+..+.+... .+.++++|+.|.... ++|.|||+|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence 789999999999999999999999 99999999766655554321 278999999996542 799999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
|......+-+++.++++.|+.++.+|+++|+++++ +|||-||+.+||++...|++|+ .|..|.++||.||.+.|
T Consensus 76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sKlm~E 150 (329)
T COG1087 76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSKLMSE 150 (329)
T ss_pred cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHHHHHH
Confidence 98877777788999999999999999999999999 8999999999999999999999 78888899999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCCCC-------CccHHHHHHHHHh
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNID-------DGRVVSNFIAQAI 227 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-------~~~~~~~~i~~~~ 227 (228)
++++.+...++++++++|-.++-|...+.. ...+||.+++.++
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~ 200 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAAL 200 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHh
Confidence 999999999999999999999999764421 2468888887664
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=206.06 Aligned_cols=188 Identities=31% Similarity=0.487 Sum_probs=165.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCcccC-------CccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~ 103 (228)
|++|||||.||||++++++++++.. .+|+.++..... +.+.+..+...+++.++++|++|.... ++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 6899999999999999999999863 568888885443 445566666678999999999986432 6999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCC--CCCCCCCCCCCCCCCCChHHHh
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEG 179 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~--~~~e~~~~~~~~~~~~~~y~~s 179 (228)
+|+-.+.+.+..++..+++.|+.++.+|++++++... ||+++||..|||+-... .++|. +|.+|.|+|+.|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9999888888899999999999999999999999884 99999999999976543 56777 899999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
|+..+.+++++.+.+|++++|.|+++-|||.+.+ -++||.+|.+++
T Consensus 156 KAasD~lVray~~TYglp~~ItrcSNNYGPyqfp--EKlIP~~I~nal 201 (340)
T COG1088 156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQFP--EKLIPLMIINAL 201 (340)
T ss_pred hhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCc--hhhhHHHHHHHH
Confidence 9999999999999999999999999999999988 569999998875
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=209.68 Aligned_cols=191 Identities=27% Similarity=0.442 Sum_probs=148.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-Cc-----ccCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EP-----LLIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~~D~vi~~ 104 (228)
||+|+|||||||||++|+++|++. + ++|++++|... ..........++++.+|+. +. ...++|+|||+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~----~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTD----RLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHH----HHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 689999999999999999999986 6 89999998422 2222223346889999997 43 22479999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCC-CCCC-CCCCChHHHhHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNP-IGVRSCYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~-~~~~-~~~~~~y~~sK~~ 182 (228)
|+...+.....+++..+++|+.++.+++++|++.+.|||++||..+||.....++.|+... ...+ ..|.+.|+.+|.+
T Consensus 76 aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~ 155 (347)
T PRK11908 76 VAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQL 155 (347)
T ss_pred cccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHH
Confidence 9876655555677888899999999999999998779999999999986555556555311 0011 2355689999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCCC------CccHHHHHHHHHh
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAI 227 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~------~~~~~~~~i~~~~ 227 (228)
+|+.++.++.+++++++++||+++|||++... ..++++.++.+++
T Consensus 156 ~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~ 206 (347)
T PRK11908 156 MDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV 206 (347)
T ss_pred HHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHh
Confidence 99999999888899999999999999986431 2457888877654
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=203.36 Aligned_cols=164 Identities=22% Similarity=0.163 Sum_probs=134.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~~a 105 (228)
|+||||||+||||++++++|++.| +|++++|.. ..+.+|++|... .++|+|||||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~----------------~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A 62 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHS----------------TDYCGDFSNPEGVAETVRKIRPDVIVNAA 62 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEecccc----------------ccccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 689999999999999999999998 488888731 123467776532 2589999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
+.........+++..+++|+.++.+++++|++.++++|++||..+|++....+++|+ ++..|.+.|+.+|..+|+
T Consensus 63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK~~~E~ 137 (299)
T PRK09987 63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETKLAGEK 137 (299)
T ss_pred ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHHHHHHH
Confidence 987665555667778899999999999999999989999999999988766678887 677888899999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+++.++ .+.+++|++++|||++.. +++.+++.+.
T Consensus 138 ~~~~~~----~~~~ilR~~~vyGp~~~~----~~~~~~~~~~ 171 (299)
T PRK09987 138 ALQEHC----AKHLIFRTSWVYAGKGNN----FAKTMLRLAK 171 (299)
T ss_pred HHHHhC----CCEEEEecceecCCCCCC----HHHHHHHHHh
Confidence 987764 357999999999997542 6677776543
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=204.45 Aligned_cols=190 Identities=25% Similarity=0.309 Sum_probs=149.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
++|+|+||||+||||+++++.|+++| ++|++++|.................+.++.+|+++... .++|+|||
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 47999999999999999999999999 99999998654332221111112357778899987642 25899999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCChHHHhH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
+|+.........++...+++|+.++.++++++++.+ . +||++||..+|+.... .+.+|+ .+..|.+.|+.+|
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~sK 156 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSSK 156 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhHH
Confidence 999655444456677889999999999999998876 5 8999999999986432 345565 4666778899999
Q ss_pred HHHHHHHHHHHHHh-------CCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 181 RVAETLMFDYHRQH-------GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 181 ~~~e~~~~~~~~~~-------~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
..+|.+++.++.++ +++++++||+.+|||++.. .+++++.++++++
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~-~~~~~~~~~~~~~ 209 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA-EDRLIPDVIRAFS 209 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch-hhhhhHHHHHHHh
Confidence 99999999987764 8999999999999998643 2568888888765
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=194.06 Aligned_cols=184 Identities=36% Similarity=0.550 Sum_probs=151.4
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccEEEEccCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACP 107 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~~a~~ 107 (228)
|||+|||||||++++++|+++| +.|+.+.|........... ..+.+..+|+.+.... ++|+|||+|+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF 75 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Ccccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeecc
Confidence 7999999999999999999999 9999888843332211111 1789999999976432 67999999986
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
.............++.|+.++.++++++++.++ |+|++||..+|+.....+++|+ .+..+.+.|+.+|...|++
T Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPYGASKRAAEEL 150 (236)
T ss_dssp SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccc
Confidence 542223356778889999999999999999998 9999999999999877788888 5668888899999999999
Q ss_pred HHHHHHHhCCcEEEeeeccccCCC-CCCCCccHHHHHHHHHhC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPR-MNIDDGRVVSNFIAQAIR 228 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~-~~~~~~~~~~~~i~~~~~ 228 (228)
++.+.++++++++++||+.+|||+ .......+++.++.++++
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~ 193 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALK 193 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhc
Confidence 999999889999999999999999 222236699999988753
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=217.48 Aligned_cols=193 Identities=28% Similarity=0.509 Sum_probs=151.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi 102 (228)
..+|+|||||||||||++|+++|++. | ++|++++|...... ......+++++.+|+++.. +.++|+||
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~~----~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~Vi 387 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAIS----RFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVL 387 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhhh----hhcCCCceEEEeccccCcHHHHHHHhcCCCEEE
Confidence 44799999999999999999999985 7 99999998543211 1222346889999998632 34899999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCC-CCCC-CCCChHHHhH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GVRSCYDEGK 180 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~-~~~~-~~~~~y~~sK 180 (228)
|+|+...+.....++...++.|+.++.+++++|++++.||||+||..+||.....+++|+.+.. ..+. .+.+.|+.+|
T Consensus 388 HlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK 467 (660)
T PRK08125 388 PLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSK 467 (660)
T ss_pred ECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHH
Confidence 9999776554556667788999999999999999988799999999999976555677764321 1122 3556899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC------CccHHHHHHHHHh
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAI 227 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~------~~~~~~~~i~~~~ 227 (228)
.++|++++.+++.++++++++||+++|||++... ..++++.++.+++
T Consensus 468 ~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~ 520 (660)
T PRK08125 468 QLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV 520 (660)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhc
Confidence 9999999999888899999999999999986431 2357888877654
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=204.85 Aligned_cols=179 Identities=30% Similarity=0.420 Sum_probs=134.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcc-----cCCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL-----LIEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~-----~~~~D~vi 102 (228)
.|+|||||||||||++|+++|+++ + ++|++++|...+.. .+.... ...+++++.+|+.+.. ..++|+||
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g-~~V~~l~r~~~~~~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETP-HKVLALDVYNDKIK-HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCC-CEEEEEecCchhhh-hhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 579999999999999999999998 6 89999988533211 111110 1136889999998863 23799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCC-----------CCC--
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----------VNP-- 169 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~-----------~~~-- 169 (228)
|+|+...+.....++...+..|+.++.+++++|++.+.|||++||..+||.....+..|+.+.. ..+
T Consensus 92 HlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~ 171 (386)
T PLN02427 92 NLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCI 171 (386)
T ss_pred EcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccccc
Confidence 9998765443344555667889999999999999887799999999999865433333321100 000
Q ss_pred ----CCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 170 ----IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 170 ----~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
..+.+.|+.+|.++|++++.+++.++++++++||++||||++.
T Consensus 172 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~ 218 (386)
T PLN02427 172 FGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 218 (386)
T ss_pred cCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCC
Confidence 1234679999999999999998888999999999999999864
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=205.70 Aligned_cols=181 Identities=26% Similarity=0.329 Sum_probs=135.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------hhhhh--cCCCceEEEeccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------NLRKW--IGHPRFELIRHDVTE 92 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------~~~~~--~~~~~~~~~~~d~~~ 92 (228)
++|+||||||+||||++|+++|+++| ++|++++|....... .+... ....+++++.+|+.+
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~d 124 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD 124 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCCC
Confidence 37899999999999999999999999 999998753221100 01000 011358899999998
Q ss_pred cccC-------CccEEEEccCCCCcccccCC---chhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCC
Q 027129 93 PLLI-------EVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 93 ~~~~-------~~D~vi~~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.... ++|+|||+|+.........+ .+..++.|+.++.++++++++.++ +||++||..+||... .+.+
T Consensus 125 ~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~~ 203 (442)
T PLN02572 125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDIE 203 (442)
T ss_pred HHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCCc
Confidence 6422 58999999976543333322 245568999999999999999885 799999999998643 2333
Q ss_pred CCCCC------C---CCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 161 ESYWG------N---VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 161 e~~~~------~---~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
|.... . ..+..|.+.|+.+|.++|.+++.+++.++++++++||+++|||++..
T Consensus 204 E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~ 265 (442)
T PLN02572 204 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDE 265 (442)
T ss_pred ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcc
Confidence 33110 0 02556778899999999999999999899999999999999998654
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=198.54 Aligned_cols=177 Identities=25% Similarity=0.411 Sum_probs=139.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch-hhhhhcC-CCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
.+|+|+||||+||||++++++|+++| ++|+++.|....... ....+.. ...+.++.+|+++.. +.++|+|||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 47899999999999999999999999 999999985433211 1111111 135788899998753 247999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc-eeccCCCC---CCCCCCCCCCCC-CCCCCChHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLV---HPQDESYWGNVN-PIGVRSCYD 177 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~-~~y~~~~~---~~~~e~~~~~~~-~~~~~~~y~ 177 (228)
+|+.. ..++...++.|+.++.+++++|++.++ |||++||. .+|+.... .+++|+.|...+ +..+.+.|+
T Consensus 88 ~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 88 TASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred ecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHH
Confidence 99853 235677889999999999999999987 89999996 58875332 246777553322 345667899
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+|..+|++++.++++++++++++||+.||||++..
T Consensus 163 ~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~ 198 (342)
T PLN02214 163 YGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQP 198 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 999999999999988889999999999999998764
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=200.15 Aligned_cols=188 Identities=30% Similarity=0.415 Sum_probs=143.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEE-EcCCCCCCc-hhhhhhcCCCceEEEeccCCCcccC-------CccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi 102 (228)
||+|+|||||||||++++++|+++| +++++ ++|...... ...........+.++.+|+.+.... ++|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINET-SDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcC-CCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 5799999999999999999999999 76554 444221111 1111111223578889999886321 489999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc---------CC-eEEEEccceeccCCC--CCCCCCCCCCCCCCC
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPL--VHPQDESYWGNVNPI 170 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-r~i~~Ss~~~y~~~~--~~~~~e~~~~~~~~~ 170 (228)
|+||.........++...++.|+.++.++++++.+. ++ +||++||..+|+... ..+++|+ .+.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~ 154 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPY 154 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCC
Confidence 999876544344556788999999999999999863 34 899999999998542 3456776 566
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.|.+.|+.||.++|.+++.++++++++++++||+.+|||++.+ ..+++.++.+++
T Consensus 155 ~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~~~~~~~~~~ 209 (355)
T PRK10217 155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP--EKLIPLMILNAL 209 (355)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc--ccHHHHHHHHHh
Confidence 6778999999999999999988889999999999999999754 347888877654
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=195.23 Aligned_cols=172 Identities=34% Similarity=0.432 Sum_probs=130.9
Q ss_pred EEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCCCC
Q 027129 36 LVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS 109 (228)
Q Consensus 36 lItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~~~ 109 (228)
|||||+||||++|+++|+++|. ++|.++++....... .........+++++|+++.. +.++|+|||+|+...
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 6999999999999999999994 688888885443321 11122233448999999863 458999999998754
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC-CCCC---CCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQ---DESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~-~~~~---~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
... ....+..+++|+.++++++++|++.++ ||||+||..++++.. ..++ +|..+ .+..+...|+.||.++|
T Consensus 79 ~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~AE 154 (280)
T PF01073_consen 79 PWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALAE 154 (280)
T ss_pred ccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHHH
Confidence 322 345677899999999999999999998 899999999987622 2222 33311 23336678999999999
Q ss_pred HHHHHHHH---H--hCCcEEEeeeccccCCCCCC
Q 027129 185 TLMFDYHR---Q--HGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 185 ~~~~~~~~---~--~~i~~~ilRp~~i~G~~~~~ 213 (228)
+++++... + ..+.+++|||+.||||++..
T Consensus 155 ~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~ 188 (280)
T PF01073_consen 155 KAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR 188 (280)
T ss_pred HHHHhhcccccccccceeEEEEeccEEeCccccc
Confidence 99999765 1 25999999999999999765
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=198.28 Aligned_cols=184 Identities=24% Similarity=0.281 Sum_probs=135.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
.+++|+||||||+||||++++++|+++| ++|++++|...+.......+.....+.++.+|+++.. ..++|+|||
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 3557999999999999999999999999 9999998854322221112112246888999998763 247999999
Q ss_pred ccCCCCccc--ccCCchh-----hHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCC-----CCCCCCCCCCCC-
Q 027129 104 LACPASPIF--YKYNPVK-----TIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-----HPQDESYWGNVN- 168 (228)
Q Consensus 104 ~a~~~~~~~--~~~~~~~-----~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~-----~~~~e~~~~~~~- 168 (228)
+|+...... ...+++. .++.|+.++.+++++|++.+ + +||++||..+|+.... .+++|+.+.+.+
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~ 165 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDH 165 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHH
Confidence 998754332 2223333 34455699999999998875 5 8999999999985321 345565222111
Q ss_pred ---CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 169 ---PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 169 ---~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+..+.+.|+.||.++|++++.++++++++++++||+++|||++..
T Consensus 166 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~ 213 (353)
T PLN02896 166 VWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTP 213 (353)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCC
Confidence 223445799999999999999998889999999999999998764
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-27 Score=197.37 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=143.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
+.++|+|+|||||||||++++++|+++| ++|++++|........ .....+++.+|+++.. ..++|+|||
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih 91 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFN 91 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence 4457999999999999999999999999 9999999843211110 0112567788888753 347999999
Q ss_pred ccCCCCcccc-cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCC----CCCCCCCCCCCCCCCCChHH
Q 027129 104 LACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH----PQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 104 ~a~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~----~~~e~~~~~~~~~~~~~~y~ 177 (228)
+|+....... ..++...+..|+.++.+++++|++.++ +||++||..+|+..... ++.|+.. .+..|.+.|+
T Consensus 92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Yg 168 (370)
T PLN02695 92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAYG 168 (370)
T ss_pred cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHHH
Confidence 9986542221 234455678899999999999999987 89999999999865321 2444310 2566778999
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
.+|..+|++++.++.+++++++++||+++|||+..... ..+++.|+.+++
T Consensus 169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~ 220 (370)
T PLN02695 169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAL 220 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHH
Confidence 99999999999998888999999999999999765321 235667766553
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=192.49 Aligned_cols=193 Identities=20% Similarity=0.278 Sum_probs=141.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCccc-----CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL-----IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~-----~~~D~v 101 (228)
.+|+++||||+||||++++++|+++| ++|+++.|........ .... ...+++++.+|+++... .++|+|
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 47999999999999999999999999 9999988854432221 1111 11368889999998642 369999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceeccCCC-----CCCCCCCCCCCCC-CCCCC
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL-----VHPQDESYWGNVN-PIGVR 173 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y~~~~-----~~~~~e~~~~~~~-~~~~~ 173 (228)
||+||.........++...++.|+.++.++++++.+. +. +||++||..+|+... ..+++|+.+.... ...+.
T Consensus 82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~ 161 (325)
T PLN02989 82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK 161 (325)
T ss_pred EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence 9999865432233445677899999999999999885 44 899999988765432 2346676322110 01124
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+.|+.+|..+|++++.+.++++++++++||+++|||++.+.. .++..++.++
T Consensus 162 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~-~~~~~~i~~~ 213 (325)
T PLN02989 162 QWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTL-NFSVAVIVEL 213 (325)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCC-CchHHHHHHH
Confidence 679999999999999998888999999999999999977531 2444444443
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=194.48 Aligned_cols=188 Identities=27% Similarity=0.309 Sum_probs=145.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC------CCceEEEeccCCCccc-------CCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG------HPRFELIRHDVTEPLL-------IEV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~------~~~~~~~~~d~~~~~~-------~~~ 98 (228)
|+||||||+||||++++++|++.| ++|++++|..... .+....+.. ...+.++.+|++|... .++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 79 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP 79 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence 689999999999999999999999 9999999864321 111211110 2357899999998632 157
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
|+|||+|+.........++...+++|+.++.+++++|++.++ +||++||..+||.....+.+|+ .+..|.+
T Consensus 80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~ 154 (343)
T TIGR01472 80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRS 154 (343)
T ss_pred CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCC
Confidence 999999997654333345566778899999999999998763 7999999999997666667777 5677888
Q ss_pred hHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC-CccHHHHHHHHH
Q 027129 175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQA 226 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-~~~~~~~~i~~~ 226 (228)
.|+.||..+|.+++.+++++++++++.|+.++|||+.... ..+.+..++.++
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~ 207 (343)
T TIGR01472 155 PYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKI 207 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHH
Confidence 9999999999999999988899999999999999975431 123455555443
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=209.92 Aligned_cols=189 Identities=30% Similarity=0.430 Sum_probs=146.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCC-chhhhhhcCCCceEEEeccCCCccc-------CCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi 102 (228)
+|+|||||||||||++++++|++++ .++|++++|..... ...........+++++.+|+++... .++|+||
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vi 85 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTIM 85 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEEE
Confidence 6899999999999999999999983 28999998742111 1111111123468899999988532 3799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCC---CCCCCCCCCCCCCCCChHH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHP---QDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~---~~e~~~~~~~~~~~~~~y~ 177 (228)
|+|+.........++...++.|+.++.++++++++.+ + |||++||..+||.....+ ..|+ .+..|.+.|+
T Consensus 86 HlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~Y~ 160 (668)
T PLN02260 86 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNPYS 160 (668)
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCCcH
Confidence 9999765544445566788999999999999999987 5 899999999998764432 2343 4556778899
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+|..+|++++.+.++++++++++||++||||++.. ..+++.++..++
T Consensus 161 ~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~--~~~i~~~~~~a~ 208 (668)
T PLN02260 161 ATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP--EKLIPKFILLAM 208 (668)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc--ccHHHHHHHHHh
Confidence 999999999999988889999999999999998765 347777776654
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=193.73 Aligned_cols=187 Identities=30% Similarity=0.421 Sum_probs=141.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCe-EEEEcCCCC-CCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|+|+|||||||||++++++|+++| +. |+++++... ...+..........+.++.+|+++... .++|+|||
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT-QDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC-CCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 689999999999999999999998 54 555555321 111222222122457788999998632 25899999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc---------CC-eEEEEccceeccCCCC----------CCCCCCC
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPLV----------HPQDESY 163 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-r~i~~Ss~~~y~~~~~----------~~~~e~~ 163 (228)
+|+.........+++..+++|+.++.+++++|+++ ++ +||++||..+|+.... .+++|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~- 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET- 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc-
Confidence 99875443334556788999999999999999874 34 8999999999985321 124555
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+..|.+.|+.+|..+|.+++.++++++++++++|++.+|||++.. ..+++.++.++.
T Consensus 159 ----~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~--~~~~~~~~~~~~ 216 (352)
T PRK10084 159 ----TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNAL 216 (352)
T ss_pred ----CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc--cchHHHHHHHHh
Confidence 5667888999999999999999988889999999999999998644 347887777654
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=191.35 Aligned_cols=179 Identities=21% Similarity=0.312 Sum_probs=135.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh--hhhhcCCCceEEEeccCCCcc-----cCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
+|+|+||||+||||++++++|++.| ++|+++.|........ ...+.....+.++.+|+++.. +.++|+|||+
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 87 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFHV 87 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEEe
Confidence 7899999999999999999999999 9999888854322111 111111135788999998864 2479999999
Q ss_pred cCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCC----CCCCCCCCCCC----CCCCCCC
Q 027129 105 ACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----VHPQDESYWGN----VNPIGVR 173 (228)
Q Consensus 105 a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~----~~~~~e~~~~~----~~~~~~~ 173 (228)
|+... ....++ ...++.|+.++.++++++++.+ + |||++||..+|+... ..+.+|+.|.. ..+..|.
T Consensus 88 A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 88 ATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred CCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 98532 112233 3457899999999999998864 5 899999999998532 23456654321 1123466
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+.|+.+|.++|.+++.++++++++++++||+++|||++..
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~ 205 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTS 205 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccC
Confidence 7899999999999999998889999999999999998654
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=186.20 Aligned_cols=182 Identities=24% Similarity=0.344 Sum_probs=144.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch--hhhhhcC-CCceEEEeccCCCccc-----CCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIG-HPRFELIRHDVTEPLL-----IEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~d~~~~~~-----~~~D~vi 102 (228)
.+|+|+||||+||||++++++|+.+| |.|++++|++..... .+.++.. ..++.++.+|+.+... .++|+||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence 47999999999999999999999999 999999997665322 3444432 3458999999998743 4899999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccC-----CCCCCCCCCCCCCCCCCC-CCC
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGD-----PLVHPQDESYWGNVNPIG-VRS 174 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~-----~~~~~~~e~~~~~~~~~~-~~~ 174 (228)
|.|.+..+.... ...+.++..++++.+++++|++.+ + |+|++||...-.. ..+..++|+.|.+.+... ...
T Consensus 84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~ 162 (327)
T KOG1502|consen 84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL 162 (327)
T ss_pred EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence 999765443322 233788999999999999999998 5 8999999865432 223467887775433221 226
Q ss_pred hHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
.|..+|..+|+.+++++.+.+++.+.+.|+.|+||...+.
T Consensus 163 ~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~ 202 (327)
T KOG1502|consen 163 WYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPS 202 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccc
Confidence 8999999999999999999999999999999999998774
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=190.92 Aligned_cols=178 Identities=21% Similarity=0.295 Sum_probs=129.5
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC------cc-----cCCccEEEE
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE------PL-----LIEVDQIYH 103 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~-----~~~~D~vi~ 103 (228)
|+||||+||||++|+++|++.| ++++++.|+...... .... ..+++ .|..+ .. ..++|+|||
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~~~~~-~~~~---~~~~~--~d~~~~~~~~~~~~~~~~~~~~d~Vih 74 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTK-FVNL---VDLDI--ADYMDKEDFLAQIMAGDDFGDIEAIFH 74 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCCcchH-HHhh---hhhhh--hhhhhHHHHHHHHhcccccCCccEEEE
Confidence 7999999999999999999999 876666554332111 1010 01111 11111 11 126999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
+||..... ..+....++.|+.++.+++++|++.+++||++||..+|+.....+.+|. .+..|.+.|+.+|..+
T Consensus 75 ~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 147 (308)
T PRK11150 75 EGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSKFLF 147 (308)
T ss_pred CceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHHHHH
Confidence 99864432 2244567899999999999999998889999999999997655556666 5667778899999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHH
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQA 226 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~ 226 (228)
|++++.++.+++++++++||+++|||++.... ..++..++.++
T Consensus 148 E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~ 192 (308)
T PRK11150 148 DEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQL 192 (308)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHH
Confidence 99999998888999999999999999875421 22444444444
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=188.42 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=133.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---C-CCceEEEeccCCCcc-----cCCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G-HPRFELIRHDVTEPL-----LIEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~d~~~~~-----~~~~D~v 101 (228)
.+|+||||||+||||++++++|+++| ++|++++|+..... ....+. . ...++++.+|+++.. +.++|+|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPK-KTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchh-hHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 46899999999999999999999999 99999998543321 111111 1 236888999998864 3479999
Q ss_pred EEccCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccce--eccCCC---CCCCCCCCCCCCC-CCCC
Q 027129 102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSE--VYGDPL---VHPQDESYWGNVN-PIGV 172 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~--~y~~~~---~~~~~e~~~~~~~-~~~~ 172 (228)
||+|+.... ...++ ...++.|+.++.++++++++. ++ |||++||.+ +|+... ..+++|+.+.... +...
T Consensus 81 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~ 158 (322)
T PLN02662 81 FHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES 158 (322)
T ss_pred EEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence 999986431 22233 367899999999999999887 66 899999986 465321 2345665211100 0111
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+.|+.+|..+|++++.+.++++++++++||+.+|||++..
T Consensus 159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~ 199 (322)
T PLN02662 159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQP 199 (322)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCC
Confidence 25799999999999999988889999999999999998654
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=191.61 Aligned_cols=161 Identities=28% Similarity=0.329 Sum_probs=122.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------cCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~D~vi~~a 105 (228)
|||||+||+|+||+++.++|...| ++|+++.|. +.|+.+.. ..++|+|||||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG-YEVIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccc
Confidence 899999999999999999999988 999999773 44454432 12699999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
|.+.+...+.+++..+++|+.++.+++++|.+.++++||+||..||++....+++|+ ++..|.+.||.+|.++|+
T Consensus 60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~YG~~K~~~E~ 134 (286)
T PF04321_consen 60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVYGRSKLEGEQ 134 (286)
T ss_dssp ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHHHHHHHHHHH
T ss_pred eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHHHHHHHHHHH
Confidence 988777777889999999999999999999999999999999999998878888888 688999999999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+++.. -+..|+|++.+||+... .++..+++.+.
T Consensus 135 ~v~~~~----~~~~IlR~~~~~g~~~~----~~~~~~~~~~~ 168 (286)
T PF04321_consen 135 AVRAAC----PNALILRTSWVYGPSGR----NFLRWLLRRLR 168 (286)
T ss_dssp HHHHH-----SSEEEEEE-SEESSSSS----SHHHHHHHHHH
T ss_pred HHHHhc----CCEEEEecceecccCCC----chhhhHHHHHh
Confidence 998743 37999999999999333 27777776653
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=182.48 Aligned_cols=187 Identities=28% Similarity=0.440 Sum_probs=157.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCC-chhhhhhcCCCceEEEeccCCCcccC-------CccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~ 103 (228)
++++||||.||||++.+..+...- +++.+.++....-. ...+......+...++++|+.+.... ++|.|||
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 899999999999999999999873 26676766643322 23334444567899999999987432 7999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCC-CCCCCCCCCCCCCChHHHhH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQD-ESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~-e~~~~~~~~~~~~~~y~~sK 180 (228)
+|+.++......++.+..+.|+.++..|++.++..|. +||++||..|||+....... |. +.++|.++|+.+|
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAasK 161 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAASK 161 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHHH
Confidence 9998887777788889999999999999999999964 79999999999988766555 55 7888999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+++|+.+++|.++++++++++|.++||||++.. -.++|.||.-.
T Consensus 162 aAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~--~klipkFi~l~ 205 (331)
T KOG0747|consen 162 AAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYP--EKLIPKFIKLA 205 (331)
T ss_pred HHHHHHHHHHhhccCCcEEEEeccCccCCCcCh--HHHhHHHHHHH
Confidence 999999999999999999999999999999998 45999888743
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=187.38 Aligned_cols=181 Identities=39% Similarity=0.513 Sum_probs=139.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCc-cEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEV-DQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-D~vi~~a~ 106 (228)
|+||||||+||||++|+++|++.| ++|++++|......... ..+.++.+|+++... ... |+|||+|+
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 459999999999999999999999 99999999544333211 356777777777532 234 99999998
Q ss_pred CCCcccccC-CchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCC-CCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 107 PASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~-~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
......... ++...++.|+.++.+++++|++.++ +||+.||.++|+.. ...+.+|+. .+..|.+.|+.+|..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~ 149 (314)
T COG0451 74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAA 149 (314)
T ss_pred cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHH
Confidence 765443333 3456889999999999999999777 89998887877754 233566653 3555555899999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-ccHHHHHHH
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIA 224 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-~~~~~~~i~ 224 (228)
|+.++.+...++++++++||+.+|||++.... ++++..++.
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~ 191 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIR 191 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHH
Confidence 99999998877999999999999999988742 245555443
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=190.52 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=134.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC----CCceEEEeccCCCccc-----CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL-----IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~-----~~~D~v 101 (228)
+.|+||||||+||||++++++|+++| ++|++++|...... ....... ...+.++.+|+.+... .++|+|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVK-KVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhH-HHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 36899999999999999999999999 99999988543322 1111111 1257888999987532 379999
Q ss_pred EEccCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCC-CCC-CCCCCCCCC----CCCCC
Q 027129 102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHP-QDESYWGNV----NPIGV 172 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~-~~~-~~e~~~~~~----~~~~~ 172 (228)
||+|+.... ...++ ...+++|+.++.++++++++.+ + |||++||.++|+... ..+ ++|..+... .+..+
T Consensus 82 iH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (351)
T PLN02650 82 FHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMT 159 (351)
T ss_pred EEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccc
Confidence 999986432 12233 4678999999999999999977 5 899999997765432 223 456533211 12234
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+.|+.+|..+|++++.++++++++++++||+++|||++..
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~ 200 (351)
T PLN02650 160 GWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFIST 200 (351)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCC
Confidence 45799999999999999998899999999999999998654
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=185.61 Aligned_cols=187 Identities=33% Similarity=0.508 Sum_probs=144.9
Q ss_pred EEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL 104 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~ 104 (228)
+|+||||||+||++++++|++.+ .++|++++|.... ..+..........+.++.+|+.+... . ++|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 58999999999999999999876 3688888764221 12222222223467888999988642 2 38999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC--CeEEEEccceeccCCCCC-CCCCCCCCCCCCCCCCChHHHhHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVH-PQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~r~i~~Ss~~~y~~~~~~-~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
|+.........+++..++.|+.++.++++++.+.+ +++|++||..+|+..... +.+|. .+..+.+.|+.+|.
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 155 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKA 155 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCchHHHHH
Confidence 98765444445667788999999999999998864 389999999999865433 46666 46667788999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+|.+++.++.+++++++++||+.+|||+... ..+++.++.++.
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~--~~~~~~~~~~~~ 199 (317)
T TIGR01181 156 ASDHLVRAYHRTYGLPALITRCSNNYGPYQFP--EKLIPLMITNAL 199 (317)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCCc--ccHHHHHHHHHh
Confidence 99999999988889999999999999998765 347787777654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=184.34 Aligned_cols=179 Identities=23% Similarity=0.367 Sum_probs=134.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCccc-----CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL-----IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~-----~~~D~v 101 (228)
.+|+|+||||+||||++++++|+++| ++|+++.|+..... ...... ....++++.+|+++... .++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v 81 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRK-KTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV 81 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchH-HHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence 46899999999999999999999999 99999988544322 111111 12468889999988643 379999
Q ss_pred EEccCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceec--cCC---CCCCCCCCCCCCCC-CCCC
Q 027129 102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVN-PIGV 172 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y--~~~---~~~~~~e~~~~~~~-~~~~ 172 (228)
||+|+.... ...++ ...++.|+.++.++++++++. ++ |||++||.++| +.. ...+++|+.|.... +..+
T Consensus 82 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 159 (322)
T PLN02986 82 FHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRET 159 (322)
T ss_pred EEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcc
Confidence 999986432 11223 356889999999999999886 56 89999998754 432 12346666443211 1124
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+.|+.+|..+|..++.+.++++++++++||+.+|||+..+
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~ 200 (322)
T PLN02986 160 KNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQP 200 (322)
T ss_pred ccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCC
Confidence 57799999999999999998889999999999999998654
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=186.14 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=140.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhc-----CCCceEEEeccCCCcccC-------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-----GHPRFELIRHDVTEPLLI-------E 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-----~~~~~~~~~~d~~~~~~~-------~ 97 (228)
++|+||||||+||||++++++|++.| ++|++++|..... ........ ....+.++.+|+++.... +
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 36899999999999999999999999 9999998854321 11121111 123578899999886322 5
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC------eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+|+|||+|+.........++...+++|+.++.++++++++.++ +||++||..+||.... +.+|+ .+..
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~ 157 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH 157 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence 8999999997654434455667779999999999999998774 7999999999997654 67776 5777
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
|.+.|+.+|.++|.+++.++.+++++++..|+.++|||+...
T Consensus 158 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~ 199 (340)
T PLN02653 158 PRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGE 199 (340)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCc
Confidence 888999999999999999998889999999999999997543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=185.44 Aligned_cols=175 Identities=27% Similarity=0.418 Sum_probs=139.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hhhhhc--CCCceEEEeccCCCccc-------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWI--GHPRFELIRHDVTEPLL-------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~~d~~~~~~-------~~ 97 (228)
..+|+|+|||||||||++++++|++.| ++|++++|....... ...... ...++.++.+|+++... .+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 346899999999999999999999999 999999875332221 111111 12357888999988642 26
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
+|+|||+|+.........++...++.|+.++.++++++++.++ +||++||..+|+.....+++|+ .+..+.+.|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y 156 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPY 156 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHH
Confidence 8999999986543333456678899999999999999999887 8999999999987666778887 577777899
Q ss_pred HHhHHHHHHHHHHHHHH-hCCcEEEeeeccccCCC
Q 027129 177 DEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~-~~i~~~ilRp~~i~G~~ 210 (228)
+.+|..+|++++.++.. .+++++++|++++||+.
T Consensus 157 ~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~ 191 (352)
T PLN02240 157 GRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAH 191 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCC
Confidence 99999999999988754 57899999999999975
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=177.87 Aligned_cols=158 Identities=27% Similarity=0.287 Sum_probs=135.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~~a 105 (228)
|++||||++|+||.+|.+.|. .+ ++|++++|. . .|+++.+. .+||+|||+|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~---------------~-----~Ditd~~~v~~~i~~~~PDvVIn~A 58 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GE-FEVIATDRA---------------E-----LDITDPDAVLEVIRETRPDVVINAA 58 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CC-ceEEeccCc---------------c-----ccccChHHHHHHHHhhCCCEEEECc
Confidence 459999999999999999998 55 899999883 1 45555432 2799999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
+.+..+..+.+++..+.+|..++.+++++|++.|.++||+||.+||++..+.++.|+ ++.+|.+.||.||.++|.
T Consensus 59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHHHHHHH
Confidence 999888888889999999999999999999999999999999999999888889998 799999999999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHH
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQ 225 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~ 225 (228)
.++.+. .+..|+|.+++||...+. ++-.+++.
T Consensus 134 ~v~~~~----~~~~I~Rtswv~g~~g~n----Fv~tml~l 165 (281)
T COG1091 134 AVRAAG----PRHLILRTSWVYGEYGNN----FVKTMLRL 165 (281)
T ss_pred HHHHhC----CCEEEEEeeeeecCCCCC----HHHHHHHH
Confidence 998764 578999999999986533 45444443
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=183.22 Aligned_cols=172 Identities=28% Similarity=0.480 Sum_probs=134.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|+|+||||+||||++++++|+++| ++|++++|............ .....+.++.+|+++... .++|+|||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh 79 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH 79 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence 689999999999999999999999 99999876433222211111 112346778889887632 25899999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC-CCCChHHHhHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI-GVRSCYDEGKR 181 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~-~~~~~y~~sK~ 181 (228)
+|+..............++.|+.++.++++++++.++ +||++||..+|+.....+++|+ .+. .|.+.|+.+|.
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~-----~~~~~p~~~Y~~sK~ 154 (338)
T PRK10675 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVES-----FPTGTPQSPYGKSKL 154 (338)
T ss_pred CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccc-----cCCCCCCChhHHHHH
Confidence 9986543333345567889999999999999999887 8999999999987666677777 444 56788999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEeeeccccCCC
Q 027129 182 VAETLMFDYHRQH-GIEIRIARIFNTYGPR 210 (228)
Q Consensus 182 ~~e~~~~~~~~~~-~i~~~ilRp~~i~G~~ 210 (228)
.+|++++.+++++ +++++++|++.+||+.
T Consensus 155 ~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~ 184 (338)
T PRK10675 155 MVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeeeecCCC
Confidence 9999999997654 7999999999999974
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=180.15 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=127.1
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----c--CCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~D~vi~~a~ 106 (228)
+|+|+|||||||++++++|++.| ++|++++|. .+|+.+.. + .++|+|||+|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCc
Confidence 58999999999999999999999 999999883 12333221 1 25799999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
..............++.|+.++.++++++++.+.|||++||.++|+.....+++|+ .+..+.+.|+.+|..+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~-----~~~~~~~~Y~~~K~~~E~~ 134 (287)
T TIGR01214 60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYRED-----DATNPLNVYGQSKLAGEQA 134 (287)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCC-----CCCCCcchhhHHHHHHHHH
Confidence 65433333455677899999999999999988889999999999987666677887 5667778899999999999
Q ss_pred HHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
++.+ +.+++++||+.+||+++.. .++..++..+
T Consensus 135 ~~~~----~~~~~ilR~~~v~G~~~~~---~~~~~~~~~~ 167 (287)
T TIGR01214 135 IRAA----GPNALIVRTSWLYGGGGGR---NFVRTMLRLA 167 (287)
T ss_pred HHHh----CCCeEEEEeeecccCCCCC---CHHHHHHHHh
Confidence 8765 6799999999999998532 2555555543
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=181.39 Aligned_cols=188 Identities=29% Similarity=0.377 Sum_probs=145.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhh-cCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
++.+++||||+||||++++++|++++ ..+|.+++.......-..... .....+.++++|+.+.. +.++ .|+|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 47799999999999999999999987 588999888544221111111 02568999999999864 3467 8888
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
+|+...+.....+.+..+++|+.++.+++++|.+.++ ++||+||..|...... ..-+|+.. .|....+.|+.||.
T Consensus 82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y~~sKa 158 (361)
T KOG1430|consen 82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPYGESKA 158 (361)
T ss_pred eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---CccccccccchHHH
Confidence 8887776666667889999999999999999999999 8999999998765554 33444421 23344468999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.+|+++++.....++.++++||+.||||++.. +++.++..+
T Consensus 159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~----~~~~i~~~~ 199 (361)
T KOG1430|consen 159 LAEKLVLEANGSDDLYTCALRPPGIYGPGDKR----LLPKIVEAL 199 (361)
T ss_pred HHHHHHHHhcCCCCeeEEEEccccccCCCCcc----ccHHHHHHH
Confidence 99999999875557999999999999999876 555555443
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=183.04 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=128.9
Q ss_pred EEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------cCCccEEEEccCCC
Q 027129 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPA 108 (228)
Q Consensus 36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~D~vi~~a~~~ 108 (228)
||||||||||++|+++|++.| +.|+++.+.. .+|+.+.. ..++|+|||+|+..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g-~~v~~~~~~~-------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~ 60 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG-FTNLVLRTHK-------------------ELDLTRQADVEAFFAKEKPTYVILAAAKV 60 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC-CcEEEeeccc-------------------cCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence 699999999999999999999 8777664411 24444432 12689999999865
Q ss_pred Ccc-cccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC-hHHHhHHHHHH
Q 027129 109 SPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRVAET 185 (228)
Q Consensus 109 ~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~-~y~~sK~~~e~ 185 (228)
... ....++...++.|+.++.+++++|++.++ +||++||..+|+.....+.+|+.+.. .+..|.+ .|+.+|.++|+
T Consensus 61 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~e~ 139 (306)
T PLN02725 61 GGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAKIAGIK 139 (306)
T ss_pred cccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHHHHHHH
Confidence 422 22345667889999999999999999987 89999999999976667788874321 1334433 59999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHH
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQ 225 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~ 225 (228)
.++.+++.++++++++||+.+|||++... .+.+++.++..
T Consensus 140 ~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~ 181 (306)
T PLN02725 140 MCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRR 181 (306)
T ss_pred HHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHH
Confidence 99999888899999999999999986421 23455655543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=183.03 Aligned_cols=182 Identities=19% Similarity=0.218 Sum_probs=135.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-------CCceEEEeccCCCcc-----cC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-------HPRFELIRHDVTEPL-----LI 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~-----~~ 96 (228)
...+|+||||||+||||++++++|++.| ++|+++.|+... .+.+..+.. ...+.++.+|+++.. +.
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~-~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQED-KEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 4558999999999999999999999999 999998874322 111212110 124788899998864 33
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccc--eeccCC--CC--CCCCCCCCCCC-
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTS--EVYGDP--LV--HPQDESYWGNV- 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~--~~y~~~--~~--~~~~e~~~~~~- 167 (228)
++|.|||+++...............+.|+.++.++++++++. ++ |||++||. .+|+.. .. ..++|+.+...
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 799999999875433211122345678999999999999986 67 89999996 477642 12 23566543321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.+..+.+.|+.+|..+|++++.++.+++++++++||++||||++.
T Consensus 208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~ 252 (367)
T PLN02686 208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFF 252 (367)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCC
Confidence 244566789999999999999998888999999999999999864
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=178.21 Aligned_cols=171 Identities=25% Similarity=0.350 Sum_probs=131.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~ 104 (228)
++|+|+||||+||||++++++|++.| .++|++++|...+. ..+........+.++.+|+++... .++|+|||+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ-WEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH-HHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 47899999999999999999999985 26899998853321 112222222468889999998643 369999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
||.........++...+++|+.++.++++++.+.++ +||++||.. +..|.+.|+.+|..+
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~-------------------~~~p~~~Y~~sK~~~ 142 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK-------------------AANPINLYGATKLAS 142 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC-------------------CCCCCCHHHHHHHHH
Confidence 997544334455678899999999999999999887 899999952 233456799999999
Q ss_pred HHHHHHHHH---HhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 184 ETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 184 e~~~~~~~~---~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
|.+++.++. .+|++++++||+++|||+. .+++.+...+
T Consensus 143 E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-----~~i~~~~~~~ 183 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSRG-----SVVPFFKSLK 183 (324)
T ss_pred HHHHHHHHhhccccCcEEEEEeecceeCCCC-----CcHHHHHHHH
Confidence 999987543 4689999999999999863 2666666543
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=177.29 Aligned_cols=173 Identities=33% Similarity=0.556 Sum_probs=137.6
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~~a~ 106 (228)
+|+||||||+||++++++|+++| ++|++++|......+..........+.++.+|+.+... .++|+|||+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag 79 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG 79 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence 58999999999999999999999 99998876433222222221111257788889887642 26999999999
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.........++.+.++.|+.++.++++++.+.++ ++|++||..+|+.....+.+|+ .+..+.+.|+.+|..+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPYGRSKLMSER 154 (328)
T ss_pred ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCchHHHHHHHHH
Confidence 7644444455667889999999999999999887 8999999999987666677777 566677889999999999
Q ss_pred HHHHHHHH-hCCcEEEeeeccccCCCCC
Q 027129 186 LMFDYHRQ-HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 186 ~~~~~~~~-~~i~~~ilRp~~i~G~~~~ 212 (228)
.++.++.+ .+++++++||+.+||+...
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~ 182 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPE 182 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCC
Confidence 99999876 6999999999999998643
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=185.18 Aligned_cols=185 Identities=21% Similarity=0.243 Sum_probs=136.2
Q ss_pred chhhhccCCCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchh--hh-hhcC-------------------
Q 027129 24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDN--LR-KWIG------------------- 79 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~--~~-~~~~------------------- 79 (228)
.+.++.. +|+|+|||||||||++++++|++.+ ..+|+++.|........ +. .+..
T Consensus 4 ~i~~~~~-~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~ 82 (491)
T PLN02996 4 SCVQFLE-NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLI 82 (491)
T ss_pred cHHHHhC-CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhh
Confidence 3566766 8999999999999999999999864 25899999965533211 11 1100
Q ss_pred CCceEEEeccCCCcc------------cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEE
Q 027129 80 HPRFELIRHDVTEPL------------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLT 145 (228)
Q Consensus 80 ~~~~~~~~~d~~~~~------------~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~ 145 (228)
..++.++.+|++++. ..++|+|||+|+.... ..+++..++.|+.++.+++++|++. ++ +||++
T Consensus 83 ~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~v 159 (491)
T PLN02996 83 SEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHV 159 (491)
T ss_pred hcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 147899999998431 1379999999986543 3467788999999999999999986 45 79999
Q ss_pred ccceeccCCCCCCCCCCCCCCC--------------------------------------------C---CCCCCChHHH
Q 027129 146 STSEVYGDPLVHPQDESYWGNV--------------------------------------------N---PIGVRSCYDE 178 (228)
Q Consensus 146 Ss~~~y~~~~~~~~~e~~~~~~--------------------------------------------~---~~~~~~~y~~ 178 (228)
||.++||.... .+.|..+... . ...+.+.|+.
T Consensus 160 ST~~vyG~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~ 238 (491)
T PLN02996 160 STAYVCGEKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVF 238 (491)
T ss_pred eeeEEecCCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHh
Confidence 99999986432 2222211100 0 1123357999
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC
Q 027129 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD 215 (228)
Q Consensus 179 sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~ 215 (228)
+|+++|++++.++. +++++++||++|||+.+.+..
T Consensus 239 TK~~aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~ 273 (491)
T PLN02996 239 TKAMGEMLLGNFKE--NLPLVIIRPTMITSTYKEPFP 273 (491)
T ss_pred hHHHHHHHHHHhcC--CCCEEEECCCEeccCCcCCCC
Confidence 99999999988753 799999999999999987753
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=175.43 Aligned_cols=169 Identities=28% Similarity=0.373 Sum_probs=107.0
Q ss_pred EecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCC--chhhhhhc------------CCCceEEEeccCCCccc------
Q 027129 37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGS--KDNLRKWI------------GHPRFELIRHDVTEPLL------ 95 (228)
Q Consensus 37 ItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~--~~~~~~~~------------~~~~~~~~~~d~~~~~~------ 95 (228)
|||||||||++++++|++.+. .+|+++.|..... .+.+.+.+ ...++.++.+|++++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999982 2999999954321 11221111 14689999999998753
Q ss_pred -----CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCC-----CC
Q 027129 96 -----IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES-----YW 164 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~-----~~ 164 (228)
.++|+|||||+... +..++....+.|+.++.++++.|.+.+. +|+|+||..+.+..... ..|. ..
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~---~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~-~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN---FNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGT-IEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS-S---BS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT---SSS-HHH--
T ss_pred hhccccccceeeecchhhh---hcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCc-ccccccccccc
Confidence 26999999998544 3456677889999999999999996655 89999996555443322 2111 11
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
.........+.|..||+++|++++..+++.|++++|+||+.|+|.
T Consensus 157 ~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~ 201 (249)
T PF07993_consen 157 DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD 201 (249)
T ss_dssp EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S
T ss_pred cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc
Confidence 111233444689999999999999999888999999999999994
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=176.47 Aligned_cols=171 Identities=27% Similarity=0.401 Sum_probs=134.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~ 107 (228)
|+|+||||+||||+++++.|++.| ++|++++|+...... . ....++++.+|+.+.. ..++|+|||+|+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-~----~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRRN-L----EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD 74 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCccccc-c----ccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence 589999999999999999999999 999999995433211 1 1235788899998753 3478999999975
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCC-CCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~-~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.. ....+++..++.|+.++.++++++++.++ +||++||..+|+.. ...+.+|+... .+....+.|+.+|..+|+
T Consensus 75 ~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~ 150 (328)
T TIGR03466 75 YR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQ 150 (328)
T ss_pred cc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHH
Confidence 32 22345678889999999999999999887 89999999999853 34466666211 122224579999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+++.++.+++++++++||+.+||+++..
T Consensus 151 ~~~~~~~~~~~~~~ilR~~~~~G~~~~~ 178 (328)
T TIGR03466 151 AALEMAAEKGLPVVIVNPSTPIGPRDIK 178 (328)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCCCCC
Confidence 9999988889999999999999998653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=171.81 Aligned_cols=171 Identities=29% Similarity=0.482 Sum_probs=150.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---c-CCCceEEEeccCCCcccC-------CccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPLLI-------EVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~~-------~~D~ 100 (228)
.++||||||.||||++.+.+|++.| +.|++++.......+.+... . +...+.+.++|++|.... ++|.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 5799999999999999999999999 99999998666554444322 2 236799999999997542 7999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC-CCChHHH
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG-VRSCYDE 178 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~-~~~~y~~ 178 (228)
|+|+|+......+-+++..++..|+.++.++++.++++++ .+|+.||+.+||.+...|++|+ .+.. |.+.|+.
T Consensus 81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~-----~~t~~p~~pyg~ 155 (343)
T KOG1371|consen 81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE-----DPTDQPTNPYGK 155 (343)
T ss_pred EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc-----CCCCCCCCcchh
Confidence 9999998887788888889999999999999999999998 7999999999999999999998 4555 7888999
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeeeccccC
Q 027129 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 179 sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
+|..+|.....+...++..++.+|..+++|
T Consensus 156 tK~~iE~i~~d~~~~~~~~~~~LRyfn~~g 185 (343)
T KOG1371|consen 156 TKKAIEEIIHDYNKAYGWKVTGLRYFNVIG 185 (343)
T ss_pred hhHHHHHHHHhhhccccceEEEEEeccccC
Confidence 999999999999988889999999999999
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=174.01 Aligned_cols=182 Identities=17% Similarity=0.219 Sum_probs=132.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc--hhhhhhc-CCCceEEEeccCCCcc-----cCCccE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQ 100 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~d~~~~~-----~~~~D~ 100 (228)
..++++|+||||+||||++++++|+++| ++|+++.|+..... .....+. ...++.++.+|+++.. +.++|.
T Consensus 3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~ 81 (297)
T PLN02583 3 DESSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSG 81 (297)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCE
Confidence 3457899999999999999999999999 99999988432211 1112111 1235788899998863 347999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceec--cCC---CCCCCCCCCCCCCC-CCCC
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVN-PIGV 172 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y--~~~---~~~~~~e~~~~~~~-~~~~ 172 (228)
|+|+++.... ...+.+..++.|+.++.++++++.+. ++ |||++||...+ +.. ...+++|+.|.... ...+
T Consensus 82 v~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 159 (297)
T PLN02583 82 LFCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKF 159 (297)
T ss_pred EEEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhc
Confidence 9998753321 12234678899999999999999886 45 89999998664 311 12356666442211 1112
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
...|+.+|..+|+.++.++++++++++++||+.||||+...
T Consensus 160 ~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~ 200 (297)
T PLN02583 160 KLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQ 200 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCC
Confidence 23699999999999999988789999999999999998653
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-25 Score=175.12 Aligned_cols=170 Identities=28% Similarity=0.371 Sum_probs=125.5
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceE----EEeccCCCccc-----C--CccE
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFE----LIRHDVTEPLL-----I--EVDQ 100 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~----~~~~d~~~~~~-----~--~~D~ 100 (228)
||||||+|.||+.|+++|++.+..++++++++..+..+..+++ ....++. .+-+|+.|... . ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 7999999999999999999998789999999543333322332 1222343 45788887632 3 8999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHh
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG 179 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~s 179 (228)
|||+|+.-+.+.-+.++.+.++.|+.++++++++|.++++ +||++||.. ..+|.+.||.|
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~PtnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHHHHH
Confidence 9999998888788889999999999999999999999998 999999973 44577889999
Q ss_pred HHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCCCCCccHHHHHHHHHhC
Q 027129 180 KRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228 (228)
Q Consensus 180 K~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~~ 228 (228)
|..+|+++..+.... +.+++++|+|+|.|+. ++++|.|.+++.+
T Consensus 142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-----GSVip~F~~Qi~~ 188 (293)
T PF02719_consen 142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-----GSVIPLFKKQIKN 188 (293)
T ss_dssp HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-----TSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-----CcHHHHHHHHHHc
Confidence 999999999987654 6899999999999964 6699999988753
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-24 Score=178.13 Aligned_cols=181 Identities=27% Similarity=0.358 Sum_probs=150.8
Q ss_pred cchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcccC---
Q 027129 23 LRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLI--- 96 (228)
Q Consensus 23 ~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~--- 96 (228)
..+..++. +|+||||||+|-||+.+++++++.+..++++++|+..+......++. +..++.++-+|+.|.+..
T Consensus 242 ~~i~~~~~-gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~ 320 (588)
T COG1086 242 ELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERA 320 (588)
T ss_pred HHHHhHcC-CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHH
Confidence 34444544 89999999999999999999999988999999996555443333332 346788888999987532
Q ss_pred ----CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 97 ----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 97 ----~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++|+|+|+|+.-+.+.-+.++.+.++.|+.|+.|++++|.++++ +||++||. ...+
T Consensus 321 ~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD-------------------KAV~ 381 (588)
T COG1086 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD-------------------KAVN 381 (588)
T ss_pred HhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC-------------------cccC
Confidence 59999999999888888899999999999999999999999998 89999997 3556
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCCCCCccHHHHHHHHHhC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~~ 228 (228)
|.+.||.+|..+|+.+..+.... +.+++++|.|+|.|+. ++++|-|.+.+.+
T Consensus 382 PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~ 436 (588)
T COG1086 382 PTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAE 436 (588)
T ss_pred CchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHc
Confidence 77889999999999999987743 3899999999999974 6699999888753
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=170.07 Aligned_cols=178 Identities=24% Similarity=0.296 Sum_probs=129.1
Q ss_pred EEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc---------CCccEEEEc
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHL 104 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~D~vi~~ 104 (228)
|||||||||||++++++|++.| + .|++++|..... ..... ....+..|+.+... .++|+|||+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g-~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~ 73 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERG-ITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQ 73 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcC-CceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEEC
Confidence 6899999999999999999999 6 788887743221 11111 11234455554321 479999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
|+... ....++...+++|+.++.+++++|++.+++||++||.++|+... .+.+|+. .+..|.+.|+.+|..+|
T Consensus 74 A~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~-~~~~e~~----~~~~p~~~Y~~sK~~~e 146 (314)
T TIGR02197 74 GACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGE-AGFREGR----ELERPLNVYGYSKFLFD 146 (314)
T ss_pred ccccC--ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCC-CCccccc----CcCCCCCHHHHHHHHHH
Confidence 98643 22345667889999999999999999888999999999998754 3455542 22346778999999999
Q ss_pred HHHHHHHH--HhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHH
Q 027129 185 TLMFDYHR--QHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQA 226 (228)
Q Consensus 185 ~~~~~~~~--~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~ 226 (228)
.+++.+.. ..+++++++||+.+|||++.... ..++..++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~ 192 (314)
T TIGR02197 147 QYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQI 192 (314)
T ss_pred HHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHH
Confidence 99987643 23679999999999999865321 23565655544
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=164.87 Aligned_cols=191 Identities=23% Similarity=0.256 Sum_probs=139.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc--hhhhhhcC---------CCceEEEeccCCCcccC-----
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIG---------HPRFELIRHDVTEPLLI----- 96 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~---------~~~~~~~~~d~~~~~~~----- 96 (228)
+++|+||||||+|++++..|+..-..+|++++|-..... +++++... ..++..+.+|+..+.+.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 589999999999999999999886469999999444221 22222222 35789999999876442
Q ss_pred ------CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCe-EEEEccceeccCCCCCCCCCC----CCC
Q 027129 97 ------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLVHPQDES----YWG 165 (228)
Q Consensus 97 ------~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r-~i~~Ss~~~y~~~~~~~~~e~----~~~ 165 (228)
.+|.|||+|+..+ .-.++.+....|+.+++.+++.|...+.| ++|+||++++........+++ +..
T Consensus 81 ~~~La~~vD~I~H~gA~Vn---~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAALVN---HVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecchhhc---ccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 5999999998543 34567788899999999999999887665 999999999764433222222 122
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC--CCccHHHHHHHHHh
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI--DDGRVVSNFIAQAI 227 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~--~~~~~~~~~i~~~~ 227 (228)
...-..+.+.|++||+++|.++++.... |++++|+|||.|.|..... +..-++..|+..++
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~ 220 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLL 220 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHH
Confidence 2223345578999999999999998777 9999999999999987632 11224555555443
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=161.62 Aligned_cols=153 Identities=18% Similarity=0.270 Sum_probs=112.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
.|+||||||+||||++|+++|+++| ++|+...+... ..+. +..++.+ .++|+|||+||.+...
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~~~~~-~~~~------------v~~~l~~---~~~D~ViH~Aa~~~~~ 71 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGSGRLE-NRAS------------LEADIDA---VKPTHVFNAAGVTGRP 71 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEEEecCccC-CHHH------------HHHHHHh---cCCCEEEECCcccCCC
Confidence 4799999999999999999999999 99876433111 1111 1111111 3689999999976532
Q ss_pred c---ccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCC------CCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 112 F---YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV------HPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 112 ~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~------~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
. ...++...+++|+.++.+++++|++.+++++++||.++|+.... .+++|++ .+..+.+.|+.+|.+
T Consensus 72 ~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~~ 147 (298)
T PLN02778 72 NVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKAM 147 (298)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHHH
Confidence 2 33567788999999999999999999988888888888875321 2355552 233344789999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+|.++..++ +..++|+..++|++
T Consensus 148 ~E~~~~~y~-----~~~~lr~~~~~~~~ 170 (298)
T PLN02778 148 VEELLKNYE-----NVCTLRVRMPISSD 170 (298)
T ss_pred HHHHHHHhh-----ccEEeeecccCCcc
Confidence 999998875 35788888888865
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=164.50 Aligned_cols=188 Identities=25% Similarity=0.326 Sum_probs=133.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCc--hhhhhhc--------C-C-CceEEEeccCCCccc-----
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK--DNLRKWI--------G-H-PRFELIRHDVTEPLL----- 95 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~--~~~~~~~--------~-~-~~~~~~~~d~~~~~~----- 95 (228)
+|+|||||||||++++++|+++|. .+|+++.|...... +.+.... . . .++.++.+|++++.+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 589999999999999999999972 46999999544211 1111110 0 0 468899999876531
Q ss_pred ------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 ------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|+|||+|+.... ...+....+.|+.++.++++++.+.+. +|+++||.++|+.....+..|+......
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 369999999986432 244566778999999999999998887 6999999999976433333333211111
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHH
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQ 225 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~ 225 (228)
...+.+.|+.+|..+|.+++.+.+. |++++++||+.+||+..... ...++..++..
T Consensus 158 ~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~ 215 (367)
T TIGR01746 158 PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKG 215 (367)
T ss_pred ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHH
Confidence 2233467999999999999887665 99999999999999743321 12345555544
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-22 Score=177.08 Aligned_cols=168 Identities=31% Similarity=0.363 Sum_probs=127.1
Q ss_pred CEEEEecCcchhHHHHHHHHH--hcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc----------CC
Q 027129 33 MRILVTGGAGFIGSHLVDKLM--ENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL----------IE 97 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~--~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------~~ 97 (228)
|+|||||||||||++++++|+ ..+ ++|++++|... ........ ...+++++.+|+++... .+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~--~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQS--LSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcch--HHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence 689999999999999999999 467 99999999432 12222111 12468899999988421 57
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
+|+|||+|+.... ........+.|+.++.+++++|++.++ +||++||..+|+.... ..+|+.+. .+..+.+.|
T Consensus 78 ~D~Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~--~~~~~~~~Y 151 (657)
T PRK07201 78 IDHVVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFD--EGQGLPTPY 151 (657)
T ss_pred CCEEEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccch--hhcCCCCch
Confidence 9999999986432 234566779999999999999999887 8999999999986432 34444221 122334679
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
+.+|.++|++++. ..+++++++||+.|||+...
T Consensus 152 ~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~ 184 (657)
T PRK07201 152 HRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRT 184 (657)
T ss_pred HHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCC
Confidence 9999999999874 24899999999999998653
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=159.12 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=117.0
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCccccc
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYK 114 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~~~~ 114 (228)
||||||+||||++++++|++.| ++|++++|+......... ..+.....+.......++|+|||+|+.......+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~ 74 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRW 74 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccC
Confidence 6899999999999999999999 999999996554322110 1111111122223445899999999864432111
Q ss_pred --CCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHH
Q 027129 115 --YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189 (228)
Q Consensus 115 --~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~ 189 (228)
......++.|+.++.++++++++.++ +||+.|+.++|+.....+++|+ .+..+.+.|+..+...|..+..
T Consensus 75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~-----~~~~~~~~~~~~~~~~e~~~~~ 149 (292)
T TIGR01777 75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEE-----DSPAGDDFLAELCRDWEEAAQA 149 (292)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcc-----cCCCCCChHHHHHHHHHHHhhh
Confidence 23456778999999999999999885 3666677778987666677777 3344545677777777776654
Q ss_pred HHHHhCCcEEEeeeccccCCCC
Q 027129 190 YHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 190 ~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
. .+.+++++++||+.+|||++
T Consensus 150 ~-~~~~~~~~ilR~~~v~G~~~ 170 (292)
T TIGR01777 150 A-EDLGTRVVLLRTGIVLGPKG 170 (292)
T ss_pred c-hhcCCceEEEeeeeEECCCc
Confidence 4 34589999999999999964
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=168.37 Aligned_cols=182 Identities=20% Similarity=0.243 Sum_probs=132.8
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCc--hhhh-hhc-------------------CC
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLR-KWI-------------------GH 80 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~--~~~~-~~~-------------------~~ 80 (228)
+.+++. +|+|||||||||||++|+++|++.+. .+|+++.|...... +.+. .+. ..
T Consensus 113 I~~f~~-~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~ 191 (605)
T PLN02503 113 IAEFLR-GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFML 191 (605)
T ss_pred hhhhhc-CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCcccccccc
Confidence 444555 89999999999999999999998752 48899999654321 1221 111 02
Q ss_pred CceEEEeccCCCccc-----------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEcc
Q 027129 81 PRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTST 147 (228)
Q Consensus 81 ~~~~~~~~d~~~~~~-----------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss 147 (228)
.++..+.+|+++..+ .++|+|||+|+... ...+++..+++|+.++.+++++|++.+ . +||++||
T Consensus 192 ~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~---f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST 268 (605)
T PLN02503 192 SKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT---FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST 268 (605)
T ss_pred ccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc---cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence 468889999998632 36999999998654 335677889999999999999999875 3 7999999
Q ss_pred ceeccCCCCCCCCCCCCCCC--------------------C----------------------------------CCCCC
Q 027129 148 SEVYGDPLVHPQDESYWGNV--------------------N----------------------------------PIGVR 173 (228)
Q Consensus 148 ~~~y~~~~~~~~~e~~~~~~--------------------~----------------------------------~~~~~ 173 (228)
.++||... ..+.|..++.. + .....
T Consensus 269 ayVyG~~~-G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~p 347 (605)
T PLN02503 269 AYVNGQRQ-GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQ 347 (605)
T ss_pred ceeecCCC-CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCC
Confidence 99998763 24444433200 0 01122
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+.|..+|+++|++++.... +++++|+||+.|.+.-..+
T Consensus 348 NtYt~TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP 385 (605)
T PLN02503 348 DTYVFTKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDP 385 (605)
T ss_pred ChHHHHHHHHHHHHHHhcC--CCCEEEEcCCEecccccCC
Confidence 6799999999999987653 7999999999995544433
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-21 Score=159.99 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=118.3
Q ss_pred CCEEEEe----cCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh-------hhhhcCCCceEEEeccCCCcc----cC
Q 027129 32 NMRILVT----GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-------LRKWIGHPRFELIRHDVTEPL----LI 96 (228)
Q Consensus 32 ~~~vlIt----GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~----~~ 96 (228)
+|+|+|| |||||||++++++|+++| |+|++++|........ ... +....++++.+|+.+.. ..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~-l~~~~v~~v~~D~~d~~~~~~~~ 129 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSE-LSSAGVKTVWGDPADVKSKVAGA 129 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhH-hhhcCceEEEecHHHHHhhhccC
Confidence 4799999 999999999999999999 9999999965431110 001 11235788888887621 13
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
++|+|||+++. +...+.+++++|++.++ |||++||.++|+.....+..|. .+..+..
T Consensus 130 ~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~-----~~~~p~~- 187 (378)
T PLN00016 130 GFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG-----DAVKPKA- 187 (378)
T ss_pred CccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC-----CcCCCcc-
Confidence 79999998751 24467889999999998 8999999999987655566665 3444432
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+|..+|.+++ +.+++++++||+.+||++.... +...++.++
T Consensus 188 ---sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~~---~~~~~~~~~ 228 (378)
T PLN00016 188 ---GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNKD---CEEWFFDRL 228 (378)
T ss_pred ---hHHHHHHHHH----HcCCCeEEEeceeEECCCCCCc---hHHHHHHHH
Confidence 7999998764 3589999999999999976532 444444433
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=152.53 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=112.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~ 107 (228)
|+|+|||||||+|++++++|++.| ++|++++|+..+. .. .....++++.+|+++.. +.++|+|||+++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~----~~-l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKA----SF-LKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHh----hh-HhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 689999999999999999999999 9999999953221 11 11236889999998863 3589999998753
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
. ..+.....+.|+.++.+++++|++.++ |||++||.+.+. .+.+.|..+|..+|+.
T Consensus 75 ~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~------------------~~~~~~~~~K~~~e~~ 131 (317)
T CHL00194 75 R-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ------------------YPYIPLMKLKSDIEQK 131 (317)
T ss_pred C-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc------------------cCCChHHHHHHHHHHH
Confidence 2 223445678899999999999999998 899999964321 0113488999999987
Q ss_pred HHHHHHHhCCcEEEeeeccccCC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
++ +++++++++||+.+|+.
T Consensus 132 l~----~~~l~~tilRp~~~~~~ 150 (317)
T CHL00194 132 LK----KSGIPYTIFRLAGFFQG 150 (317)
T ss_pred HH----HcCCCeEEEeecHHhhh
Confidence 64 35899999999988864
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=155.10 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=117.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh--hhhh-cCCCceEEEeccCCCccc-----C----
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKW-IGHPRFELIRHDVTEPLL-----I---- 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~d~~~~~~-----~---- 96 (228)
...+|+|+|||||||||++++++|+++| ++|++++|+..+.... .... .....++++.+|+++... .
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3557899999999999999999999999 9999999965432110 1111 112468899999998642 1
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
++|+||||++.... .....+++|+.++.++++++++.++ |||++||.++|+ +...
T Consensus 136 ~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~-------------------p~~~ 191 (390)
T PLN02657 136 PVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK-------------------PLLE 191 (390)
T ss_pred CCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC-------------------cchH
Confidence 59999999874221 1224467899999999999999988 899999987652 1234
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
|..+|...|..++. .+.+++++++||+.+||+
T Consensus 192 ~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~ 223 (390)
T PLN02657 192 FQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKS 223 (390)
T ss_pred HHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcc
Confidence 88999999998765 346899999999999975
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=146.49 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=120.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~ 97 (228)
.|+++||||+|+||++++++|++.| ++|+++.|+. +....+.. ..++.++.+|+++... .+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAATVRRP----DALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGR 76 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999 9999999843 22222111 2367889999998632 35
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||........ ++.+..++.|+.++.++++++ ++.+. +||++||.....
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 140 (276)
T PRK06482 77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI---------------- 140 (276)
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------
Confidence 89999999976543222 234567889999999999986 45555 899999975321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccc---cCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT---YGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i---~G~~~ 211 (228)
+..+.+.|+.+|+..|.+++.++.+ ++++++++||+.+ ||++.
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~ 189 (276)
T PRK06482 141 AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGL 189 (276)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccc
Confidence 1123467999999999999998876 5999999999988 66654
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-20 Score=163.77 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=115.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEE-EEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
..|+||||||+||||++|+++|.+.| ++|. ...+. ...+.+... + ...++|+|||||+.+.
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~~~~~l--~d~~~v~~~------------i---~~~~pd~Vih~Aa~~~ 440 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEYGKGRL--EDRSSLLAD------------I---RNVKPTHVFNAAGVTG 440 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEeecccc--ccHHHHHHH------------H---HhhCCCEEEECCcccC
Confidence 35899999999999999999999999 8883 32220 011111111 0 0136999999999764
Q ss_pred cc---cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCC------CCCCCCCCCCCCCCCCC-CChHHHh
Q 027129 110 PI---FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL------VHPQDESYWGNVNPIGV-RSCYDEG 179 (228)
Q Consensus 110 ~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~------~~~~~e~~~~~~~~~~~-~~~y~~s 179 (228)
.. ....+++..+++|+.++.+++++|++.++++|++||.++|+... ..+++|+ ++..+ .+.|+.+
T Consensus 441 ~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~-----~~~~~~~~~Yg~s 515 (668)
T PLN02260 441 RPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEE-----DKPNFTGSFYSKT 515 (668)
T ss_pred CCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcC-----CCCCCCCChhhHH
Confidence 32 23457788899999999999999999999888999999986421 2356666 33443 4789999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHH
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFI 223 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i 223 (228)
|.++|++++.+. ++.++|+..+||.+... ...++..++
T Consensus 516 K~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~-~~nfv~~~~ 553 (668)
T PLN02260 516 KAMVEELLREYD-----NVCTLRVRMPISSDLSN-PRNFITKIS 553 (668)
T ss_pred HHHHHHHHHhhh-----hheEEEEEEecccCCCC-ccHHHHHHh
Confidence 999999998763 46788888888754221 123555444
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=143.71 Aligned_cols=165 Identities=19% Similarity=0.123 Sum_probs=123.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|++.| ++|+++.|......+...... ...++.++.+|+.+... .+
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 84 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR 84 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999 998887775443222222211 12457888999987642 36
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|....... .......++.|+.+..++++.+ ++.+. +||++||...+..
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~--------------- 149 (249)
T PRK12825 85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG--------------- 149 (249)
T ss_pred CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC---------------
Confidence 8999999996543321 2234567889999999998886 45555 8999999876532
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~~ 213 (228)
......|+.+|...+.+++.++++ .+++++++||+.++++....
T Consensus 150 -~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~ 196 (249)
T PRK12825 150 -WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEA 196 (249)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccc
Confidence 122357999999999999988765 58999999999999987543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=144.67 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=114.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-c-----c-CCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----L-IEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~-~~~D~vi~~ 104 (228)
+|+|+||||+|+||+.++++|++.| ++|+++.|+..+..... .....++++++|+++. . . .++|+||++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---PQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---ccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 7899999999999999999999999 99999998533221111 1123688899998873 1 2 379999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
+|.... .++...++.|..++.++++++++.+. |||++||.++|+.....+..+.. ...++...|...|..+
T Consensus 93 ~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k~~~ 164 (251)
T PLN00141 93 TGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAKLQA 164 (251)
T ss_pred CCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHHHHH
Confidence 875321 12223357788999999999999887 89999999999754322221110 0112223344567777
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
|.+++ +.+++++++||+.+++..
T Consensus 165 e~~l~----~~gi~~~iirpg~~~~~~ 187 (251)
T PLN00141 165 EKYIR----KSGINYTIVRPGGLTNDP 187 (251)
T ss_pred HHHHH----hcCCcEEEEECCCccCCC
Confidence 76654 358999999999999864
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=143.78 Aligned_cols=159 Identities=14% Similarity=0.017 Sum_probs=119.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||+|+||++++++|++.| ++|++++|+.. ....+.. ..++..+..|+++... .
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~----~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 77 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAG-HRVVGTVRSEA----ARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFG 77 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCc-CEEEEEeCCHH----HHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 99999999432 2222211 2357788899988642 2
Q ss_pred CccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||......... .....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~-------------- 143 (277)
T PRK06180 78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLIT-------------- 143 (277)
T ss_pred CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCC--------------
Confidence 5899999999754332222 234568999999999999853 3444 8999999765421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...|.+++.++.+ +|++++++||+.++++.
T Consensus 144 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 187 (277)
T PRK06180 144 --MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW 187 (277)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence 123467999999999999988765 48999999999997753
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=136.76 Aligned_cols=146 Identities=30% Similarity=0.434 Sum_probs=114.0
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCCCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS 109 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~~~ 109 (228)
|+|+||||++|+.++++|+++| ++|+++.|++. .... ..+++++++|+.+.. +.++|+||++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~----~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS----KAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG----GHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch----hccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 7999999999999999999999 99999999533 3322 468999999999874 348999999996433
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
. ....+++++++++++++ |+|++|+.++|.........+. .. ....|...|...|+.++
T Consensus 73 ~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~e~~~~ 132 (183)
T PF13460_consen 73 K-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED------KP-IFPEYARDKREAEEALR 132 (183)
T ss_dssp T-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT------CG-GGHHHHHHHHHHHHHHH
T ss_pred c-------------cccccccccccccccccccceeeeccccCCCCCccccccc------cc-chhhhHHHHHHHHHHHH
Confidence 2 27788899999999998 8999999999875433211111 11 11468888888887764
Q ss_pred HHHHHhCCcEEEeeeccccCCCCC
Q 027129 189 DYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
+.+++|+++||+.+||+...
T Consensus 133 ----~~~~~~~ivrp~~~~~~~~~ 152 (183)
T PF13460_consen 133 ----ESGLNWTIVRPGWIYGNPSR 152 (183)
T ss_dssp ----HSTSEEEEEEESEEEBTTSS
T ss_pred ----hcCCCEEEEECcEeEeCCCc
Confidence 34899999999999998744
|
... |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=141.31 Aligned_cols=176 Identities=29% Similarity=0.336 Sum_probs=147.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh---hhh--hcCCCceEEEeccCCCccc-------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRK--WIGHPRFELIRHDVTEPLL-------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~--~~~~~~~~~~~~d~~~~~~-------~~~D 99 (228)
+|+.||||-||+-|.+|++.|++.| +.|+++.|........ +.. .....++.+..+|++|... .+||
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 6899999999999999999999999 9999999964432211 111 1223468899999999743 4899
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
-|+|+|+..+...+.+.++...+++..++.+++++.+..+. ||.+.||+..||.....|..|. +|+.|.|+|
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSPY 155 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 155 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCHH
Confidence 99999999988888899999999999999999999998653 8999999999999999999999 899999999
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+.+|..+......|.+.||+-.+.-...+==+|.+..
T Consensus 156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge 192 (345)
T COG1089 156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGE 192 (345)
T ss_pred HHHHHHHHheeeehHhhcCceeecceeecCCCCCCcc
Confidence 9999999999999999999877765555555555444
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=145.06 Aligned_cols=164 Identities=17% Similarity=0.048 Sum_probs=120.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||++++++|++.| ++|+++.|++....+....+.. ...+.++++|+++... .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 9999999965433332222211 2357788999988642 24
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHH----HHHHHHHH-HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIG----TLNMLGLA-KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~----~~~l~~~~-~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|+|||++|........ +..+..++.|+.+ +..+++++ ++.+. +||++||...+.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~--------------- 149 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE--------------- 149 (262)
T ss_pred CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC---------------
Confidence 89999999975432221 2345667789998 55566666 55555 899999975431
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
...+.+.|+.+|...+.+++.++++ .+++++++||+.++++..
T Consensus 150 -~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~ 195 (262)
T PRK13394 150 -ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLV 195 (262)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhh
Confidence 1123356999999999999988776 489999999999999853
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=146.64 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=125.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||.+++++|++.| ++|++++|+..+..+....+. ....+.++..|+++... .+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999 999999985332222222221 12357888999988632 24
Q ss_pred ccEEEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHHHH----cC---CeEEEEccceeccCCCC----CCC--
Q 027129 98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSEVYGDPLV----HPQ-- 159 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~r~i~~Ss~~~y~~~~~----~~~-- 159 (228)
+|++||+||..... ...+.++..+++|+.++..+++++.. .+ .|||++||...+..... .+.
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~ 163 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPA 163 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCcc
Confidence 99999999975321 12234567789999999988887653 22 38999999865432110 000
Q ss_pred CCCCC-------------CCCCCCCCCChHHHhHHHHHHHHHHHHHHh----CCcEEEeeeccccCCCC
Q 027129 160 DESYW-------------GNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 160 ~e~~~-------------~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~----~i~~~ilRp~~i~G~~~ 211 (228)
+.++. ....+..+...|+.||...+.+.+.+++++ |+++++++||.|++++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~ 232 (322)
T PRK07453 164 DLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPL 232 (322)
T ss_pred chhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcc
Confidence 00000 001234566789999999988888887764 79999999999987653
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=141.69 Aligned_cols=167 Identities=20% Similarity=0.085 Sum_probs=124.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+..+.......+.. ...+.++.+|+.+... .+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999 9999999954332222222222 2358889999988532 26
Q ss_pred ccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|...... ...++...++.|+.++..+++++. +.+. +||++||...++ .
T Consensus 84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~---------------~ 148 (251)
T PRK12826 84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPR---------------V 148 (251)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhc---------------c
Confidence 899999998765422 123345678999999999988763 3444 899999986551 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~~ 213 (228)
+....+.|+.+|..++.+++.++.+ .+++++++||+.++|+....
T Consensus 149 ~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~ 196 (251)
T PRK12826 149 GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGN 196 (251)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhh
Confidence 2223356999999999999998765 38999999999999987543
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=155.15 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=119.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----------CCCceEEEeccCCCcc-----
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GHPRFELIRHDVTEPL----- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~d~~~~~----- 94 (228)
+.+++|+||||+|+||++++++|++.| ++|++++|+..+.......+. ...++.++.+|+.+..
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 357899999999999999999999999 999999995433221111110 0135788999998853
Q ss_pred cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 95 ~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
+.++|+|||++|.... ...+....+++|+.++.++++++++.++ |||++||.+.+... ..+ ......
T Consensus 157 LggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~------~~~~sk 224 (576)
T PLN03209 157 LGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPA------AILNLF 224 (576)
T ss_pred hcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----ccc------cchhhH
Confidence 3579999999986432 1123456678999999999999999887 99999998753111 001 112233
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
..|..+|..+|+.+. ++|++|++||||.++++.+
T Consensus 225 ~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d 258 (576)
T PLN03209 225 WGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTD 258 (576)
T ss_pred HHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCcc
Confidence 457777888887764 3599999999999988743
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=143.44 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=123.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++..|+++... .
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999 9999999854322221111111 2357889999987632 3
Q ss_pred CccEEEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||..... ...++++..++.|+.++..+++++.. .+.+||++||...+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------------- 146 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH--------------- 146 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc---------------
Confidence 689999999864321 11233467789999999999998864 223899999986532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+..+...|+.+|...+.+++.++.+ +++++++++|+.++++..
T Consensus 147 -~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~ 192 (258)
T PRK07890 147 -SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPL 192 (258)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHH
Confidence 2233457999999999999999865 389999999999999853
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=141.60 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=121.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hcC--CCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
+++++||||+|+||++++++|++.| ++|++++|+.....+.... +.. ...+.++.+|+++... .
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999 9999999853322222211 111 2357788999988532 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|+|||+||....... ..+.+..++.|+.++.++++++.+. +.+++.+++... . .
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~ 148 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA-----------E-----R 148 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-----------c-----C
Confidence 58999999986543221 1234667899999999999988642 225666655321 1 3
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~~~ 212 (228)
+..+...|+.+|...|.+++.++.++ +++++++||+.++|+...
T Consensus 149 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~ 194 (249)
T PRK09135 149 PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDG 194 (249)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccc
Confidence 45566789999999999999998775 599999999999999764
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=141.66 Aligned_cols=164 Identities=18% Similarity=0.095 Sum_probs=121.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|++.| ++|+++.|+.....+..........+.++++|+++... .++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999998543222222222223457889999998632 268
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|........ ++.+..++.|+.++.++.+.+ ++.+. +||++||...+..
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~---------------- 146 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAG---------------- 146 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccC----------------
Confidence 9999999975432222 223456789999987776654 44555 8999999854321
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+++.++.++ +++++++||+.++++..
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~ 191 (252)
T PRK06138 147 GRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYF 191 (252)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcch
Confidence 1223569999999999999998765 89999999999998753
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-19 Score=169.61 Aligned_cols=191 Identities=23% Similarity=0.253 Sum_probs=136.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC---CCeEEEEcCCCCCCch--hhhhhc---------CCCceEEEeccCCCccc--
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKD--NLRKWI---------GHPRFELIRHDVTEPLL-- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~~~--~~~~~~---------~~~~~~~~~~d~~~~~~-- 95 (228)
.++|+|||||||||.+++++|++.+ .++|+++.|....... .+.... ...++.++.+|+++..+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 5899999999999999999999875 3899999995433211 111110 01368889999876532
Q ss_pred ---------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC----------
Q 027129 96 ---------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL---------- 155 (228)
Q Consensus 96 ---------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~---------- 155 (228)
.++|+|||+|+... ....+......|+.++.++++++++.+. +|+|+||.++|+...
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhh
Confidence 36999999998653 2234455556899999999999998877 899999999996421
Q ss_pred --CCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHH
Q 027129 156 --VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQA 226 (228)
Q Consensus 156 --~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~ 226 (228)
...+.|..+....+..+.+.|+.+|+.+|.+++.+.+. |++++++||+.|||+..... ...++..++..+
T Consensus 1128 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1128 AGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred ccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 11233332221123334467999999999999987664 99999999999999975542 234666666543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=143.21 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=118.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+|+++||||+|+||++++++|++.| ++|++++|+.....+.........++.++++|+++... ..+|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 5799999999999999999999999 99999998533222211111111268889999998532 2489
Q ss_pred EEEEccCCCCccccc-----CCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK-----YNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~-----~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++||++|........ ++.+..+++|+.++..+++ .+++.+. +||++||...+. +
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~----------------~ 144 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR----------------G 144 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------------C
Confidence 999999875432211 2345778999999998777 4455554 899999975432 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +++++++++|+.+.++.
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 188 (257)
T PRK07024 145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM 188 (257)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence 112356999999999999888643 58999999999998874
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.9e-19 Score=139.32 Aligned_cols=164 Identities=19% Similarity=0.143 Sum_probs=123.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---c-C-CCceEEEeccCCCccc-----------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-G-HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~-~~~~~~~~~d~~~~~~----------- 95 (228)
+|+++||||+|+||++++++|+++| ++|+++.|......+..... . . ...+.++.+|+.+...
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 99999887443333322221 1 1 2367889999988632
Q ss_pred -CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH-----HcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|+|||++|....... .++....++.|+.++.++++++. +.+. ++|++||...+..
T Consensus 85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 153 (249)
T PRK12827 85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG----------- 153 (249)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC-----------
Confidence 368999999997653222 12345678999999999999887 3444 8999999866532
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
..+...|+.+|...+.+++.++.+ .+++++++||+.++++...
T Consensus 154 -----~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~ 199 (249)
T PRK12827 154 -----NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMAD 199 (249)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccc
Confidence 123356999999999999988765 3899999999999998644
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=137.22 Aligned_cols=175 Identities=24% Similarity=0.339 Sum_probs=144.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi 102 (228)
+|+|||||++|.+|+++.+.+...+. .+.+.... -++|+++. ...++..||
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s--------------------kd~DLt~~a~t~~lF~~ekPthVI 60 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS--------------------KDADLTNLADTRALFESEKPTHVI 60 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc--------------------ccccccchHHHHHHHhccCCceee
Confidence 58999999999999999999998872 33333322 12333332 124799999
Q ss_pred EccCCCCccccc-CCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 103 HLACPASPIFYK-YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 103 ~~a~~~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
|+|+-...-..+ ..+..+++.|+..--|++..|.+.|+ |+++..|+++|++....|++|...+...|....-.|+.+|
T Consensus 61 hlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAK 140 (315)
T KOG1431|consen 61 HLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAK 140 (315)
T ss_pred ehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHH
Confidence 999876554433 44567889999999999999999998 8999999999999999999999888777777777999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHH
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQA 226 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~ 226 (228)
.++.-..+.|+.++|-..+.+-|.++|||.++.. ++..+|.+|++.
T Consensus 141 r~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~ 188 (315)
T KOG1431|consen 141 RMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRF 188 (315)
T ss_pred HHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHH
Confidence 9999999999999999999999999999999875 478999999875
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=141.23 Aligned_cols=165 Identities=15% Similarity=0.033 Sum_probs=123.1
Q ss_pred hhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------
Q 027129 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------- 95 (228)
++...+|+++||||+|+||++++++|+++| ++|++++|...+..+..... ...+.++++|+++...
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g-~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEG-WQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 344558999999999999999999999999 99999988433222211111 2357788999998532
Q ss_pred -CCccEEEEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||...... ..++++..+++|+.++.++++++.. .+.++|++||...+..
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~----------- 150 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS----------- 150 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC-----------
Confidence 25899999999754321 1123457889999999999999863 2338999999865421
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+++.++.++ ++++++++|+.+.++.
T Consensus 151 -----~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~ 193 (255)
T PRK05717 151 -----EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARD 193 (255)
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCc
Confidence 1122469999999999999998876 5899999999998864
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=140.29 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=122.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++++|+++... .+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999 9999999854322222222211 2357788899988532 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||++|........ +..++.+++|+.++.++++++.+. +. +||++||...+.
T Consensus 88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---------------- 151 (255)
T PRK07523 88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL---------------- 151 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc----------------
Confidence 89999999876433222 223566789999999999987643 44 899999975431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+++.++.+ +|+++++++|+.+.++..
T Consensus 152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~ 197 (255)
T PRK07523 152 ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLN 197 (255)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchh
Confidence 2223467999999999999998863 589999999999998853
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=142.23 Aligned_cols=162 Identities=17% Similarity=0.082 Sum_probs=119.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc-----------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~-----------~~ 97 (228)
+++++||||+|+||+++++.|+++| ++|++++|+.....+...... ....+.++.+|+++... .+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 6789999999999999999999999 999999985433222211111 12468888999988642 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|........ ++.++.++.|+.++.++++.+ ++.+. +||++||...+.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~---------------- 145 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV---------------- 145 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC----------------
Confidence 89999999875543222 234566789999988888874 55555 899999974431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHH---HhCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~---~~~i~~~ilRp~~i~G~~ 210 (228)
...+.+.|+.+|...+.+++.++. .++++++++|||.++++.
T Consensus 146 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~ 190 (280)
T PRK06914 146 GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNI 190 (280)
T ss_pred CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccch
Confidence 112335699999999999998873 459999999999998874
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=140.73 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=120.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+|+++||||+|+||++++++|+++| ++|++++|+..... ...... ...+.+++.|+++... .++|
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERG-DRVVATARDTATLA-DLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHH-HHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6799999999999999999999999 99999999433211 111111 2357788899987532 2689
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+|||+||........ +++.+.+++|+.++..+++.+ ++.+. ++|++||...+.. .
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~----------------~ 143 (275)
T PRK08263 80 IVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISA----------------F 143 (275)
T ss_pred EEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCC----------------C
Confidence 999999976543222 345677899999988887765 45555 8999999866532 1
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
...+.|+.+|+..+.+.+.++.+ +|++++++||+.+..+..
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~ 187 (275)
T PRK08263 144 PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWA 187 (275)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCcc
Confidence 22356999999999999888765 689999999998876543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=141.20 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=117.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|++.| ++|++++|+. +....... ..+.++.+|+++... .++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~----~~l~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~i 75 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGAARRV----DKMEDLAS-LGVHPLSLDVTDEASIKAAVDTIIAEEGRI 75 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHh-CCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999 9999999843 33332222 347888999988632 268
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHH----HHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l----~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++.+..+++|+.++..+ +..+++.+. ++|++||...+. +
T Consensus 76 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~ 139 (273)
T PRK06182 76 DVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------------Y 139 (273)
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------------C
Confidence 999999997543222 233467788999885444 445666665 899999975321 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 140 ~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 183 (273)
T PRK06182 140 TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEW 183 (273)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCccccc
Confidence 112246999999999998877643 58999999999998874
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=141.23 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=117.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~~~ 98 (228)
+++++||||+|+||++++++|.+.| ++|++++|+.. ....+.. ..++++.+|+++... .++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r~~~----~~~~l~~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG-WRVFATCRKEE----DVAALEA-EGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHH----HHHHHHH-CCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 5799999999999999999999999 99999999432 2222222 357888999988531 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHH----HHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~----~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++.+..+++|+.+ +..++..+++.+. +||++||...+. +
T Consensus 78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~ 141 (277)
T PRK05993 78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV----------------P 141 (277)
T ss_pred cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------------C
Confidence 9999999876543322 2234678899998 5556666777665 899999975432 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..+.+.|+.+|...+.+.+.++.+ +|+++++++||.+-.+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 142 MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 233467999999999999888643 5899999999988765
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=144.35 Aligned_cols=173 Identities=16% Similarity=0.119 Sum_probs=122.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|++.| ++|+++.|+..+..+....+ ..+.++++|+++... .++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG-AHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999 99999999533222222221 247888999998632 369
Q ss_pred cEEEEccCCCCccc--ccCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|++||+||...... ..+..+..+++|+.++..+.+. +++.+. +||++||....... ...++. ....+..
T Consensus 101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~--~~~~~~--~~~~~~~ 176 (315)
T PRK06196 101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP--IRWDDP--HFTRGYD 176 (315)
T ss_pred CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC--CCcccc--CccCCCC
Confidence 99999999754321 1234567789999997666654 445543 89999997543211 111111 1112334
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+...|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 177 ~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~ 219 (315)
T PRK06196 177 KWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ 219 (315)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence 4567999999999999888765 489999999999998853
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-19 Score=140.21 Aligned_cols=164 Identities=18% Similarity=0.069 Sum_probs=119.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||++++++|+++| ++|++++|+..+.......+. ...++..+.+|+++... .+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 999999995443322222221 12467889999998642 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHH----HHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNML----GLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~----~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|........ ...+..++.|+.++..+. .++++.+. +||++||...+..
T Consensus 82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~--------------- 146 (258)
T PRK12429 82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVG--------------- 146 (258)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccC---------------
Confidence 89999999865443222 223456778888855554 44555555 8999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+.+.++.+ .+++++++||+.++++..
T Consensus 147 -~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~ 191 (258)
T PRK12429 147 -SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLV 191 (258)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhh
Confidence 223467999999999999888765 379999999999998754
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=138.63 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=119.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|.++| ++|++++|+..... ....+.++++|+++... .++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG-YRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence 36799999999999999999999999 99999999533221 12357888999988632 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++.+..+++|+.++..+++.+ ++.+. +||++||...+..
T Consensus 75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~---------------- 138 (270)
T PRK06179 75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLP---------------- 138 (270)
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCC----------------
Confidence 9999999975432222 234677899999998888874 45555 8999999765431
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++|+.+.++.
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 139 APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 112356999999999999988655 59999999999998864
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-19 Score=139.65 Aligned_cols=161 Identities=20% Similarity=0.106 Sum_probs=118.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCcc------------cCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LIE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------~~~ 97 (228)
+++++||||+|+||++++++|+++| ++|++++|+..... ...... ...++.++++|+.+.. ..+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAGAE-AAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 99999999533221 121111 1246888999999864 235
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+++........ .+.+..++.|+.++..+++.+ ++.+. ++|++||...+...
T Consensus 79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~-------------- 144 (255)
T TIGR01963 79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS-------------- 144 (255)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC--------------
Confidence 89999999875432221 223456778999988777766 45555 89999997654321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
...+.|+.+|...+.+++.++.+ .+++++++||+.++++.
T Consensus 145 --~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~ 187 (255)
T TIGR01963 145 --PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPL 187 (255)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHH
Confidence 12256999999999999888765 38999999999999874
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=139.49 Aligned_cols=160 Identities=16% Similarity=0.076 Sum_probs=116.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.. ..+....+.. ...+.++.+|+++... .+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 99999998521 1111122211 2356778899988531 36
Q ss_pred ccEEEEccCCCCc-c----cccCCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||.... . ....+.+..++.|+.++..+++ .+++.+. +||++||...++.
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------- 150 (260)
T PRK12823 85 IDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI-------------- 150 (260)
T ss_pred CeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC--------------
Confidence 8999999985321 1 1123345667888887775554 4445555 8999999876531
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|...+.+.+.++.++ ++++++++|+.++++.
T Consensus 151 ----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 192 (260)
T PRK12823 151 ----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPP 192 (260)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcc
Confidence 11359999999999999998775 8999999999999973
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=138.00 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=120.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+++++||||+|+||++++++|++.| ++|++++|+..+..+....+.....+.++.+|+.+... .++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999 99999999643322222222112357889999988632 268
Q ss_pred cEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||++|...... ..++++..++.|+.++..+.+.+.. .+. +||++||...+.
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 146 (251)
T PRK07231 83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------------- 146 (251)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC----------------
Confidence 99999998643221 1233456788999988777776543 444 899999987653
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+...|+.+|...+.+++.++.++ +++++.++|+.+.++.
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~ 191 (251)
T PRK07231 147 PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGL 191 (251)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCc
Confidence 22334569999999999999987653 8999999999987654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=138.61 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=121.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|++.| ++|++++|...........+.. ...+..+..|+++... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 9999999953322221122111 2356778899998642 26
Q ss_pred ccEEEEccCCCCcc-------cccCCchhhHHhhHHHHHHHHHHHHHc----C-CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
+|+|||+||..... ...+..++.++.|+.++.++++++... + .+||++||...|.
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 150 (250)
T PRK07774 84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------- 150 (250)
T ss_pred CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-------------
Confidence 89999999975321 111334567889999999998887643 2 3899999987653
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+.+.|+.+|...+.+++.++.++ ++++++++||.+..+...
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~ 194 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATR 194 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccc
Confidence 12469999999999999998764 799999999999877643
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=138.12 Aligned_cols=164 Identities=14% Similarity=0.017 Sum_probs=121.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|++.| ++|++++|......+.. ..+. ...++.++.+|+++... .+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAG-FDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 99999988533222211 1111 12368889999998532 36
Q ss_pred ccEEEEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHHHHc-----C-----C-eEEEEccceeccCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV-----G-----A-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-----~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
+|+|||++|...... ..+.++..++.|+.++.++++++... + . +||++||...+.
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 152 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM-------- 152 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--------
Confidence 899999998754321 11334567899999999998876432 1 3 699999976542
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...|.+++.++.+ +++++++++|+.++++...
T Consensus 153 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~ 199 (256)
T PRK12745 153 --------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTA 199 (256)
T ss_pred --------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccc
Confidence 1123356999999999999998865 5899999999999987543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=138.41 Aligned_cols=162 Identities=20% Similarity=0.130 Sum_probs=120.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+++++||||+|+||++++++|++.| ++|++++|+.....+....... ...+.++.+|+.+... .++
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999 9999998854322221111111 2458889999987532 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||++|........ ...++.+++|+.++.++++++. +.+. ++|++||...+...
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~--------------- 146 (250)
T TIGR03206 82 DVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS--------------- 146 (250)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC---------------
Confidence 9999999864322211 2234568999999999888764 4454 89999998776432
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|.+.+.+.+.++.+. ++++++++|+.++++.
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~ 189 (250)
T TIGR03206 147 -SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTAL 189 (250)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchh
Confidence 123569999999999999988764 8999999999998874
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=135.90 Aligned_cols=167 Identities=17% Similarity=0.074 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||.+++++|++.| ++|++++|+..+.......+.. ..++.++.+|+++... .+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46999999999999999999999999 9999999853322111111111 2357789999998532 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc-----CC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~-----~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|+|||+||........ +.+++.++.|+.++.++++++... +. +||++||...+.....
T Consensus 90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~----------- 158 (259)
T PRK08213 90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP----------- 158 (259)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc-----------
Confidence 89999999865332222 233567789999999999987554 44 8999999765432210
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
...+...|+.+|+..+.+++.+++++ ++++++++|+.+-.+.
T Consensus 159 -~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~ 203 (259)
T PRK08213 159 -EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKM 203 (259)
T ss_pred -cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcc
Confidence 11233679999999999999998764 7999999999886653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=136.69 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=119.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.++++++||||+|+||++++++|+++| ++|+++.|+.....+....... ...+.++.+|+++... .
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALG 86 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999999 9999998843322211111111 2357788899998632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ +.+...++.|+.++.++++.+. +.+. +||++||...|...
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------------- 153 (274)
T PRK07775 87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------------- 153 (274)
T ss_pred CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-------------
Confidence 689999999875432222 2334567899999999988764 3333 79999998766421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
...+.|+.+|...|.+++.++.++ |++++++|||.+.++
T Consensus 154 ---~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~ 195 (274)
T PRK07775 154 ---PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTG 195 (274)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCc
Confidence 123569999999999999998764 899999999987554
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=137.99 Aligned_cols=164 Identities=23% Similarity=0.194 Sum_probs=119.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++++++||||+|+||++++++|+++| ++|++++|+..... .........++.++.+|+++... .+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAG-ARVHVCDVSEAALA-ATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 347899999999999999999999999 99999999543222 22222222256888999988642 36
Q ss_pred ccEEEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHHH----HcCC--eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+|+|||++|...+. ...++..+.++.|+.++..+++++. +.+. +|+++||.....
T Consensus 87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~-------------- 152 (264)
T PRK12829 87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL-------------- 152 (264)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc--------------
Confidence 89999999875221 1123346778999999999888763 3333 577777754321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.......|+.+|...|.+++.++.+. +++++++||+.++|+..
T Consensus 153 --~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~ 198 (264)
T PRK12829 153 --GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRM 198 (264)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHH
Confidence 11122469999999999999987653 89999999999999864
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=139.77 Aligned_cols=163 Identities=16% Similarity=0.123 Sum_probs=122.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
+|+++||||+|+||++++++|++.| ++|++..+..... .+....... ..++.++.+|+++... .
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREG-ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999 9998877643221 111211111 2357788899988532 2
Q ss_pred CccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||...... ..++++..+++|+.++..+++++... +.+||++||...|...
T Consensus 134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 199 (300)
T PRK06128 134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS-------------- 199 (300)
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC--------------
Confidence 6999999998643221 22345678899999999999988753 3389999998876421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...+.+++.++.+ +|+++++++||.++++..
T Consensus 200 --~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~ 243 (300)
T PRK06128 200 --PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQ 243 (300)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCc
Confidence 12346999999999999998876 489999999999999854
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=136.05 Aligned_cols=163 Identities=16% Similarity=0.111 Sum_probs=119.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcC-CCceEEEeccCCCccc--------------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-------------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-------------- 95 (228)
+++++||||+|+||++++++|++.| ++|.++ .|...+..+....+.. ...+.++.+|+++...
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G-~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 84 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG-ALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI 84 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999 888775 4532211111122211 2357889999998632
Q ss_pred ----CCccEEEEccCCCCcccccCC----chhhHHhhHHHHHHHHHHHHHc--CC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 ----IEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~--~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||........+. ....+++|+.++.++++++.+. .. ++|++||...+..
T Consensus 85 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~----------- 153 (254)
T PRK12746 85 RVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLG----------- 153 (254)
T ss_pred ccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCC-----------
Confidence 258999999987543222221 2456789999999999988753 23 8999999876532
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+.+.++.+ +++++++++|+.++++-.
T Consensus 154 -----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~ 198 (254)
T PRK12746 154 -----FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDIN 198 (254)
T ss_pred -----CCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcch
Confidence 223356999999999999888765 479999999999988753
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=137.24 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=120.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+++++||||+|+||++++++|+++| ++|++++|+........... ...+.++.+|+++... .++|
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999 99999998543222211111 2357888999987632 2689
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc------CCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~------~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++||++|....... .++++..++.|+.++..+++++... +.+||++||..... +
T Consensus 83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 146 (257)
T PRK07067 83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR----------------G 146 (257)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC----------------C
Confidence 99999987543221 2345677899999999999987542 23799999964221 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...+.+++.++.+ +++++++++|+.++++.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~ 190 (257)
T PRK07067 147 EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPM 190 (257)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchh
Confidence 123467999999999999988774 58999999999999975
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=140.46 Aligned_cols=176 Identities=15% Similarity=0.074 Sum_probs=121.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
.+|+++||||+|+||++++++|++.| ++|+++.|+..+..+....+. ....+.++++|+.+...
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKG-AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 47899999999999999999999999 999999985433222222221 12467888999988632
Q ss_pred CCccEEEEccCCCCccc--ccCCchhhHHhhHHH----HHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~--~~~~~~~~~~~n~~~----~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+||...+.. ..++.+..+++|+.+ +..++..+++.+. +||++||...+... ....++..+ ..
T Consensus 94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~-~~~~~~~~~--~~ 170 (306)
T PRK06197 94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRA-AIHFDDLQW--ER 170 (306)
T ss_pred CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccC-CCCccccCc--cc
Confidence 26999999999754332 224456778999999 4555666666554 99999998643211 111111111 12
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEe--eeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIA--RIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~il--Rp~~i~G~~ 210 (228)
+..+...|+.||...+.+.+.++.++ +++++++ .||.+..+.
T Consensus 171 ~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 171 RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 33455789999999999999988764 6666554 699887654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=136.16 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=118.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+++++||||+|+||++++++|++.| ++|++++|+.....+...+. ...+.+++.|+++... .++|
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG-ARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999999 99999988432211111111 2356778888887531 3689
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH---cCCeEEEEccc-eeccCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTS-EVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~---~~~r~i~~Ss~-~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++||+||....... .++++..++.|+.++..+++++.. .+.++|++||. +.|+. .
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~-----------------~ 145 (249)
T PRK06500 83 AVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM-----------------P 145 (249)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-----------------C
Confidence 99999987543221 134567889999999999999874 23377777775 33431 1
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..+.|+.+|...|.+++.++.+. ++++++++|+.++++.
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~ 187 (249)
T PRK06500 146 NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPL 187 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHH
Confidence 23569999999999998887654 8999999999999874
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-18 Score=136.51 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=123.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||.+++++|++.| ++|+++.|......+....... ..++.++.+|+++...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 336899999999999999999999999 9999998854332222222211 2357788999987532
Q ss_pred CCccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|+|||+||....... .++....+++|+.++.++++++... +.+||++||...|...
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~------------- 189 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN------------- 189 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC-------------
Confidence 268999999987533211 1234567899999999999988653 2389999998776421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.++.++ |++++.++||.++.+.
T Consensus 190 ---~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~ 232 (290)
T PRK06701 190 ---ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPL 232 (290)
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcc
Confidence 112459999999999999998774 8999999999998874
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=139.02 Aligned_cols=161 Identities=11% Similarity=0.042 Sum_probs=117.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++++|||||+|+||++++++|+++| ++|++++|......+....+.. ..++.++.+|+++... .+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 9999999854332222222221 2357789999988632 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHH----HHHcC-------CeEEEEccceeccCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGL----AKRVG-------ARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~----~~~~~-------~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
+|+|||+||........ .++...+++|+.++.+++++ +.+.+ .++|++||...+...
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 155 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-------- 155 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence 89999999986543222 23455688999999997776 33332 279999998665321
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYG 208 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G 208 (228)
...+.|+.+|...+.+++.++.++ ++++..+.|+.+..
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t 198 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPT 198 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccC
Confidence 223569999999999999988764 47788889988744
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-18 Score=151.38 Aligned_cols=148 Identities=26% Similarity=0.350 Sum_probs=111.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----CCccEEEEccCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----IEVDQIYHLACPA 108 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~D~vi~~a~~~ 108 (228)
|+|+||||+||||++++++|++.| ++|++++|..... ....++++++|+++... .++|+|||+|+..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 689999999999999999999999 9999999843211 12367889999988642 4799999999753
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
.. ...+.|+.++.+++++|++.++|+|++||. ||... .|. .+|.++.
T Consensus 72 ~~--------~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~~-------------------~~~----~aE~ll~ 118 (699)
T PRK12320 72 TS--------APGGVGITGLAHVANAAARAGARLLFVSQA--AGRPE-------------------LYR----QAETLVS 118 (699)
T ss_pred cc--------chhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCCc-------------------ccc----HHHHHHH
Confidence 21 112579999999999999999999999986 33210 021 2565543
Q ss_pred HHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.++++++++|++++||++......++++.++...
T Consensus 119 ----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~ 152 (699)
T PRK12320 119 ----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSK 152 (699)
T ss_pred ----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHH
Confidence 3468999999999999976654346777777544
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=138.61 Aligned_cols=161 Identities=20% Similarity=0.141 Sum_probs=119.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|++.| ++|++++|......+....+....++.++++|+++... .++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999 99999988533222222222122367889999998632 269
Q ss_pred cEEEEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEcccee-ccCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLVHPQDESYWGN 166 (228)
Q Consensus 99 D~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~ 166 (228)
|++||+||...... ..++++..+++|+.++.++++++.. .+. ++|++||... ++.
T Consensus 96 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------- 162 (280)
T PLN02253 96 DIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG------------- 162 (280)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC-------------
Confidence 99999998753211 1233567889999999998887653 233 7899888643 221
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
.....|+.+|...|.+.+.++.++ ++++++++|+.+..+
T Consensus 163 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~ 204 (280)
T PLN02253 163 ----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTA 204 (280)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccc
Confidence 112459999999999999998764 899999999999775
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=134.71 Aligned_cols=163 Identities=16% Similarity=0.047 Sum_probs=117.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
++++++||||+|+||++++++|++.| ++|+++ .|......+....... ...+.++.+|+++... .
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEG-YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999 888764 5543222221112111 2357888899988642 2
Q ss_pred CccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||++|........+ .....+++|+.++..+++++.+ .+. +||++||...+.
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------- 146 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR--------------- 146 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence 5899999998654332222 2234578999999888887754 334 899999975432
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+..+...|+.+|...+.+++.++.+ .++++++++|+.+..+.
T Consensus 147 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~ 191 (250)
T PRK08063 147 -YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDA 191 (250)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCch
Confidence 2223457999999999999998765 48999999999998765
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=138.15 Aligned_cols=164 Identities=19% Similarity=0.107 Sum_probs=120.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~------------ 95 (228)
.+|+++||||+|+||++++++|+++| ++|+++.|+..........+.. ..++.++.+|+++...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 9999999854322222222111 2357788899987632
Q ss_pred CCccEEEEccCCCCcc--c---ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||++|..... . ..++....+++|+.++..+++++.+ .+. +||++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------- 151 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------- 151 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC-------------
Confidence 2689999999854221 1 1122456678899999999886643 233 899999987642
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+..+.+.|+.+|...|.+++.++.++ +++++++||+.+.++..
T Consensus 152 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~ 197 (276)
T PRK05875 152 ---THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLV 197 (276)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccc
Confidence 22234679999999999999988764 69999999999887643
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=133.82 Aligned_cols=165 Identities=16% Similarity=0.103 Sum_probs=121.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|+++.|+............ ...++.++.+|+.+... .+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35899999999999999999999999 999999995433221111111 12467888899987632 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|........ +.....++.|+.+..++++++. +.+. +||++||.....
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~---------------- 146 (246)
T PRK05653 83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT---------------- 146 (246)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc----------------
Confidence 79999999875432211 2235668899999999888774 4555 899999975431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++++ .+++++++||+.++++...
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~ 193 (246)
T PRK05653 147 GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE 193 (246)
T ss_pred CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh
Confidence 1223356999999999999888765 4899999999999998654
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=135.40 Aligned_cols=160 Identities=21% Similarity=0.101 Sum_probs=118.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------------cCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~ 98 (228)
||+++||||+|+||++++++|+++| ++|++++|+.....+... ......+.++++|+++.. ..++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLAALAA-ELGAGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH-HhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5889999999999999999999999 999999985332222111 112346888999998753 2357
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEcccee-ccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV-YGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||+||........ ++.+..+++|+.++..+++++. +.+. +||++||... ++.
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------- 143 (260)
T PRK08267 79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ--------------- 143 (260)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC---------------
Confidence 9999999976432222 2346778999999999988764 3333 8999999743 321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.++.+ .++++++++|+.+..+.
T Consensus 144 --~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~ 186 (260)
T PRK08267 144 --PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAM 186 (260)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcc
Confidence 12356999999999999998765 47999999999987653
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=134.45 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|+++.|+.. .+....... ...+..+..|+++... .+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999 99999998431 111111111 2357888999998632 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||........ ++++..++.|+.++..+++++.+ .+ . ++|++||...|...
T Consensus 81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------- 147 (248)
T TIGR01832 81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG------------- 147 (248)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC-------------
Confidence 99999999875432222 23456788999999999887643 33 3 89999998766421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.++.++ |+++++++||.+..+.
T Consensus 148 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 190 (248)
T TIGR01832 148 ---IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNN 190 (248)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcc
Confidence 122469999999999999998874 8999999999998774
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=137.78 Aligned_cols=164 Identities=20% Similarity=0.164 Sum_probs=122.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-CchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|++.| ++|+++.|.... ..+.+..... ...+.++.+|+++...
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G-~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999 999988764322 1222222211 2356788899998632
Q ss_pred CCccEEEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+||..... ...+++++.+++|+.++..+++++... +.+||++||...+..
T Consensus 127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~-------------- 192 (294)
T PRK07985 127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP-------------- 192 (294)
T ss_pred CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC--------------
Confidence 3689999999864211 112345678899999999999887642 348999999876632
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 193 --~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~ 237 (294)
T PRK07985 193 --SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQ 237 (294)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccc
Confidence 112246999999999999999876 489999999999999853
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=134.18 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=116.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
|+++||||+|+||.+++++|++.| ++|++++|+..+... ..... ..++.++.+|+.+... .++|+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 77 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQE-LKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHH-HHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 689999999999999999999999 999999994332111 11111 2357888999987632 26999
Q ss_pred EEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|||++|..... ...++..+.++.|+.++..+++.+ ++.+. ++|++||...+. +.
T Consensus 78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 141 (248)
T PRK10538 78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY 141 (248)
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC----------------CC
Confidence 99999864311 122344667899999976666654 44555 899999975431 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
...+.|+.+|...+.+.+.++.+. ++++++++||.+.|+.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~ 184 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE 184 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence 334579999999999999988764 7999999999998664
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-18 Score=136.04 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=119.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|++.| ++|++++|+.....+....+.. ..++.++..|+++... .+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999999999 9999998854332222222211 2357788999988632 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||........ ++.+..+++|+.++..+++++. +.+ .+||++||...+.
T Consensus 84 id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~--------------- 148 (275)
T PRK05876 84 VDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV--------------- 148 (275)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc---------------
Confidence 89999999975433222 2345667999999999988764 343 3899999986652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.+ +|+++++++|+.+.++.
T Consensus 149 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 193 (275)
T PRK05876 149 -PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNL 193 (275)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccccc
Confidence 2233467999999877777776654 38999999999998864
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-18 Score=133.35 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=120.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~v 101 (228)
.++++++||||+|+||+++++.|++.| ++|++++|+.. ....+.......++.+|+++... .++|+|
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRG-ARVVAAARNAA----ALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 346899999999999999999999999 99999998432 22222222235677888887532 258999
Q ss_pred EEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||++|....... ..+.++.++.|+.++..+++++.+ .+ .+||++||...+.. ..
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~ 145 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG----------------LP 145 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC----------------CC
Confidence 999987543221 123456678999999999987754 23 38999999865532 12
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....|+.+|...+.+++.++.+ .+++++.++|+.++++..
T Consensus 146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~ 188 (245)
T PRK07060 146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMA 188 (245)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchh
Confidence 2356999999999999998865 389999999999998863
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=135.03 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=117.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|++.| ++|+++.|+..+..+....+. ....+.++.+|+++...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999 999999885433222222221 12346677899988632
Q ss_pred CCccEEEEccCCCCcc-------cccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|+|||+|+..... ...+.....++.|+.++..+++++ ++.+. +||++||...+..... ...+.
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~- 159 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEG- 159 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhccc-
Confidence 2489999999753211 111223556778887776665544 44455 8999999765432211 11121
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ +++++++++|+.++++
T Consensus 160 ----~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~ 204 (256)
T PRK09186 160 ----TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDN 204 (256)
T ss_pred ----cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCC
Confidence 12222346999999999999888775 4899999999988765
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-18 Score=135.14 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=121.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++++++||||+|+||++++++|++.| ++|++++|+.... +....+. ...++.++..|+++... .
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG-AIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC-CcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999 9999999865433 2222221 12357889999987632 2
Q ss_pred CccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++|+|||++|........ ++.+..++.|+.++..+.+.+.+ .+.+||++||...+. +
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT----------------G 146 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------------C
Confidence 689999999864322111 33456788999999998887653 223799999976542 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+++.++.+ ++++++.++||.++++.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~ 190 (258)
T PRK08628 147 QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPL 190 (258)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHH
Confidence 123357999999999999998764 48999999999999975
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=143.56 Aligned_cols=185 Identities=24% Similarity=0.266 Sum_probs=135.5
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCc--hhhhhhc---------C-----CCceEEE
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKWI---------G-----HPRFELI 86 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~--~~~~~~~---------~-----~~~~~~~ 86 (228)
...++. +|+|+|||||||+|+.++++|++.- ..+++++.|...+.. +.++.+. + ..++..+
T Consensus 6 i~~f~~-~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi 84 (467)
T KOG1221|consen 6 IVQFYK-NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPI 84 (467)
T ss_pred HHHHhC-CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceec
Confidence 566666 8999999999999999999999874 279999999665542 1222111 1 1467788
Q ss_pred eccCCCccc-----------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccC
Q 027129 87 RHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGD 153 (228)
Q Consensus 87 ~~d~~~~~~-----------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~ 153 (228)
.+|.++..+ .++|+|||+||- ..+.+.....+.+|..++.++++.|++... -++++||+.+.
T Consensus 85 ~GDi~~~~LGis~~D~~~l~~eV~ivih~AAt---vrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n-- 159 (467)
T KOG1221|consen 85 AGDISEPDLGISESDLRTLADEVNIVIHSAAT---VRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN-- 159 (467)
T ss_pred cccccCcccCCChHHHHHHHhcCCEEEEeeee---eccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee--
Confidence 899887643 268999999984 344455667789999999999999999876 59999999764
Q ss_pred CCCCCCCCCCCCCCC--------------------------CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeecccc
Q 027129 154 PLVHPQDESYWGNVN--------------------------PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~--------------------------~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~ 207 (228)
.....+.|..+.... .......|.-+|+++|+.+.++++ +++++|+||+.|.
T Consensus 160 ~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~ 237 (467)
T KOG1221|consen 160 CNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIIT 237 (467)
T ss_pred cccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCcee
Confidence 222223332211100 011235699999999999998765 6999999999999
Q ss_pred CCCCCCCCcc
Q 027129 208 GPRMNIDDGR 217 (228)
Q Consensus 208 G~~~~~~~~~ 217 (228)
++-..+..++
T Consensus 238 st~~EP~pGW 247 (467)
T KOG1221|consen 238 STYKEPFPGW 247 (467)
T ss_pred ccccCCCCCc
Confidence 9988876544
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=133.32 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=117.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc---------CCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL---------IEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~---------~~~D~v 101 (228)
|++++||||+|+||++++++|++.| ++|++++|+. +....+.. ...+.++++|+++... ..+|.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQG-WQVIACGRNQ----SVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCC-CEEEEEECCH----HHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 5789999999999999999999999 9999999943 22222211 2357788999988642 247999
Q ss_pred EEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 102 i~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
||+||...... ..++.++.+++|+.++.++++++... +.++|++||..... +.....
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~ 139 (240)
T PRK06101 76 IFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL----------------ALPRAE 139 (240)
T ss_pred EEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc----------------CCCCCc
Confidence 99998543211 11223567899999999999988753 34799998864221 112234
Q ss_pred hHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.|+.+|...+.+.+.++.+ +++++++++|+.++++..
T Consensus 140 ~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~ 179 (240)
T PRK06101 140 AYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLT 179 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCc
Confidence 6999999999999988743 589999999999998753
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-18 Score=134.11 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=118.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
++++++||||+|+||++++++|++.| ++|+++.|+.....+.... +.. ...+.++++|+++... .
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999 9999998854322222211 111 2357788999988632 2
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
++|+|||+||.... ...++...+++|+.++.++++++.+. +.++|++||........ .+ +....
T Consensus 84 ~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~-------~~~~~ 150 (248)
T PRK07806 84 GLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK-------TMPEY 150 (248)
T ss_pred CCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc-------CCccc
Confidence 58999999985421 22345567789999999999998864 23899999964321110 01 11114
Q ss_pred ChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+.|+.+|..+|.+++.++.+ .++++++++|+.+-++
T Consensus 151 ~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~ 189 (248)
T PRK07806 151 EPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGT 189 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCc
Confidence 57999999999999998765 4899999999887665
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-18 Score=134.22 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=117.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|.++| ++|+++.|+.... ....+.++++|+.+... .++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 78 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAG-ARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERLGGV 78 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCC-CEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 9999999953321 12357888999988642 368
Q ss_pred cEEEEccCCCCcc------cccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 99 D~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
|+|||+||..... ...++++..+++|+.++..+.+++ ++.+. ++|++||...+..
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~-------------- 144 (260)
T PRK06523 79 DILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP-------------- 144 (260)
T ss_pred CEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC--------------
Confidence 9999999864221 112345667889999997776654 44444 8999999865421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.......|+.+|...+.+.+.++.++ |+++++++||.+.++.
T Consensus 145 -~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~ 189 (260)
T PRK06523 145 -LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEA 189 (260)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcc
Confidence 11134579999999999999988653 8999999999998875
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=133.64 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=119.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
+||+++||||+|+||+.++++|+++| ++|++++|+.....+....... ..++.++.+|+++... .+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 8999999954322221111111 2467889999998642 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||++|........ ++.+..++.|+.++..+++.+ ++.+. ++|++||...+..
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 148 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNA--------------- 148 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcC---------------
Confidence 89999999875432211 234566788999888877665 34444 8999999876632
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ .+++++++||+.+-.+.
T Consensus 149 -~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~ 192 (241)
T PRK07454 149 -FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPL 192 (241)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCc
Confidence 223356999999999999887654 48999999999987763
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=134.57 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=120.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.++++++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++... .
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999 9999999953322222222111 2357888999988642 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH-----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~-----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|+|||+||........ ++....+++|+.++.++.+++.. .+. ++|++||...+.
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 152 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-------------- 152 (263)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC--------------
Confidence 689999999864432222 33567789999999999998863 333 899999974321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~ 209 (228)
+..+.+.|+.+|...+.+++.++.+. +++++.++|+.+..+
T Consensus 153 --~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~ 195 (263)
T PRK07814 153 --AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTS 195 (263)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCc
Confidence 22234569999999999999988764 578999999988655
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-18 Score=132.36 Aligned_cols=157 Identities=19% Similarity=0.135 Sum_probs=119.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~v 101 (228)
.+++++||||+|+||++++++|++.| + +|++++|+..+..+ ....+.++.+|+.+... ..+|+|
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G-~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARG-AAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-cccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 36899999999999999999999999 7 99999985432221 22467888999987532 258999
Q ss_pred EEccCCCC-cccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPAS-PIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~-~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||++|... .... .++....++.|+.++..+++++.+ .+. +||++||...+. +..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~----------------~~~ 141 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV----------------NFP 141 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc----------------CCC
Confidence 99998732 2211 133456778999999999988653 344 799999986653 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+...|+.+|...+.+.+.++.+. +++++++||+.+.++.
T Consensus 142 ~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 142 NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 34579999999999999887664 8999999999997764
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=133.42 Aligned_cols=165 Identities=17% Similarity=0.049 Sum_probs=121.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+++++||||+|+||++++++|++.| ++|++++|+..+..+....+.. ..++..+.+|+++... .
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 347899999999999999999999999 9999999854332222222221 2356778899988632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||++|....... .++++..++.|+.++..+.+++.+ .+. +||++||.....
T Consensus 86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 150 (254)
T PRK08085 86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL--------------- 150 (254)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc---------------
Confidence 58999999986532211 233456789999998888887653 333 899999974321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+++.++.+ +|+++++++||.+..+..
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~ 196 (254)
T PRK08085 151 -GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMT 196 (254)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcch
Confidence 1223356999999999999999876 489999999999988743
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-17 Score=130.45 Aligned_cols=164 Identities=18% Similarity=0.091 Sum_probs=121.1
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------ 95 (228)
+...+++++||||+|+||.+++++|++.| ++|+++.|+... ...........+..+..|+++...
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G-~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKG-ARVALLDRSEDV--AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 34457899999999999999999999999 999999985331 111111222456788899987631
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||++|........ .+.+..++.|+.++.++++++.. .+. +||++||.....
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 153 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV-------------- 153 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc--------------
Confidence 2689999999975432221 23456789999999999988754 334 899999975421
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ .+++++.++||.+..+.
T Consensus 154 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 198 (255)
T PRK06841 154 --ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTEL 198 (255)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcc
Confidence 1112356999999999999998876 48999999999997764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=132.04 Aligned_cols=152 Identities=18% Similarity=0.105 Sum_probs=117.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|++.| ++|++++|+.... ..+.++++|+++... .++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G-~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 73 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEG-SNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGRI 73 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 9999999853221 257788999988632 269
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++.+..+++|+.++..+++++.+ .+. ++|++||...+. +
T Consensus 74 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 137 (258)
T PRK06398 74 DILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA----------------V 137 (258)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------------C
Confidence 9999999975432222 23456689999999988887643 343 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|+..+.+.+.++.++ .++++.++||.+-.+
T Consensus 138 ~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~ 179 (258)
T PRK06398 138 TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTP 179 (258)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccch
Confidence 2334679999999999999998775 499999999988654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-18 Score=135.68 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=120.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++++|+++... .+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG-AKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 9999999853322222222211 2357788999987631 36
Q ss_pred ccEEEEccCCCCcccc-------------------cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccC
Q 027129 98 VDQIYHLACPASPIFY-------------------KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGD 153 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~-------------------~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~ 153 (228)
+|++||+||...+... .++++..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~- 166 (278)
T PRK08277 88 CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT- 166 (278)
T ss_pred CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC-
Confidence 9999999986432211 1234567788999888666543 44444 899999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+++.++.++ ++++++++||.+..+.
T Consensus 167 ---------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~ 211 (278)
T PRK08277 167 ---------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQ 211 (278)
T ss_pred ---------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcc
Confidence 22233569999999999999998775 7999999999998874
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=135.03 Aligned_cols=165 Identities=15% Similarity=0.081 Sum_probs=119.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+++++||||+|+||++++++|+++| ++|++++|+.....+....+.. ...+.++++|+++... .
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999999 9999999953222111111111 2356788999988632 2
Q ss_pred CccEEEEccCCCCccccc------CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||........ .+.+..+++|+.++..+++++ ++.+. ++|++||.+.+...
T Consensus 117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 185 (293)
T PRK05866 117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA----------- 185 (293)
T ss_pred CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC-----------
Confidence 689999999976443222 223457889999988887765 34554 89999997654311
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+++.++.++ ++++++++||.+-.+.
T Consensus 186 ----~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~ 229 (293)
T PRK05866 186 ----SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPM 229 (293)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcc
Confidence 1123569999999999999987654 8999999999876653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=132.48 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=118.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc---------CCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL---------IEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~---------~~~D~ 100 (228)
||+++||||+|+||.+++++|+++| ++|++++|+..+..+...... ...++.++++|+++... .++|+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 6899999999999999999999999 999999995433222222211 12468889999998632 24799
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+||++|........ ++....++.|+.++..+++++.. .+. ++|++||...... ..
T Consensus 80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~ 143 (243)
T PRK07102 80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRG----------------RA 143 (243)
T ss_pred EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCC----------------CC
Confidence 99999865432221 22346688999999999887653 344 8999999743211 11
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|...+.+.+.++.+ .|+++++++|+.++++.
T Consensus 144 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~ 185 (243)
T PRK07102 144 SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPM 185 (243)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChh
Confidence 2245999999999999988654 48999999999998873
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-17 Score=130.60 Aligned_cols=162 Identities=21% Similarity=0.157 Sum_probs=117.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------~ 96 (228)
+++++||||+|+||++++++|++.| ++|++++|+..........+. ....+.++.+|+++... .
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999 999999985432222222211 11358889999987532 3
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccce-eccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSE-VYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~-~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||........ ++++..++.|+.++..+++++. +.+ . ++|++||.. .++.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------ 148 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------ 148 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence 689999999876543222 2345667899999877776654 345 3 899999864 2321
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|++.+.+++.++.+ +|++++++|||.++++..
T Consensus 149 -----~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~ 192 (259)
T PRK12384 149 -----KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPM 192 (259)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchh
Confidence 12256999999999999888753 699999999999887653
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=131.73 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=120.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|++.| ++|++++|+. ... ....+..++.|+++... .++
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAF------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecch------hhh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 9999999853 111 12357888999987632 258
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|....... .+++...+++|+.++..+++++.. .+. +||++||..... +
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~----------------~ 141 (252)
T PRK08220 78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV----------------P 141 (252)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------------C
Confidence 999999987543221 234567789999999999887642 333 899999975431 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
..+.+.|+.+|...+.+.+.++.+ +++++++++|+.++++..
T Consensus 142 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~ 186 (252)
T PRK08220 142 RIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQ 186 (252)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhh
Confidence 233467999999999999998876 689999999999999853
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=131.67 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=127.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
+.+++++|||||++||.+++++|.++| ++|+++.|+.++..+..+++.. ...++++..|+++...
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 347899999999999999999999999 9999999954444333333332 2357889999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
..+|++|||||.+....+. ++.++.+++|+.++..+..+. .+.+. +||+++|...|
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~--------------- 147 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGL--------------- 147 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhc---------------
Confidence 2699999999987654332 334678899999988776654 44555 89999999766
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.|....+.|+.||+..-.+.+.+..+ +|+.+..+-||-+....-
T Consensus 148 -~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~ 194 (265)
T COG0300 148 -IPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF 194 (265)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc
Confidence 23344478999999999888888766 489999999998877654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=131.53 Aligned_cols=164 Identities=18% Similarity=0.126 Sum_probs=114.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
|++++||||+|+||++++++|++.| ++|+++ .|+.....+....+.. ...+..+.+|+++... .+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 79 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEG-YTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP 79 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999 998775 4422211111111111 2357788999988632 26
Q ss_pred ccEEEEccCCCCccccc-----CCchhhHHhhHHHHHHHHHHHHHc--------CCeEEEEccceeccCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK-----YNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~--------~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
+|+|||++|........ ++....++.|+.++..+++++... +.+||++||...+...
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~---------- 149 (247)
T PRK09730 80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA---------- 149 (247)
T ss_pred CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC----------
Confidence 89999999865332111 223467889999998777654332 1269999998543211
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+ .....|+.+|...+.+++.++.+ .+++++++||+.+|++..
T Consensus 150 ----~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~ 194 (247)
T PRK09730 150 ----P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMH 194 (247)
T ss_pred ----C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCccc
Confidence 1 11134999999999999888765 489999999999999854
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=132.61 Aligned_cols=162 Identities=19% Similarity=0.125 Sum_probs=117.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+++||||+|+||++++++|+++| ++|++++|+..........+.. ...+.++++|+++... .++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999 9999999854322222122211 2357788999998632 268
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++.+..+++|+.++..+++.+.+ .+ .++|++||...+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 145 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVG--------------- 145 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccC---------------
Confidence 9999999865432221 23356788999998777666543 23 38999999754321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+++.++.+ .|++++.++|+.+.++.
T Consensus 146 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 146 -NPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 112356999999999999988865 48999999999998763
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=132.12 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=116.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hcC-CCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++++||||+|+||.+++++|++.| ++|++..+.+......... +.. ...+.++.+|+++... .+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G-~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERG-YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999 8888776532221111111 111 2357788999988532 26
Q ss_pred ccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHHHc------C--CeEEEEcccee-ccCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKRV------G--ARILLTSTSEV-YGDPLVHPQDESY 163 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~------~--~r~i~~Ss~~~-y~~~~~~~~~e~~ 163 (228)
+|+|||+||....... .+++...+++|+.++.++++++.+. + .++|++||... ++..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~--------- 151 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP--------- 151 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC---------
Confidence 8999999987543211 1234577899999999988876542 1 26999999754 3311
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...+.+++.++.+. +++++++||+.++++..
T Consensus 152 -------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~ 195 (248)
T PRK06123 152 -------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIH 195 (248)
T ss_pred -------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchh
Confidence 111349999999999999988764 89999999999999854
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=131.81 Aligned_cols=163 Identities=16% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCcc--------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-------------- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~-------------- 94 (228)
++++++||||+|+||++++++|++.| ++|++++|+.....+....+.. ...+..+..|+++..
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 36899999999999999999999999 9999999965432222222211 123456667765421
Q ss_pred c-CCccEEEEccCCCCcc-c-c---cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 95 L-IEVDQIYHLACPASPI-F-Y---KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 95 ~-~~~D~vi~~a~~~~~~-~-~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
. .++|+|||+||..... . . .++..+.+++|+.++..+++++.+ .+. ++|++||....
T Consensus 84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~------------ 151 (239)
T PRK08703 84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE------------ 151 (239)
T ss_pred hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc------------
Confidence 1 3689999999864321 1 1 123445789999998888877643 343 89999986432
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh----CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~----~i~~~ilRp~~i~G~~ 210 (228)
.+......|+.+|+..+.+++.++.+. ++++++++||.|+++.
T Consensus 152 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~ 198 (239)
T PRK08703 152 ----TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQ 198 (239)
T ss_pred ----cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcc
Confidence 122233569999999999999998774 5999999999999985
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=133.52 Aligned_cols=163 Identities=14% Similarity=0.006 Sum_probs=120.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++++|+++...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999 999999995433222222222 13457888999988632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++.+..+++|+.++..+++++. +.+. +||++||...+.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 150 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK-------------- 150 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc--------------
Confidence 269999999996532211 23456678899999988888754 3343 899999985432
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|+..+.+.+.++.++ |++++.++||.+-.+.
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~ 195 (260)
T PRK07063 151 --IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQL 195 (260)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChh
Confidence 11223469999999999999998764 7999999999986653
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=131.84 Aligned_cols=162 Identities=17% Similarity=0.083 Sum_probs=120.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+++.+|+.+... .++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQTLPGVP-ADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCC-CeEEEEeCChHhHHHHHHHHh-hcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 36899999999999999999999999 999999996543333222222 2356777888887531 268
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|....... .+.+.+.++.|..++..+++++. +.+. ++|++||...++..
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 148 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG--------------- 148 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC---------------
Confidence 999999986432211 12234567899999999888764 3444 89999998766421
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.++.+ ++++++++||+.++++.
T Consensus 149 -~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~ 191 (239)
T PRK12828 149 -PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPP 191 (239)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcc
Confidence 23356999999999998887654 48999999999999974
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=132.42 Aligned_cols=161 Identities=13% Similarity=0.102 Sum_probs=119.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 98 (228)
|++++||||+|+||++++++|++.| ++|++++|+.....+....+.. ...+.++.+|+.+... .++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999 9999999853322222221111 2357788899988632 268
Q ss_pred cEEEEccCCCCcccccCC-----chhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|........+. +.+.++.|+.++.++++.+.. .+.++|++||...+..
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 143 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTG---------------- 143 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCC----------------
Confidence 999999987554322222 356689999999999998753 2238999999876532
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..+.+.|+.+|...+.+.+.++.+ .++++++++||.+..+
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~ 186 (263)
T PRK06181 144 VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATD 186 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccC
Confidence 223357999999999999887654 4899999999998765
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=133.19 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=115.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
||+++||||+|+||++++++|++.| ++|++++|+. +....... ..+.++.+|+++... .++|
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~----~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAG-YEVWATARKA----EDVEALAA-AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHH-CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 5899999999999999999999999 9999999843 22222211 246778889887522 3689
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH---cC-CeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR---VG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~---~~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+|||+||........ ++.+..+++|+.++..+++++.. .+ .++|++||...+.. ..
T Consensus 75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~ 138 (274)
T PRK05693 75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLV----------------TP 138 (274)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCC----------------CC
Confidence 999999875432221 33456789999999888887633 23 37999998754321 11
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..+.|+.+|...+.+.+.++.+ +|+++++++||.+..+
T Consensus 139 ~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 139 FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 2356999999999998887765 5999999999999765
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=134.15 Aligned_cols=162 Identities=18% Similarity=0.108 Sum_probs=118.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|+++.|+ ....+....+.. ..++..+.+|+++... .+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 37899999999999999999999999 999999985 222222222211 2357888999988632 25
Q ss_pred ccEEEEccCCCCcc-cc-c---CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-FY-K---YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-~~-~---~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||..... .. . +..+..+++|+.++..+++++. +.+.++|++||...+..
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 147 (272)
T PRK08589 83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAA--------------- 147 (272)
T ss_pred cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCC---------------
Confidence 89999999875321 11 1 2235667889988877766543 34458999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+++.++.++ |++++.+.||.|..+.
T Consensus 148 -~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~ 191 (272)
T PRK08589 148 -DLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPL 191 (272)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCch
Confidence 1223569999999999999998764 7999999999987663
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=131.20 Aligned_cols=163 Identities=16% Similarity=0.049 Sum_probs=119.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.+++++||||+|+||++++++|++.| ++|+++.+......+.. ..+.. ..++.++..|+++... .
T Consensus 5 ~~~~~lItG~s~~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALAQEG-AKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999 89887655322221111 11111 2357889999988632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.+|+|||+||........ ...++.++.|+.++..+++++.. .+. ++|++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 149 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAG-------------- 149 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCC--------------
Confidence 589999999875432221 34567789999999999888764 333 8999999754321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...+.+.+.++.++ ++++++++|+.+.++.
T Consensus 150 --~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~ 193 (247)
T PRK12935 150 --GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEM 193 (247)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChh
Confidence 1223569999999999998887764 8999999999998764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=127.94 Aligned_cols=159 Identities=17% Similarity=0.065 Sum_probs=122.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+|.++||||+++||.++++.|.+.| ++|++..|+.++..+...++.. ..+.....|++|... .++|
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAG-AKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCC-CeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence 5899999999999999999999999 9999999943333222222222 458889999999743 3699
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++||+||....... .++++..+++|++++.+..++. .+.+. +||++||.... .+.
T Consensus 84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~----------------~~y 147 (246)
T COG4221 84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR----------------YPY 147 (246)
T ss_pred EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc----------------ccC
Confidence 99999998655322 2456788899999999998875 34444 89999998631 233
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYG 208 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G 208 (228)
...+.|+.+|+....+.+.++.+. +++++.+-||.+-.
T Consensus 148 ~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~ 188 (246)
T COG4221 148 PGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVET 188 (246)
T ss_pred CCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecc
Confidence 334679999999999999988764 89999999999844
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=132.04 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=120.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++++||||+|+||++++++|++.| ++|+++.+......+.. ..+.. ...+.++.+|+++... .+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999 99988866333222222 12111 2368889999998632 36
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||++|....... .++.+..+++|+.++..+++++.. .+ .+||++||....
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~---------------- 144 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH---------------- 144 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc----------------
Confidence 8999999987543221 133467789999999999987653 22 389999997432
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+..+...|+.+|...+.+++.++.+ ++++++.++||.++++.
T Consensus 145 ~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~ 190 (256)
T PRK12743 145 TPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPM 190 (256)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcc
Confidence 23334467999999999999988775 48999999999999874
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=131.50 Aligned_cols=166 Identities=16% Similarity=0.024 Sum_probs=120.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
.++++++||||+|+||++++++|.+.| ++|++++|+.....+.. ..+.. ..++..+..|+++...
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAG-ADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 347899999999999999999999999 99999998543221222 22211 2357788899988632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++.++.+++|+.++..+++++ ++.+. ++|++||...+...
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------ 152 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN------------ 152 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC------------
Confidence 258999999997543221 2334677889999997776654 33444 89999997543211
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|+..+.+.+.++.+ +|+++++++||.+.++.
T Consensus 153 --~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~ 197 (254)
T PRK06114 153 --RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPM 197 (254)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcc
Confidence 1112356999999999999998765 48999999999998764
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=131.73 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=116.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC-c
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE-V 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~-~ 98 (228)
+|+++||||+|+||+++++.|++.| ++|+++.++.....+....... .++.++++|+++... .. +
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i 82 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREG-ARVVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKPI 82 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999 8998876532222122211111 367788999987532 13 8
Q ss_pred cEEEEccCCCCc----------ccccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 99 DQIYHLACPASP----------IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 99 D~vi~~a~~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
|++||+||.... ....++..+.++.|+.++..+++++. +.+. ++|++||....
T Consensus 83 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~------------ 150 (253)
T PRK08642 83 TTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ------------ 150 (253)
T ss_pred eEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc------------
Confidence 999999985321 01112345678999999999998875 3344 89999986432
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+..+.+.|+.+|...+.+++.++.+ .+++++.++||.+..+
T Consensus 151 ----~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~ 195 (253)
T PRK08642 151 ----NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTT 195 (253)
T ss_pred ----CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCc
Confidence 23334467999999999999999876 3799999999998765
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=132.53 Aligned_cols=164 Identities=13% Similarity=-0.011 Sum_probs=121.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+++++||||+|+||++++++|++.| ++|+++.|...+..+....+.. ..++.++++|+++... .
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 457899999999999999999999999 9999998854332222222212 2357889999988632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ ++.+..+++|+.++..+.+.+. +.+. +||++||.....
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 151 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL--------------- 151 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC---------------
Confidence 589999999976543222 3345677899999887777654 3444 899999974221
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |++++.++||.+..+.
T Consensus 152 -~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~ 196 (265)
T PRK07097 152 -GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQ 196 (265)
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccc
Confidence 11223569999999999999998774 8999999999998874
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=131.49 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=115.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|.+.| ++|+++.+.... ....+.. ..+.++.+|+++... .++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~---~~~~l~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG-AKVAVLYNSAEN---EAKELRE-KGVFTIKCDVGNRDQVKKSKEVVEKEFGRV 80 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCcHH---HHHHHHh-CCCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 999888764322 1222211 247788999988632 268
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++.+..+++|+.++..+.+ .+++.+. +||++||...++. +
T Consensus 81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------------~ 145 (255)
T PRK06463 81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT---------------A 145 (255)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------------C
Confidence 999999987532211 13345678999999755544 4444444 8999999866531 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|.+.+.+.+.++.+ +++++++++||.+-.+
T Consensus 146 ~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~ 188 (255)
T PRK06463 146 AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETD 188 (255)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCc
Confidence 122356999999999999999875 4899999999988654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=129.87 Aligned_cols=162 Identities=15% Similarity=0.039 Sum_probs=119.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+++++||||+|+||++++++|++.| ++|++++|+..+..+....+. ...++.++.+|+++... .++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG-VNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999999999 899999995433222222221 12367888999987632 269
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|........ .+.++.++.|+.++.++.+++.. .+. ++|++||...+..
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~---------------- 149 (239)
T PRK07666 86 DILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKG---------------- 149 (239)
T ss_pred cEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccC----------------
Confidence 9999999875432221 22356789999999888887653 334 7999999765422
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+++.++.+ ++++++++||+.+.++.
T Consensus 150 ~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~ 193 (239)
T PRK07666 150 AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDM 193 (239)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcc
Confidence 222346999999999998887754 48999999999998863
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=136.00 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=125.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~----------- 95 (228)
..+|+++||||+++||.+++++|++.| ++|+++.|+..+..+....+. ....+.++++|+.+...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 347999999999999999999999999 999999995443322222221 12357889999988532
Q ss_pred -CCccEEEEccCCCCccc---ccCCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCC-CCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDP-LVHPQDESYWGN 166 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~-~~~~~~e~~~~~ 166 (228)
.++|++||+||...... ..+..+..+++|+.++..+.+.+. +...|+|++||...+... ...++.+.
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~---- 166 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE---- 166 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence 25999999999765322 235567789999999887777654 333489999998643221 11112221
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~~ 210 (228)
.+..+...|+.||...+.+.+.++.+ .++.++.+.||.+..+-
T Consensus 167 -~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 167 -RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred -ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 23445568999999999999998753 37999999999986643
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=130.74 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=116.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC-CCceEEEeccCCCccc-------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~d~~~~~~------------- 95 (228)
.+|+++||||+|+||++++++|.+.| ++|++..+..... .+...++.. ...+..++.|+.+...
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999 9998875422211 111112111 2345667778876420
Q ss_pred -----CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc--C-CeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -----IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~--~-~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||........ +..+..+++|+.++..+++++... + .+||++||...+.
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 150 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------- 150 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc-----------
Confidence 1699999999975332222 224567789999999999876543 1 3899999986542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|+..+.+++.++.++ |++++++.||.|.++.
T Consensus 151 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~ 195 (252)
T PRK12747 151 -----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDM 195 (252)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCch
Confidence 12223569999999999999988764 8999999999998874
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=131.58 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=122.7
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc---------
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~--------- 95 (228)
++...++|+++||||+|+||++++++|++.| ++|++++|+.....+....+. ...++.++.+|+++...
T Consensus 5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 5 QRFSLAGQVALVTGSARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3444568999999999999999999999999 999999995332222112121 12357889999988632
Q ss_pred ---CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||++|........ ++.++.++.|+.++..+.+.+. +.+. +||++||...+.
T Consensus 84 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------- 152 (256)
T PRK06124 84 AEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV----------- 152 (256)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc-----------
Confidence 2579999999875432221 2345678899999988886654 3454 899999975432
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+++.++.+. +++++.++|+.+.++.
T Consensus 153 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~ 197 (256)
T PRK06124 153 -----ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATET 197 (256)
T ss_pred -----CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcc
Confidence 11223579999999999999887653 8999999999999875
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=130.33 Aligned_cols=162 Identities=15% Similarity=0.031 Sum_probs=118.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+++++||||+|+||++++++|++.| ++|++++|+..........+....++.++++|+++... .++|
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999 89999999543222222222222468889999987632 2699
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+|||++|....... .++.+..++.|+.++..+++++.+. +. ++|++||...+. +..
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~~ 148 (237)
T PRK07326 85 VLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------FFA 148 (237)
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------CCC
Confidence 99999986543221 1234567889999999988876542 33 799999975432 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|+..+.+.+.++.+ .+++++++||+.+..+.
T Consensus 149 ~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~ 190 (237)
T PRK07326 149 GGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHF 190 (237)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcc
Confidence 3456999999999988887644 48999999999987754
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=130.04 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=118.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|++.| ++|++++|+... . .....+.++++|+.+... .++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g-~~v~~~~r~~~~-----~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAG-ATVVVCGRRAPE-----T--VDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCChhh-----h--hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999 999999995432 0 112367888999987532 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----c-C-CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----V-G-ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~-~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||+||........ ...+..+++|+.++..+++++.. . + .+||++||...+.
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 140 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR---------------- 140 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC----------------
Confidence 9999999865432211 23457789999999999998753 2 2 3899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+++.++.++ .++++.++||.+..+.
T Consensus 141 ~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~ 184 (252)
T PRK07856 141 PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQ 184 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChH
Confidence 22233679999999999999998764 3899999999997764
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=151.16 Aligned_cols=126 Identities=26% Similarity=0.389 Sum_probs=103.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~ 107 (228)
|+|+||||+||||++++++|+++| ++|++++|..... . ...+.++.+|+.+.. +.++|+|||+|+.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~ 71 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWV 71 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence 689999999999999999999999 9999999853211 0 125778889998753 3479999999975
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
..+ .+++|+.++.++++++++.++ +||++||.. |..+|++
T Consensus 72 ~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~l 112 (854)
T PRK05865 72 RGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQM 112 (854)
T ss_pred ccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHH
Confidence 321 458899999999999999987 899999851 7778877
Q ss_pred HHHHHHHhCCcEEEeeeccccCCC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+. +++++++++||+++|||+
T Consensus 113 l~----~~gl~~vILRp~~VYGP~ 132 (854)
T PRK05865 113 LA----DCGLEWVAVRCALIFGRN 132 (854)
T ss_pred HH----HcCCCEEEEEeceEeCCC
Confidence 64 358999999999999996
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-17 Score=130.27 Aligned_cols=163 Identities=15% Similarity=-0.022 Sum_probs=119.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.+++++||||+|+||++++++|++.| ++|++..|...... +....... ...+.++..|+++... .
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEG-SLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999 89888776432211 11111111 1346678888887532 3
Q ss_pred CccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++|+|||+||........+ ..+..+++|+.+...+++++.+. ..+||++||...|. +
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 147 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------P 147 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------C
Confidence 6899999999754332221 12466799999999998887653 23799999987653 3
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...|.+++.+++++ ++++.+++|+.+.++.
T Consensus 148 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~ 190 (252)
T PRK06077 148 AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKL 190 (252)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChH
Confidence 3445679999999999999998876 6899999999998764
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=132.28 Aligned_cols=158 Identities=16% Similarity=0.037 Sum_probs=116.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||++++++|++.| ++|++++|+. +....... ...+.++.+|+++... .+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALG-ARVAIGDLDE----ALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 9999998843 22222111 1147788999988642 36
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ +..+..+++|+.++..+.+.+ .+.+. +||++||...+.
T Consensus 79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 142 (273)
T PRK07825 79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI---------------- 142 (273)
T ss_pred CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------------
Confidence 89999999976433222 224567789999888877765 34555 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.+|...+.+.+.++.+ .|+++++++|+.+..+
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~ 186 (273)
T PRK07825 143 PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTE 186 (273)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcch
Confidence 1223356999999999888877655 4899999999988654
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=128.16 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=115.6
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-ccCCccEEEEccCCCCcccc
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACPASPIFY 113 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~D~vi~~a~~~~~~~~ 113 (228)
|+|||||||||++|+..|.+.| |+|+++.|+..+....+. ..+. ..+..+. ...++|+|||+||.......
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR~~~~~~~~~~-----~~v~--~~~~~~~~~~~~~DavINLAG~~I~~rr 72 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTRRPPKASQNLH-----PNVT--LWEGLADALTLGIDAVINLAGEPIAERR 72 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEcCCcchhhhcC-----cccc--ccchhhhcccCCCCEEEECCCCcccccc
Confidence 6899999999999999999999 999999996555443321 1222 1222222 22379999999997654332
Q ss_pred c--CCchhhHHhhHHHHHHHHHHHHHcC--C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 114 K--YNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 114 ~--~~~~~~~~~n~~~~~~l~~~~~~~~--~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
+ +..+...+..+..+..+.++..+.. . .+|.-|.++.||+..+..++|+ ++. ...+-+..-..-|+...
T Consensus 73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~-----~~~-g~~Fla~lc~~WE~~a~ 146 (297)
T COG1090 73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEE-----SPP-GDDFLAQLCQDWEEEAL 146 (297)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecC-----CCC-CCChHHHHHHHHHHHHh
Confidence 2 2345778999999999999988654 3 4788888899999988889987 232 22445555555566554
Q ss_pred HHHHHhCCcEEEeeeccccCCC
Q 027129 189 DYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
.. +..|.+++++|.|.|.|+.
T Consensus 147 ~a-~~~gtRvvllRtGvVLs~~ 167 (297)
T COG1090 147 QA-QQLGTRVVLLRTGVVLSPD 167 (297)
T ss_pred hh-hhcCceEEEEEEEEEecCC
Confidence 43 4459999999999999975
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=131.88 Aligned_cols=162 Identities=18% Similarity=0.080 Sum_probs=119.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~D 99 (228)
|+++||||+|+||++++++|++.| ++|++++|...+..+....+.. ...+.++++|+++... .++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999 9999999854332222222211 2467788999987532 2699
Q ss_pred EEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++||++|......... +.++.+++|+.++..+.+. +++.+. +||++||...+. +.
T Consensus 80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~ 143 (270)
T PRK05650 80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM----------------QG 143 (270)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------------CC
Confidence 9999999765432222 2345678898888776665 455555 899999986542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
...+.|+.+|...+.+.+.++.++ |+++++++|+.+..+..
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~ 187 (270)
T PRK05650 144 PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLL 187 (270)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcc
Confidence 234679999999999998888763 89999999999987753
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=132.29 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------CCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------IEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------~~~D~vi~ 103 (228)
+++++||||+|+||++++++|++.| ++|+++.|+..... .+.... ....+.++.+|+++... .++|+|||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKG-HNVIAGVQIAPQVT-ALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 4789999999999999999999999 99999998532211 111111 12357888899988632 27999999
Q ss_pred ccCCCCccccc----CCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASPIFYK----YNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 104 ~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
+||........ +..+..+++|+.++..+.+. +.+.+. +||++||...+.. .....
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~----------------~~~~~ 143 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT----------------GPFTG 143 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC----------------CCCcc
Confidence 99875432222 22345678888887766654 344554 8999999753321 11235
Q ss_pred hHHHhHHHHHHHHHHHHHH---hCCcEEEeeecccc
Q 027129 175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY 207 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~ 207 (228)
.|+.+|...|.+.+.+..+ .|++++++||+.+.
T Consensus 144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 6999999999998887654 58999999998764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=131.04 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=122.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcc------------c
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------L 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~------------~ 95 (228)
.+|+++||||+|+||++++++|.+.| ++|++++|+.+...+....+. ...++..+.+|+++.. +
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999 999999985432222111211 1246788899998753 2
Q ss_pred CCccEEEEccCCCCcc----cccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||++|..... ...++.+..+.+|+.++..+++++. +.+. ++|++||...+..
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~------------- 153 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTH------------- 153 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCC-------------
Confidence 3689999999864321 1223456778999999999988764 3444 8999999865532
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+++.++.+ .+++++.++||.+.++..
T Consensus 154 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~ 198 (257)
T PRK09242 154 ---VRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLT 198 (257)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCccc
Confidence 223356999999999999998765 489999999999988753
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=129.43 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=116.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-CchhhhhhcC--CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
.+.++++||||+|+||++++++|++.|.++|++++|+... ..+...++.. ...+.++++|+++...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 4578999999999999999999999842899999996554 2222222222 2367889999987532
Q ss_pred CCccEEEEccCCCCcccc-cCCc---hhhHHhhHHHHHH----HHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY-KYNP---VKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~-~~~~---~~~~~~n~~~~~~----l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||++|....... ..+. .+.+++|+.++.. ++..+++.+. +||++||...+.
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~-------------- 151 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER-------------- 151 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC--------------
Confidence 269999999987533211 1121 2457899988876 4556666665 899999985321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.||+....+.+.++.+ +++++++++||.+..+
T Consensus 152 --~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~ 195 (253)
T PRK07904 152 --VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR 195 (253)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence 1122346999999999887776543 5899999999999875
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=131.23 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=118.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|+++| ++|++++|+.....+..... ..++.++++|+++... .++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 99999999533222211111 2357888999998632 268
Q ss_pred cEEEEccCCCCccc---ccCCchhhHHhhHHHHHHHHHHHHH---cC-CeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR---VG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~---~~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|++||+||...... ..+++.+.+++|+.++..+++++.. .+ .++|++||...+. +..
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 145 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------------AQT 145 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------------CCC
Confidence 99999998643221 1233456788999999888887543 22 3899999975432 111
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
....|+.+|...+.+.+.++.++ |+++++++||.+..+
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~ 186 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSR 186 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccCh
Confidence 23569999999999999988763 899999999988765
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=127.92 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=115.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~D~ 100 (228)
+|+++||||+|+||++++++|++.| ++|+++.|..... ...+++..|+++... .++|+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAIDD----------FPGELFACDLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCcccc----------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcE
Confidence 6899999999999999999999999 9999999954331 012567788887532 15899
Q ss_pred EEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 101 vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+||++|....... .++....++.|+.++..+.+++ ++.+. ++|++||...|+..
T Consensus 72 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------- 134 (234)
T PRK07577 72 IVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL----------------- 134 (234)
T ss_pred EEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-----------------
Confidence 9999997554322 1234566788999888776655 34455 89999998766421
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.|+.+|...+.+++.++.+ +|+++++++||.+..+.
T Consensus 135 ~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~ 176 (234)
T PRK07577 135 DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETEL 176 (234)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcc
Confidence 1256999999999999987765 48999999999998764
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=129.80 Aligned_cols=161 Identities=16% Similarity=0.067 Sum_probs=118.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+++++||||+|+||++++++|++.| ++|++++|+..+..+....+ ...++..+++|+.+... .++|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g-~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAG-DRVLALDIDAAALAAFADAL-GDARFVPVACDLTDAASLAAALANAAAERGPVD 79 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999999999999999999999 99999998543322222222 23467888999988642 2589
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+|||++|........ ......++.|+.++..+++++. +.+. +||++||...+..
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------- 142 (257)
T PRK07074 80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA----------------- 142 (257)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------------
Confidence 999999875432222 1223456789999988888773 3444 7999999643211
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...+.+++.++.++ ++++++++|+.++++..
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~ 186 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAW 186 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchh
Confidence 012359999999999999998764 79999999999998853
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=130.27 Aligned_cols=164 Identities=14% Similarity=0.062 Sum_probs=119.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|++.| ++|+++.|+.....+....+. ...++..+.+|+++... .+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999999999 899999995332211111111 12357788889887532 25
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----c---------CCeEEEEccceeccCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----V---------GARILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~---------~~r~i~~Ss~~~y~~~~~~~~~ 160 (228)
+|++||++|........ .+++..++.|+.++..+++++.. . +.++|++||...+.
T Consensus 87 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 158 (258)
T PRK06949 87 IDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR-------- 158 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC--------
Confidence 89999999864432211 23456788999999888886642 1 12799999986542
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+++.++.+ +++++++++||.++++..
T Consensus 159 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~ 204 (258)
T PRK06949 159 --------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEIN 204 (258)
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcc
Confidence 1223356999999999999998776 489999999999998754
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=129.10 Aligned_cols=163 Identities=14% Similarity=0.131 Sum_probs=119.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------~ 96 (228)
+++++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++++|+++... .
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999 999999985433222111111 13467889999998632 3
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ ...+..+++|+.++..+++++. +.+. +||++||...+...
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 147 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL------------- 147 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC-------------
Confidence 699999999975543222 2234567899999988888764 3444 89999997543211
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.++ ++++++++|+.+.++.
T Consensus 148 --~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~ 191 (248)
T PRK08251 148 --PGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEM 191 (248)
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchh
Confidence 1123569999999999998887653 7999999999998764
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=131.02 Aligned_cols=162 Identities=15% Similarity=0.037 Sum_probs=118.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------cCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~~ 98 (228)
+++++||||+|+||++++++|++.| ++|++++|+..+..+....+.. ..++.++.+|+++.. ..++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999999999 9999999954332222222211 235778889998763 1269
Q ss_pred cEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||..... . ..++.+..+++|+.++..+.++ +++.+. ++|++||...+..
T Consensus 85 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~--------------- 149 (254)
T PRK07478 85 DIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA--------------- 149 (254)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc---------------
Confidence 9999999974321 1 1133467789999887776554 444444 8999999765421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |++++++.||.+-.+
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 193 (254)
T PRK07478 150 GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTP 193 (254)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCc
Confidence 11233579999999999999988764 799999999999766
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=128.30 Aligned_cols=160 Identities=17% Similarity=0.132 Sum_probs=115.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi~ 103 (228)
+|+++||||+|+||++++++|+++| ++|+++.+... +....+.....+.++..|+++.. ..++|++||
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G-~~v~~~~~~~~---~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDG-ANVRFTYAGSK---DAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCCH---HHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 6899999999999999999999999 89988766322 22222212223567778887753 235899999
Q ss_pred ccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 104 LACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 104 ~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
+||....... .++.+..+++|+.++..++..+... +.++|++||..... .+..+...|
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------~~~~~~~~Y 146 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR---------------MPVAGMAAY 146 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc---------------CCCCCCcch
Confidence 9987532211 2345678899999999887655442 23899999974311 122344679
Q ss_pred HHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 177 DEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+.+|+..+.+++.++.+ .++++++++||.+..+.
T Consensus 147 ~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~ 183 (237)
T PRK12742 147 AASKSALQGMARGLARDFGPRGITINVVQPGPIDTDA 183 (237)
T ss_pred HHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCc
Confidence 99999999999988775 47999999999997764
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=130.59 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=117.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+++++||||+|+||.+++++|++.| ++|++++|+..........+.. ...+.+++.|+.+... .
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQG-AHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 446899999999999999999999999 9999999843322222222211 2346778889887632 2
Q ss_pred CccEEEEccCCCCc--c---cccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||+||.... . ...++.+..++.|+.++..+++++ ++.+. ++|++||...+.
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 150 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------------- 150 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC--------------
Confidence 58999999985321 1 111234567899999998888766 33444 899999874331
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+..+.+.|+.+|...+.+++.++.++ |++++.+.||.+..+
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~ 194 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTK 194 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCc
Confidence 22234569999999999999998764 899999999998664
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=130.67 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=119.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
.+++++||||+|+||.+++++|++.| ++|+++.|. . ..+....... ...+.++++|+++... .
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAG-ADIIITTHG-T-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCC-c-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 999999885 2 2222222221 2457889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||++|....... .++.+..++.|+.++..+.+++. +.+. ++|++||...+..
T Consensus 91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 156 (258)
T PRK06935 91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG-------------- 156 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC--------------
Confidence 68999999987543221 12345678899999877776554 4444 8999999876532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+++.+++++ |+++++++||.+..+.
T Consensus 157 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~ 200 (258)
T PRK06935 157 --GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTAN 200 (258)
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccc
Confidence 1223469999999999999998764 8999999999998764
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=131.16 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=118.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~-----------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++..+++|+++... .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 347899999999999999999999999 9999999853322221122111 2357888999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||++|....... .+++...+++|+.++..+.++ +++.+. ++|++||...+.
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~--------------- 149 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE--------------- 149 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC---------------
Confidence 59999999986543222 233456778888877666554 444554 899999986542
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |++++.+.||.+..+
T Consensus 150 -~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 193 (263)
T PRK08339 150 -PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTD 193 (263)
T ss_pred -CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccH
Confidence 12223569999999999999988764 899999999998665
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=126.57 Aligned_cols=162 Identities=19% Similarity=0.133 Sum_probs=117.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|++.| ++|+++.|+............ ....+.++.+|+.+... .
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQG-ANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 999888875443222221111 13467888889988642 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEcccee-ccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~ 166 (228)
++|+|||++|........ ...++.++.|+.++.++++++.. .+. +||++||... ++.
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------------- 149 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------------- 149 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC-------------
Confidence 689999999875432222 23456678999999999888764 333 7999999743 321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.++.+ .++++++++|+.+.++.
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~ 192 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDM 192 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcc
Confidence 12356999999999988887654 38999999999886654
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=130.67 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=118.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+++||++++++|+++| ++|+++.|... +...... ...++.+++.|+++... .
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGVAEA---PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCchH---HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999 99999887421 1111111 12357788999998632 3
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||+||....... .++++..+++|+.++..+.+++. +.+ .+||++||...+...
T Consensus 83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------ 150 (251)
T PRK12481 83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG------------ 150 (251)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC------------
Confidence 69999999997543221 23456778999999888877653 333 389999998665321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.....|+.+|...+.+.+.++.+ +|++++.++||.+-.+
T Consensus 151 ----~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~ 192 (251)
T PRK12481 151 ----IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATD 192 (251)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccC
Confidence 11246999999999999998875 4899999999998665
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=130.76 Aligned_cols=157 Identities=17% Similarity=0.098 Sum_probs=115.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----------------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------------- 95 (228)
||+++||||+|+||++++++|++.| ++|++++|+..+. . .. ....++.++.+|+.+...
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G-~~v~~~~r~~~~~--~-~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPG-IAVLGVARSRHPS--L-AA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG 75 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCC-CEEEEEecCcchh--h-hh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence 6899999999999999999999999 9999999854321 1 11 112357788899887521
Q ss_pred CCccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
..+|++||++|...+... .+..+..++.|+.++..+.+.+. +.+. +||++||...+.
T Consensus 76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------- 142 (243)
T PRK07023 76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN------------- 142 (243)
T ss_pred CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------------
Confidence 157899999987543211 12345677899999776665543 3333 899999986552
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH--hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~--~~i~~~ilRp~~i~G~ 209 (228)
+..+...|+.+|...|.+++.++.+ .++++++++|+.+-.+
T Consensus 143 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 ---AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 3344567999999999999988764 4899999999988543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=129.90 Aligned_cols=163 Identities=15% Similarity=0.004 Sum_probs=116.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh-hhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||+|+||++++++|++.| ++|+++.+......+... ... ....+.++.+|+++... .
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHG-FDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999 899888764322221111 111 12457888999988532 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||....... ..+.++.+++|+.++..+++++... +. ++|+++|...+..
T Consensus 87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~-------------- 152 (258)
T PRK09134 87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL-------------- 152 (258)
T ss_pred CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC--------------
Confidence 58999999986543221 2334677899999999999877653 22 6888887644321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...|.+.+.++.++ ++++++++||.++...
T Consensus 153 --~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~ 195 (258)
T PRK09134 153 --NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSG 195 (258)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCc
Confidence 1112469999999999999998765 4899999999887643
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=128.38 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=126.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-----CccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~D~vi~~a 105 (228)
++-.+.|+|||||+|++++.+|.+.| .+|++--|.++...-.++-+.+..++-+...|+.|++.. ...+|||+.
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLI 138 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLI 138 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEee
Confidence 35688999999999999999999999 999999996665555555555567788888898887654 689999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
| ...+.....+.++|..++..+++.|++.|+ |||++|+.+. + ....+.|-.+|+++|
T Consensus 139 G----rd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga-----------------n-v~s~Sr~LrsK~~gE 196 (391)
T KOG2865|consen 139 G----RDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA-----------------N-VKSPSRMLRSKAAGE 196 (391)
T ss_pred c----cccccCCcccccccchHHHHHHHHHHhhChhheeehhhccc-----------------c-ccChHHHHHhhhhhH
Confidence 7 333334456778999999999999999999 9999999762 1 233367999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
..++... .+.+|+||+.|||..+..
T Consensus 197 ~aVrdaf----PeAtIirPa~iyG~eDrf 221 (391)
T KOG2865|consen 197 EAVRDAF----PEATIIRPADIYGTEDRF 221 (391)
T ss_pred HHHHhhC----CcceeechhhhcccchhH
Confidence 9988753 568999999999987654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=128.06 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=120.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|.+.| ++|++++|...........+.. ..++.++..|+++... .+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999 9999998843322211111111 2357788899987632 26
Q ss_pred ccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|++||++|........ ++.+..++.|+.++.++++++. +.+. ++|++||..... +
T Consensus 89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 152 (255)
T PRK06113 89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN----------------K 152 (255)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC----------------C
Confidence 89999999975433222 2344568999999999999875 3333 899999975431 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+++.++.+ .+++++++.||.+..+.
T Consensus 153 ~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~ 196 (255)
T PRK06113 153 NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 196 (255)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccc
Confidence 223356999999999999998765 48999999999987653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=127.85 Aligned_cols=163 Identities=16% Similarity=0.072 Sum_probs=118.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||++++++|+++| ++|++++|... ..+...... ...++.++.+|+++... .+
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G-~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHG-ANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 99999998532 111222221 12457788999988632 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||........ ...++.++.|+.++..+++++.. .+. +||++||..... .
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------~ 147 (263)
T PRK08226 83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM---------------V 147 (263)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------c
Confidence 89999999975432222 22345688999999998887653 333 899999864310 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+++.++.++ +++++.++||.+.++.
T Consensus 148 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~ 192 (263)
T PRK08226 148 ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPM 192 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHH
Confidence 11223569999999999999988764 7999999999998863
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=127.59 Aligned_cols=163 Identities=18% Similarity=0.095 Sum_probs=118.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++++||||+|+||++++++|+++| ++|++++|+.......... .. ...++.++..|+++... .+
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999999 9999999853311111111 11 12358889999998632 25
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||++|....... .+..+..++.|+.++.++.+. +++.+. +||++||...+..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~--------------- 145 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG--------------- 145 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC---------------
Confidence 9999999987543221 233456778999998888554 454454 8999999865532
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+++.++.+ .++++++++|+.+.++..
T Consensus 146 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~ 190 (245)
T PRK12824 146 -QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMV 190 (245)
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcch
Confidence 122356999999999998888754 489999999999987643
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=126.51 Aligned_cols=164 Identities=20% Similarity=0.145 Sum_probs=120.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|++.| ++|+++.|+..+..+....+.. ..++.++.+|+++... .+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 9999998853322222222211 2368889999988642 36
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|........ .+.+..++.|+.++.++++++.. .+. +||++||...+..
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 149 (250)
T PRK12939 85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWG--------------- 149 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccC---------------
Confidence 99999999875432221 23456678999999999887643 233 8999999765421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+++.++.+ .++++++++||.+..+..
T Consensus 150 -~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~ 194 (250)
T PRK12939 150 -APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEAT 194 (250)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccc
Confidence 122356999999999999988765 489999999999877653
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=127.04 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=116.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|++.| ++|+++.+..... .+....... ...+..+.+|+.+... .
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDG-FKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999999 8888865422211 111222211 2356677899987632 2
Q ss_pred CccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||...... ..++++..+++|+.++..+.+++ ++.+. +||++||.....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 145 (246)
T PRK12938 81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------------- 145 (246)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC---------------
Confidence 6899999998754221 12345677899999977766654 44555 899999974321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.+ .++++++++|+.+.++..
T Consensus 146 -~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~ 191 (246)
T PRK12938 146 -GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV 191 (246)
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchh
Confidence 1223457999999999988887765 489999999999988753
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-17 Score=128.34 Aligned_cols=162 Identities=12% Similarity=0.038 Sum_probs=120.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+++++||||+|+||++++++|.+.| ++|+++++... .+....+.. ...+..++.|+++... .
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G-~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAG-CDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 447899999999999999999999999 99998876322 222222211 2357788999987522 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||+||....... .+++++.+++|+.++..+++++.. .+ .++|++||...+...
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 152 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG------------ 152 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC------------
Confidence 69999999997543221 234567889999999988887643 23 379999998765321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.++.+ +|++++.++||.+-.+.
T Consensus 153 ----~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~ 195 (253)
T PRK08993 153 ----IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNN 195 (253)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcc
Confidence 11246999999999999998876 48999999999997653
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=131.73 Aligned_cols=163 Identities=18% Similarity=0.122 Sum_probs=119.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+++++||||+|+||+++++.|.+.| ++|++++|+.....+....+.....+..+.+|+++... .+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARG-AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999 99999998433222222222222345566789988532 36
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|+|||+||........ ++.++.+++|+.++..+++++.. .+.+||++||...+..
T Consensus 86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 149 (296)
T PRK05872 86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAA---------------- 149 (296)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCC----------------
Confidence 89999999975432222 23456788999999999887643 2238999999865532
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +|++++++.|+.+..+
T Consensus 150 ~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~ 192 (296)
T PRK05872 150 APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTD 192 (296)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccch
Confidence 222357999999999999988754 5899999999998765
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=128.87 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=114.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCccc----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~---------- 95 (228)
.+|+++||||+|+||++++++|++.| ++|+++.+......+...... ....+.++++|+++...
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQG-AKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999 887777664433322222111 12367888999987632
Q ss_pred --CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++++..+++|+.++..+++++... +.++++++|......
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------- 152 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------- 152 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc-------------
Confidence 368999999997443221 2335677899999999998887643 235666533322110
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|.+.|.+.+.++.++ ++++++++||.+.++
T Consensus 153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~ 195 (257)
T PRK12744 153 ---TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTP 195 (257)
T ss_pred ---CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccc
Confidence 1112569999999999999998774 699999999999765
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=125.61 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=117.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc------ccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~D~vi~~ 104 (228)
.+|+++||||+|+||++++++|+++| ++|++++|...... ..++.++..|+++. ...++|++||+
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQG-AQVYGVDKQDKPDL--------SGNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCC-CEEEEEeCCccccc--------CCcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 36899999999999999999999999 99999988533211 23577888888775 12379999999
Q ss_pred cCCCCc-c----cccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 105 ACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 105 a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
||.... . ...++.++.+++|+.++.++++++.. .+. +||++||...+.. .....
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~~~ 138 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA----------------GGGGA 138 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC----------------CCCCc
Confidence 986421 1 11233567789999999999887653 333 7999999865421 11224
Q ss_pred hHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.|+.+|...+.+.+.++.++ |+++++++|+.+.++..
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~ 178 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMT 178 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccc
Confidence 69999999999999888764 89999999999988743
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.1e-17 Score=128.32 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=117.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+++||||+|+||+++++.|++.| ++|++++|+.....+....+. ....+.++++|+++... .++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4899999999999999999999999 899999985332222111111 12467889999987532 268
Q ss_pred cEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||++|...... ..++++..+++|+.++.++++++.+ .+ . +||++||...+.
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 143 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD---------------- 143 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc----------------
Confidence 99999998543211 1123466789999999999988742 22 2 799999885331
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.++||.+..+
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~ 188 (252)
T PRK07677 144 AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERT 188 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccc
Confidence 1122246999999999999987765 3899999999999854
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=127.82 Aligned_cols=163 Identities=23% Similarity=0.150 Sum_probs=118.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++++++||||+|+||++++++|++.| ++|+++.|+.....+.. ..+. ...++.+++.|+++... .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG-FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 89888877433221111 1111 12467888999987532 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc--C-CeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~--~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++|++||+||....... ..+.+..++.|+.++..+++++.+. . .++|++||...+. +
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL----------------P 146 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------C
Confidence 69999999997543221 1234567889999999998887653 2 2899999875532 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+++.++.++ ++++++++|+.+-.+.
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~ 190 (245)
T PRK12937 147 LPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATEL 190 (245)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCch
Confidence 2234569999999999999887653 7999999999876653
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=125.97 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=113.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||..+++.|++.| ++|+++.++.....+.. ..+. ...++.++++|+++... .+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999 88887654322221111 1111 12357888999987532 26
Q ss_pred ccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHHH----cC----CeEEEEcccee-ccCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKR----VG----ARILLTSTSEV-YGDPLVHPQDESY 163 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~----~r~i~~Ss~~~-y~~~~~~~~~e~~ 163 (228)
+|++||+||....... ..+.+..+++|+.++..+++.+.+ .+ .+||++||... ++..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~--------- 151 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP--------- 151 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC---------
Confidence 9999999987543211 122356688999999888754332 11 26999998754 3211
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.+++++ ++++++++||.+..+.
T Consensus 152 -------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~ 194 (248)
T PRK06947 152 -------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEI 194 (248)
T ss_pred -------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccc
Confidence 112359999999999999988764 7999999999998874
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=126.33 Aligned_cols=164 Identities=12% Similarity=0.027 Sum_probs=116.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 98 (228)
.+++++||||+|+||.++++.|++.| ++|++++|+..+.............+.++++|+++.. ..++
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999 9999999953322211122222235788899998753 1247
Q ss_pred cEEEEccCCCCccccc--CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~--~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
|.+||+++........ +.....++.|+.+...+++.+... +.++|++||..... .+..+.
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------~~~~~~ 147 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY---------------KASPDQ 147 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc---------------cCCCCc
Confidence 9999999754321111 223456788888887777766542 34799999874311 011233
Q ss_pred ChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..|+.+|...+.+++.++.+. +++++++||+.++++.
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~ 187 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF 187 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence 569999999999988887664 8999999999999874
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-17 Score=127.97 Aligned_cols=163 Identities=19% Similarity=0.091 Sum_probs=119.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||.+++++|++.| ++|+++.|+..........+.. ..++..+.+|+++... .+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999 9999999954332222222111 2357888999987532 25
Q ss_pred ccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||++|...... ..+++++.+++|+.++..+++++ .+.+. ++|++||...+..
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~-------------- 150 (253)
T PRK06172 85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGA-------------- 150 (253)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccC--------------
Confidence 799999998643221 12344567889999997776643 33444 8999999876532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.++ +++++++.||.+-.+.
T Consensus 151 --~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~ 194 (253)
T PRK06172 151 --APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDM 194 (253)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChh
Confidence 2234579999999999999998764 7999999999986654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=128.18 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=116.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|+++++...... ...+.+++.|+++... .++
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G-~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANG-ANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGRI 78 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999988543221 1357788999988632 268
Q ss_pred cEEEEccCCCCccc-------------ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCC
Q 027129 99 DQIYHLACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 99 D~vi~~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
|++||+||...... ..++.+..+++|+.++..+++++.. .+. +||++||...+..
T Consensus 79 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------- 151 (266)
T PRK06171 79 DGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEG------- 151 (266)
T ss_pred CEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCC-------
Confidence 99999998643211 1123356788999999999887754 233 7999999865421
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeecccc
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY 207 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~ 207 (228)
....+.|+.+|...+.+++.++.+ +|+++++++||.+.
T Consensus 152 ---------~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 152 ---------SEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ---------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 122357999999999999998875 48999999999885
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=127.98 Aligned_cols=160 Identities=19% Similarity=0.119 Sum_probs=112.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++|+||||+|+||.+++++|++.| ++|++++|+..... ...... ...+++.|+++... .++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~~r~~~~~~-~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEG-ATVVVGDIDPEAGK-AAADEV---GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHH-HHHHHc---CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999988432211 111111 22567888887532 268
Q ss_pred cEEEEccCCCCccc--c----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccce-eccCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF--Y----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE-VYGDPLVHPQDESYWGN 166 (228)
Q Consensus 99 D~vi~~a~~~~~~~--~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~-~y~~~~~~~~~e~~~~~ 166 (228)
|++||+||...+.. . .+..+..++.|+.++..+++.+. +.+. ++|++||.. +++.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~------------- 147 (255)
T PRK06057 81 DIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS------------- 147 (255)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-------------
Confidence 99999998653211 1 12245678899998887776553 3444 899998863 4432
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|+..+.+.+.++.+ .++++++++||.+.++..
T Consensus 148 ---~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~ 192 (255)
T PRK06057 148 ---ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLL 192 (255)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchh
Confidence 112346999998888887776543 389999999999988753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-17 Score=133.39 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=117.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||++++++|++.| ++|++++|+..+..+....+.. ..++.++.+|+++... .+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999 9999999853322222222211 2357788999988632 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++.+..+++|+.+...+.+ .+++.+. +||++||...|..
T Consensus 86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~--------------- 150 (334)
T PRK07109 86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS--------------- 150 (334)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC---------------
Confidence 99999999865432211 2345667888777766554 4445544 8999999977632
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.+. ++++++++|+.+..+
T Consensus 151 -~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~ 195 (334)
T PRK07109 151 -IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTP 195 (334)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCc
Confidence 1223579999999999988876552 699999999998776
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=127.30 Aligned_cols=163 Identities=14% Similarity=0.073 Sum_probs=116.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++++++||||+|+||++++++|++.| ++|+++.|+.......... +. ...++.++..|+++... .
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G-~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 84 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEK-AKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG 84 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999 8998887743322221211 11 12356778889988632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHH----HHHHcC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~----~~~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||+||........ +..+..+++|+.++..+++ .+.+.+ .++|++||...+
T Consensus 85 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~--------------- 149 (261)
T PRK08936 85 TLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ--------------- 149 (261)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc---------------
Confidence 689999999975543222 2345678899887765544 445544 289999996432
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.+......|+.+|.+.+.+.+.++.++ +++++.++|+.+..+.
T Consensus 150 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~ 195 (261)
T PRK08936 150 -IPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPI 195 (261)
T ss_pred -CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCc
Confidence 122334579999999999888887654 8999999999998775
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=126.20 Aligned_cols=161 Identities=13% Similarity=0.065 Sum_probs=115.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|+++| +.|++..|+..+..+..... ..++.++..|+++... .++
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g-~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG-AIVGLHGTRVEKLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 88888877432222111111 2357788899887532 368
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||+||....... ..+++..++.|+.++..+++++.+ .+. +||++||...+... +
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------~ 147 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN--------------P 147 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC--------------C
Confidence 999999987543221 234567789999999888887642 333 89999997443211 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|...+.+++.++.+ .++++++++|+.+..+.
T Consensus 148 --~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~ 189 (245)
T PRK12936 148 --GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAM 189 (245)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCch
Confidence 1245999999988888887654 48999999999886653
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=128.47 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=116.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++++++||||+|+||++++++|+++| ++|++++|+..+.. ...... ..++.++++|+++... .++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKLA-SLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999 99999998432221 111111 2357788899987532 269
Q ss_pred cEEEEccCCCCccc-----ccCC----chhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF-----YKYN----PVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 99 D~vi~~a~~~~~~~-----~~~~----~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
|++||+||...... ..++ +++.+++|+.++..+++++.. .+.++|++||...+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 149 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYP------------ 149 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCC------------
Confidence 99999999643211 1111 345678899998888877653 3347999999865521
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+++.++.++ +++++.+.||.+..+
T Consensus 150 ----~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~ 191 (263)
T PRK06200 150 ----GGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTD 191 (263)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccC
Confidence 1223569999999999999998765 599999999998765
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=126.15 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=116.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
++++++||||+|+||++++++|++.| ++|++++|+.. ....+.. ...+..+++|+.+... .
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~----~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEG-ARVAVLDKSAA----GLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999 99999988432 2222221 2357788889987521 3
Q ss_pred CccEEEEccCCCCcc-cc----c----CCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEccceeccCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI-FY----K----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~-~~----~----~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
++|++||+||..... .. . +++++.+++|+.++..+++++... +.++|++||...+.
T Consensus 79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~----------- 147 (262)
T TIGR03325 79 KIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY----------- 147 (262)
T ss_pred CCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-----------
Confidence 689999999864211 11 1 124567899999999999887542 23788888875431
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ .++++.+.||.+..+.
T Consensus 148 -----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 148 -----PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 11223569999999999999998875 3899999999997653
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=126.62 Aligned_cols=163 Identities=17% Similarity=0.077 Sum_probs=115.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCc--------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP-------------- 93 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~-------------- 93 (228)
..+++++||||+|+||.+++++|++.| ++|++++|+..........+.. ..++.++..|+++.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 348999999999999999999999999 9999999954322221122211 12456666777531
Q ss_pred ccCCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 94 LLIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 94 ~~~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
...++|+|||+||...... .....+..+++|+.+...+++++. +.+. +||++||...+..
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~---------- 158 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQG---------- 158 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCC----------
Confidence 1236899999998753321 113346778999999888877663 4455 8999999754321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+++.++.++ ++++++++|+.+-++
T Consensus 159 ------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~ 201 (247)
T PRK08945 159 ------RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA 201 (247)
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence 1122469999999999999887765 799999999988554
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=123.81 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=111.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~vi~ 103 (228)
||+++||||+|+||+++++.|+++ ++|++++|+..+.. ..... ...++++++|+.+... .++|+|||
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~-~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERLD-ELAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHHH-HHHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 579999999999999999999987 78999999532211 11111 1357888999988532 15999999
Q ss_pred ccCCCCccccc----CCchhhHHhhHHHHHH----HHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 104 LACPASPIFYK----YNPVKTIKTNVIGTLN----MLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 104 ~a~~~~~~~~~----~~~~~~~~~n~~~~~~----l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
++|........ ++..+.++.|+.+... +++++++.+.++|++||...++. ..+...
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------~~~~~~ 141 (227)
T PRK08219 78 NAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRA----------------NPGWGS 141 (227)
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCc----------------CCCCch
Confidence 99875432211 2234457788888544 44445555568999999866532 122356
Q ss_pred HHHhHHHHHHHHHHHHHHh-C-CcEEEeeeccccCCC
Q 027129 176 YDEGKRVAETLMFDYHRQH-G-IEIRIARIFNTYGPR 210 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~-~-i~~~ilRp~~i~G~~ 210 (228)
|+.+|...+.+++.++.+. + ++++.++|+.+.++.
T Consensus 142 y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~ 178 (227)
T PRK08219 142 YAASKFALRALADALREEEPGNVRVTSVHPGRTDTDM 178 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchH
Confidence 9999999999988876543 4 899999999877653
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=127.05 Aligned_cols=165 Identities=16% Similarity=0.012 Sum_probs=118.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|++.| ++|+++.|+.....+....+.. ..++..+.+|+++... .+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999 9999999853322221111111 2357788899988632 37
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||........ ++.+..+++|+.++..+.+++. +.+ .++|++||....-.
T Consensus 87 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------- 152 (253)
T PRK05867 87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII-------------- 152 (253)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC--------------
Confidence 99999999875432221 2345667899999998888764 233 26899988743210
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
........|+.+|...+.+.+.++.++ |++++.+.||.+-.+.
T Consensus 153 ~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~ 198 (253)
T PRK05867 153 NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTEL 198 (253)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcc
Confidence 011122569999999999999998764 8999999999997664
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=124.79 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=115.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----------CCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~D~v 101 (228)
|++++||||+|+||++++++|++.| ++|++++|+..... .... ...+.+..+|+++... .++|+|
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v 75 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDT-ALQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLL 75 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCcchH-HHHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence 5789999999999999999999999 99999999644322 2222 2356677788887531 269999
Q ss_pred EEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHHHHc---C-CeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||++|...... ...+....++.|+.++..+++++... + .+++++||.. +.... .+..
T Consensus 76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----------~~~~ 142 (225)
T PRK08177 76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----------PDGG 142 (225)
T ss_pred EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----------CCCC
Confidence 99998753211 11233456788999998888876532 2 3688888752 22110 1222
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|...+.+++.++.+ ++++++.++||.+-.+.
T Consensus 143 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 143 EMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 3356999999999999998876 37999999999986654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=125.71 Aligned_cols=163 Identities=14% Similarity=0.056 Sum_probs=117.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~----------- 95 (228)
..+++++||||+|+||++++++|++.| ++|++++|+..+..+....+.. ..++..+..|+++...
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999999999 9999999954332222222211 2357788899988632
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ +++...+++|+.++..+.+.+ ++.+. +||++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ------------- 151 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC-------------
Confidence 3689999999975432222 234566788888777666654 34444 899999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ .|++++.+.||.+..+
T Consensus 152 ---~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 195 (265)
T PRK07062 152 ---PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESG 195 (265)
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccc
Confidence 1122356999999999999888765 4899999999998765
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=124.81 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=117.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++++|+||+|+||.+++++|++.| ++|+++ .|+.....+....+. ....+.++..|+++... .+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK 83 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 6799999999999999999999999 999998 774332222112111 12357889999988642 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||++|........ +..+..++.|+.++.++++.+.. .+. ++|++||...+...
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~-------------- 149 (247)
T PRK05565 84 IDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA-------------- 149 (247)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC--------------
Confidence 99999999876322111 23456788999998888777653 333 79999997654221
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+++.++.+. |+++++++|+.+..+.
T Consensus 150 --~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~ 192 (247)
T PRK05565 150 --SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEM 192 (247)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcc
Confidence 122469999999999888887653 8999999999986653
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=123.68 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=115.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
|+++||||+|+||++++++|++.| ++|+++.|......+.. .... ...++.++.+|+++... .++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDG-YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999999999 99999888322111111 1111 12468889999988532 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||++|........ ++++..++.|+.++..+.+. +++.+. ++|++||..... +
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~----------------~ 143 (242)
T TIGR01829 80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK----------------G 143 (242)
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------C
Confidence 9999999865432221 23456678899987775544 455555 899999974321 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
......|+.+|...+.+++.++.+ .+++++.++|+.+.++...
T Consensus 144 ~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~ 189 (242)
T TIGR01829 144 QFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVM 189 (242)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccc
Confidence 122356999999999888887654 4899999999999887543
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=124.55 Aligned_cols=155 Identities=17% Similarity=0.100 Sum_probs=113.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+|+++||||+|+||++++++|+++| ++|++++|+.....+.... ..+.++.+|+++... .++|
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 76 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQG-QPVIVSYRTHYPAIDGLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDGLR 76 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchhHHHHHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCcc
Confidence 4799999999999999999999999 9999999854332222221 236778889887532 2599
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC--C-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--A-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++||+||....... .++.+..+++|+.++..+.+.+. +.+ . ++|++||.....
T Consensus 77 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~---------------- 140 (236)
T PRK06483 77 AIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK---------------- 140 (236)
T ss_pred EEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------------
Confidence 99999987533221 23346678889998887766554 333 3 799999864321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeecccc
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTY 207 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~ 207 (228)
+......|+.+|...+.+++.++.++ +++++++.||.+.
T Consensus 141 ~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~ 181 (236)
T PRK06483 141 GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALIL 181 (236)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcee
Confidence 11223569999999999999998875 5999999999874
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-16 Score=126.39 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=117.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||.+++++|++.| ++|++++|+..........+.. ..++.++.+|+++... .+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 9999999853322221111111 2356778899987531 25
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|++||+||....... .+++...+++|+.++.++++++.. .+.+||++||...+. +
T Consensus 87 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------------~ 150 (264)
T PRK07576 87 IDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------------P 150 (264)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------------C
Confidence 8999999975432211 123456678999999999887653 234899999975431 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+++.++.+ .+++++.++|+.+.+.
T Consensus 151 ~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t 193 (264)
T PRK07576 151 MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGT 193 (264)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCc
Confidence 222357999999999999998765 3799999999998753
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=123.52 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=117.6
Q ss_pred CCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCC--------Cchh--hhhhc--CCCceEEEeccCCCccc--
Q 027129 32 NMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDN--LRKWI--GHPRFELIRHDVTEPLL-- 95 (228)
Q Consensus 32 ~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~--~~~~~--~~~~~~~~~~d~~~~~~-- 95 (228)
+++++||||+| .||.+++++|++.| ++|+++.|+... ..+. +.... ....+.++..|+++...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 83 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKG-IDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPN 83 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcC-CcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 68999999995 79999999999999 999999885211 0110 11111 12358889999988532
Q ss_pred ----------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCC
Q 027129 96 ----------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLV 156 (228)
Q Consensus 96 ----------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~ 156 (228)
.++|+|||+||........ ++.+..+++|+.++..+++++... +. ++|++||...+.
T Consensus 84 ~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---- 159 (256)
T PRK12748 84 RVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG---- 159 (256)
T ss_pred HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC----
Confidence 3689999999875332221 234567899999999999887532 23 899999986553
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 157 ~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|.+.+.+++.++.+ .+++++.++||.+..+
T Consensus 160 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~ 203 (256)
T PRK12748 160 ------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTG 203 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCC
Confidence 2222356999999999999988765 4899999999988765
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=126.82 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=112.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~D~ 100 (228)
|+++||||+|.||++++++|+++| ++|++++|+.....+...++.....+.++++|+++.. ..++|+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 689999999999999999999999 9999999853322222222222235778899998753 236999
Q ss_pred EEEccCCCCcc---ccc---CCchhhHHhhHHHHHHHHHH----HH-HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPI---FYK---YNPVKTIKTNVIGTLNMLGL----AK-RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 101 vi~~a~~~~~~---~~~---~~~~~~~~~n~~~~~~l~~~----~~-~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+||+||..... ... .+....+.+|+.++..+.+. +. +.+. +||++||...+.
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~---------------- 143 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE---------------- 143 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------------
Confidence 99999964321 111 12234456677666554433 32 2233 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+...|+.+|...+.+.+.++.++ |++++.+.||.+-.+.
T Consensus 144 ~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~ 188 (259)
T PRK08340 144 PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG 188 (259)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence 22234579999999999999998864 7999999999987664
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=122.34 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=117.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----------CCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~D~v 101 (228)
|++++||||+|+||++++++|++.| ++|++++|+... ...+.. ..++++.+|+++... .++|++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G-~~v~~~~r~~~~----~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v 74 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADG-WRVIATARDAAA----LAALQA-LGAEALALDVADPASVAGLAWKLDGEALDAA 74 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCC-CEEEEEECCHHH----HHHHHh-ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence 5799999999999999999999999 999999985322 222211 245678889887632 158999
Q ss_pred EEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccce-eccCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSE-VYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 102 i~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~-~y~~~~~~~~~e~~~~~~~~~ 170 (228)
||++|...... ..++++..++.|+.++..+++++.+ .+.+++++||.. .++.. +.
T Consensus 75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~ 140 (222)
T PRK06953 75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TG 140 (222)
T ss_pred EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cC
Confidence 99998753221 2234567889999999999988764 123788988864 34321 11
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh-CCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~-~i~~~ilRp~~i~G~~ 210 (228)
.+...|+.+|...+.+++.++.++ +++++.++|+.+..+.
T Consensus 141 ~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~ 181 (222)
T PRK06953 141 TTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDM 181 (222)
T ss_pred CCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCC
Confidence 122359999999999999987765 7899999999998764
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=124.49 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=115.4
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-C---CCceEEEeccCCCccc------------CC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-G---HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++||||+|+||+++++.|+++| ++|++++|......+...... . ...+..+++|+++... .+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQG-AKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 48999999999999999999999 999999985322222222111 1 1224457788887532 36
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHH----HHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVI----GTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~----~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||........ ++....+++|+. .+..++.++++.+. +||++||...+..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~--------------- 144 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA--------------- 144 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC---------------
Confidence 89999999876533221 233556778888 66777777777665 8999999876532
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.+. +++++.++|+.+.++..
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~ 191 (251)
T PRK07069 145 -EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIV 191 (251)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcch
Confidence 1223569999999999999887652 48899999999988754
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=124.20 Aligned_cols=160 Identities=13% Similarity=0.039 Sum_probs=116.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hh----hhhc-CCCceEEEeccCCCccc-------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NL----RKWI-GHPRFELIRHDVTEPLL------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~----~~~~-~~~~~~~~~~d~~~~~~------- 95 (228)
.+++++||||+|+||++++++|+++| ++|++++|+...... .+ ..+. ...++.++++|+++...
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 36899999999999999999999999 999999986543211 11 1111 12357788899988632
Q ss_pred -----CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC-CeEEEEccceeccCCCCCCCCC
Q 027129 96 -----IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||........ ++.+..+++|+.++..+++++.. .+ .++|++||......
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~-------- 155 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP-------- 155 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc--------
Confidence 2699999999975433222 23456788999999999998753 22 37899988532110
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeecc
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFN 205 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~ 205 (228)
....+.+.|+.+|++.|.+++.++.++ +++++.+.|+.
T Consensus 156 ------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~ 196 (273)
T PRK08278 156 ------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRT 196 (273)
T ss_pred ------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Confidence 111344679999999999999998764 89999999984
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=130.59 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=119.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||++++++|.+.| ++|+++.|+.....+....+.. ...+..+..|+++... .+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999999 9999999954332222222211 2356778889987532 36
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++.++.+++|+.++.++.+++ ++.+. ++|++||...+..
T Consensus 85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~--------------- 149 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAA--------------- 149 (330)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCC---------------
Confidence 89999999975443222 234567899999998877765 34444 8999999765421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+.+.++.+ .+++++.+.|+.+..+.
T Consensus 150 -~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~ 194 (330)
T PRK06139 150 -QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPG 194 (330)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcc
Confidence 112357999999988888888765 27999999999998875
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=126.77 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=112.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc--CCCceEEEeccCCCcc------------c
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI--GHPRFELIRHDVTEPL------------L 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~--~~~~~~~~~~d~~~~~------------~ 95 (228)
++|+++||||+++||++++++|++.| ++|+++.|+.....+.. ..+. ...++.+++.|+++.. +
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSG-VNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999 99988866332221111 1111 1236788999999863 2
Q ss_pred CCccEEEEccCCCCcc------cc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI------FY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~------~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.++|++||+||..... .. ..+....++.|+.++..+.+.+ ++.+. +||++||...+.
T Consensus 86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 157 (260)
T PRK08416 86 DRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV-------- 157 (260)
T ss_pred CCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc--------
Confidence 3689999999864211 11 1223456677777766655543 33444 899999974321
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+++.++.++ |++++.+.||.+-.+
T Consensus 158 --------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~ 201 (260)
T PRK08416 158 --------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTD 201 (260)
T ss_pred --------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCh
Confidence 11223469999999999999998874 899999999988654
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=129.37 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=117.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCcc----------c--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPL----------L-- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~----------~-- 95 (228)
.++.++||||+|+||++++++|.+.| ++|++++|+..+..+...++.. ...+..+..|+++.. .
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G-~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG-LNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 37899999999999999999999999 9999999954432222222211 235666777876421 1
Q ss_pred CCccEEEEccCCCCcc--cc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI--FY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~--~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||...+. .. .++.+..+++|+.++..+.+++. +.+. ++|++||...+...
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~---------- 200 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP---------- 200 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC----------
Confidence 1466999999975421 11 12345678999999999888754 3444 89999998654210
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.++ |++++++.||.+-.+.
T Consensus 201 ----~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~ 245 (320)
T PLN02780 201 ----SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKM 245 (320)
T ss_pred ----CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCc
Confidence 01123679999999999999998764 8999999999987763
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=141.90 Aligned_cols=165 Identities=15% Similarity=0.084 Sum_probs=122.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+...... ...++.++.+|+++... .
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAG-ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 347899999999999999999999999 999999995432222222221 12467888999998632 2
Q ss_pred CccEEEEccCCCCccccc------CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||........ .+....+++|+.++.++.+.+ ++.+. +||++||...|..
T Consensus 448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 515 (657)
T PRK07201 448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN------------ 515 (657)
T ss_pred CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC------------
Confidence 699999999975322111 234577899999988887664 34454 8999999877642
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+.+.++.+ +++++++++||.+..+..
T Consensus 516 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~ 560 (657)
T PRK07201 516 ----APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMI 560 (657)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCccccc
Confidence 112356999999999999998765 489999999999987643
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.6e-16 Score=123.17 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=117.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVD 99 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~D 99 (228)
.+++++||||+|+||++++++|+++| ++|++++|+.....+....+....++.++.+|+++... .++|
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 36899999999999999999999999 99999999533222222222123468889999988642 3589
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++||+||........ ++....+++|+.++.++++.+.. .+. ++|++||...+. +.
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 146 (263)
T PRK09072 83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI----------------GY 146 (263)
T ss_pred EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------------CC
Confidence 999999875432211 23356778999999998887753 333 789888874321 11
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.....|+.+|...+.+++.++.+ ++++++++.||.+..+
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~ 188 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA 188 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence 12356999999999999888765 4799999999988665
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=123.95 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=117.0
Q ss_pred EEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccEEEEccCC
Q 027129 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHLACP 107 (228)
Q Consensus 36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~vi~~a~~ 107 (228)
+||||+|+||++++++|++.| ++|+++.|+.....+.........++.++.+|+++... .++|++||++|.
T Consensus 1 lItGas~~iG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEG-ARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 599999999999999999999 99999999532221111111112467888999988632 258999999987
Q ss_pred CCcccc----cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 108 ASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 108 ~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
...... .++.+..++.|+.++..+.++....+. +||++||...|. +..+.+.|+.+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~----------------~~~~~~~Y~~sK~a 143 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR----------------PSASGVLQGAINAA 143 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC----------------CCCcchHHHHHHHH
Confidence 543222 133567789999999999996655444 899999987663 22234679999999
Q ss_pred HHHHHHHHHHHh-CCcEEEeeeccccCC
Q 027129 183 AETLMFDYHRQH-GIEIRIARIFNTYGP 209 (228)
Q Consensus 183 ~e~~~~~~~~~~-~i~~~ilRp~~i~G~ 209 (228)
.+.+.+.++.+. +++++.++|+.+-.+
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~ 171 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTP 171 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccH
Confidence 999999998775 689999999987654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=124.72 Aligned_cols=161 Identities=20% Similarity=0.126 Sum_probs=115.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~D 99 (228)
|+++||||+|+||.+++++|++.| ++|+++.|+.....+....+.. ...+..+.+|+++... .++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 579999999999999999999999 9999998853222222222221 2357788899988642 2589
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|||++|....... ..+.+..+++|+.++..+++++. +.+ .++|++||......
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 143 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEG---------------- 143 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCC----------------
Confidence 99999987433221 12345678899998887766553 333 37999998654311
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+++.++.++ ++++++++|+.+..+.
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~ 187 (254)
T TIGR02415 144 NPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM 187 (254)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence 1123569999999999999887664 7999999999886654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=125.99 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=112.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC---------------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------------- 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------- 96 (228)
||+++||||+|+||++++++|+++| ++|++++|...+..+..... ...++.++++|+++....
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKG-THVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDN 78 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcC-CEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence 5789999999999999999999999 99999998542221111111 124678889999876321
Q ss_pred -CccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHH----HHcC-C-eEEEEccceeccCCCCCCCCCCCC
Q 027129 97 -EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-A-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 97 -~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
+.+++||++|...+.. ..++....+++|+.++..+++.+ ++.+ . +||++||...+
T Consensus 79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~------------- 145 (251)
T PRK06924 79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK------------- 145 (251)
T ss_pred CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc-------------
Confidence 1227899998654321 11234456778888866665544 4433 2 79999997543
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
.+..+...|+.+|...+.+++.++.+ ++++++.++||.+-.+
T Consensus 146 ---~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 146 ---NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN 192 (251)
T ss_pred ---CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence 23344567999999999999988765 3799999999988654
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-16 Score=124.22 Aligned_cols=161 Identities=15% Similarity=0.061 Sum_probs=113.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC--CCceEEEeccCCCccc--------------
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG--HPRFELIRHDVTEPLL-------------- 95 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~--~~~~~~~~~d~~~~~~-------------- 95 (228)
++++||||+|+||++++++|+++| ++|+++.|+.....+.. ..+.. ......+.+|+++...
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEG-YRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCC-CeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 579999999999999999999999 99998876432222222 22211 1245568889998631
Q ss_pred --CCccEEEEccCCCCccccc----C-----------CchhhHHhhHHHHHHHHHHHHHc---------C--CeEEEEcc
Q 027129 96 --IEVDQIYHLACPASPIFYK----Y-----------NPVKTIKTNVIGTLNMLGLAKRV---------G--ARILLTST 147 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~----~-----------~~~~~~~~n~~~~~~l~~~~~~~---------~--~r~i~~Ss 147 (228)
.++|++||+||...+.... . +....+++|+.++..+.+++... + .++|++||
T Consensus 81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s 160 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD 160 (267)
T ss_pred ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence 2699999999975432111 1 13456899999999888765321 1 15777777
Q ss_pred ceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 148 ~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.... .+......|+.+|...+.+++.++.+ +|+++++++||.+..+.
T Consensus 161 ~~~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~ 210 (267)
T TIGR02685 161 AMTD----------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPD 210 (267)
T ss_pred hhcc----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcc
Confidence 6432 12333457999999999999998876 58999999999987653
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-16 Score=122.39 Aligned_cols=155 Identities=18% Similarity=0.112 Sum_probs=111.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------------CCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IEVD 99 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------~~~D 99 (228)
++++||||+|+||+++++.|++.| ++|+++.|+..+ .+.... .+++.+++|+.+... ..+|
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~~~r~~~~----~~~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~ 76 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLAACRKPDD----VARMNS-LGFTGILLDLDDPESVERAADEVIALTDNRLY 76 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHH----hHHHHh-CCCeEEEeecCCHHHHHHHHHHHHHhcCCCCe
Confidence 689999999999999999999999 999999884322 222111 246777888876421 2579
Q ss_pred EEEEccCCCCccc----ccCCchhhHHhhHHHHHHH----HHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
.+||++|...... ..+..+..++.|+.++.++ ++.+++.+. ++|++||...+. +.
T Consensus 77 ~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~ 140 (256)
T PRK08017 77 GLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------ST 140 (256)
T ss_pred EEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------CC
Confidence 9999998654321 1123456788999888775 555566665 899999974331 11
Q ss_pred CCCChHHHhHHHHHHHHHHHHH---HhCCcEEEeeeccccCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGP 209 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~---~~~i~~~ilRp~~i~G~ 209 (228)
...+.|+.+|...|.+.+.++. ..++++++++|+.+..+
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~ 182 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTR 182 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccc
Confidence 2235699999999998876543 35899999999887654
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-16 Score=123.39 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=116.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+++++||||+|+||+.+++.|+++| ++|++++|+..+..+....... ..++.+++.|+++... .+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 8999998854332222222211 2457788999887532 25
Q ss_pred ccEEEEccCCCCccc-------------ccCCchhhHHhhHHHHHHHHHHHH----Hc-C-CeEEEEccceeccCCCCCC
Q 027129 98 VDQIYHLACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAK----RV-G-ARILLTSTSEVYGDPLVHP 158 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~----~~-~-~r~i~~Ss~~~y~~~~~~~ 158 (228)
+|+|||++|...... ..+.....++.|+.++..+.+.+. +. . .++|++||...|+..
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~---- 158 (253)
T PRK08217 83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM---- 158 (253)
T ss_pred CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC----
Confidence 899999998643211 112234567889988877765432 32 2 269999998766421
Q ss_pred CCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 159 ~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+...|+.+|...+.+++.++.+ ++++++.++|+.+.++..
T Consensus 159 -------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~ 201 (253)
T PRK08217 159 -------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMT 201 (253)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc
Confidence 2356999999999999998765 489999999999988753
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=141.14 Aligned_cols=163 Identities=20% Similarity=0.133 Sum_probs=120.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+++++||||+|+||++++++|++.| ++|++++|+..........+.....+..+.+|+++... .++
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 89999999543322222222212367888999988632 269
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||+||........ ......+++|+.+...+++++. +.+ .+||++||...+.
T Consensus 500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~---------------- 563 (681)
T PRK08324 500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN---------------- 563 (681)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC----------------
Confidence 9999999975433222 2345678899999999977654 433 3899999976542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeecccc-CCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTY-GPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~-G~~ 210 (228)
+....+.|+.+|...+.+++.++.++ |+++++++|+.+| +++
T Consensus 564 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~ 609 (681)
T PRK08324 564 PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSG 609 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCc
Confidence 11223579999999999999998764 6999999999998 654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-16 Score=123.53 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=119.0
Q ss_pred cCCCEEEEecCcc-hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~---------- 95 (228)
..+++++||||+| .||+++++.|++.| ++|++++|......+....+. ...++..+++|+++...
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEG-ARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3479999999997 79999999999999 999998885433222222221 12357888999987531
Q ss_pred --CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||++|........ ++....++.|+.++..+++++. ..+ .++|++||...+.
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~----------- 162 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR----------- 162 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence 3689999999965432222 2345567889999988877654 233 3788888864331
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|.+.+.+.+.++.+ +++++++++|+.++.+..
T Consensus 163 -----~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~ 208 (262)
T PRK07831 163 -----AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFL 208 (262)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccc
Confidence 2223356999999999999999876 589999999999988753
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=125.38 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=114.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------CCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~~ 98 (228)
|+++||||+|+||++++++|++.| ++|++++|+.....+....+.. ...+.++.+|+.+... .++
T Consensus 1 k~vlItGas~giG~~la~~la~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQG-AELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999999 9999998853322222222211 1224556788887532 358
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||++|....... .++.+..+++|+.++..+++++. +.+ .+||++||...+.
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------------- 143 (272)
T PRK07832 80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV---------------- 143 (272)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------
Confidence 999999986533221 23346778999999999999864 222 3899999975431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +++++++++||.+.++.
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~ 188 (272)
T PRK07832 144 ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL 188 (272)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 1112346999999888888877643 58999999999998874
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=136.81 Aligned_cols=161 Identities=15% Similarity=0.054 Sum_probs=120.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+++++||||+|+||++++++|.++| ++|++++|+..+..+....+.. ...+.++.+|+++... .++
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 393 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREG-AEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP 393 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999 9999999954322222121111 2357888999998642 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++....+++|+.++.++++++ ++.+ .+||++||...|..
T Consensus 394 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------------- 458 (582)
T PRK05855 394 DIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP--------------- 458 (582)
T ss_pred cEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC---------------
Confidence 9999999986533222 334567789999999888864 3333 38999999987642
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +|++++++.||.|-.+
T Consensus 459 -~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 -SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 223467999999999999888765 4899999999988654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=122.57 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=118.0
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+ +.||++++++|+++| ++|++..|+ ....+...+.. ...+..+++|+++... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G-~~Vi~~~r~-~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQG-ATVIYTYQN-DRMKKSLQKLV-DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEecCc-hHHHHHHHhhc-cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 47899999999 799999999999999 999999884 22222222222 2357788999998632 3
Q ss_pred CccEEEEccCCCCcc--------cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||...+. ...++++..+++|+.++..+.+++... +.++|++||.....
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------- 149 (252)
T PRK06079 83 KIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------------- 149 (252)
T ss_pred CCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc-------------
Confidence 699999999975321 111234567889999998888876542 23799999865321
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|+..+.+.+.++.+ +|++++.+.||.|-.+.
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~ 194 (252)
T PRK06079 150 ---AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLA 194 (252)
T ss_pred ---cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccc
Confidence 1122356999999999999999876 48999999999997653
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=136.30 Aligned_cols=162 Identities=18% Similarity=0.191 Sum_probs=121.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|.++| ++|++++|+..... ...... ..++..+..|+++... .+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRDAEGAK-KLAEAL-GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHh-CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999 99999998432211 111111 2356678899988632 25
Q ss_pred ccEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHHHc--C-CeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|++|||||..... . ..++++..+++|+.++..+.+++... + .+||++||...+. +
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 407 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------A 407 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------C
Confidence 89999999975321 1 11334677899999999998876543 2 3899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|+..+.+.+.++.++ |++++.+.||.+..+.
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 451 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPA 451 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCch
Confidence 2234579999999999999988764 8999999999998764
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=119.65 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=113.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc---------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~D~vi~ 103 (228)
|+++||||+|+||+++++.|.++| ++|++++|+ .+..........+..+++|+++... .++|++||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g-~~v~~~~r~----~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~ 75 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDG-HKVTLVGAR----RDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVN 75 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence 579999999999999999999999 999999884 2333222222245678889987632 25899999
Q ss_pred ccCCCCc----c--c---ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASP----I--F---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 104 ~a~~~~~----~--~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++|.... . . ..++..+.+++|+.++..+++++... +.++|++||... +
T Consensus 76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~------------------~-- 135 (223)
T PRK05884 76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP------------------P-- 135 (223)
T ss_pred CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC------------------C--
Confidence 9985321 0 0 12345677899999999999987542 238999998630 1
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....|+.+|+..+.+.+.++.+ +|++++.+.||.+..+
T Consensus 136 ~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 136 AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 1246999999999999998875 4899999999998765
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-16 Score=123.70 Aligned_cols=164 Identities=13% Similarity=0.057 Sum_probs=119.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCe-EEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||+|+||+.++++|++.| ++ |+++.|+..........+.. ...+.++..|+++... .
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G-~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERG-AAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 77 99998853322211111111 2357778899987532 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||++|....... .+..+..++.|+.++.++++++.+ .+ .++|++||...++..
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~------------ 151 (260)
T PRK06198 84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ------------ 151 (260)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC------------
Confidence 68999999987543221 122356689999999998877643 22 279999998766421
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...|.+.+.++.++ +++++.++|+.++++..
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~ 195 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGE 195 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcch
Confidence 123569999999999999887764 69999999999998753
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=120.63 Aligned_cols=158 Identities=17% Similarity=0.121 Sum_probs=115.4
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCccc------------CCccE
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
++|||++|+||++++++|+++| ++|++++|+.....+.. ..... ...+.++.+|+++... ..+|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEG-AKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999 99999988542221111 11111 1247788999987642 25899
Q ss_pred EEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccce-eccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE-VYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~-~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|||++|....... ....+..++.|+.++..+++.+.+ .+. +|+++||.. .|+..
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~---------------- 143 (239)
T TIGR01830 80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNA---------------- 143 (239)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCC----------------
Confidence 9999997543211 133467788999999999998764 333 899999964 44321
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.|+.+|...+.+++.++.+ .++++++++|+.+.++.
T Consensus 144 -~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~ 185 (239)
T TIGR01830 144 -GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDM 185 (239)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChh
Confidence 2256999999999998888765 48999999999987753
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=120.65 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=115.7
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------CCccE
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
++||||+|+||.+++++|++.| ++|+++.|......+.. ..+. ...++.+++.|+++... .++|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADG-FEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5899999999999999999999 89998887433222222 1111 12458889999988632 25899
Q ss_pred EEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHH-----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+||++|...... ..+++...++.|+.++..+++++. +.+. +||++||...+.. .
T Consensus 80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~----------------~ 143 (239)
T TIGR01831 80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMG----------------N 143 (239)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccC----------------C
Confidence 999998754322 223456778999999999988652 2333 8999999753311 1
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
.....|+.+|...+.+.+.++.+ .|++++.++|+.+.++...
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 188 (239)
T TIGR01831 144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLA 188 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccch
Confidence 12346999999999988888765 4899999999999877543
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=120.88 Aligned_cols=161 Identities=20% Similarity=0.188 Sum_probs=116.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---hhhhhhcCCCceEEEeccCCCcc------------c
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL------------L 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~------------~ 95 (228)
.+|.|+||||+++||.+++.+|.+.| .+++.+.|...... +.+++.....++..+++|+++.. +
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G-~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRG-AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC-CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999 77777777444322 22333333336899999999863 3
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcC-CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~-~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++|||||........ .+....+++|+.++..+.+++ ++.+ .+||.+||...+-
T Consensus 90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~-------------- 155 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM-------------- 155 (282)
T ss_pred CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc--------------
Confidence 4799999999987632222 123457899999998887764 4555 4999999996542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHhCCcE---E-EeeeccccC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI---R-IARIFNTYG 208 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~---~-ilRp~~i~G 208 (228)
+....+.|+.||.+.+.+.+.++.+..-.. . ++-||.|-.
T Consensus 156 --~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~T 199 (282)
T KOG1205|consen 156 --PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIET 199 (282)
T ss_pred --CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceee
Confidence 223334899999999999999998863222 1 367776643
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=122.77 Aligned_cols=163 Identities=12% Similarity=0.008 Sum_probs=116.2
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||++ .||++++++|++.| ++|++..|+.. ..+....+... .....+++|+++...
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~G-a~V~~~~r~~~-~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQG-AELAFTYQGEA-LGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCC-CEEEEecCchH-HHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 3478999999997 99999999999999 99999887421 11222222111 123467899998632
Q ss_pred -CCccEEEEccCCCCcc--------cccCCchhhHHhhHHHHHHHHHHHHH---cCCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||..... ...+++...+++|+.++..+++++.. .+.++|++||.....
T Consensus 83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~----------- 151 (271)
T PRK06505 83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR----------- 151 (271)
T ss_pred hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-----------
Confidence 3699999999975321 11233456788999999888776542 223899999875321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |++++.|.||.+-.+.
T Consensus 152 -----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~ 196 (271)
T PRK06505 152 -----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLA 196 (271)
T ss_pred -----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence 11123569999999999999998764 8999999999987653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=124.72 Aligned_cols=158 Identities=17% Similarity=0.076 Sum_probs=114.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCcc-----------cC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPL-----------LI 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~-----------~~ 96 (228)
.++|+++||||+|+||++++++|++.| .+|++.++......+.. ..+.. ..++.++++|+++.. +.
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~G-a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLG-ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 447999999999999999999999999 89999887433222222 22211 246778899998752 23
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----c----C----CeEEEEccceeccCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----V----G----ARILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~----~----~r~i~~Ss~~~y~~~~~~~~~ 160 (228)
++|++||+||....... ..++...+++|+.++..+++++.. . + .++|++||...+..
T Consensus 89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 161 (306)
T PRK07792 89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG------- 161 (306)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC-------
Confidence 68999999997654322 233456789999999999887532 1 1 27999999754321
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeec
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF 204 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~ 204 (228)
......|+.+|...+.+.+.++.+ +|++++++.|+
T Consensus 162 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 162 ---------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 112346999999999999988775 58999999997
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=119.95 Aligned_cols=162 Identities=13% Similarity=0.021 Sum_probs=115.6
Q ss_pred cCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc---------
Q 027129 30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--------- 95 (228)
..+|+++||||+ +.||++++++|.++| ++|++..|... ..+.++++ ....++..++.|+++...
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGER-LEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCccc-chHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence 347899999997 899999999999999 99999887422 22222222 222457788999998632
Q ss_pred ---CCccEEEEccCCCCc-----cccc---CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASP-----IFYK---YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~-----~~~~---~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++|||||.... .... +.....+++|+.++..+.+++... +.+||++||....-
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 153 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER--------- 153 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc---------
Confidence 369999999986531 1111 223456788888888777765432 23899999975321
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |++++.+.||.+..+
T Consensus 154 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~ 197 (257)
T PRK08594 154 -------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTL 197 (257)
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCH
Confidence 11223569999999999999988754 899999999998765
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=120.62 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=117.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCcc--------cCCccE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL--------LIEVDQ 100 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~--------~~~~D~ 100 (228)
++|+++||||+|+||++++++|++.| ++|++++|+..+..+....+.. ..++.++..|+++.. ..++|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 47899999999999999999999999 8999999854322221111211 235778889998753 236999
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+||++|........ ++....+++|+.++..+.+++ ++.+. ++|++||.... .+..
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~----------------~~~~ 148 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE----------------NPDA 148 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc----------------CCCC
Confidence 99999875322221 234566789999988888765 34433 79999886432 1222
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....|+.+|...+.+.+.++.+ +|++++.+.||.+..+
T Consensus 149 ~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 149 DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 3456899999999999988764 4899999999998765
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=115.85 Aligned_cols=184 Identities=20% Similarity=0.211 Sum_probs=134.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~v 101 (228)
....+|||||+-|++|..++..|... |...|++-+...+... .. ..-.++..|+.|... .++|.+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~--V~-----~~GPyIy~DILD~K~L~eIVVn~RIdWL 114 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN--VT-----DVGPYIYLDILDQKSLEEIVVNKRIDWL 114 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh--hc-----ccCCchhhhhhccccHHHhhccccccee
Confidence 33569999999999999999988876 6456666555322221 11 122345555555422 379999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
||+.+..+ ...+.+.....++|+.+..|+++.+++++.++...|+++.||..+...-+.+ .....|...||.||.
T Consensus 115 ~HfSALLS-AvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPd----ltIQRPRTIYGVSKV 189 (366)
T KOG2774|consen 115 VHFSALLS-AVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPD----LTIQRPRTIYGVSKV 189 (366)
T ss_pred eeHHHHHH-HhcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCCC----eeeecCceeechhHH
Confidence 99987654 2345666677899999999999999999999999999999997765433332 145678889999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHH
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQ 225 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~ 225 (228)
.+|.+-+.+.+++|+++.++|.+.+++....... .+.+..|-.+
T Consensus 190 HAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~A 235 (366)
T KOG2774|consen 190 HAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDA 235 (366)
T ss_pred HHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHH
Confidence 9999999999999999999999999987554432 3455544443
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=135.84 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=114.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
.+|+++||||+|+||++++++|++.| ++|++++|+..........+. ....+..+++|+++...
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEG-AHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999 999999985332221111211 22356778999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHH----HHHHcC--CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~----~~~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ .+....+++|+.+...+.+ .+++.+ .+||++||...+.
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~------------- 558 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY------------- 558 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC-------------
Confidence 2699999999975432222 2234566788887766654 344444 3899999975431
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeecccc
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY 207 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~ 207 (228)
+......|+.+|...+.+++.++.+ +|++++.++|+.|+
T Consensus 559 ---~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~ 600 (676)
T TIGR02632 559 ---AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVL 600 (676)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCcee
Confidence 1122357999999999999998876 47999999999887
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=122.14 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=113.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC---------CCCchhhhhhcC-CCceEEEeccCCCcc------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKWIG-HPRFELIRHDVTEPL------ 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~d~~~~~------ 94 (228)
++++++||||+++||++++++|++.| ++|++++|.. ....+....+.. ...+.++..|+++..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G-~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 47899999999999999999999999 9999988753 111111112211 235677889998853
Q ss_pred ------cCCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----Hc---C----CeEEEEccceeccC
Q 027129 95 ------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RV---G----ARILLTSTSEVYGD 153 (228)
Q Consensus 95 ------~~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~---~----~r~i~~Ss~~~y~~ 153 (228)
+.++|++||+||....... .++++..+++|+.++..+.+++. +. + .+||++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~- 162 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ- 162 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc-
Confidence 2369999999997543221 23356778999999988877653 21 1 2799999975431
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeec
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF 204 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~ 204 (228)
+......|+.+|...+.+.+.++.+ +|++++.|.|+
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg 201 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA 201 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC
Confidence 1122356999999999999998776 58999999998
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-15 Score=118.94 Aligned_cols=162 Identities=15% Similarity=0.020 Sum_probs=115.7
Q ss_pred cCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+ +.||++++++|+++| ++|++.+|+... .+...++.. ......+++|+++...
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKA-RPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhh-HHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence 347999999998 599999999999999 999999885322 111222211 1234577889988632
Q ss_pred -CCccEEEEccCCCCcc--------cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++|||||..... ...++++..+++|+.++..+.+.+... +.++|++||.....
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~----------- 154 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK----------- 154 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc-----------
Confidence 3699999999865321 111335677899999999998876432 23799999864321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.+|...+.+.+.++.+ +|++++.+.||.+-.+
T Consensus 155 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~ 198 (258)
T PRK07533 155 -----VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTR 198 (258)
T ss_pred -----CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCCh
Confidence 1122356999999999999998876 4899999999998665
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=122.16 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=118.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+++++||||+++||.+++++|++.|.++|+++.|+..+..+....+. ....+.++.+|+++... .++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 82 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL 82 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999999999999986789898885332222222221 12356778899987632 369
Q ss_pred cEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHH----HHcC---CeEEEEccceeccCCCCC----CCCCC
Q 027129 99 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYGDPLVH----PQDES 162 (228)
Q Consensus 99 D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~r~i~~Ss~~~y~~~~~~----~~~e~ 162 (228)
|++||+||...+.. ..+..+..+++|+.++..+.+.+ ++.+ .|||++||...+...... +....
T Consensus 83 D~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~ 162 (314)
T TIGR01289 83 DALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLG 162 (314)
T ss_pred CEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccccc
Confidence 99999999743221 12334667899999987776654 3442 389999998765321100 00000
Q ss_pred CC-------------CCCCCCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 163 YW-------------GNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 163 ~~-------------~~~~~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
+. ....+..+...|+.||.+...+.+.++++ .++.++.+.||.|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T 226 (314)
T TIGR01289 163 DLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADT 226 (314)
T ss_pred ccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCC
Confidence 00 00123345567999999988888888764 3799999999998643
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=119.93 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=115.9
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCcc------------c
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------L 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~------------~ 95 (228)
.+|+++||||+ +.||++++++|+++| ++|++..|. ....+...++... .....++.|+++.. +
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G-~~V~l~~r~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAG-AELAFTYQG-DALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCc-hHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence 36899999997 899999999999999 999888773 2122223222211 23456889998863 2
Q ss_pred CCccEEEEccCCCCcc-----c---ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-----F---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-----~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||..... . ..++.+..+++|+.++..+++++... +.++|++||.....
T Consensus 87 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------ 154 (272)
T PRK08159 87 GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK------------ 154 (272)
T ss_pred CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc------------
Confidence 3699999999975321 1 11335677899999999999876542 23899999864321
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+..+
T Consensus 155 ----~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 198 (272)
T PRK08159 155 ----VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTL 198 (272)
T ss_pred ----CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCH
Confidence 1122356999999999999998876 4899999999998654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-15 Score=118.96 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=116.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-----------~~~D 99 (228)
+|+++|||| |+||++++++|. +| ++|++++|+..+..+....+.. ..++.++++|+++... .++|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 468899997 799999999996 78 9999999854322222222211 2357788999988632 3699
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCC-----CCCCCC---CCCCCC-
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPL-----VHPQDE---SYWGNV- 167 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~-----~~~~~e---~~~~~~- 167 (228)
++||+||... ...++...+++|+.++.++++++... +.++|++||........ ...+.. .+....
T Consensus 79 ~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PRK06940 79 GLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP 155 (275)
T ss_pred EEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence 9999999643 23456788999999999999987643 23567777765432110 000000 000000
Q ss_pred --CC---CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 --NP---IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 --~~---~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.+ ......|+.||+..+.+.+.++.++ |++++.+.||.+..+.
T Consensus 156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~ 206 (275)
T PRK06940 156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPL 206 (275)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCcc
Confidence 01 0134679999999999999887653 8999999999997763
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=120.59 Aligned_cols=160 Identities=15% Similarity=0.029 Sum_probs=115.4
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
++|+++||||+ +.||++++++|.++| ++|++..|+.. ..+....... ... ..+++|+++...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G-~~Vil~~r~~~-~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQG-AELAFTYLNEA-LKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEecCHH-HHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 47999999997 799999999999999 99999888521 1222222211 112 567889998632
Q ss_pred -CCccEEEEccCCCCc----c----cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASP----I----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~----~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...++.+..+++|+.++..+.+++... +.+||++||.....
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~----------- 149 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK----------- 149 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-----------
Confidence 369999999997432 1 111334667899999999888866531 23899999864321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+..+
T Consensus 150 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 193 (274)
T PRK08415 150 -----YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTL 193 (274)
T ss_pred -----CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccH
Confidence 1112356999999999999999876 4899999999998764
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=115.76 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=114.1
Q ss_pred CCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCC-------Cchh---hhh-hcC-CCceEEEeccCCCccc-
Q 027129 31 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTG-------SKDN---LRK-WIG-HPRFELIRHDVTEPLL- 95 (228)
Q Consensus 31 ~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~-------~~~~---~~~-~~~-~~~~~~~~~d~~~~~~- 95 (228)
.+++++||||+| .||++++++|++.| .+|+++.|.... ..+. ... ... ...+..+++|+++...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G-~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAG-ADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 378999999995 89999999999999 899887542110 0111 111 111 2357788999988632
Q ss_pred -----------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCC
Q 027129 96 -----------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPL 155 (228)
Q Consensus 96 -----------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~ 155 (228)
..+|++||+||........ ++.+..+++|+.++..+.+++ ++.+. +||++||...+
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~---- 159 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ---- 159 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC----
Confidence 2589999999875432111 234566889999888875443 33333 89999997543
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 156 VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 156 ~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ ++++++.++||.+-.+
T Consensus 160 ------------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~ 204 (256)
T PRK12859 160 ------------GPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTG 204 (256)
T ss_pred ------------CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCC
Confidence 12233467999999999999998765 5899999999998765
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-15 Score=118.15 Aligned_cols=161 Identities=16% Similarity=0.051 Sum_probs=114.2
Q ss_pred CCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||++ .||+++++.|+++| ++|++..|+ .+..+...++.. ......+++|+++...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G-~~vil~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQN-DKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCC-CEEEEEecc-hhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 478999999985 99999999999999 999988874 222222332221 1345678899988632
Q ss_pred CCccEEEEccCCCCccc---------ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF---------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||...... ..++++..+++|+.++..+.+++... +.++|++||.....
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------- 151 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 151 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence 36899999998653211 11223456788999888887776432 23799999875321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+..+
T Consensus 152 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~ 195 (262)
T PRK07984 152 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTL 195 (262)
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccch
Confidence 1122356999999999999999876 4899999999998664
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-15 Score=119.06 Aligned_cols=162 Identities=14% Similarity=0.034 Sum_probs=116.4
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCC--CchhhhhhcCC-CceEEEeccCCCccc----------
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIGH-PRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~d~~~~~~---------- 95 (228)
++|+++||||+ +.||++++++|.+.| ++|++..|.... ..+...++... .....++.|+++...
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAG-AELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCC-CEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 47899999986 899999999999999 999887664332 12222222221 235678899988632
Q ss_pred --CCccEEEEccCCCCc-----cc---ccCCchhhHHhhHHHHHHHHHHHHH---cCCeEEEEccceeccCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~---~~~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||.... .. ..++++..+++|+.++..+.+++.. .+.+||++||.....
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~---------- 153 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR---------- 153 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc----------
Confidence 369999999996532 11 1133467789999999888887543 224899999974321
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |++++.+.||.+-.+
T Consensus 154 ------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~ 197 (258)
T PRK07370 154 ------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTL 197 (258)
T ss_pred ------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCc
Confidence 12223569999999999999998764 799999999998765
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=118.59 Aligned_cols=161 Identities=14% Similarity=0.023 Sum_probs=114.3
Q ss_pred CCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||++ .||++++++|.++| ++|++..|+ ....+...++... ....++++|+++...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G-~~v~~~~r~-~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG-AELWFTYQS-EVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC-CEEEEEeCc-hHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999999997 89999999999999 899888774 2212223333221 222356889988632
Q ss_pred CCccEEEEccCCCCcc-----c---ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-----F---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-----~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||++|..... . ..+++...+++|+.++..+++++... +.++|++||.....
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------ 152 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------ 152 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence 3699999999864321 1 11234567899999999888865321 23899999865321
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|+..+.+.+.++.+ +|++++.+.||.+-.+
T Consensus 153 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~ 196 (260)
T PRK06603 153 ----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTL 196 (260)
T ss_pred ----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcch
Confidence 1112356999999999999998875 4899999999998654
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=116.96 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=111.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEeccCCCccc------------CCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~------------~~~ 98 (228)
|+++||||++.||++++++|. +| ++|+++.|+..+..+...++... ..+.++++|+.|... .++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999998 58 99999998543332222222221 246788999988632 269
Q ss_pred cEEEEccCCCCcccc-c---CCchhhHHhhHHHHHHHHH----HHHHcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY-K---YNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~-~---~~~~~~~~~n~~~~~~l~~----~~~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||....... . ....+.+.+|+.+...+.. .+.+.+ .+||++||...+-
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---------------- 142 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR---------------- 142 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------
Confidence 999999987543211 1 1123445677777765544 344443 3899999975431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ .+++++.+.||.+..+
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 143 ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 1122357999999999999998876 4799999999999775
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=115.66 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=107.7
Q ss_pred chhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCc
Q 027129 24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEV 98 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 98 (228)
++..+..++++++||||+|+||++++++|+++| ++|++++|+.....+ .... .....+..|+++.. ..++
T Consensus 6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G-~~Vi~~~r~~~~~~~---~~~~-~~~~~~~~D~~~~~~~~~~~~~i 80 (245)
T PRK12367 6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKG-AKVIGLTHSKINNSE---SNDE-SPNEWIKWECGKEESLDKQLASL 80 (245)
T ss_pred hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEECCchhhhh---hhcc-CCCeEEEeeCCCHHHHHHhcCCC
Confidence 345555568999999999999999999999999 999999885421111 1111 11245677877653 3479
Q ss_pred cEEEEccCCCCcc-cccCCchhhHHhhHHHHHHHHHHHHHc--------CCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++|||||..... ...++.+..+++|+.++..+++++... +..++..||...+. +
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~ 144 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------P 144 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------C
Confidence 9999999864322 122455778899999999999876431 22344444432221 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHH-------HhCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHR-------QHGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~-------~~~i~~~ilRp~~i~G~ 209 (228)
. ..+.|+.||...+.+. .++. ..++.+..+.|+.+..+
T Consensus 145 ~-~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~ 189 (245)
T PRK12367 145 A-LSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSE 189 (245)
T ss_pred C-CCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccc
Confidence 1 2346999999986543 3332 35888888888887544
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=108.51 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=112.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh---hhhc-CCCceEEEeccCCCccc------------C
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---RKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++++|+||+|+||.+++++|.++|.+.|+++.|+........ ..+. ...++.++..|+++... .
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999998346888888544332211 1111 12357788899887521 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
.+|.+||++|........ ++.+..++.|+.++..+++++++.+. ++|++||....- +..
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------------~~~ 144 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------------GNP 144 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc----------------CCC
Confidence 479999999865432211 33466789999999999999977765 799998874421 111
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeecccc
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~ 207 (228)
....|+.+|...+.+++.+. ..+++++.+.|+.+-
T Consensus 145 ~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~ 179 (180)
T smart00822 145 GQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA 179 (180)
T ss_pred CchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence 23569999999999986654 458999999887653
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=129.35 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=118.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+++||++++++|.+.| ++|+++.|+.....+...+. ...+..++.|+++... .++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAG-DQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999 99999988533222222222 1356678899988632 369
Q ss_pred cEEEEccCCCCc------ccccCCchhhHHhhHHHHHHHHHHHHHc----C--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 99 D~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
|++||+||...+ ....++.+..+++|+.++..+++++... + .++|++||.....
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~-------------- 146 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV-------------- 146 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------------
Confidence 999999986321 1112335678899999999888876532 2 3899999976432
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ ++++++.+.||.+..+.
T Consensus 147 --~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 147 --ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 1122357999999999999998776 48999999999886653
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=111.86 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=106.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi~~ 104 (228)
|+++||||+|+||++++++|.++ ++|+++.|+.. .++.|+++.. ..++|++||+
T Consensus 1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ 62 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSA 62 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence 58999999999999999999887 78999988421 2345555532 2379999999
Q ss_pred cCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHH
Q 027129 105 ACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 105 a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
||....... .++..+.+++|+.++.++.+++... +.+|+++||.... .+......|+
T Consensus 63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~----------------~~~~~~~~Y~ 126 (199)
T PRK07578 63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD----------------EPIPGGASAA 126 (199)
T ss_pred CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC----------------CCCCCchHHH
Confidence 997543222 1234566789999999999887542 2379999986532 1222346799
Q ss_pred HhHHHHHHHHHHHHHH--hCCcEEEeeeccccCC
Q 027129 178 EGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGP 209 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~--~~i~~~ilRp~~i~G~ 209 (228)
.+|...+.+.+.++.+ .+++++.+.||.+-.+
T Consensus 127 ~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~ 160 (199)
T PRK07578 127 TVNGALEGFVKAAALELPRGIRINVVSPTVLTES 160 (199)
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCc
Confidence 9999999999998875 4899999999987654
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-15 Score=117.70 Aligned_cols=161 Identities=14% Similarity=-0.013 Sum_probs=112.6
Q ss_pred CCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 95 (228)
++|+++|||| ++.||++++++|+++| .+|++..|. ....+..+++... .....+++|+++...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G-~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQG-AELAFTYVV-DKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCc-HHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence 3689999997 6799999999999999 999888763 2222333333221 234568899998632
Q ss_pred CCccEEEEccCCCCccc-----cc----CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF-----YK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~-----~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++|||||...... .. +.....+++|+.++..+.+.+. +.+.+||++||...+.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---------- 152 (261)
T PRK08690 83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---------- 152 (261)
T ss_pred CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc----------
Confidence 36999999999764311 11 1234456788888877766543 2223799999875431
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+-.+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~ 196 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTL 196 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccch
Confidence 1122356999999999999888754 5899999999998665
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=111.49 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=109.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC--CCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~--~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
|+++||||++.||++++++|+++|.+.|+++.|+ .....+....+. ...++.+++.|+++... ..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999964788888885 111111112221 23678999999998632 37
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
+|++||++|........ ++.++.++.|+.++..+.+++...+. +||++||.... .+...
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~~~~~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV----------------RGSPG 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT----------------SSSTT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc----------------cCCCC
Confidence 99999999987643332 23457889999999999998887444 89999998654 23334
Q ss_pred CChHHHhHHHHHHHHHHHHHH
Q 027129 173 RSCYDEGKRVAETLMFDYHRQ 193 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~ 193 (228)
...|+.+|...+.+.+.++++
T Consensus 145 ~~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999876
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=116.35 Aligned_cols=161 Identities=14% Similarity=-0.019 Sum_probs=114.0
Q ss_pred CCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~------------ 95 (228)
++|+++|||| ++.||++++++|+++| ++|++..|.. ...+....+... .....++.|+++...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G-~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREG-AELAFTYVGD-RFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCC-CeEEEEccch-HHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 3689999996 6899999999999999 9998886531 122333222211 223457889988632
Q ss_pred CCccEEEEccCCCCcc---------cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||..... ...++.+..+++|+.++..+.+++... +.++|++||....
T Consensus 83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~------------ 150 (260)
T PRK06997 83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE------------ 150 (260)
T ss_pred CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc------------
Confidence 3699999999975321 011234567899999998888876542 2389999987532
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ +|++++.+.||.+-.+
T Consensus 151 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~ 195 (260)
T PRK06997 151 ----RVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTL 195 (260)
T ss_pred ----cCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccc
Confidence 11122356999999999999999876 4899999999988654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=115.21 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=114.0
Q ss_pred CCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCC-CCchhhhhhcCCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~------------ 95 (228)
.+|+++|||| ++.||.+++++|++.| ++|++++|... ...+....... ..+.+++.|+++...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG-AEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC-CEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999 8999999999999999 99999987431 11122222111 246788899988632
Q ss_pred CCccEEEEccCCCCcc-----ccc---CCchhhHHhhHHHHHHHHHHHHH---cCCeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-----FYK---YNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-----~~~---~~~~~~~~~n~~~~~~l~~~~~~---~~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||..... ... ++..+.+++|+.++..+.+.+.. .+.++|++|+....
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------------- 150 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------------- 150 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc-------------
Confidence 3699999999975321 111 23345689999999888776543 12378888754211
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|+..+.+.+.++.+ +|++++.+.||.+-.+.
T Consensus 151 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~ 195 (256)
T PRK07889 151 ----AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLA 195 (256)
T ss_pred ----cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChh
Confidence 1112356899999999999998876 48999999999997753
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=104.64 Aligned_cols=158 Identities=14% Similarity=0.141 Sum_probs=115.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~a~~ 107 (228)
|||.|+||||.+|+.+++..+.+| |+|++++|+..+..+. ..+...+.|+.+... .+.|+||...+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 789999999999999999999999 9999999965554432 367788888887654 489999998764
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcccee-ccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
..+ .+. +........+++.++..++ |++.++.++- |-+.. ..+.+ .|..|...|...+..+|.
T Consensus 73 ~~~----~~~----~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~rLvD------~p~fP~ey~~~A~~~ae~ 137 (211)
T COG2910 73 GAS----DND----ELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TRLVD------TPDFPAEYKPEALAQAEF 137 (211)
T ss_pred CCC----Chh----HHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-ceeec------CCCCchhHHHHHHHHHHH
Confidence 321 111 2334456778888888888 9888887753 43333 22222 355665667888887776
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
+ ..+..+.+++|+.+.|+..+-|++...
T Consensus 138 L-~~Lr~~~~l~WTfvSPaa~f~PGerTg 165 (211)
T COG2910 138 L-DSLRAEKSLDWTFVSPAAFFEPGERTG 165 (211)
T ss_pred H-HHHhhccCcceEEeCcHHhcCCccccC
Confidence 4 556555579999999999999976653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=124.30 Aligned_cols=159 Identities=18% Similarity=0.108 Sum_probs=116.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+++++||||+|+||.+++++|.+.| ++|+++++.. ..+.............+..|+++... .++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~G-a~vi~~~~~~--~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 285 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDG-AHVVCLDVPA--AGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGL 285 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCc--cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999 9999998732 22222222222234567788887532 268
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHcC-----CeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~-----~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||+||....... .+..+..++.|+.++.++.+++.... .+||++||...+..
T Consensus 286 d~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g---------------- 349 (450)
T PRK08261 286 DIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAG---------------- 349 (450)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC----------------
Confidence 999999997643221 23345678999999999999886532 37999999754321
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
......|+.+|...+.+++.++.+ ++++++.+.||.+-.
T Consensus 350 ~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t 391 (450)
T PRK08261 350 NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIET 391 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcc
Confidence 112356999999988888887654 489999999998754
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-14 Score=109.94 Aligned_cols=160 Identities=7% Similarity=0.028 Sum_probs=111.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------cC-
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI- 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~- 96 (228)
.+++++||||++.||++++++|.+.| ++|+++.|+.....+....... ...+..++.|+.+.. +.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 9999999854332222222211 234566777887752 23
Q ss_pred CccEEEEccCCCCcc-ccc----CCchhhHHhhHHHHHHHHHH----HHHcC--CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGL----AKRVG--ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~-~~~----~~~~~~~~~n~~~~~~l~~~----~~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||++|..... ... ++..+.++.|..++..+++. +++.+ .++|++||...+
T Consensus 83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------- 148 (227)
T PRK08862 83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------- 148 (227)
T ss_pred CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC--------------
Confidence 699999999753322 111 12234556677776665443 44443 389999985321
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.++.+ ++++++.+.||.+-.+.
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence 12356999999999999998875 48999999999987763
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=115.40 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=113.1
Q ss_pred EEEEecCcchhHHHHHHHHHh----cCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCcccC----------
Q 027129 34 RILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLI---------- 96 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---------- 96 (228)
.++||||+++||.+++++|.+ .| ++|+++.|+.....+....+.. ...+.++.+|+++....
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 68 8999999954332222222221 23578889999886311
Q ss_pred ------CccEEEEccCCCCcc--cc-----cCCchhhHHhhHHHHHHHHHHHH----Hc-C--CeEEEEccceeccCCCC
Q 027129 97 ------EVDQIYHLACPASPI--FY-----KYNPVKTIKTNVIGTLNMLGLAK----RV-G--ARILLTSTSEVYGDPLV 156 (228)
Q Consensus 97 ------~~D~vi~~a~~~~~~--~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~-~--~r~i~~Ss~~~y~~~~~ 156 (228)
+.|++||+||..... .. .++.+..+++|+.++..+.+.+. +. + .+||++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 136999999864321 11 12345788999999887776553 22 2 3799999985431
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 157 ~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ ++++++.+.||.+-.+
T Consensus 157 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 157 ------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 2223457999999999999998776 4799999999998654
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-14 Score=115.89 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=112.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC------chh---hhhhc-C-CCceEEEeccCCCccc----
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------KDN---LRKWI-G-HPRFELIRHDVTEPLL---- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------~~~---~~~~~-~-~~~~~~~~~d~~~~~~---- 95 (228)
++|+++||||+++||++++++|++.| ++|++++|+..+. .+. ..+.. . ...+..+++|+++...
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 47999999999999999999999999 9999999864211 111 11111 1 1246778899998632
Q ss_pred --------CCccEEEEcc-CCCC-----ccccc---CCchhhHHhhHHHHHHHHHHHH----HcC-CeEEEEcccee-cc
Q 027129 96 --------IEVDQIYHLA-CPAS-----PIFYK---YNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEV-YG 152 (228)
Q Consensus 96 --------~~~D~vi~~a-~~~~-----~~~~~---~~~~~~~~~n~~~~~~l~~~~~----~~~-~r~i~~Ss~~~-y~ 152 (228)
.++|++||+| |... ..... ++....+++|+.++..+.+++. +.+ .+||++||... +.
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~ 165 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN 165 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence 3699999999 6421 11111 2234567888888877766553 333 38999998542 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 153 ~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
. .+......|+.+|.....+.+.++.++ |++++.+.||.|-.+
T Consensus 166 ~--------------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 166 A--------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred C--------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 1 011123469999999999999888764 799999999988554
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-14 Score=109.87 Aligned_cols=161 Identities=14% Similarity=0.066 Sum_probs=122.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
-+++.||||||+++||+.++.++++.| ..+.+.+.+.....+.........++....+|+++... .+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999 78889999777766666555443468889999998632 26
Q ss_pred ccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||+.......+ .-++.+++|+.+.....++ +.+.+. ++|.++|...+-
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~---------------- 178 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF---------------- 178 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc----------------
Confidence 999999999987655442 2356778898888776664 444443 999999985431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH------hCCcEEEeeecccc
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ------HGIEIRIARIFNTY 207 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~------~~i~~~ilRp~~i~ 207 (228)
.......|+.||.++.-+.+.+..+ .|++++.+-|..+-
T Consensus 179 g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~ 223 (300)
T KOG1201|consen 179 GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN 223 (300)
T ss_pred CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc
Confidence 2223356999999999888887754 37999999988765
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=113.83 Aligned_cols=178 Identities=19% Similarity=0.134 Sum_probs=131.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~---------- 95 (228)
...+++++|||||++||.+++++|...| .+|+...|+.....+....+. ....+.+.+.|+.+...
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG-AHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3446899999999999999999999999 999999996544333333333 23567889999998632
Q ss_pred --CCccEEEEccCCCCcccc--cCCchhhHHhhHHHHHHHHHHH----HHcC-CeEEEEccceeccC--CCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFY--KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGD--PLVHPQDESYW 164 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~----~~~~-~r~i~~Ss~~~y~~--~~~~~~~e~~~ 164 (228)
.+.|++|++||+..+... .+..|..+.+|..+...+.+.+ ++.. .|||++||..- +. +......|.
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~-- 187 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEK-- 187 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchh--
Confidence 379999999999876542 3557889999999998887764 4444 49999999864 11 111111111
Q ss_pred CCCCC-CCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCCCCC
Q 027129 165 GNVNP-IGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 165 ~~~~~-~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~~~~ 213 (228)
.. ......|+.||.....+..+++++. |+.+..+.||.+..++...
T Consensus 188 ---~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r 236 (314)
T KOG1208|consen 188 ---AKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR 236 (314)
T ss_pred ---ccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec
Confidence 11 2232359999999999999998775 6999999999998875443
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-14 Score=109.31 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi~ 103 (228)
|+++||||+|+||++++++|++++ ...|.+..|..... .....+.++++|+++.. ..++|++||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 689999999999999999999985 15666655532211 11246788899998763 237999999
Q ss_pred ccCCCCccc------cc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 104 LACPASPIF------YK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 104 ~a~~~~~~~------~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+||...... .. +.....+.+|+.+...+.+.+.. .+. +++++||.. +.. .+ .
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~-----~~------~ 140 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSI-----SD------N 140 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccc-----cc------C
Confidence 999764211 01 12345678888888888776643 233 788888742 111 00 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~~ 210 (228)
+..+...|+.+|...+.+.+.++.+ .++++..+.||.+..+.
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~ 187 (235)
T PRK09009 141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTAL 187 (235)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCC
Confidence 1223357999999999999998865 37889999999987764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=114.88 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=112.7
Q ss_pred EEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCccEEE
Q 027129 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEVDQIY 102 (228)
Q Consensus 36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~D~vi 102 (228)
+||||+++||.+++++|++.|.++|++..|+.....+....+. ....+.++..|+.+... .++|++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 5999999999999999999986688888884322221222221 12357778889988632 2689999
Q ss_pred EccCCCCccc-----ccCCchhhHHhhHHHHHHHHHH----HHHcC---CeEEEEccceeccCCCC---CC---CC----
Q 027129 103 HLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGL----AKRVG---ARILLTSTSEVYGDPLV---HP---QD---- 160 (228)
Q Consensus 103 ~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~---~r~i~~Ss~~~y~~~~~---~~---~~---- 160 (228)
|+||...+.. ..++.+..+++|+.++..+.+. +++.+ .+||++||...+..... .+ +.
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 9999753211 1234567889999998777665 44443 48999999865321000 00 00
Q ss_pred -------CCC--CCCCCCCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 161 -------ESY--WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 161 -------e~~--~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
+.. +.......+...|+.||++.+.+.+.++.+ .|+.++.+.||.|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 222 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATT 222 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCc
Confidence 000 000012234467999999977777777665 3799999999999644
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-14 Score=114.35 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=89.6
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----c------CC-ccEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L------IE-VDQI 101 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~------~~-~D~v 101 (228)
+|+||||||++|++++++|++.| ++|.+++|+..+.. ...++.+.+|++|.. + .+ +|.|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v 71 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV 71 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence 48999999999999999999999 99999999654321 124556667777653 2 35 8999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
+|+++... + ......++++++++.|+ |||++||..++... ..+
T Consensus 72 ~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~-----------------------~~~ 115 (285)
T TIGR03649 72 YLVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKGG-----------------------PAM 115 (285)
T ss_pred EEeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCCC-----------------------chH
Confidence 99875321 0 12345688999999998 89999987543110 012
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
...|.++++ ..+++++++||+.+|+.
T Consensus 116 ~~~~~~l~~---~~gi~~tilRp~~f~~~ 141 (285)
T TIGR03649 116 GQVHAHLDS---LGGVEYTVLRPTWFMEN 141 (285)
T ss_pred HHHHHHHHh---ccCCCEEEEeccHHhhh
Confidence 223443322 13899999999988864
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=108.33 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=121.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC----CCceEEEeccCCCcc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL------------ 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~------------ 94 (228)
.+|+++||||+..||++++++|.+.| .+|++..|..+...+....+.. ...+....+|+.+..
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999999965543333333221 235778889998652
Q ss_pred -cCCccEEEEccCCCCccc-----ccCCchhhHHhhHHH-HHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCC
Q 027129 95 -LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIG-TLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 95 -~~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~-~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
+.++|++|++||...... ..+.++..+++|+.+ ...+...+.. .+. .++++||...+...
T Consensus 86 ~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~-------- 157 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG-------- 157 (270)
T ss_pred hCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC--------
Confidence 347999999999876442 224456778999994 5565555432 233 78888887544211
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+..+ ..|+.+|...+++.+.++.+ +|++++.+-||.|..+.
T Consensus 158 ------~~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 158 ------PGSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL 201 (270)
T ss_pred ------CCCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence 1111 57999999999999999876 59999999999988875
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-14 Score=103.68 Aligned_cols=163 Identities=18% Similarity=0.131 Sum_probs=117.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-----CcccCCccEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-----EPLLIEVDQIY 102 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~D~vi 102 (228)
-++||+.+|.||||-.|+.+++++++.+. ..|+++.|+.....+. ...+.....|+. ....+++|+.+
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at------~k~v~q~~vDf~Kl~~~a~~~qg~dV~F 88 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT------DKVVAQVEVDFSKLSQLATNEQGPDVLF 88 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc------cceeeeEEechHHHHHHHhhhcCCceEE
Confidence 34589999999999999999999999874 6899998853322221 122333333333 23456899999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
++-|-+... ...+.++++.......+++++++.|+ +|+.+||.+.-. ...-.|-.+|.
T Consensus 89 caLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~------------------sSrFlY~k~KG 147 (238)
T KOG4039|consen 89 CALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADP------------------SSRFLYMKMKG 147 (238)
T ss_pred Eeecccccc---cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCc------------------ccceeeeeccc
Confidence 988754332 22456678888888899999999999 799999986421 11235889999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHH
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSN 221 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~ 221 (228)
+.|.-+.++.-+ .++|+|||.+-|...+...+.|+-+
T Consensus 148 EvE~~v~eL~F~---~~~i~RPG~ll~~R~esr~geflg~ 184 (238)
T KOG4039|consen 148 EVERDVIELDFK---HIIILRPGPLLGERTESRQGEFLGN 184 (238)
T ss_pred hhhhhhhhcccc---EEEEecCcceecccccccccchhhh
Confidence 999988776433 5899999999998877654444433
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=112.84 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=103.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
.+|+++||||+|+||++++++|.++| ++|++++|+..+..+.... ....+..+..|+++.. +.++|++||+|
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G-~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQG-AKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 47899999999999999999999999 9999998853322111111 1123567778888754 34799999999
Q ss_pred CCCCcc-cccCCchhhHHhhHHHHHHHHHHHHH----cC----C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 106 CPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKR----VG----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~----~~----~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
|..... ...++.++.+++|+.++.++++++.. .+ . .+|++|+... .+ ...+.
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-----------------~~-~~~~~ 315 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-----------------NP-AFSPL 315 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-----------------cC-CCchH
Confidence 864321 12234467889999999999998643 22 1 2455554321 11 11246
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeecccc
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~ 207 (228)
|+.||...+.+......+.++.+..+.|+-+.
T Consensus 316 Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~ 347 (406)
T PRK07424 316 YELSKRALGDLVTLRRLDAPCVVRKLILGPFK 347 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEeCCCc
Confidence 99999999887543333346666666666554
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=99.86 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=120.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+-+||||||+.+||.++++++.+.| .+|++..| +.+.+.+.. ..+.+.-..+|+.|... ..
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR----~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~ 78 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELG-NTVIICGR----NEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPN 78 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecC----cHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence 36799999999999999999999999 89999999 444444332 23566677778777642 26
Q ss_pred ccEEEEccCCCCccccc------CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.+++|+|||+....... ++.++-+++|+.++..+..+.-. ... -+|.+||.-.|
T Consensus 79 lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf--------------- 143 (245)
T COG3967 79 LNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF--------------- 143 (245)
T ss_pred hheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc---------------
Confidence 99999999986543221 23456678999999988876543 333 79999998665
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.|....+.|+.+|+.+.-+-..++++ .++++.-+-|+.|-.+
T Consensus 144 -vPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 144 -VPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred -CcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 35555678999999999988888765 3789999999998875
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=103.80 Aligned_cols=158 Identities=17% Similarity=0.170 Sum_probs=118.7
Q ss_pred cCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------------
Q 027129 30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------- 95 (228)
.+.++|+||| +.|+||.++++.+.++| +.|++..|..+... ++..+.++.....|+++++.
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~M~----~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~ 79 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEPMA----QLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPD 79 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccchHh----hHHHhhCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence 3468899998 67999999999999999 99999999544433 33333467778888887642
Q ss_pred CCccEEEEccCCCCcc-ccc---CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-FYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.+.|+++|+||..-.. ..+ ...++.+++|+.+..++.++... .+.+||+++|...|
T Consensus 80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~---------------- 143 (289)
T KOG1209|consen 80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV---------------- 143 (289)
T ss_pred CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE----------------
Confidence 3699999999864221 111 23467889999999888887653 33389999999877
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
-|....+.|..||++...+.+.++-+ +|++++-+-+|+|--
T Consensus 144 vpfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 144 VPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred eccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 35555578999999999988877543 588898888887754
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=105.59 Aligned_cols=159 Identities=25% Similarity=0.298 Sum_probs=128.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-CchhhhhhcC------CCceEEEeccCCCcc-------cCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG------HPRFELIRHDVTEPL-------LIE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~------~~~~~~~~~d~~~~~-------~~~ 97 (228)
.|..||||-||+=|++|++.|+..| ++|.++.|+.+. +.....-+.. .....+..+|++|.. ..+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 5789999999999999999999999 999999985443 1222222221 245788889999863 348
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
++-|+|+|+..+...+.+-++-.-++...++.+++++.+.++. ||-..||...||.....|..|. .|+-|.
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyPR 181 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYPR 181 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCCC
Confidence 9999999998877666655555567888999999999988763 8999999999999989999998 899999
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGI 196 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i 196 (228)
++|+.+|..+-..+-.|++.+++
T Consensus 182 SPYa~aKmy~~WivvNyREAYnm 204 (376)
T KOG1372|consen 182 SPYAAAKMYGYWIVVNYREAYNM 204 (376)
T ss_pred ChhHHhhhhheEEEEEhHHhhcc
Confidence 99999999988888788777765
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=106.63 Aligned_cols=163 Identities=10% Similarity=0.004 Sum_probs=109.5
Q ss_pred cCCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----------CCC----ceEEEeccC--C
Q 027129 30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GHP----RFELIRHDV--T 91 (228)
Q Consensus 30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----------~~~----~~~~~~~d~--~ 91 (228)
..+|+++|||| +..||+++++.|.+.| .+|++ .|......+...... ... ....+..|+ .
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~G-a~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAG-AEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 34899999999 7999999999999999 89887 553222111110010 000 123455565 2
Q ss_pred Ccc------------------------------cCCccEEEEccCCCCc---c---cccCCchhhHHhhHHHHHHHHHHH
Q 027129 92 EPL------------------------------LIEVDQIYHLACPASP---I---FYKYNPVKTIKTNVIGTLNMLGLA 135 (228)
Q Consensus 92 ~~~------------------------------~~~~D~vi~~a~~~~~---~---~~~~~~~~~~~~n~~~~~~l~~~~ 135 (228)
+.. +.++|++|||||.... . ...+++...+++|+.++..+.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 1269999999975321 1 112445678899999999998876
Q ss_pred HHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC-ChHHHhHHHHHHHHHHHHHH----hCCcEEEeeecccc
Q 027129 136 KRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTY 207 (228)
Q Consensus 136 ~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~-~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~ 207 (228)
... +.++|++||..... +.... ..|+.+|...+.+.+.++.+ +|++++.|-||.+-
T Consensus 165 ~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~ 228 (303)
T PLN02730 165 GPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLG 228 (303)
T ss_pred HHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCcc
Confidence 442 24899999975421 11112 36999999999999999875 36999999999887
Q ss_pred CCC
Q 027129 208 GPR 210 (228)
Q Consensus 208 G~~ 210 (228)
.+.
T Consensus 229 T~~ 231 (303)
T PLN02730 229 SRA 231 (303)
T ss_pred Cch
Confidence 653
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=103.98 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=115.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhc-CC--CceEEEeccCCC-cc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-GH--PRFELIRHDVTE-PL---------- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-~~--~~~~~~~~d~~~-~~---------- 94 (228)
..+|+++||||++.||+++++.|.+.| +.|+++.|..... .+...... .. ..+.....|+++ ..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~ 81 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREG-ARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE 81 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 347999999999999999999999999 9988888754431 11121111 11 246677789887 42
Q ss_pred --cCCccEEEEccCCCCc--ccc---cCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCC
Q 027129 95 --LIEVDQIYHLACPASP--IFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 95 --~~~~D~vi~~a~~~~~--~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
..++|++||+||.... ... .+..+..+++|+.+...+.+.+...-. +||++||.... ..
T Consensus 82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~----------- 149 (251)
T COG1028 82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG----------- 149 (251)
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC-----------
Confidence 1259999999997642 111 234567889999998888875544333 89999998643 21
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeecccc
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY 207 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~ 207 (228)
+.. ...|+.||...+.+.+.++.+ +|++++.+-||.+-
T Consensus 150 ---~~~-~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 150 ---PPG-QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred ---CCC-cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 110 367999999999999998855 58999999999554
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=104.39 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=119.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC--------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------------- 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------------- 96 (228)
+.|-|+|||.-..+|+.++++|.+.| +.|.+-.-... ..+.++.....++...++.|+++++..
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~-gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~ 105 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEE-GAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED 105 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCc-hHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence 36889999999999999999999999 99999885333 333444433357788889999987432
Q ss_pred CccEEEEccCCCCccccc-----CCchhhHHhhHHHHHHHHHHH----HHcCCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK-----YNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~----~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+.-.+|||||+....... +++...+++|+.|+..+..+. +++..|+|++||... .
T Consensus 106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G---R------------- 169 (322)
T KOG1610|consen 106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG---R------------- 169 (322)
T ss_pred cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc---C-------------
Confidence 588999999965432211 456788999999998887754 455559999999853 1
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeec
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF 204 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~ 204 (228)
.+.....+|+.||.+.|.+...++.+ +|+.+.++-||
T Consensus 170 ~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG 209 (322)
T KOG1610|consen 170 VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG 209 (322)
T ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC
Confidence 12223367999999999999998866 59999999999
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=106.21 Aligned_cols=140 Identities=23% Similarity=0.242 Sum_probs=93.5
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCCCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS 109 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~~~ 109 (228)
|+|+||||.+|+.+++.|++.+ ++|.++.|+.. ......+ ....++++.+|..+.. +.++|.||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~--~~~~~~l-~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPS--SDRAQQL-QALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSH--HHHHHHH-HHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccc--hhhhhhh-hcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 7999999999999999999988 99999999542 1122222 2246788899998763 458999998876332
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccce-eccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM 187 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~-~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~ 187 (228)
........++++++++.|+ +|| .||.. .+. +. ....|.......|...|+.+
T Consensus 77 ------------~~~~~~~~~li~Aa~~agVk~~v-~ss~~~~~~--------~~-----~~~~p~~~~~~~k~~ie~~l 130 (233)
T PF05368_consen 77 ------------PSELEQQKNLIDAAKAAGVKHFV-PSSFGADYD--------ES-----SGSEPEIPHFDQKAEIEEYL 130 (233)
T ss_dssp ------------CCHHHHHHHHHHHHHHHT-SEEE-ESEESSGTT--------TT-----TTSTTHHHHHHHHHHHHHHH
T ss_pred ------------hhhhhhhhhHHHhhhccccceEE-EEEeccccc--------cc-----ccccccchhhhhhhhhhhhh
Confidence 1234455799999999999 566 55542 221 00 11222233456777777776
Q ss_pred HHHHHHhCCcEEEeeeccccC
Q 027129 188 FDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 188 ~~~~~~~~i~~~ilRp~~i~G 208 (228)
++ .+++++++||+..+.
T Consensus 131 ~~----~~i~~t~i~~g~f~e 147 (233)
T PF05368_consen 131 RE----SGIPYTIIRPGFFME 147 (233)
T ss_dssp HH----CTSEBEEEEE-EEHH
T ss_pred hh----ccccceeccccchhh
Confidence 54 489999999997654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=99.66 Aligned_cols=165 Identities=16% Similarity=0.071 Sum_probs=116.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
.+..+||||+..||+++++.|.+.| .+|.+.+++.....+....+.....-..+.+|+.+... ..++
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~G-arv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ps 92 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKG-ARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPS 92 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcC-cEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCc
Confidence 5789999999999999999999999 99999988655444444444333445567788877532 2699
Q ss_pred EEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc-------CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV-------GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 100 ~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~-------~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++++|||++..... .+++...+.+|+.++..+.+++.+. +.+||.+||+----.+.
T Consensus 93 vlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~------------- 159 (256)
T KOG1200|consen 93 VLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNF------------- 159 (256)
T ss_pred EEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccc-------------
Confidence 99999999765432 2456788899999998888876543 23899999984321111
Q ss_pred CCCCCChHHHhHHHHHHHH----HHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLM----FDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~----~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
..+.|+.+|.-.--+- ++.++ .+|+++.+-||+|-.|.....
T Consensus 160 ---GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~m 205 (256)
T KOG1200|consen 160 ---GQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEAM 205 (256)
T ss_pred ---cchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhhc
Confidence 1244666665433222 33333 389999999999998876653
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=105.00 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=100.5
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-C---------C
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-I---------E 97 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~---------~ 97 (228)
.+.++++|+|+||||.+|+-+++.|+++| +.|.++.|...+................+..+...... . .
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~ 153 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKG 153 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhcccc
Confidence 34557899999999999999999999999 99999999544433332211112333333333332211 1 2
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
..+++-+++-. ... .+..--+++...++++++++|+..|+ |++++|+++.-.-. ... ........+
T Consensus 154 ~~~v~~~~ggr--p~~-ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~------~~~----~~~~~~~~~ 220 (411)
T KOG1203|consen 154 VVIVIKGAGGR--PEE-EDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFN------QPP----NILLLNGLV 220 (411)
T ss_pred ceeEEecccCC--CCc-ccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccC------CCc----hhhhhhhhh
Confidence 33555555421 111 11122336789999999999999999 89999987542111 000 000002234
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccC
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
..+|..+|+++ ++.|++.+||||+...-
T Consensus 221 ~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~ 248 (411)
T KOG1203|consen 221 LKAKLKAEKFL----QDSGLPYTIIRPGGLEQ 248 (411)
T ss_pred hHHHHhHHHHH----HhcCCCcEEEecccccc
Confidence 46666666665 45699999999987543
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-12 Score=95.11 Aligned_cols=165 Identities=19% Similarity=0.109 Sum_probs=113.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEE-EEcCCCCCCchhhh-hhcCCCceEEEeccCCCccc-------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLR-KWIGHPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~-~~~r~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~------------- 95 (228)
++++|+||||+.+||.-|+++|++...-+++ +..|++++..+.+. ....+.+++.++.|++....
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999986424444 44443443222222 22346799999999986532
Q ss_pred -CCccEEEEccCCCCcccccCC-----chhhHHhhHHHHHHHHHHH----HHc---------CC---eEEEEccceeccC
Q 027129 96 -IEVDQIYHLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLA----KRV---------GA---RILLTSTSEVYGD 153 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~----~~~---------~~---r~i~~Ss~~~y~~ 153 (228)
.+.|++|++||+..+-..... .-..+++|..++..+.+.+ ++. .+ .+|++||.+.--+
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~ 161 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIG 161 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccC
Confidence 379999999998654322211 3467799999998887753 111 12 4888998754211
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
. ....+...|..||.+...+.+.++-+ .++-++.+-||+|--
T Consensus 162 --------~-----~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~T 206 (249)
T KOG1611|consen 162 --------G-----FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQT 206 (249)
T ss_pred --------C-----CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEc
Confidence 0 34555678999999999999998755 367788889998753
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-13 Score=104.13 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=113.3
Q ss_pred cCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------c-CCccEEEE
Q 027129 39 GGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L-IEVDQIYH 103 (228)
Q Consensus 39 Gat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~-~~~D~vi~ 103 (228)
|++ +.||++++++|+++| ++|++++|+..+..+.+.++......++++.|++++. + .++|++||
T Consensus 1 g~~~s~GiG~aia~~l~~~G-a~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~ 79 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEG-ANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN 79 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTT-EEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred CCCCCCChHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 566 999999999999999 9999999954432223333333233457999998863 3 57999999
Q ss_pred ccCCCCc----cccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASP----IFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 104 ~a~~~~~----~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
+++.... .... ++....++.|+.++..+++++.+. +.++|++||..... +...
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~----------------~~~~ 143 (241)
T PF13561_consen 80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR----------------PMPG 143 (241)
T ss_dssp EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS----------------BSTT
T ss_pred cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc----------------cCcc
Confidence 9987654 1111 234567899999999998887542 23799999885431 2233
Q ss_pred CChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
...|+.+|...+.+.+.++.+ +||++++|.||.+..+
T Consensus 144 ~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~ 184 (241)
T PF13561_consen 144 YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETP 184 (241)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSH
T ss_pred chhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceecc
Confidence 357999999999999998754 5899999999999765
|
... |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-12 Score=100.44 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc---------CCccEEEEccCCCCcccccCCch
Q 027129 48 LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHLACPASPIFYKYNPV 118 (228)
Q Consensus 48 l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~D~vi~~a~~~~~~~~~~~~~ 118 (228)
++++|+++| ++|++++|+..+.. ...++++|+++... .++|++||+||... ..+.+
T Consensus 1 ~a~~l~~~G-~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~ 65 (241)
T PRK12428 1 TARLLRFLG-ARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVE 65 (241)
T ss_pred ChHHHHhCC-CEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHH
Confidence 468899999 99999999543211 12456778876532 25899999998642 24567
Q ss_pred hhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC-----------CCCCCCCCCCChHHHhHHHHH
Q 027129 119 KTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY-----------WGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 119 ~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~-----------~~~~~~~~~~~~y~~sK~~~e 184 (228)
..+++|+.++..+++++... +.+||++||...|+.....+..+.. +....+....+.|+.+|...+
T Consensus 66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~ 145 (241)
T PRK12428 66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALI 145 (241)
T ss_pred HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHH
Confidence 88999999999999988653 2389999999887532211111110 000023344578999999999
Q ss_pred HHHHHHH-H---HhCCcEEEeeeccccCCC
Q 027129 185 TLMFDYH-R---QHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 185 ~~~~~~~-~---~~~i~~~ilRp~~i~G~~ 210 (228)
.+.+.++ . .+|+++++++||.+.++.
T Consensus 146 ~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 146 LWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred HHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 9998888 4 358999999999998874
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=96.52 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=100.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~a~~ 107 (228)
|+|+||||||++|++++++|++.| ++|.++.|+... ...+. ..+++...|+.+... .+.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~----~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEA----AAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHH----HHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 689999999999999999999999 999999994333 22222 578999999998754 478988888754
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
.. . . . ...........+..+.+. .+. +++++|..... ....+.|..+|..+|..
T Consensus 74 ~~-~---~-~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~------------------~~~~~~~~~~~~~~e~~ 128 (275)
T COG0702 74 LD-G---S-D-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGAD------------------AASPSALARAKAAVEAA 128 (275)
T ss_pred cc-c---c-c-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCC------------------CCCccHHHHHHHHHHHH
Confidence 32 1 1 1 222333444455555544 334 68888887532 12236699999999999
Q ss_pred HHHHHHHhCCcEEEeeeccccCCC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+.. .+++++++|+..+|...
T Consensus 129 l~~----sg~~~t~lr~~~~~~~~ 148 (275)
T COG0702 129 LRS----SGIPYTTLRRAAFYLGA 148 (275)
T ss_pred HHh----cCCCeEEEecCeeeecc
Confidence 865 48999999977766643
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7e-12 Score=95.27 Aligned_cols=155 Identities=22% Similarity=0.200 Sum_probs=112.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC--chhhhhhcCCCceEEEeccCCCcc------------cC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWIGHPRFELIRHDVTEPL------------LI 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~------------~~ 96 (228)
.+|++++||+.|.||+++.++|+..| -.+.+++.+.+.. ..++++..+...+-+++.|+++.. +.
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kg-ik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg 82 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKG-IKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG 82 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcC-chheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999 5554544433322 123455556678899999999853 23
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHH----HHHHcC--C--eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLG----LAKRVG--A--RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~----~~~~~~--~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.+|++||.||+.. +.+.+..+.+|+.+..+-.. ++.+.. . -+|.+||..-+ +
T Consensus 83 ~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL----------------~ 142 (261)
T KOG4169|consen 83 TIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL----------------D 142 (261)
T ss_pred ceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc----------------C
Confidence 6999999998654 56678888999888766544 444432 2 58999998543 3
Q ss_pred CCCCCChHHHhHHHHHHHHHHHH-----HHhCCcEEEeeeccc
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYH-----RQHGIEIRIARIFNT 206 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~-----~~~~i~~~ilRp~~i 206 (228)
|-...+.|+.||...=.+-++++ ++.|+++..+.||.+
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t 185 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFT 185 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcc
Confidence 55555779999988766666633 445999999999865
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-11 Score=90.47 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=103.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---hhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
+++||||+|.||..+++.|.+++..+|+++.|+..... .....+.. ...+.+.++|+++... .+
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 68999999999999999999998679999999622221 12222222 3578999999998632 36
Q ss_pred ccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcccee-ccCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++.|||+||........+ .....+..-+.+..++.++...... .||++||... +|..
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~----------------- 144 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP----------------- 144 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T-----------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc-----------------
Confidence 899999999765432222 2345567788889999999988777 6888899854 4432
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeecc
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~ 205 (228)
..+.|+......+.+.+.... .+.++..|..+.
T Consensus 145 gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 145 GQSAYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp TBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred chHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 236799999999998887655 488988887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=97.38 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=104.3
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCC-------CCCchhhhhh---cC---------------CCce
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRKW---IG---------------HPRF 83 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~-------~~~~~~~~~~---~~---------------~~~~ 83 (228)
.+|+++||||+ ..||+++++.|.++| .+|++.++.+ ....+..... .. ....
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~G-a~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAG-ATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCC-CEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 47999999995 999999999999999 9998865421 0000000000 00 0001
Q ss_pred EEEeccCCC---------c-----------ccCCccEEEEccCCCCc---cc---ccCCchhhHHhhHHHHHHHHHHHHH
Q 027129 84 ELIRHDVTE---------P-----------LLIEVDQIYHLACPASP---IF---YKYNPVKTIKTNVIGTLNMLGLAKR 137 (228)
Q Consensus 84 ~~~~~d~~~---------~-----------~~~~~D~vi~~a~~~~~---~~---~~~~~~~~~~~n~~~~~~l~~~~~~ 137 (228)
+-+..|+.+ . .+.++|++||+||.... .. ..++++..+++|+.++..+.+++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111111111 0 12369999999986421 11 1234567789999999999887654
Q ss_pred c---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 138 V---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 138 ~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
. +.++|++||...... .+. ....|+.+|...+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 166 ~m~~~G~ii~iss~~~~~~--------------~p~-~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~ 229 (299)
T PRK06300 166 IMNPGGSTISLTYLASMRA--------------VPG-YGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASR 229 (299)
T ss_pred HhhcCCeEEEEeehhhcCc--------------CCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccCh
Confidence 2 237888887643211 111 1126999999999999998875 3799999999988665
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=118.70 Aligned_cols=163 Identities=18% Similarity=0.127 Sum_probs=120.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCC----------c--------------------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGS----------K-------------------------- 71 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~----------~-------------------------- 71 (228)
+.++++++||||+++||..++++|.++ + .+|+++.|+.... .
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~g-a~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~ 2072 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQ-AHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDAL 2072 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcC-CEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhc
Confidence 455899999999999999999999988 6 8999999862100 0
Q ss_pred -------hh----hhhhcC-CCceEEEeccCCCccc-----------CCccEEEEccCCCCccc----ccCCchhhHHhh
Q 027129 72 -------DN----LRKWIG-HPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIF----YKYNPVKTIKTN 124 (228)
Q Consensus 72 -------~~----~~~~~~-~~~~~~~~~d~~~~~~-----------~~~D~vi~~a~~~~~~~----~~~~~~~~~~~n 124 (228)
.. +..+.. ...+.++.+|++|... .++|+|||+||...... ..+++...+++|
T Consensus 2073 ~~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813 2073 VRPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred ccccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHH
Confidence 00 001111 1357788999998632 25999999999754332 224456789999
Q ss_pred HHHHHHHHHHHHHcCC-eEEEEcccee-ccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh-CCcEEEe
Q 027129 125 VIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIA 201 (228)
Q Consensus 125 ~~~~~~l~~~~~~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~-~i~~~il 201 (228)
+.++.++++++..... +||++||... ||. ...+.|+.+|...+.+.+.++.++ +++++.+
T Consensus 2153 v~G~~~Ll~al~~~~~~~IV~~SSvag~~G~-----------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI 2215 (2582)
T TIGR02813 2153 VDGLLSLLAALNAENIKLLALFSSAAGFYGN-----------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSF 2215 (2582)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEechhhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 9999999999977655 7999999854 331 123569999999999988887765 6899999
Q ss_pred eeccccCC
Q 027129 202 RIFNTYGP 209 (228)
Q Consensus 202 Rp~~i~G~ 209 (228)
.||.+-|.
T Consensus 2216 ~wG~wdtg 2223 (2582)
T TIGR02813 2216 NWGPWDGG 2223 (2582)
T ss_pred ECCeecCC
Confidence 99887664
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-12 Score=92.29 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=120.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-C-CceEEEeccCCCccc--------CCccE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-H-PRFELIRHDVTEPLL--------IEVDQ 100 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~~--------~~~D~ 100 (228)
.++.|++||+.-.||+.++++|.+.| .+|+++.| .++.+..+.. . ..+..+++|+.+.+. ..+|.
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aG-A~ViAvaR----~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidg 80 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAG-AQVIAVAR----NEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDG 80 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcC-CEEEEEec----CHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhh
Confidence 48999999999999999999999999 99999999 5555555443 2 347889999987542 25899
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++++||...-..+. ++.+..+++|+.++.++.+... ..++ .+|.+||.+.. .+.
T Consensus 81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~----------------R~~ 144 (245)
T KOG1207|consen 81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI----------------RPL 144 (245)
T ss_pred hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc----------------ccc
Confidence 99999976543332 4456677899999988887632 2333 69999998643 244
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYG 208 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G 208 (228)
...+.|..+|++.+.+-+.++-+. .|++..+.|..+.-
T Consensus 145 ~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT 185 (245)
T KOG1207|consen 145 DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMT 185 (245)
T ss_pred CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEe
Confidence 445779999999999999988765 58888999988754
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-11 Score=93.85 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=117.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC---CceEEEeccCCCcc------------cCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH---PRFELIRHDVTEPL------------LIE 97 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~------------~~~ 97 (228)
..++|||++..||.+++..+..+| +.|.++.|+..+..+..+.+-.. ..+.+..+|..+.+ ...
T Consensus 34 ~hi~itggS~glgl~la~e~~~~g-a~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREG-ADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHcc-CceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 689999999999999999999999 99999999655444433332211 22557778885532 136
Q ss_pred ccEEEEccCCCCcccccCC----chhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|.+|+|||...+..+.+. .+..+++|..++.+++.++.. .. . +|+.+||...-
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~---------------- 176 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM---------------- 176 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh----------------
Confidence 9999999998776655543 356779999999999887542 22 1 78888886431
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
-+....+.|..+|.+..-+...+.++ +++.++..-|+.+-.|+
T Consensus 177 ~~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpG 222 (331)
T KOG1210|consen 177 LGIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPG 222 (331)
T ss_pred cCcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCc
Confidence 24445567888888777777766654 58999999999988886
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=94.01 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=118.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEeccCCCccc-----------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL-----------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~-----------~~~ 98 (228)
+.=..|||||..||++.+++|.++| .+|+++.|..++...-..++.+. ..+..+..|+++... .++
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 4668999999999999999999999 99999999655544333333332 357778888887652 257
Q ss_pred cEEEEccCCCC--cccccC----CchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPAS--PIFYKY----NPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 99 D~vi~~a~~~~--~~~~~~----~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
-++|||+|... |..+.+ .....+.+|+.++..+.+.. .+.+. -+|++||...-
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~---------------- 191 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL---------------- 191 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc----------------
Confidence 78999999876 322222 23456678888877776654 33333 69999997532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~~ 213 (228)
.|..-.+.|+.+|...+.+-+.+.+++ ||.+..+-|..|-++....
T Consensus 192 ~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~ 240 (312)
T KOG1014|consen 192 IPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKY 240 (312)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccccc
Confidence 344445789999999888888777664 8999999999988875443
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-10 Score=85.23 Aligned_cols=148 Identities=23% Similarity=0.263 Sum_probs=108.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccC-----CCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV-----TEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~D~vi~~a~~ 107 (228)
-..++.|++||.|.++++.-...+ +.|..+.|+..+.. +..+. ..+.+.++|. ++....++..++.+++.
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv-~svgilsen~~k~~--l~sw~--~~vswh~gnsfssn~~k~~l~g~t~v~e~~gg 127 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVV-HSVGILSENENKQT--LSSWP--TYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGG 127 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhc-eeeeEeecccCcch--hhCCC--cccchhhccccccCcchhhhcCCcccHHHhcC
Confidence 368899999999999999999999 99999999655332 22222 2444444444 34444567777777752
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
..+.....++|-+..++-.+++.+.|+ +|+|+|... || -+..-.+.|-..|.++|..
T Consensus 128 ------fgn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~---------------~~~~i~rGY~~gKR~AE~E 185 (283)
T KOG4288|consen 128 ------FGNIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FG---------------LPPLIPRGYIEGKREAEAE 185 (283)
T ss_pred ------ccchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cC---------------CCCccchhhhccchHHHHH
Confidence 234456678999999999999999998 899999863 21 1222224799999999988
Q ss_pred HHHHHHHhCCcEEEeeeccccCCC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+... ++++-+++|||.+||..
T Consensus 186 ll~~---~~~rgiilRPGFiyg~R 206 (283)
T KOG4288|consen 186 LLKK---FRFRGIILRPGFIYGTR 206 (283)
T ss_pred HHHh---cCCCceeeccceeeccc
Confidence 7653 46888999999999984
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=87.25 Aligned_cols=171 Identities=14% Similarity=0.033 Sum_probs=107.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhcCC-CceEEEec-cCC--CcccCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRH-DVT--EPLLIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~-d~~--~~~~~~~D~vi~~ 104 (228)
.+|+||.|+|++|.||..++..|...+ ..++.++++. .......++.+. ....+... |.. .....++|+||++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 348899999999999999999998554 2789999982 222111111110 12222211 111 2456799999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC--CCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--HPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~--~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
+|... ....+....+..|+..++++++++++++. ++|+++|-.+-.-..- ..+.+. ..+.+...||.+-.
T Consensus 84 aG~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~-----sg~p~~~viG~g~L 156 (321)
T PTZ00325 84 AGVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKA-----GVYDPRKLFGVTTL 156 (321)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhc-----cCCChhheeechhH
Confidence 98643 22344567789999999999999999998 8999998765220000 000111 33444456777643
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
-.-++-...++..+++..-++ +.|+|.-
T Consensus 157 Ds~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 157 DVVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred HHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 333443444566788888887 7788853
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-10 Score=84.25 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=108.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 98 (228)
.+-++|||++..||..++..+.++++ ..+++..|.... .+.+..... ..+....+|++... ..+-
T Consensus 6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~gkr 83 (253)
T KOG1204|consen 6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGGKR 83 (253)
T ss_pred ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence 46789999999999999999988873 233444443222 111110000 12333444444332 1269
Q ss_pred cEEEEccCCCCccccc-------CCchhhHHhhHHHHHHHHHHHH----HcCC--eEEEEccceeccCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK-------YNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~-------~~~~~~~~~n~~~~~~l~~~~~----~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
|+|||+||...+.... +.+..+++.|+.++..+...+. +... -+|++||...-
T Consensus 84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav-------------- 149 (253)
T KOG1204|consen 84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV-------------- 149 (253)
T ss_pred eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh--------------
Confidence 9999999987654322 2356788999999988877553 2322 48999998643
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
.|+.....|+.+|++.+++.+.++.+- ++.+..++||.+--+.
T Consensus 150 --~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~m 194 (253)
T KOG1204|consen 150 --RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQM 194 (253)
T ss_pred --ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchh
Confidence 466777889999999999999997653 7888999999886654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-09 Score=77.19 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=58.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------cC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~ 96 (228)
..+++++||||+++||+++++.|.+.| ++|++++|......+....+.. ...+..++.|+++.. +.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 347899999999999999999999999 9999999853322111122211 234667888988752 23
Q ss_pred CccEEEEccCCCCc
Q 027129 97 EVDQIYHLACPASP 110 (228)
Q Consensus 97 ~~D~vi~~a~~~~~ 110 (228)
++|++||+||....
T Consensus 93 ~iDilVnnAG~~~~ 106 (169)
T PRK06720 93 RIDMLFQNAGLYKI 106 (169)
T ss_pred CCCEEEECCCcCCC
Confidence 69999999997653
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=80.04 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=113.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~D 99 (228)
+...+||||.+.+|++.++.|.+.| ..|.+++-..++..+..+++. .++-+...|++.+. +.+.|
T Consensus 9 glvalvtggasglg~ataerlakqg-asv~lldlp~skg~~vakelg--~~~vf~padvtsekdv~aala~ak~kfgrld 85 (260)
T KOG1199|consen 9 GLVALVTGGASGLGKATAERLAKQG-ASVALLDLPQSKGADVAKELG--GKVVFTPADVTSEKDVRAALAKAKAKFGRLD 85 (260)
T ss_pred CeeEEeecCcccccHHHHHHHHhcC-ceEEEEeCCcccchHHHHHhC--CceEEeccccCcHHHHHHHHHHHHhhcccee
Confidence 6688999999999999999999999 999999987777666555543 36788888998763 23799
Q ss_pred EEEEccCCCCcc----------cccCCchhhHHhhHHHHHHHHHHHHH--------c-CCe--EEEEccceeccCCCCCC
Q 027129 100 QIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKR--------V-GAR--ILLTSTSEVYGDPLVHP 158 (228)
Q Consensus 100 ~vi~~a~~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~--------~-~~r--~i~~Ss~~~y~~~~~~~ 158 (228)
..++|||+.... ...++..+.+++|+.++.|+++.... . |.| +|...|...|...
T Consensus 86 ~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq---- 161 (260)
T KOG1199|consen 86 ALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQ---- 161 (260)
T ss_pred eeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCc----
Confidence 999999975321 11134556778999999999886431 1 224 6667777666433
Q ss_pred CCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 159 ~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.....|+.||..+--+..-.+++ .||+++.+-||.+--|
T Consensus 162 ------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tp 203 (260)
T KOG1199|consen 162 ------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTP 203 (260)
T ss_pred ------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCCh
Confidence 23356888887654443333333 3899999998876555
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=82.91 Aligned_cols=169 Identities=11% Similarity=-0.019 Sum_probs=109.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC-CceEEEe-ccCC--CcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR-HDVT--EPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~-~d~~--~~~~~~~D~vi~~a~ 106 (228)
..||.|+|++|.||..++..|...+- .+++++++.. ......++.+. ....... .+.+ ..++.++|+||++||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 36999999999999999999986652 5899999855 11111121111 1112221 1111 235679999999999
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.... ........++.|...++++.+.+++++. ++|+++|--+=+ ..+...........+.+...||.++.-.++
T Consensus 96 ~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~---~~~i~t~~~~~~s~~p~~~viG~~~LDs~R 170 (323)
T PLN00106 96 VPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNS---TVPIAAEVLKKAGVYDPKKLFGVTTLDVVR 170 (323)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccc---cHHHHHHHHHHcCCCCcceEEEEecchHHH
Confidence 6433 2345567889999999999999999997 777777743210 000000000111345555678888877778
Q ss_pred HHHHHHHHhCCcEEEeeeccccC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
+-..+++.++++..-+. +.|+|
T Consensus 171 l~~~lA~~lgv~~~~V~-~~ViG 192 (323)
T PLN00106 171 ANTFVAEKKGLDPADVD-VPVVG 192 (323)
T ss_pred HHHHHHHHhCCChhheE-EEEEE
Confidence 87788888899888886 44444
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=78.04 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=114.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC----eEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCccc--------
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN----EVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~----~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~-------- 95 (228)
|.++|||+++.||.+++.+|++..+. ++++..|+.++.++.+.++.. ..++++++.|+++...
T Consensus 4 KvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di 83 (341)
T KOG1478|consen 4 KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDI 83 (341)
T ss_pred eEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHH
Confidence 67899999999999999999998633 566667766666665555442 3578899999998643
Q ss_pred ----CCccEEEEccCCCCcc-------------------------------cccCCchhhHHhhHHHHHHHHHHHHHc--
Q 027129 96 ----IEVDQIYHLACPASPI-------------------------------FYKYNPVKTIKTNVIGTLNMLGLAKRV-- 138 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~-------------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~~-- 138 (228)
.+.|.|+-+||.+..+ .+.++...+++.|+.|..-+++.+...
T Consensus 84 ~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll~ 163 (341)
T KOG1478|consen 84 KQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLC 163 (341)
T ss_pred HHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHhh
Confidence 3799999999885421 122345678899999998888766442
Q ss_pred --CC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 139 --GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 139 --~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
.. ++|.+||...-.. . ++=++ ........+|..||.+.+.+--...+. .|+.-.++-||....
T Consensus 164 ~~~~~~lvwtSS~~a~kk--~--lsleD---~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt 232 (341)
T KOG1478|consen 164 HSDNPQLVWTSSRMARKK--N--LSLED---FQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT 232 (341)
T ss_pred cCCCCeEEEEeecccccc--c--CCHHH---HhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence 22 7999999753111 1 11111 122333456999999998876655443 367777777776544
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=76.26 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=66.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
|+++||||+||+|. +++.|.+.| ++|.++.|+................+..+.+|+.+... .++|+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G-~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG-FHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc-CEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 68999999988775 999999999 99999988432211111112122467788889988632 24677
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCe-----EEEEccc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-----ILLTSTS 148 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r-----~i~~Ss~ 148 (228)
+|+.+ +..++.++..+|++.+++ |+++=++
T Consensus 79 lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 79 AVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred EEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 77644 344677999999988854 8886544
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-07 Score=75.21 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=112.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-C-----eEEEEcCCCCC--CchhhhhhcCC-----CceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 98 (228)
.+||.|+|++|.+|..++..|+..+- . ++++++..... ......++.+. ..+... . -...++.++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~-~~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D-DPNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c-CcHHHhCCC
Confidence 46899999999999999999987763 3 79999884332 22222222111 122222 1 123456789
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEccce---eccCCCCCCCCCCCCCCCCC-CC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSE---VYGDPLVHPQDESYWGNVNP-IG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss~~---~y~~~~~~~~~e~~~~~~~~-~~ 171 (228)
|+||.+||.... ...+....++.|....+.+...+.+++ . .+|.+|.-. +|-- ... .+ ..
T Consensus 80 DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~------~k~-----sg~~p 146 (322)
T cd01338 80 DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA------MKN-----APDIP 146 (322)
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH------HHH-----cCCCC
Confidence 999999986432 234556778999999999999998876 3 567776421 0100 000 21 33
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+...|+.++...+++...+++.++++...+|...|||+.
T Consensus 147 ~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 147 PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 345688899999999999999999999999988999986
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=76.35 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=73.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCC--chhhhhhcCCC---ceEEEeccCCCcccCCccEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGS--KDNLRKWIGHP---RFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~--~~~~~~~~~~~---~~~~~~~d~~~~~~~~~D~v 101 (228)
.+|+||||+|++|++++..|+..+- .+|++++++.... .....++.+.. .-+.....-...++.++|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 5799999999999999999988541 4899999854321 11111111000 00111011112345689999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcc
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 147 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss 147 (228)
||+||.... ...+..+.++.|+...+.+...+.++. . .+|.+|.
T Consensus 83 I~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 83 ILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999996532 234457888999999999999988874 3 5666775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=78.74 Aligned_cols=93 Identities=28% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEeccCCCcc-----cCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
||+|+|+|+ |++|+.++..|.++++.+|++.+| +.+.+.+.... .+++..+.|..+.. ..+.|+||++
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdR----s~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADR----SKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeC----CHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 689999998 999999999999998899999999 55555544332 37888999988863 3478999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
+.... ..+++++|.++|+.+|=+|-
T Consensus 76 ~p~~~------------------~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 76 APPFV------------------DLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred CCchh------------------hHHHHHHHHHhCCCEEEccc
Confidence 84211 13778888888877665554
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-06 Score=72.49 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=54.3
Q ss_pred cCCCEEEEecCcchhHHH--HHHHHHhcCCCeEEEEcCCCCCCc-----------hhhhhhcCC--CceEEEeccCCCcc
Q 027129 30 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWIGH--PRFELIRHDVTEPL 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~~~--~~~~~~~~d~~~~~ 94 (228)
..+|++||||+++.+|.+ +++.| ..| .+|+++.+...... +........ ..+..+.+|+++..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~G-A~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAG-ADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcC-CeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 446999999999999999 89999 999 88888875322111 112222211 23567889998863
Q ss_pred c------------CCccEEEEccCCC
Q 027129 95 L------------IEVDQIYHLACPA 108 (228)
Q Consensus 95 ~------------~~~D~vi~~a~~~ 108 (228)
. .++|++||++|..
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 2 3699999999876
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=71.46 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=74.2
Q ss_pred CEEEEecCcchhHHHHHHHHHh-cC-CCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCC--CcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLME-NE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVT--EPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~-~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~--~~~~~~~D~vi~~a~~ 107 (228)
||++|+||+|.+|++++..|.. .+ .+.+++++|+.. ......++........+.+ +-. .....++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 7899999999999999998854 22 168888888532 2111112211111112222 111 2345689999999986
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~ 148 (228)
... ........+..|......+++.+++++. ++|.+.|-
T Consensus 80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 432 2234567789999999999999999987 67666664
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=63.07 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=76.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
|||.|+|++|.+|.+++..|...+- .+++++++..........++. ...........-......++|+||.++|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 7899999999999999999998863 789999994332221111111 111222222223344567999999999864
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
. ....+....++.|....+.+.+.+.+++. .++.+|.
T Consensus 81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 3 23345667789999999999999999875 4555543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-06 Score=68.69 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=49.8
Q ss_pred CCCEEEEecCc----------------chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec--cCCC
Q 027129 31 SNMRILVTGGA----------------GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH--DVTE 92 (228)
Q Consensus 31 ~~~~vlItGat----------------G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--d~~~ 92 (228)
.+|+|+||+|. ||+|.+++++|++.| ++|+++++......... .....+..+.. |+.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~G-a~V~li~g~~~~~~~~~---~~~~~~~~V~s~~d~~~ 77 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKG-AHVIYLHGYFAEKPNDI---NNQLELHPFEGIIDLQD 77 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCC-CeEEEEeCCCcCCCccc---CCceeEEEEecHHHHHH
Confidence 47999999875 999999999999999 99999987422111110 00112233333 3332
Q ss_pred c---cc--CCccEEEEccCCCCc
Q 027129 93 P---LL--IEVDQIYHLACPASP 110 (228)
Q Consensus 93 ~---~~--~~~D~vi~~a~~~~~ 110 (228)
. .+ .++|+|||+|+....
T Consensus 78 ~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 78 KMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHHHHhcccCCCEEEECccccce
Confidence 1 12 368999999998653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.2e-06 Score=68.49 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=73.7
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCC--CCCchhhhhhcCC-----CceEEEeccCCCcccCCccE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYF--TGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQ 100 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~--~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~D~ 100 (228)
+|.|+||+|.+|..++..|...+- +++++++++. +.......++.+. .... +. +-......++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-i~-~~~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-IT-TDPEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-Ee-cChHHHhCCCCE
Confidence 799999999999999999987652 2599999865 2222111111111 1121 11 122345668999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 147 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss 147 (228)
||++||... ....+....+..|....+.+...+.++. . .+|.+|-
T Consensus 80 VVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 80 AILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999999643 2334566788999999999999999884 4 5666664
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=64.73 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=74.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCC--CCCchhhhhhcC----C-CceEEEe-ccCCCcccCCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF--TGSKDNLRKWIG----H-PRFELIR-HDVTEPLLIEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~--~~~~~~~~~~~~----~-~~~~~~~-~d~~~~~~~~~D~vi~ 103 (228)
|+|.|+|++|.+|..++..|+..|. .+|++++|.. ........++.+ . ....+.. .| .....+.|+||.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 7899999999999999999999872 3599999943 221111111111 0 1122221 22 234679999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 148 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~ 148 (228)
++|... ....+....++.|......+++.+.+... ++|.+++.
T Consensus 79 tag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 79 TAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 998532 22233356778899999999999888754 67777764
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=55.69 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=58.9
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
||.|+||||++|+.+++.|.+....++..+................ ....++.-.+.....+.++|+||.|.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~---- 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH---- 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH----
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch----
Confidence 6899999999999999999997545655554433311111211111 1112222222333445789999998741
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
.....+...+.+.|+++|=+|+..-
T Consensus 77 --------------~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 77 --------------GASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp --------------HHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred --------------hHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 1224556666778888888887643
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.1e-05 Score=62.73 Aligned_cols=112 Identities=16% Similarity=0.044 Sum_probs=76.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC-CceEEEe--cc-CCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR--HD-VTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~d-~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+|++|.+|.+++-.|...+- .++++++.+ .......++.+. ....+.. .| -...+..+.|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 6899999999999999999987762 589999885 222222222221 1122222 21 112567799999999986
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 148 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~ 148 (228)
.. .........++.|....+.+.+.+.+++. .+|.+|-.
T Consensus 79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 43 22345667889999999999999998875 57777654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=63.47 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a~ 106 (228)
|+|+|+||||. |+.+++.|.+.| ++|++..+...+.... . ......+..+-+.... ..++|+||+++.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~-~---~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLY-P---IHQALTVHTGALDPQELREFLKRHSIDILVDATH 74 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCccccc-c---ccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC
Confidence 68999999999 999999999999 9999999955433221 1 1112233333332221 126999999875
Q ss_pred C
Q 027129 107 P 107 (228)
Q Consensus 107 ~ 107 (228)
+
T Consensus 75 P 75 (256)
T TIGR00715 75 P 75 (256)
T ss_pred H
Confidence 3
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=65.21 Aligned_cols=70 Identities=19% Similarity=0.370 Sum_probs=45.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-------cccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-------PLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~D~vi~~a 105 (228)
-+++=-.+|||+|++++++|++.| ++|+++.|....... ....+.++..+..+ ....++|+|||+|
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G-~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~A 89 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAG-HEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSM 89 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCC-CEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCC
Confidence 334334589999999999999999 999999874221110 11245555433222 1234689999999
Q ss_pred CCCC
Q 027129 106 CPAS 109 (228)
Q Consensus 106 ~~~~ 109 (228)
|...
T Consensus 90 Avsd 93 (229)
T PRK06732 90 AVSD 93 (229)
T ss_pred ccCC
Confidence 9754
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-06 Score=68.81 Aligned_cols=89 Identities=27% Similarity=0.294 Sum_probs=61.4
Q ss_pred EEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
|+|+|+ |++|+.+++.|.+.+.. +|++.+| +.+..+.+. ...++...+.|..+.. ..+.|+||||+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADR----NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEES----SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEEC----CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 99999999999998744 8999999 444443333 3468999999999864 34899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~S 146 (228)
+.. ....++++|.+.|+++|-+|
T Consensus 76 gp~------------------~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 76 GPF------------------FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp SGG------------------GHHHHHHHHHHHT-EEEESS
T ss_pred ccc------------------hhHHHHHHHHHhCCCeeccc
Confidence 732 11367777777777766633
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-05 Score=64.17 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=72.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCC--chhhhhhcCCC--c-eEEEeccCCCcccCCccEEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGS--KDNLRKWIGHP--R-FELIRHDVTEPLLIEVDQIY 102 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~--~~~~~~~~~~~--~-~~~~~~d~~~~~~~~~D~vi 102 (228)
+|.|+||+|.+|..++..|...+- .+++++++..... .....++.+.. . -.....+-....+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 589999999999999999987542 2699998854321 11111111110 0 00111111124566899999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcc
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 147 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss 147 (228)
++||.... ...+....++.|+...+.+...+.++. . .+|.+|.
T Consensus 81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99986432 233456788999999999999999884 4 5666664
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=64.72 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=64.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEE-eccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELI-RHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~-~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..+|+|.|.||||++|+.+++.|.+....+|..+.+...... ....... ....+.. ..++....+.++|+||.+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~-~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQ-SFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCC-CchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 346799999999999999999999885489999887433221 1111000 0001111 111222224579999987742
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCC
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP 154 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~ 154 (228)
. ....++..+ +.++++|-+|+...+.+.
T Consensus 115 ~------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 115 G------------------TTQEIIKAL-PKDLKIVDLSADFRLRDI 142 (381)
T ss_pred H------------------HHHHHHHHH-hCCCEEEEcCchhccCCc
Confidence 1 334555555 356799999999876543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=64.79 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
|++|+|.||||++|+.+++.|.+.+ ..++.++.+........ . + ...+....|.......++|+||.+++..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l-~-~---~g~~i~v~d~~~~~~~~vDvVf~A~g~g- 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL-S-F---KGKELKVEDLTTFDFSGVDIALFSAGGS- 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee-e-e---CCceeEEeeCCHHHHcCCCEEEECCChH-
Confidence 5799999999999999999999876 13557776643322211 1 1 1123444455444445899999887532
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
....++..+.+.|+++|=+|+..-+
T Consensus 75 -----------------~s~~~~~~~~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 75 -----------------VSKKYAPKAAAAGAVVIDNSSAFRM 99 (334)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCchhhc
Confidence 1134444555567777777876443
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.1e-05 Score=61.65 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=78.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++||.|+|+ |.+|..++-.|+..+- .++++++++.........++.+. ..+.....| ...+.++|+||.+|
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~--~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD--YSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC--HHHhCCCCEEEEec
Confidence 4679999998 9999999999998873 48999999655443333322211 123333222 24567999999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|... ....+....++.|....+.++..+.+++. .+|.+|-
T Consensus 82 g~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 82 GAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 8643 22345567789999999999999988765 6666664
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-06 Score=62.95 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=49.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~vi~~a 105 (228)
++++++|+||+|.+|+.+++.|.+.+ ++|+++.|+..+..+....+...........|..+. ...++|+||++.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 46899999999999999999999999 899999985322222111111111233334444432 334799999876
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
.
T Consensus 106 ~ 106 (194)
T cd01078 106 A 106 (194)
T ss_pred C
Confidence 4
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-06 Score=68.46 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=47.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.++++|+||||+|+||+.++++|... +..+++++.|...+..+...++ . ..+.. ++ +....++|+|||+++..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el-~--~~~i~--~l-~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL-G--GGKIL--SL-EEALPEADIVVWVASMP 226 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh-c--cccHH--hH-HHHHccCCEEEECCcCC
Confidence 45799999999999999999999864 4478999988433221111111 1 01111 11 13445799999999854
Q ss_pred C
Q 027129 109 S 109 (228)
Q Consensus 109 ~ 109 (228)
.
T Consensus 227 ~ 227 (340)
T PRK14982 227 K 227 (340)
T ss_pred c
Confidence 3
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=59.91 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=75.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCC---ce-EEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP---RF-ELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~---~~-~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+||.|+|| |++|+.++-.|+..+. .+++++++..........++.+.. .. ..+.++-...+..+.|+|+-.||.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~ 79 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV 79 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence 58999999 9999999999977764 489999996443332222222211 11 122222224566789999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.. .........+..|....+.+.+.+.+.+. .|+.+|-
T Consensus 80 pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 80 PR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred CC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 33 33345567789999999999999988875 5555554
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=58.00 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=53.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.++++++|.|+ |..|+.++..|...|..+|+++.|+..+.. .+........+.+...+-......++|+||++...+.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~-~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAE-ALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHH-HHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 34799999996 899999999999999667999999432222 2222223335666665544445568999999986543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.4e-05 Score=60.76 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=75.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
++|.|+|+ |.+|+.++..|+..|. ++|+++++..........++.+ .........+ .....++|+||.++|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~--~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD--YSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC--HHHhCCCCEEEEccC
Confidence 47999996 9999999999998874 5899999965543332222211 1122222222 234568999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ....+....++.|....+.+.+.+++++. .+|.+|.
T Consensus 78 ~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 78 APQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 543 22345567789999999999999998775 5676764
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0004 Score=53.65 Aligned_cols=157 Identities=15% Similarity=0.066 Sum_probs=98.2
Q ss_pred cCCCEEEEec--CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCC-ceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~----------- 95 (228)
.++|++||+| -...|+..+++.|.++| .++...-..+ +...+.+++.+.. ..-+.++|+++...
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~G-AeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQG-AELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcC-CEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 4589999999 45689999999999999 7777765532 3333444444332 23457899987632
Q ss_pred -CCccEEEEccCCCCcccccC--------CchhhHHhhHHHHHHHHHHHHH---cCCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~--------~~~~~~~~n~~~~~~l~~~~~~---~~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|.++|+.|......... ++...+++.......++++++. .|..+|-++-. |..
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYl---gs~--------- 149 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYL---GSE--------- 149 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEec---cce---------
Confidence 27999999998765332222 2233345555555566666553 23344444322 111
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeec
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIF 204 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~ 204 (228)
....-.+.-+..|+..|--++.++.+. |++++.|..|
T Consensus 150 ----r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAG 189 (259)
T COG0623 150 ----RVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAG 189 (259)
T ss_pred ----eecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeeccc
Confidence 011112457899999999999988764 6777766554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=67.08 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+|+++|+|+++ +|..+++.|++.| ++|++.++...... +....+ ....++++..|..+....++|+||+++|.
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQLKEALEEL-GELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHH-HhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 468999999877 9999999999999 99999988432211 111222 22356788888777666689999999875
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=59.04 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=76.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCC-C-----eEEEEcCCCCC--CchhhhhhcCC-----CceEEEeccCCCcccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLI 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~d~~~~~~~ 96 (228)
.+++||.|+|++|.+|..++-.|...+- . ++++++++... ......++.+. ..+.... -...+..
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~y~~~~ 79 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD--DPNVAFK 79 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec--ChHHHhC
Confidence 3467999999999999999999887652 3 79999885332 12111111111 1222221 1124567
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcc
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 147 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss 147 (228)
+.|+||-+||... ....+....++.|....+.+...+.++. . .+|.+|.
T Consensus 80 daDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 80 DADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred CCCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8999999998543 2235566788999999999999999844 2 6777774
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00015 Score=60.55 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CC---ceEEEeccCCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|++|.|+||||++|+.+++.|.+....++.++.+... ..+....... .. ...+...| +....++|+|+.|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCC--HHHhcCCCEEEECCCc
Confidence 6899999999999999999999874478877766322 1111211111 00 11122222 1233579999987631
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
.....++..+.+.|+++|=.|+..-+.
T Consensus 79 ------------------~~~~~~v~~a~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 79 ------------------GVSMDLAPQLLEAGVKVIDLSADFRLK 105 (343)
T ss_pred ------------------HHHHHHHHHHHhCCCEEEECCcccCCC
Confidence 112355555666788899999886653
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=58.49 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=75.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEe-ccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~d~~~~~~~~~D~vi~~a 105 (228)
-+||.|+|+ |.+|..++-.|+..+- .++++++.+.........++... ....+.. .|. ....++|+||.+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy--~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY--SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH--HHhCCCCEEEECC
Confidence 479999996 9999999999988763 68999998654333222222111 1112332 222 2467899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|.... ...+....++.|....+.+.+.+++++. .+|.+|-
T Consensus 80 G~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 80 GARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 86432 2344567789999999999999988864 5666664
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00031 Score=60.18 Aligned_cols=112 Identities=9% Similarity=0.049 Sum_probs=79.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-------CC-CeEEEEcCCCCCCchhhhhhcCC-----CceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-------EK-NEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-------g~-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 98 (228)
.-+|.|+|++|.+|.+++-.|+.. +- .++++++++.........++.+. ..+.+... ....+.++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~--~ye~~kda 177 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID--PYEVFQDA 177 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC--CHHHhCcC
Confidence 469999999999999999999887 41 37888888666554433333221 12222221 23567799
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHH-cCC--eEEEEcc
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA--RILLTST 147 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~--r~i~~Ss 147 (228)
|+||-.||... ....+....++.|....+.+...+.+ ++. ++|.+|-
T Consensus 178 DiVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 178 EWALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999998643 23345667889999999999999999 454 6777775
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00041 Score=57.28 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-C-----eEEEEcCCCCC--CchhhhhhcCCC-----ceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGHP-----RFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~--~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~ 98 (228)
..||.|+||+|++|.+++..|+..+- . ++++++..... ......++.+.. .+... .+ ...+..++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~da 80 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TD-PEEAFKDV 80 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cC-hHHHhCCC
Confidence 46899999999999999999988762 3 79999885422 222222222111 12221 11 22456689
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEcc
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST 147 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss 147 (228)
|+||.+||... ....+....+..|....+.+...+.++.. .++.+|-
T Consensus 81 DvVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 81 DAALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999998643 23355667889999999999999988753 4666663
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00031 Score=57.71 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=72.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCC-----CceEEEe-ccCCCcccCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~d~~~~~~~~~D~vi~~ 104 (228)
||||.|+|+ |.+|..++..|...+ . +|+++++..........++... ....+.. .|. ..+.++|+||.+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~-~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKE-LGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEEC
Confidence 689999998 999999999999887 4 8999999554432222211111 0112221 222 346789999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
++... .......+.+..|......+++.+.+... .+|.+|-
T Consensus 78 ~~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 78 AGVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 87533 22233445667899999999998887654 4666653
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=60.61 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+|++|.|+||||++|+.+++.|.+.+ ..++..+... ........ . ....+++...+ ...+.++|+||-+.+..
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~-~-~~~~l~~~~~~--~~~~~~vD~vFla~p~~ 77 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP-F-AGKNLRVREVD--SFDFSQVQLAFFAAGAA 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec-c-CCcceEEeeCC--hHHhcCCCEEEEcCCHH
Confidence 46899999999999999999999654 1344455332 11111111 1 11123333322 22245799999876411
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
....++..+.+.|+++|=.|+..-+
T Consensus 78 ------------------~s~~~v~~~~~~G~~VIDlS~~fR~ 102 (336)
T PRK05671 78 ------------------VSRSFAEKARAAGCSVIDLSGALPS 102 (336)
T ss_pred ------------------HHHHHHHHHHHCCCeEEECchhhcC
Confidence 1134666777778888888888654
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00037 Score=57.24 Aligned_cols=111 Identities=16% Similarity=0.037 Sum_probs=74.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCC-ceEEEe--cc-CCCcccCCccEEEEccCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP-RFELIR--HD-VTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~--~d-~~~~~~~~~D~vi~~a~~~ 108 (228)
||.|+|++|.+|.+++-.|...+- .++++++++. ......++.+.. ...+.. .+ -...++.+.|+||.+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 589999999999999999988762 5899998855 111112221111 122221 11 1134677999999999864
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccc
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS 148 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~ 148 (228)
. ....+....++.|....+.+...+.+++. .+|.+|-.
T Consensus 79 ~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 79 R--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred C--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3 22345567789999999999999988875 56666654
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.7e-05 Score=63.26 Aligned_cols=70 Identities=23% Similarity=0.244 Sum_probs=50.1
Q ss_pred cCCCEEEEecC----------------cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc
Q 027129 30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93 (228)
Q Consensus 30 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 93 (228)
..+++++|||| +|.+|.+++++|...| .+|+++.++.. .. ....+ ...|+++.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~G-a~V~~v~~~~~--~~------~~~~~--~~~dv~~~ 254 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRG-ADVTLVSGPVN--LP------TPAGV--KRIDVESA 254 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCC-CEEEEeCCCcc--cc------CCCCc--EEEccCCH
Confidence 35799999999 8999999999999999 99999988431 10 01122 23344442
Q ss_pred ---------ccCCccEEEEccCCCCc
Q 027129 94 ---------LLIEVDQIYHLACPASP 110 (228)
Q Consensus 94 ---------~~~~~D~vi~~a~~~~~ 110 (228)
.+.++|++||+||+...
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEccccccc
Confidence 23469999999997643
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=58.97 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC----------CceEEEeccCCCcccCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~D~v 101 (228)
+++|.|+||||++|+.+++.|.+....+++++.+............... ..+.+...|. ....++|+|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~DvV 80 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDIV 80 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCEE
Confidence 5799999999999999999999876458888845332221111111000 1112211111 122478998
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
+.+... .....+.+.+.+.|+++|-.|+..
T Consensus 81 f~a~p~------------------~~s~~~~~~~~~~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALPS------------------DVAGEVEEEFAKAGKPVFSNASAH 110 (349)
T ss_pred EEeCCh------------------hHHHHHHHHHHHCCCEEEECCchh
Confidence 876531 011344466777788877777764
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=58.95 Aligned_cols=162 Identities=11% Similarity=-0.036 Sum_probs=101.2
Q ss_pred CCEEEEecCcchhHHHHHH-----HHHhcC---CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVD-----KLMENE---KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~-----~L~~~g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
..+.++-+++|+|+..|.. ++-+-+ .|.|+++.|.+.+. ++.+-..|+.-.. ..+|..++
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------ritw~el~~~Gip-~sc~a~vn 79 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------RITWPELDFPGIP-ISCVAGVN 79 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------ccccchhcCCCCc-eehHHHHh
Confidence 3467777899999988776 332222 18999999954433 3444444433221 14555555
Q ss_pred ccCCCCccc--cc--CCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 104 LACPASPIF--YK--YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 104 ~a~~~~~~~--~~--~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
++|.-.... .+ .-..++....+..++.+++++.+... .+|.+|..++|-......++|+ .+...++..
T Consensus 80 a~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~-----~~~qgfd~~ 154 (315)
T KOG3019|consen 80 AVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK-----IVHQGFDIL 154 (315)
T ss_pred hhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc-----cccCChHHH
Confidence 554321111 11 11234556677788999999988764 4999999999977666777777 455555555
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
...-.+-|...+.-.+ ..+++++|.|.|.|.+-.
T Consensus 155 srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGG 188 (315)
T KOG3019|consen 155 SRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGG 188 (315)
T ss_pred HHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCc
Confidence 5444444444443322 489999999999998643
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=51.71 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=53.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC-C-CchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-G-SKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 110 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~ 110 (228)
|+|.|+|++|.+|+.+++.+.+....++.+...... . .....-.+.........-.+-.+..+..+|++|.+.-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~---- 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN---- 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC----
Confidence 689999999999999999999954377666544322 1 1111111111111111111222233345999999862
Q ss_pred ccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
-......++++.++++.+|.-+|
T Consensus 77 --------------p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 77 --------------PDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp --------------HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred --------------hHHhHHHHHHHHhCCCCEEEECC
Confidence 23445677888888877664444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00051 Score=57.34 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=75.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEe-ccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~d~~~~~~~~~D~vi~~a~ 106 (228)
+||.|+|+ |.+|..++-.|+..+- .++++++.+.........++.+. ....+.. .| -.+..++|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d--y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD--YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC--HHHhCCCCEEEECCC
Confidence 69999996 9999999999988763 58999998654433333222221 1123322 12 234678999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.... ...+....+..|....+.+.+.+.+++. .+|.+|-
T Consensus 115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6432 2344567788999999999999988764 5666664
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00065 Score=55.77 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=75.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC------CCceEEEeccCCCcccCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG------HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
||.|+|+ |.+|..++-.|+..+- .++++++...........++.. ...+.....| ..+..++|+||-+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence 5889998 9999999999988763 5899999865544333333222 1123343333 245678999999998
Q ss_pred CCCcccccCC--chhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYN--PVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
....+ ... ....++.|....+.+...+.+++. .+|.+|-
T Consensus 78 ~~~kp--g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 78 PSIDP--GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 64322 222 367789999999999999998875 4555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=58.48 Aligned_cols=110 Identities=22% Similarity=0.290 Sum_probs=72.3
Q ss_pred chhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc------------------------hhhhhhcC
Q 027129 24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKWIG 79 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------------~~~~~~~~ 79 (228)
..++.+. .++|+|+|+ |.+|.++++.|.+.|..++++++...-... +.++++.+
T Consensus 17 ~~Q~~L~-~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp 94 (339)
T PRK07688 17 EGQQKLR-EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS 94 (339)
T ss_pred HHHHHhc-CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC
Confidence 3445554 689999996 999999999999999669999988431100 11122222
Q ss_pred CCceEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 80 HPRFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 80 ~~~~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
...++....+++.. .+.+.|+||.+.. |...-..+.++|.+.++.+|+.+..+.||
T Consensus 95 ~v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~ln~~~~~~~iP~i~~~~~g~~G 154 (339)
T PRK07688 95 DVRVEAIVQDVTAEELEELVTGVDLIIDATD-----------------NFETRFIVNDAAQKYGIPWIYGACVGSYG 154 (339)
T ss_pred CcEEEEEeccCCHHHHHHHHcCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeeeeeee
Confidence 33455555555532 2347899998752 22233466778888888899888777665
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00054 Score=57.00 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=71.6
Q ss_pred CcchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc------------------------hhhhhh
Q 027129 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKW 77 (228)
Q Consensus 22 ~~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------------~~~~~~ 77 (228)
....++.+. .++|+|+|+ |.+|.++++.|.+.|..+++++++..-... +.+.++
T Consensus 15 G~~~Q~~L~-~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i 92 (338)
T PRK12475 15 GEEGQRKIR-EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI 92 (338)
T ss_pred CHHHHHhhc-CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH
Confidence 344455555 689999996 889999999999999558888888531100 111222
Q ss_pred cCCCceEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 78 IGHPRFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 78 ~~~~~~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
.....++.+..+++.. ...+.|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 93 np~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D-----------------~~~~r~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 93 NSEVEIVPVVTDVTVEELEELVKEVDLIIDATD-----------------NFDTRLLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred CCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 2334455666665532 3357999998762 11122345577888888888877666555
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=57.54 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=59.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC---eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..++|.|.||||++|+.+++.|.+.+ | ++..+...+.... .... ...++...++....+.++|+||.+++.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~-hP~~~l~~las~rsaGk-~~~~----~~~~~~v~~~~~~~~~~~D~vf~a~p~ 79 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRD-FPYSSLKMLASARSAGK-KVTF----EGRDYTVEELTEDSFDGVDIALFSAGG 79 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCC-CCcceEEEEEccCCCCC-eeee----cCceeEEEeCCHHHHcCCCEEEECCCc
Confidence 35799999999999999999998866 4 4444433211111 1100 112333333333344679999988752
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
.. ...+...+.+.|+++|=.|+..-+.+
T Consensus 80 ~~------------------s~~~~~~~~~~g~~VIDlS~~fR~~~ 107 (344)
T PLN02383 80 SI------------------SKKFGPIAVDKGAVVVDNSSAFRMEE 107 (344)
T ss_pred HH------------------HHHHHHHHHhCCCEEEECCchhhcCC
Confidence 21 12444445556778888888865543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00074 Score=54.65 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------hhhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|.++++.|...|..+|++++...-... +.++++.+...++....+
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 579999985 999999999999999888988876432211 112233334456666666
Q ss_pred CCCcccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++...+.+.|+||.+.. +......+-++|++.++.||...+.+.||
T Consensus 98 ~~~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 98 LTTDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGIKFISADTRGLFG 143 (286)
T ss_pred CCHHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCCEEEEEeccccEE
Confidence 55556668998887652 22233456688988888999988877766
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00039 Score=58.10 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=59.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcCC--C--ceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGH--P--RFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~~--~--~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|+|.|+||||++|+.+++.|.+....++..+ ++.+... ......... . ...+...|..+ ...++|+||.|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sag-k~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAG-KPVSEVHPHLRGLVDLNLEPIDEEE-IAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcC-CChHHhCccccccCCceeecCCHHH-hhcCCCEEEECCCc
Confidence 5899999999999999999998744777744 4422111 111111110 0 11222222211 11379999988742
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
. ....++..+.+.|+++|=+|+..-+.
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 79 G------------------VSAELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred h------------------HHHHHHHHHHhCCCEEEeCChhhhcC
Confidence 1 22455566666788999999886554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00067 Score=57.19 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=74.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC------eEEEE--cCCCCCCchhhhhhcCC-----CceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN------EVIVV--DNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~------~V~~~--~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 98 (228)
.-||.|+||+|.+|.+++-.|...+-. .++++ +++.........++.+. ..+.+... ...++.++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~--~y~~~kda 121 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID--PYEVFEDA 121 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC--CHHHhCCC
Confidence 479999999999999999999887632 23333 55444433333222221 12222222 23566799
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcc
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST 147 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss 147 (228)
|+||.+||... ....+....+..|....+.+...+.++. . ++|.+|-
T Consensus 122 DIVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 122 DWALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99999998643 2234566788999999999999999854 3 6777774
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=58.86 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=43.1
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCe---EEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
+|.|+||||++|+.+++.|.+.+ |. +..+.+....... .. + ...+....|+....+.++|+||.+++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~-hp~~~l~~~as~~~~g~~-~~-~---~~~~~~~~~~~~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERN-FPIDKLVLLASDRSAGRK-VT-F---KGKELEVNEAKIESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCC-CChhhEEEEeccccCCCe-ee-e---CCeeEEEEeCChHHhcCCCEEEECCC
Confidence 58999999999999999998876 44 3344453222111 11 1 12345555554445568999999886
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.002 Score=50.60 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=65.6
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~ 83 (228)
++.+. ..+|+|.| .|.+|.++++.|.+.|..++++++...-.... .+.++.+..++
T Consensus 6 ~~~L~-~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V 83 (231)
T cd00755 6 LEKLR-NAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEV 83 (231)
T ss_pred HHHHh-CCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEE
Confidence 33444 57999998 59999999999999997788888763322111 11111222344
Q ss_pred EEEeccCCCc-----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 84 ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 84 ~~~~~d~~~~-----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
+.+...++.. ...++|+||.+.. +...-..+.++|++.++++|...+.+.
T Consensus 84 ~~~~~~i~~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 84 DAVEEFLTPDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred EEeeeecCHhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 4444443321 1236899998762 122335677889988888877655543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=51.20 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=69.4
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCc
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPR 82 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~ 82 (228)
.++.+. ..+|+|.| .|.+|..+++.|...|..++++++...-.... .+.++.+...
T Consensus 15 ~q~kl~-~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~ 92 (202)
T TIGR02356 15 GQQRLL-NSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQ 92 (202)
T ss_pred HHHHhc-CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCE
Confidence 344444 68999998 59999999999999996689999875221111 1112222234
Q ss_pred eEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 83 FELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 83 ~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.+...++.. .+.+.|+||.+.. |...-..+.+.|++.++.+|+.+..+.+|
T Consensus 93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 93 VTALKERVTAENLELLINNVDLVLDCTD-----------------NFATRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred EEEehhcCCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 44444444332 2457999998763 12222456678888888888888766554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0008 Score=56.16 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=57.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC------CCc--eEEEeccCCCcccCCccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------HPR--FELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~~~--~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
++|.|+|++|++|+.+++.|......++..+................ ... .++...+.......++|+|+.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999999999999999988876535777774422211111111110 000 1111111111223578999987
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
.... ....+...+.+.|+++|..|+..-+.+
T Consensus 81 ~p~~------------------~s~~~~~~~~~~G~~VIDlsg~fR~~~ 111 (341)
T TIGR00978 81 LPSE------------------VAEEVEPKLAEAGKPVFSNASNHRMDP 111 (341)
T ss_pred CCHH------------------HHHHHHHHHHHCCCEEEECChhhccCC
Confidence 7311 112333566667888888888865543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=47.14 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=65.3
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEeccCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHDVT 91 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d~~ 91 (228)
+|+|.|+ |.+|..+++.|...|..++++++...-.... .++++.+...++....++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899995 9999999999999996688888764221111 1111222234444544444
Q ss_pred Cc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 92 EP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 92 ~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
.. ...++|+||.+.. +...-..+.++|++.++.+|..++.+.+|
T Consensus 80 ~~~~~~~~~~~diVi~~~d-----------------~~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAID-----------------NIAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 32 2458999998763 12334567788999888888888875443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00094 Score=47.96 Aligned_cols=103 Identities=20% Similarity=0.351 Sum_probs=65.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
.++|+|.|+ |.+|..+++.|...|..++++++...-.... .+.+..+...++....+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 478999985 9999999999999996688888763222111 11122223355666666
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.. .+.++|+||.+.. +...-..+.+.|++.++.+|..+..+.+|
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVD-----------------SLAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESS-----------------SHHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred cccccccccccCCCEEEEecC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 5322 2237999998763 12333467778999888888887765544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0014 Score=50.34 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=69.3
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------hhhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~ 83 (228)
++.+. .++|+|.|+ |.+|.++++.|...|..++++++...-... +.++++.+...+
T Consensus 16 Q~~L~-~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i 93 (197)
T cd01492 16 QKRLR-SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKV 93 (197)
T ss_pred HHHHH-hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEE
Confidence 33444 689999996 559999999999999778988876422111 011222233345
Q ss_pred EEEeccCCC---cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 84 ELIRHDVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 84 ~~~~~d~~~---~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
+.....+.+ ..+.++|+||.+.. +......+-++|++.++.+|+.++.+.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~dvVi~~~~-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 94 SVDTDDISEKPEEFFSQFDVVVATEL-----------------SRAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred EEEecCccccHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 555444432 12357899987642 122334566788998888998888776653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=50.68 Aligned_cols=109 Identities=13% Similarity=0.252 Sum_probs=69.6
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch------------------------hhhhhcCCC
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------------------------NLRKWIGHP 81 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------------------------~~~~~~~~~ 81 (228)
++.+. ..+|+|.|++| +|.++++.|...|..++++++...-...+ .++++.+..
T Consensus 14 q~~L~-~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v 91 (198)
T cd01485 14 QNKLR-SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNV 91 (198)
T ss_pred HHHHh-hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCC
Confidence 34444 58999999755 99999999999998889998764221110 012222333
Q ss_pred ceEEEeccCCC------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 82 RFELIRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 82 ~~~~~~~d~~~------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
+++.+..+..+ ..+.++|+||.+.. +......+-+.|++.++.+|+.++.+.||.
T Consensus 92 ~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 92 KLSIVEEDSLSNDSNIEEYLQKFTLVIATEE-----------------NYERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred EEEEEecccccchhhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 45555544431 12347888887642 122334566889998889999988877764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=53.03 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=73.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|+|.|+|+ |.+|..++..|+..|. ++|.+++++.........++... ........|. ....++|+||.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 58999997 9999999999998873 68999999654333222222211 1122222222 345689999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ...+.......|....+.+.+.+++.+. .++.++.
T Consensus 78 ~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 78 NQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 432 2344556778899999999999888765 4555543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0018 Score=51.32 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=68.1
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh----------------------hhhcCCCc
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----------------------RKWIGHPR 82 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~----------------------~~~~~~~~ 82 (228)
.++.+. ..+|+|.|+ |.+|..+++.|.+.|..++++++...-...... .++.+...
T Consensus 18 ~q~~L~-~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~ 95 (240)
T TIGR02355 18 GQEALK-ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIA 95 (240)
T ss_pred HHHHHh-CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcE
Confidence 344444 589999985 999999999999999778888877433321111 11122233
Q ss_pred eEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 83 FELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 83 ~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.+...++.. .+.+.|+||.+.. |...-..+-++|.+.++.+|+-++.+.+|
T Consensus 96 i~~~~~~i~~~~~~~~~~~~DlVvd~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 96 INPINAKLDDAELAALIAEHDIVVDCTD-----------------NVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred EEEEeccCCHHHHHHHhhcCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 44444333321 2347899998762 12223456678888888888876554444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00098 Score=57.65 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-CccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~D~vi~~a~~~ 108 (228)
.+++++|+|++| +|.+.++.|.+.| ++|++.++...........+. ...+.+..+........ ++|+||...|+.
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G-~~V~~~d~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLG-ANVTVNDGKPFSENPEAQELL-EEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCC-CEEEEEcCCCccchhHHHHHH-hcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 368999999977 9999999999999 999999875432222222222 22455544332222222 389999988854
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00088 Score=52.51 Aligned_cols=68 Identities=18% Similarity=0.419 Sum_probs=52.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
|+++|.|+ |.+|+.+++.|.++| ++|+++++ ..+...+... ......+.+|-++... .+.|+++-+.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g-~~Vv~Id~----d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEG-HNVVLIDR----DEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCC-CceEEEEc----CHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68899985 999999999999999 99999999 4444444222 3467888999988643 3799988766
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0032 Score=52.04 Aligned_cols=112 Identities=11% Similarity=0.087 Sum_probs=72.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-----CceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.++|.|+|| |.+|..++..|...+-.++++++++.........++... ....+...+ .-..+.++|+||.++|
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~-d~~~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTN-NYEDIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCC-CHHHhCCCCEEEECCC
Confidence 579999997 999999999888777457999998654332211111110 112222211 1135678999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.... ........+..|....+.+++.+.+... .+|++|-
T Consensus 83 ~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 83 VQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5432 2334456778888888899888888764 4666654
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=53.10 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=27.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+|+|.|+|++|.+|+.+++.+.+....+++++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d 34 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVD 34 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4799999999999999999888753377777544
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0022 Score=52.68 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=70.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCC-----CceEEE-eccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~d~~~~~~~~~D~vi~~a 105 (228)
|+|.|+|+ |.+|..++..|+..| + +|+++++..........++.+. ....+. ..|.. ...++|+||-++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g-~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKE-LADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITA 77 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcC-CCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcC
Confidence 68999996 999999999999987 5 7999998444222121111111 011121 12322 256899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|... .........+..|......+++.+.+++. .+|.+|.
T Consensus 78 g~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 78 GLPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8432 22234446778899999999998887754 5666665
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=51.21 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~ 83 (228)
++.+. ..+|+|.| .|.+|.++++.|...|..++++++...-.... .++++.+...+
T Consensus 16 q~~L~-~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i 93 (228)
T cd00757 16 QEKLK-NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEI 93 (228)
T ss_pred HHHHh-CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEE
Confidence 44444 68999998 59999999999999997788888653221111 11111122345
Q ss_pred EEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 84 ELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 84 ~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
+.+..+++.. .+.++|+||.+.. |...-..+.++|++.++.+|+.+..+.+|
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTD-----------------NFATRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 5555444321 2347999998873 11222456678888888888877655443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0024 Score=50.79 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=67.3
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCc
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPR 82 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~ 82 (228)
.++.+. ..+|+|.|+ |.+|..+++.|...|..++++++...-.... .+.++.+...
T Consensus 26 ~Q~~L~-~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~ 103 (245)
T PRK05690 26 GQEKLK-AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIA 103 (245)
T ss_pred HHHHhc-CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCE
Confidence 344444 689999997 9999999999999997788888663322111 1112222334
Q ss_pred eEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 83 FELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 83 ~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
++.+...++.. .+.++|+||.+.. |...-..+-++|+++++.+|+.+..+.
T Consensus 104 i~~~~~~i~~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~ 158 (245)
T PRK05690 104 IETINARLDDDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKKPLVSGAAIRM 158 (245)
T ss_pred EEEEeccCCHHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCCEEEEeeeccC
Confidence 55555544432 2347999998762 122224566788888888887655443
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=54.02 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=61.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..++|.|.||||++|+.+++.|.+. ...++..+........ ... +.. ..+.+. +.....+.++|++|.+++..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~-~~~-~~~-~~~~v~--~~~~~~~~~~Dvvf~a~p~~ 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE-TLR-FGG-KSVTVQ--DAAEFDWSQAQLAFFVAGRE 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc-eEE-ECC-cceEEE--eCchhhccCCCEEEECCCHH
Confidence 4679999999999999999999884 3357766654322111 111 111 122222 33333345789999877421
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
....++..+.+.|+++|=.|+..-+.+
T Consensus 78 ------------------~s~~~~~~~~~~g~~VIDlS~~fRl~~ 104 (336)
T PRK08040 78 ------------------ASAAYAEEATNAGCLVIDSSGLFALEP 104 (336)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECChHhcCCC
Confidence 223555556667888888888876544
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=52.27 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=73.0
Q ss_pred EEEecCcchhHHHHHHHHHhcC--C-CeEEEEcCCCCCCchhhhhhcC---CC-ceEEEeccCCCcccCCccEEEEccCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENE--K-NEVIVVDNYFTGSKDNLRKWIG---HP-RFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g--~-~~V~~~~r~~~~~~~~~~~~~~---~~-~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|.|+||+|.+|..++..|+..+ . .+|+++++...........+.. .. ..++...+-....+.++|+||.+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 4789998999999999998776 3 6899999865443322222211 11 12222222113556799999999986
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ...........|....+.+++.+++... .+|.+|-
T Consensus 81 ~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 81 GRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 432 2233445678899999999999988765 5666653
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=52.79 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=72.4
Q ss_pred EEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
|.|+|+ |.+|..++-.|+..+- +++++++++.........++.+. ........+- .....++|+||.++|...
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 468886 8899999999988763 68999999654433222222111 1122222111 246678999999998543
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
....+....+..|....+.+.+.+++++. .+|.+|.
T Consensus 79 --~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 79 --KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 22345567778999999999999998765 5666664
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00048 Score=56.13 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=49.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC---CCchhhhhhcCC-CceEEEeccCCCc-----ccCCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGH-PRFELIRHDVTEP-----LLIEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---~~~~~~~~~~~~-~~~~~~~~d~~~~-----~~~~~D~v 101 (228)
.+++++|+|| |.+|++++..|...|..+|+++.|+.. +..+....+... ..+.....|+.+. .....|+|
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 4689999998 899999999999999445999999541 222212222111 2233444555442 22367999
Q ss_pred EEccCCC
Q 027129 102 YHLACPA 108 (228)
Q Consensus 102 i~~a~~~ 108 (228)
||+.-.+
T Consensus 204 INaTp~G 210 (289)
T PRK12548 204 VNATLVG 210 (289)
T ss_pred EEeCCCC
Confidence 9987544
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0029 Score=51.91 Aligned_cols=101 Identities=15% Similarity=0.279 Sum_probs=65.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh----------------------hhhhcCCCceEEEeccCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT 91 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~d~~ 91 (228)
+|+|.|+ |.+|.++++.|...|..++++++...-..... ++++.....++....++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899996 99999999999999978888887633221111 112222234555555555
Q ss_pred Cc-----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 92 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 92 ~~-----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
+. .+.+.|+||.+.- |...-..+-+.|++.++.+|..++.+.+|
T Consensus 80 ~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~ip~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCCCEEEEecCccee
Confidence 42 2347999998652 22333456677888888888887776655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0015 Score=54.61 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCe---EEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-cccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~D~vi~~a~~ 107 (228)
|++|.|.||||++|+.+++.|+++.... +..+........ ...+.. . .....+..+ ..+.++|++|.+++.
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~--~~~f~g-~--~~~v~~~~~~~~~~~~Divf~a~~~ 75 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGA--APSFGG-K--EGTLQDAFDIDALKKLDIIITCQGG 75 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCc--ccccCC-C--cceEEecCChhHhcCCCEEEECCCH
Confidence 5799999999999999999777764344 666555221111 111111 1 112222232 334679999988852
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCe--EEEEccceecc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEVYG 152 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r--~i~~Ss~~~y~ 152 (228)
. ....+...+.+.|.+ +|=.||..-..
T Consensus 76 ~------------------~s~~~~~~~~~aG~~~~VID~Ss~fR~~ 104 (369)
T PRK06598 76 D------------------YTNEVYPKLRAAGWQGYWIDAASTLRMK 104 (369)
T ss_pred H------------------HHHHHHHHHHhCCCCeEEEECChHHhCC
Confidence 1 223555556667754 66677665443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00055 Score=55.30 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-CccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~D~vi~~a~~~~ 109 (228)
.+++++|.|| |+.+++++..|+..|..+|+++.|...+..+ +.+............+..+.... ..|++||+...+.
T Consensus 125 ~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~-La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 125 TGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEE-LADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4689999996 9999999999999997789999995443222 22222211111111122222222 6899999875543
Q ss_pred cccccC---------CchhhHHhhHHH-HHHHHHHHHHcCCe
Q 027129 110 PIFYKY---------NPVKTIKTNVIG-TLNMLGLAKRVGAR 141 (228)
Q Consensus 110 ~~~~~~---------~~~~~~~~n~~~-~~~l~~~~~~~~~r 141 (228)
...... ...-.+++++.. .-.+++.+++.|++
T Consensus 203 ~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 203 AGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred CCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 221100 111223444432 45678888888877
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=50.32 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=67.4
Q ss_pred chhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCC
Q 027129 24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHP 81 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~ 81 (228)
..++.+. ..+|+|.|+ |.+|.++++.|.+.|..++++++...-.... .+.++....
T Consensus 20 e~Q~kL~-~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v 97 (287)
T PRK08223 20 TEQQRLR-NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPEL 97 (287)
T ss_pred HHHHHHh-cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCC
Confidence 3444544 689999985 9999999999999997788888774332211 111222233
Q ss_pred ceEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 82 RFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 82 ~~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
+++.+...++.. .+.++|+||.+.- ++ +...-..+-++|++.++.+|+-+..+
T Consensus 98 ~V~~~~~~l~~~n~~~ll~~~DlVvD~~D---------~~------~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 98 EIRAFPEGIGKENADAFLDGVDVYVDGLD---------FF------EFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred EEEEEecccCccCHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 455555555432 2347999987551 10 11222456678888888788765443
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0033 Score=48.83 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---------------------hhhhhcCCCce
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---------------------NLRKWIGHPRF 83 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---------------------~~~~~~~~~~~ 83 (228)
.++.+. ..+|+|.|+ |.+|..+++.|.+.|..++++++...-.... .+..+.....+
T Consensus 22 ~q~~L~-~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v 99 (212)
T PRK08644 22 LLEKLK-KAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEI 99 (212)
T ss_pred HHHHHh-CCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEE
Confidence 344444 679999995 9999999999999997779888875211110 11111222344
Q ss_pred EEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CCeEEEEccceeccC
Q 027129 84 ELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD 153 (228)
Q Consensus 84 ~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~r~i~~Ss~~~y~~ 153 (228)
+.+...+++. .+.++|+||.+.- |...-..+.+.+.+. ++.+|+-+...-|+.
T Consensus 100 ~~~~~~i~~~~~~~~~~~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 100 EAHNEKIDEDNIEELFKDCDIVVEAFD-----------------NAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred EEEeeecCHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 4444444432 2347899998751 122223556777777 778888766655554
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0017 Score=53.42 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+|+|.|+| .|.+|..++..|++.| ++|++++|+.
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G-~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAG-HEVRLWDADP 35 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCC-CeeEEEeCCH
Confidence 57899999 6999999999999999 9999999953
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0065 Score=50.26 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=73.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-----CCceEEEe-ccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~D~vi~~a 105 (228)
.+||.|+|| |.+|..++..++..+-..|+++++++........++.. .....+.. .|. ..+.++|+||.++
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEECC
Confidence 479999995 99999999998888733799999865543211111111 11223332 332 3567999999999
Q ss_pred CCCCccccc---CCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|........ .+..+.+..|....+.+++.+.+... .+|.+|-
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 865422110 13455677899988999988888764 5666664
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0018 Score=49.91 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=52.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|+|| |-+|...++.|++.| .+|+++.+. ....+..+.....+.+.+..+....+.+.|+||-+.
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~g-a~V~VIs~~---~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYG-AHIVVISPE---LTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEcCC---CCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 45899999996 999999999999999 999998762 122233333334577777666666677899888765
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0041 Score=48.02 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=54.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|+|| |-+|..-++.|++.| .+|++++.... ..+..+....++.++..+.....+.+++.||-+.
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~g-a~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAG-AQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCC-CEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence 34789999996 999999999999999 89998876322 3334444445789988887766677888888654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00036 Score=54.75 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=42.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi~~a 105 (228)
-+++=-.++|+||++++++|.+.| ++|+++.+... .... ....+++...+-... .+.++|++||+|
T Consensus 16 VR~itN~SSGgIG~AIA~~la~~G-a~Vvlv~~~~~-----l~~~-~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnA 88 (227)
T TIGR02114 16 VRSITNHSTGHLGKIITETFLSAG-HEVTLVTTKRA-----LKPE-PHPNLSIREIETTKDLLITLKELVQEHDILIHSM 88 (227)
T ss_pred ceeecCCcccHHHHHHHHHHHHCC-CEEEEEcChhh-----cccc-cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 344444579999999999999999 99999876211 1000 001223222111111 123689999999
Q ss_pred CCCC
Q 027129 106 CPAS 109 (228)
Q Consensus 106 ~~~~ 109 (228)
|...
T Consensus 89 gv~d 92 (227)
T TIGR02114 89 AVSD 92 (227)
T ss_pred Eecc
Confidence 9754
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0028 Score=53.16 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=69.6
Q ss_pred chhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCC
Q 027129 24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHP 81 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~ 81 (228)
..++.+. ..+|+|.|+ |.+|.++++.|...|..++++++...-.... .++++.+..
T Consensus 21 ~~q~~L~-~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v 98 (355)
T PRK05597 21 QGQQSLF-DAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDV 98 (355)
T ss_pred HHHHHHh-CCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCc
Confidence 3444444 689999985 9999999999999997788888774322111 111222233
Q ss_pred ceEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 82 RFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 82 ~~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
.++.....++.. .+.++|+||.+.. |...-..+-++|.+.++.+|+-+..+.+|
T Consensus 99 ~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 99 KVTVSVRRLTWSNALDELRDADVILDGSD-----------------NFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred EEEEEEeecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 455554455432 2458999998872 11222345668888888888877655544
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0043 Score=48.88 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=67.2
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh-----------------------hhhhcCCCc
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-----------------------LRKWIGHPR 82 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-----------------------~~~~~~~~~ 82 (228)
++.+. ..+|+|.|+ |.+|.++++.|...|..++++++...-..... +....+...
T Consensus 22 q~~L~-~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~ 99 (231)
T PRK08328 22 QEKLK-KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIK 99 (231)
T ss_pred HHHHh-CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCE
Confidence 34444 579999985 99999999999999977898887633221110 011112233
Q ss_pred eEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 83 FELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 83 ~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
++.....++.. .+.+.|+||.+.. |...-..+-++|++.++.+|+-++.+.||.
T Consensus 100 v~~~~~~~~~~~~~~~l~~~D~Vid~~d-----------------~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 100 IETFVGRLSEENIDEVLKGVDVIVDCLD-----------------NFETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred EEEEeccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 44444433322 2347888888762 112223455678888888888887776663
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00047 Score=56.51 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=54.3
Q ss_pred EEEEecCcchhHHHHHHHHHh----cCCCeEEEEcCCCCCCchhhhhhcCC-----CceEEEeccCCCccc-----CCcc
Q 027129 34 RILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLL-----IEVD 99 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-----~~~D 99 (228)
.++|.||+||-|..+++.++. .+ ..+-+..|+..+..+.++....+ ...-++.+|.+|+.. .++.
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~ 85 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQAR 85 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhE
Confidence 589999999999999999999 56 78888888665555544433221 122267788877654 3799
Q ss_pred EEEEccCCC
Q 027129 100 QIYHLACPA 108 (228)
Q Consensus 100 ~vi~~a~~~ 108 (228)
+|+||+|+-
T Consensus 86 vivN~vGPy 94 (423)
T KOG2733|consen 86 VIVNCVGPY 94 (423)
T ss_pred EEEeccccc
Confidence 999999863
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00018 Score=60.81 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=65.0
Q ss_pred cCCCEEEEecC----------------cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC--
Q 027129 30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91 (228)
Q Consensus 30 ~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-- 91 (228)
..+++++|||| +|.+|.++++.|...| .+|+++.+...... ...+..++....
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G-a~V~~~~g~~~~~~--------~~~~~~~~v~~~~~ 253 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG-ADVTLITGPVSLLT--------PPGVKSIKVSTAEE 253 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC-CEEEEeCCCCccCC--------CCCcEEEEeccHHH
Confidence 34799999998 3679999999999999 99999887432210 111222211111
Q ss_pred --C----cccCCccEEEEccCCCCccccc------CCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 92 --E----PLLIEVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 92 --~----~~~~~~D~vi~~a~~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
+ ....+.|++|++||+....... ......+..++..+..+++.+++...+.+.++-
T Consensus 254 ~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~~~~~lvgF 321 (390)
T TIGR00521 254 MLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIKKHQVIVGF 321 (390)
T ss_pred HHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhCCCcEEEEE
Confidence 1 1123689999999986543221 111222346667777777777764333333443
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0049 Score=43.34 Aligned_cols=30 Identities=27% Similarity=0.643 Sum_probs=25.7
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~ 63 (228)
++.|+|++|.+|..+++.|......++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 578999999999999999998632788888
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0035 Score=52.12 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCe---EEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.++|.|.||||++|+.+++.|.++.... +..+......... . .+.. ..+.+...| ...+.+.|++|.+++..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-~-~~~~-~~l~v~~~~--~~~~~~~Divf~a~~~~ 79 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-V-QFKG-REIIIQEAK--INSFEGVDIAFFSAGGE 79 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-e-eeCC-cceEEEeCC--HHHhcCCCEEEECCChH
Confidence 4799999999999999999998543244 5555442221111 1 1111 123333333 23346799999877421
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
....+...+.+.|+.+|=.||..-+.
T Consensus 80 ------------------~s~~~~~~~~~~G~~VID~Ss~fR~~ 105 (347)
T PRK06728 80 ------------------VSRQFVNQAVSSGAIVIDNTSEYRMA 105 (347)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECchhhcCC
Confidence 12345555666777888888876553
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0035 Score=53.32 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh----------------------hhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~d 89 (228)
..+|+|+|+ |.+|..+++.|...|..++++++...-..... +.++....+++.....
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEecc
Confidence 579999985 99999999999999977888887633221111 1111122334445444
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~ 153 (228)
++.. .+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|.
T Consensus 121 i~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 121 LDPSNAVELFSQYDLILDGTD-----------------NFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred CChhHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 4432 2347899998762 122223466788888888888877766663
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0041 Score=51.05 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
+++|.|.||||++|..|++.|.+....++..+...... .. +.......++|+||-+....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~~--- 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPDD--- 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCHH---
Confidence 57999999999999999999988874455555442111 00 11122234689999776311
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
....+...+.+.|+++|=+|+..-..
T Consensus 62 ---------------~s~~~~~~~~~~g~~VIDlSadfRl~ 87 (313)
T PRK11863 62 ---------------AAREAVALIDNPATRVIDASTAHRTA 87 (313)
T ss_pred ---------------HHHHHHHHHHhCCCEEEECChhhhcC
Confidence 12344445556677889899876443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0073 Score=43.11 Aligned_cols=85 Identities=26% Similarity=0.303 Sum_probs=61.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC---CccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~D~vi~~a~~~ 108 (228)
++++++.| +| -|.++++.|.+.| ++|++++.++. ...... ...++.+..|+.+.... ++|.|+..=
T Consensus 17 ~~kileIG-~G-fG~~vA~~L~~~G-~~ViaIDi~~~----aV~~a~-~~~~~~v~dDlf~p~~~~y~~a~liysir--- 85 (134)
T PRK04148 17 NKKIVELG-IG-FYFKVAKKLKESG-FDVIVIDINEK----AVEKAK-KLGLNAFVDDLFNPNLEIYKNAKLIYSIR--- 85 (134)
T ss_pred CCEEEEEE-ec-CCHHHHHHHHHCC-CEEEEEECCHH----HHHHHH-HhCCeEEECcCCCCCHHHHhcCCEEEEeC---
Confidence 57899999 46 8999999999999 99999999433 222222 23578999999987654 788877542
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCe
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r 141 (228)
.+.+.. .-+++.+++.++.
T Consensus 86 -------pp~el~-------~~~~~la~~~~~~ 104 (134)
T PRK04148 86 -------PPRDLQ-------PFILELAKKINVP 104 (134)
T ss_pred -------CCHHHH-------HHHHHHHHHcCCC
Confidence 222322 3778888888884
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=53.61 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=48.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
..+++++|+|+ |.+|++++..|...|..+|+++.|+..+..+..........+.+ ..+. .....+.|+||++...+.
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL-QEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc-hhccccCCEEEECCcCCC
Confidence 34789999996 99999999999998867899999953322221111111111222 1111 123357999999976543
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0035 Score=53.86 Aligned_cols=112 Identities=11% Similarity=0.024 Sum_probs=72.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc---CC---CeEEEEcCCCCC--CchhhhhhcCC-----CceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN---EK---NEVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~---g~---~~V~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 98 (228)
..+|+||||+|+||.+|+-.+..- |. -.+++++..... ......++.+. ..+.+.. -...++.++
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~~ea~~da 200 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DLDVAFKDA 200 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CCHHHhCCC
Confidence 468999999999999999988763 21 346666663111 11111111110 1233332 224567799
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEcc
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST 147 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss 147 (228)
|+||-++|.. .....+....++.|....+.+.+.+.++.. +++.+.|
T Consensus 201 DvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 201 HVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred CEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 9999999853 333445667889999999999999988764 6666665
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=53.22 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=48.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..+++++|+|+ |.+|++++..|...| .+|++++|...+..+..........+.... ..+....++|+||++...+
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g-~~v~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKAD-CNVIIANRTVSKAEELAERFQRYGEIQAFS--MDELPLHRVDLIINATSAG 189 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhhcCceEEec--hhhhcccCccEEEECCCCC
Confidence 34789999997 899999999999999 899999885332222222211111222222 2222334799999998654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00097 Score=51.03 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL 74 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~ 74 (228)
||++.|.| +|-||..++++|.+.| |+|.+-.|+.++..+..
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag-~eV~igs~r~~~~~~a~ 41 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAG-HEVIIGSSRGPKALAAA 41 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCC-CeEEEecCCChhHHHHH
Confidence 57787765 7999999999999999 99999877555544333
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0061 Score=49.89 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=72.3
Q ss_pred EecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC-----CceEEEeccCCCcccCCccEEEEccCCCCc
Q 027129 37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQIYHLACPASP 110 (228)
Q Consensus 37 ItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~ 110 (228)
|+|+ |.+|..++..|+..+- .+++++++..........++.+. ....+...| ...+.++|+||-+||....
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCCC
Confidence 4675 9999999999988763 57999998654433333332221 123333211 3466789999999986432
Q ss_pred ccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
...+....++.|....+.+.+.+.+++. .+|.+|.
T Consensus 78 --~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 78 --PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 2345567789999999999999998875 6777774
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=52.07 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=103.0
Q ss_pred CCEEEEecC-cchhHHHHHHHHHhcCCCeEEEEcCCCCC-CchhhhhhcCC-----CceEEEeccCCCcc----------
Q 027129 32 NMRILVTGG-AGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGH-----PRFELIRHDVTEPL---------- 94 (228)
Q Consensus 32 ~~~vlItGa-tG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~~-----~~~~~~~~d~~~~~---------- 94 (228)
.+-++|||| -|-||.++++.|+..| .+|++...+..+ ..+..+.+... ..+-++..++....
T Consensus 396 d~valVTGA~~gSIaa~Vv~~LL~gG-AtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg 474 (866)
T COG4982 396 DKVALVTGASKGSIAAAVVARLLAGG-ATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG 474 (866)
T ss_pred cceEEEecCCCcchHHHHHHHHHhCC-cEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence 578999995 5899999999999999 777777553332 23333333211 12223333333221
Q ss_pred ----------------cCCccEEEEccCCCCcc-cccCC--chhhHHhhHHHHHHHHHHHHHcC----C----eEEEEcc
Q 027129 95 ----------------LIEVDQIYHLACPASPI-FYKYN--PVKTIKTNVIGTLNMLGLAKRVG----A----RILLTST 147 (228)
Q Consensus 95 ----------------~~~~D~vi~~a~~~~~~-~~~~~--~~~~~~~n~~~~~~l~~~~~~~~----~----r~i~~Ss 147 (228)
...+|.+|-+|++...- ....+ .+..+++-+....+++-.+++.+ + ++|...|
T Consensus 475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS 554 (866)
T COG4982 475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS 554 (866)
T ss_pred cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence 12489999999864321 11112 23445666777777777776644 2 4676666
Q ss_pred c--eeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh----CCcEEEeeeccccCCCCCCCC
Q 027129 148 S--EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPRMNIDD 215 (228)
Q Consensus 148 ~--~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~----~i~~~ilRp~~i~G~~~~~~~ 215 (228)
- +.||. ...|+.+|...|..+..+..+. .+.++..++|.+=|.+...-|
T Consensus 555 PNrG~FGg-------------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~N 609 (866)
T COG4982 555 PNRGMFGG-------------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGHN 609 (866)
T ss_pred CCCCccCC-------------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCCc
Confidence 5 22332 2569999999999998887653 356677788888888766543
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=49.66 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=38.1
Q ss_pred cCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEEEccCCCCc
Q 027129 39 GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYHLACPASP 110 (228)
Q Consensus 39 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi~~a~~~~~ 110 (228)
-+||-.|.++++.+...| ++|+++.....-. ....++.++..-.++ ...+.|++|++|++...
T Consensus 26 ~SSG~~G~~lA~~~~~~G-a~V~li~g~~~~~--------~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsDf 95 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRG-AEVTLIHGPSSLP--------PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSDF 95 (185)
T ss_dssp S--SHHHHHHHHHHHHTT--EEEEEE-TTS------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--SE
T ss_pred CCcCHHHHHHHHHHHHCC-CEEEEEecCcccc--------ccccceEEEecchhhhhhhhccccCcceeEEEecchhhe
Confidence 347999999999999999 9999998842101 123566666544432 23468999999997653
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0067 Score=47.77 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=63.5
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh----------------------hhhhcCCCceEEEeccCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT 91 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~d~~ 91 (228)
+|+|.|+ |.+|.++++.|...|..++++++...-..... +.++.....+.....++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 5899985 99999999999999877888887632221111 111122234555555553
Q ss_pred C------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 92 E------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 92 ~------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
+ ....++|+||.+.. |...-..+-+.|.+.++.+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 2 12357999998652 23333456677778777788777765554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.021 Score=45.99 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
||+|.|+|. |.+|+.+++.|.+....++.++.... ...+........ .+. ...|+.+. ..++|+|+.|++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~-~~~~~~~~~~~~-~~~-~~~d~~~l-~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPE-HSIDAVRRALGE-AVR-VVSSVDAL-PQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcC-CCHHHHhhhhcc-CCe-eeCCHHHh-ccCCCEEEECCC
Confidence 579999996 99999999999876436666665322 222222221111 112 12233222 356999999985
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0064 Score=49.83 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=68.0
Q ss_pred EEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcC-----CCceEEEe-ccCCCcccCCccEEEEccCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~D~vi~~a~~ 107 (228)
|.|+|+ |.+|..++..|...+ . +|++++++.........++.. .....+.. .| ...+.++|+||.+++.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~-l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKE-LGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCC-CcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCC
Confidence 468997 999999999998887 5 999999964432211111111 01122221 23 2356789999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.. .......+.+..|....+.+++.+.+... .+|.+|-
T Consensus 77 p~--~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 77 PR--KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 32 22233345667789999999998888764 4555553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0055 Score=53.56 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.+++|+|+|+ |.+|.++++.|.+.| ++|+++++.+..........+....+++..++... ...++|.||...|+.
T Consensus 15 ~~~~v~viG~-G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGL-GVSGFAAADALLELG-ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 3689999996 889999999999999 99999987433222222222223356665544322 345789999887754
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0054 Score=51.73 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=64.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
..+|+|+|+ |.+|..+++.|...|..++++++...-.... .+.++.....++.+...
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 579999985 9999999999999997799998774221111 11112222344455444
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.. .+.++|+||.|.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 120 i~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 120 LTAENAVELLNGVDLVLDGSD-----------------SFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred cCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 4432 3457999998872 22223355577888887777776554443
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=46.63 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|.++++.|.+.|..++++++...-.... .+..+.....+..++.-
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 579999985 9999999999999987788888763221111 01111112234433322
Q ss_pred CCCc----cc-CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 90 VTEP----LL-IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 90 ~~~~----~~-~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
++.. .+ .++|+||.+.. +...-..+.++|++.++.+|..++++..
T Consensus 109 i~~e~~~~ll~~~~D~VIdaiD-----------------~~~~k~~L~~~c~~~~ip~I~~gGag~k 158 (268)
T PRK15116 109 ITPDNVAEYMSAGFSYVIDAID-----------------SVRPKAALIAYCRRNKIPLVTTGGAGGQ 158 (268)
T ss_pred cChhhHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 2211 12 36899998763 1223346788899888888877666543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0059 Score=51.67 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=63.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC------------------ch----hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------KD----NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------~~----~~~~~~~~~~~~~~~~d 89 (228)
.++|+|.|+ |.+|.++++.|.+.|..+++++++..-.. .+ .+.++.....++.....
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 579999985 89999999999999977899998852110 00 11111122234444433
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.. .+.+.|+||++.. |...-..+-++|++.++.+|+.+..+.+|
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~g~~g 263 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDGAD-----------------NFPTRYLLNDACVKLGKPLVYGAVFRFEG 263 (376)
T ss_pred CChHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 3321 2347999998873 11122346678888888888887655443
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0043 Score=45.81 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|.|| |-+|...++.|++.| ++|++++. . ..+.+.. ...+.+....+......+.|+||-+.
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~g-a~V~VIsp--~-~~~~l~~---l~~i~~~~~~~~~~dl~~a~lViaaT 78 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTG-AFVTVVSP--E-ICKEMKE---LPYITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEcC--c-cCHHHHh---ccCcEEEecccChhcCCCceEEEECC
Confidence 45899999996 999999999999999 99998853 1 1222222 23455666666666667888888654
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0082 Score=51.06 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=68.4
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCc
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPR 82 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~ 82 (228)
.++.+. ..+|+|.|+ |.+|..+++.|...|..++++++...-.... .++++....+
T Consensus 32 ~q~~L~-~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~ 109 (390)
T PRK07411 32 GQKRLK-AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQ 109 (390)
T ss_pred HHHHHh-cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCe
Confidence 344444 679999985 9999999999999997788888763322111 1112222234
Q ss_pred eEEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 83 FELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 83 ~~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.+...++.. .+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.||
T Consensus 110 v~~~~~~~~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 110 VDLYETRLSSENALDILAPYDVVVDGTD-----------------NFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred EEEEecccCHHhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 55555555442 2357999998863 12222345577788887778766655554
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.01 Score=46.95 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=27.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEE-EcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r 65 (228)
||+|.|.|++|-+|+.+++.+.+....++.+ ++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~ 36 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDR 36 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 7899999999999999999999886445444 444
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.012 Score=44.26 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=61.6
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---------------------hhhhhhcCCCceEEEeccCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------------------DNLRKWIGHPRFELIRHDVTE 92 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---------------------~~~~~~~~~~~~~~~~~d~~~ 92 (228)
+|+|.|+ |.+|..+++.|.+.|..++++++...-... ..+.++....+++.+...++.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 5899985 999999999999999667999987541110 011111222344444444433
Q ss_pred ----cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CCeEEEEccceeccC
Q 027129 93 ----PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD 153 (228)
Q Consensus 93 ----~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~r~i~~Ss~~~y~~ 153 (228)
..+.++|+||.+.. |...-..+.+.+.+. ++.+|+-+....|+.
T Consensus 80 ~~~~~~l~~~DlVi~~~d-----------------~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFD-----------------NAETKAMLAESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred hhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHHCCCCEEEEehhhccCC
Confidence 23457999998752 112223456666665 777887765555544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0013 Score=51.39 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=31.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
|+|.|+||+|.+|..++..|.+.| ++|.+.+|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHH
Confidence 689999999999999999999999 99999988433
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0051 Score=50.57 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCc----eEEEeccCCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR----FELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|+||.|.||+|+-|..|++.|......++.....+... .....+....-. ..+...|.......++|+||-+.-.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~-g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERA-GKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhc-CCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 68999999999999999999999875565555443221 112222211111 2222222222233468999987631
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
. ....++......++++|=+|+..-
T Consensus 81 g------------------~s~~~v~~l~~~g~~VIDLSadfR 105 (349)
T COG0002 81 G------------------VSAELVPELLEAGCKVIDLSADFR 105 (349)
T ss_pred h------------------hHHHHHHHHHhCCCeEEECCcccc
Confidence 1 112444445555678888888754
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0039 Score=58.83 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCe-------------EEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-------------VIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~-------------V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~-- 94 (228)
.+++|+|+|+ |++|+..++.|.+....+ |.+.++. .+..+.+.. ...++.++.|..|..
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----~~~a~~la~~~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----LKDAKETVEGIENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----HHHHHHHHHhcCCCceEEeecCCHHHH
Confidence 3789999996 999999999998764233 6666653 222222222 124566777766642
Q ss_pred ---cCCccEEEEccC
Q 027129 95 ---LIEVDQIYHLAC 106 (228)
Q Consensus 95 ---~~~~D~vi~~a~ 106 (228)
..++|+||++..
T Consensus 643 ~~~v~~~DaVIsalP 657 (1042)
T PLN02819 643 LKYVSQVDVVISLLP 657 (1042)
T ss_pred HHhhcCCCEEEECCC
Confidence 247999999884
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.054 Score=39.87 Aligned_cols=141 Identities=20% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc--CCCc------------ccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEP------------LLIE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--~~~~------------~~~~ 97 (228)
..+|+|.||-|-+|+++++.+.+++ +-|.-++-......+ .--++..+ .+++ .-.+
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~Ad---------~sI~V~~~~swtEQe~~v~~~vg~sL~gek 72 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQAD---------SSILVDGNKSWTEQEQSVLEQVGSSLQGEK 72 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeeccccccc---------ceEEecCCcchhHHHHHHHHHHHHhhcccc
Confidence 4689999999999999999999999 888777663221111 01112221 1111 1126
Q ss_pred ccEEEEccCCCCcc-ccc----CCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-~~~----~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
.|.||+.||-.... ... ++.+..++-.+....--...+-++ +. -++.+.....-- .+.
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl---------------~gT 137 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAAL---------------GGT 137 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccccc---------------CCC
Confidence 99999988643221 111 222222222222111111122221 11 355555442210 122
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH-hCCc
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ-HGIE 197 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~-~~i~ 197 (228)
...-.|+..|.+..++...++.+ .|++
T Consensus 138 PgMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 138 PGMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred CcccchhHHHHHHHHHHHHhcccccCCC
Confidence 23356999999999999998754 3554
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0075 Score=49.52 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=54.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-C-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-CcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-K-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~D~vi~~a~~~ 108 (228)
+++|.|.||||.+|+.+++.|.++. . ..+.++...+..... ...+.. ..+. +..+.. .....++|+++.++|..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~-~~~f~~-~~~~-v~~~~~~~~~~~~~Divf~~ag~~ 77 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK-YIEFGG-KSIG-VPEDAADEFVFSDVDIVFFAAGGS 77 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc-cccccC-cccc-CccccccccccccCCEEEEeCchH
Confidence 5799999999999999999999854 2 224444332121111 001110 1111 111111 22334799999998621
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
..+.+...+.+.|+-+|=-||..-+.
T Consensus 78 ------------------~s~~~~p~~~~~G~~VIdnsSa~Rm~ 103 (334)
T COG0136 78 ------------------VSKEVEPKAAEAGCVVIDNSSAFRMD 103 (334)
T ss_pred ------------------HHHHHHHHHHHcCCEEEeCCcccccC
Confidence 11455567777776555555555444
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=51.55 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=47.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.+++++|+|+ |..|++++..|...|..+|++++|...+.......+.. .....+...+.......++|+||++.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 4689999996 88999999999999855899999954333222222211 11223322221122345799999995
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0028 Score=54.83 Aligned_cols=67 Identities=22% Similarity=0.439 Sum_probs=50.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
|+|+|+|+ |.+|+.+++.|.+.| +.|+++++ ..+....+.....+.++.+|.++.. ..++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~----~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN-NDVTVIDT----DEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CcEEEEEC----CHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 68999997 999999999999999 99999988 3333433322245788888887642 34788888765
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.011 Score=51.47 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=53.0
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh-hhhhcCCCceEEEeccCCCcccCCccEEEE
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
+..++. +++|+|+|. |..|.++++.|.+.| +.|.+.++.+...... ... +...++.+..++.......++|.||.
T Consensus 8 ~~~~~~-~~~i~v~G~-G~sG~a~a~~L~~~G-~~V~~~D~~~~~~~~~~~~~-l~~~gi~~~~~~~~~~~~~~~dlVV~ 83 (458)
T PRK01710 8 FKKFIK-NKKVAVVGI-GVSNIPLIKFLVKLG-AKVTAFDKKSEEELGEVSNE-LKELGVKLVLGENYLDKLDGFDVIFK 83 (458)
T ss_pred Hhhhhc-CCeEEEEcc-cHHHHHHHHHHHHCC-CEEEEECCCCCccchHHHHH-HHhCCCEEEeCCCChHHhccCCEEEE
Confidence 344444 689999984 889999999999999 9999999854322111 112 22235666655443333457899999
Q ss_pred ccCCC
Q 027129 104 LACPA 108 (228)
Q Consensus 104 ~a~~~ 108 (228)
..|+.
T Consensus 84 Spgi~ 88 (458)
T PRK01710 84 TPSMR 88 (458)
T ss_pred CCCCC
Confidence 77653
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0048 Score=47.47 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=44.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
..+|+++|+|. |.+|+.+++.|.+.| ++|++.+++ .+.............+. ..+....++|+++.+|.
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G-~~Vvv~D~~----~~~~~~~~~~~g~~~v~--~~~l~~~~~Dv~vp~A~ 94 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEG-AKLIVADIN----EEAVARAAELFGATVVA--PEEIYSVDADVFAPCAL 94 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCC----HHHHHHHHHHcCCEEEc--chhhccccCCEEEeccc
Confidence 34799999996 799999999999999 999988873 22222221111222222 11222237899987764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0063 Score=52.21 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.+|+|.|+| .|++|..++..|.+.| ++|++++++..
T Consensus 2 ~~~kI~VIG-lG~~G~~~A~~La~~G-~~V~~~D~~~~ 37 (415)
T PRK11064 2 SFETISVIG-LGYIGLPTAAAFASRQ-KQVIGVDINQH 37 (415)
T ss_pred CccEEEEEC-cchhhHHHHHHHHhCC-CEEEEEeCCHH
Confidence 368999998 5999999999999999 99999998433
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0035 Score=45.89 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+++++|+|+ |.+|+.+++.|.+.+.++|++.+|+.....+....... ..+.....|.. ....++|+||.+...
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-LGIAIAYLDLE-ELLAEADLIINTTPV 91 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-cccceeecchh-hccccCCEEEeCcCC
Confidence 4689999997 99999999999988437899998843322222221111 00111111211 124589999999854
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0033 Score=51.07 Aligned_cols=77 Identities=10% Similarity=0.002 Sum_probs=46.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~~ 108 (228)
++++++|+|+ |..|++++..|...|..+|+++.|...+..+....+.....+..+.. +-......++|+||++....
T Consensus 124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 4689999985 99999999999999866899999943322222221111111111110 10112235789999987543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0025 Score=54.49 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.++++++|+|+ |.+|+.+++.|...|..+|++..|... ....+... ........+.....+.+.|+||++.+..
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~----ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE----KAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 34789999996 999999999999998668999999432 22222211 1122332222223345789999988754
Q ss_pred C
Q 027129 109 S 109 (228)
Q Consensus 109 ~ 109 (228)
.
T Consensus 254 ~ 254 (414)
T PRK13940 254 E 254 (414)
T ss_pred C
Confidence 4
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0033 Score=51.22 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=47.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEec---cCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRH---DVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~---d~~~~~~~~~D~vi~~a~~ 107 (228)
..++|.|||||.|.-++++|.++| ..-.+-.| +.+++..+... ..+..+.. +..+....+.++|+||+|+
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g-~~~aLAgR----s~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGP 81 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG-LTAALAGR----SSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGP 81 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC-CchhhccC----CHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccc
Confidence 468999999999999999999999 77777777 34443322211 12222222 2333344589999999986
Q ss_pred C
Q 027129 108 A 108 (228)
Q Consensus 108 ~ 108 (228)
-
T Consensus 82 y 82 (382)
T COG3268 82 Y 82 (382)
T ss_pred c
Confidence 3
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=46.20 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=27.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|++|.|+|++|.+|+.+++.+.+....+++++..
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4799999999999999999998764377777544
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0029 Score=53.58 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.+++++|+|| |=+|.-++++|...|...|++..| +.++...+...-+.++...+-......+.|+||.+.+...
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNR----T~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANR----TLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcC----CHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 5789999996 999999999999999889999999 4554444433334556665555556668999999876544
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.014 Score=55.24 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=70.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------hhhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d 89 (228)
..+|||.|. |.||..+++.|...|..+|++++...-... +.++++.+...++....+
T Consensus 24 ~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 102 (1008)
T TIGR01408 24 KSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVP 102 (1008)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEeccc
Confidence 478999995 789999999999999888988876322111 112233333456666666
Q ss_pred CCCcccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC--CeEEEEccceecc
Q 027129 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~r~i~~Ss~~~y~ 152 (228)
++...+.+.|+||.+-. +......+-++|++.+ +.||+.++.+.||
T Consensus 103 l~~e~l~~fdvVV~t~~-----------------~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 103 FNEEFLDKFQCVVLTEM-----------------SLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred CCHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 66555668999998531 2223346778999998 6789888877766
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.01 Score=49.68 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=55.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-CC--CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-ccCCccEEEEccCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-EK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACPA 108 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~D~vi~~a~~~ 108 (228)
|+|.|.||||.+|+.+++.|..+ .. .+++++...+...... ....... ...+..+. .+.+.|+++.++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~---~f~~~~~--~v~~~~~~~~~~~vDivffa~g~- 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP---SFGGTTG--TLQDAFDIDALKALDIIITCQGG- 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC---CCCCCcc--eEEcCcccccccCCCEEEEcCCH-
Confidence 57999999999999999999844 31 3445544422211110 1111122 23344443 56789999998862
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcccee
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEV 150 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~ 150 (228)
...+.+...+.+.|. .+|=-||..-
T Consensus 75 -----------------~~s~~~~p~~~~aG~~~~VIDnSSa~R 101 (366)
T TIGR01745 75 -----------------DYTNEIYPKLRESGWQGYWIDAASSLR 101 (366)
T ss_pred -----------------HHHHHHHHHHHhCCCCeEEEECChhhh
Confidence 123466667778884 4555555543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.018 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG 69 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~ 69 (228)
+++|.|+|+ |.+|..++..|+..| +.|+++++.+..
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAG-VDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCC-CEEEEEECCHHH
Confidence 568999996 999999999999999 999999995443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.047 Score=37.17 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=57.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.++++++|+|+ |-+|..=++.|++.| .+|+++.... ...+ ..+++...++. ....+.+.||-+.+
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~g-A~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at~--- 69 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAG-AKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAATD--- 69 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCT-BEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-SS---
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecCC---
Confidence 34799999996 999999999999999 9999998832 1112 35666666654 55668888885442
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccc
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~ 148 (228)
+-.....+.+.|++.+ .++++...
T Consensus 70 --------------d~~~n~~i~~~a~~~~-i~vn~~D~ 93 (103)
T PF13241_consen 70 --------------DPELNEAIYADARARG-ILVNVVDD 93 (103)
T ss_dssp ---------------HHHHHHHHHHHHHTT-SEEEETT-
T ss_pred --------------CHHHHHHHHHHHhhCC-EEEEECCC
Confidence 1122245666776654 45666554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0056 Score=49.62 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=31.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+++++|+|++|.+|++++..|++.| .+|++..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~g-atVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNAN-ATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 458999999999999999999999999 68888877
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=50.03 Aligned_cols=71 Identities=24% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++|+|.| .|..|.++++.|.+.| +.|.+.++..... .+.....++.+..+.-......++|.||...|+.
T Consensus 15 ~~~v~v~G-~G~sG~a~a~~L~~~G-~~V~~~D~~~~~~----~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAG-AGVSGRGIAAMLSELG-CDVVVADDNETAR----HKLIEVTGVADISTAEASDQLDSFSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCC-CEEEEECCChHHH----HHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence 68899999 5889999999999999 8999998743221 1111223555555432222334789999887754
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0019 Score=53.62 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=49.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~ 104 (228)
+.+.+|||+||+|.+|...++.+.+.| ..++++..+..+.. .+.++....-+++.+.|+.+... .+.|+|+..
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 447899999999999999999999998 57767666332222 33333333344444545443321 269999998
Q ss_pred cC
Q 027129 105 AC 106 (228)
Q Consensus 105 a~ 106 (228)
.|
T Consensus 219 vG 220 (326)
T COG0604 219 VG 220 (326)
T ss_pred CC
Confidence 86
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=49.30 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------~~~~D~vi~ 103 (228)
.+++++|+|+ |.+|+.+++.|.+.| +.|++++++ .+....+.. ...+.++.+|.++.. ..++|.||-
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~----~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERD----PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECC----HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 3689999996 999999999999999 999999883 333332222 135678899988753 237888886
Q ss_pred cc
Q 027129 104 LA 105 (228)
Q Consensus 104 ~a 105 (228)
+.
T Consensus 304 ~~ 305 (453)
T PRK09496 304 LT 305 (453)
T ss_pred CC
Confidence 55
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0029 Score=46.95 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=42.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
||+|.++| .|-+|+.+++.|++.| ++|++.+| ..+..+.+... .... .+-..+...++|+|+-+.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g-~~v~~~d~----~~~~~~~~~~~-g~~~--~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAG-YEVTVYDR----SPEKAEALAEA-GAEV--ADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTT-TEEEEEES----SHHHHHHHHHT-TEEE--ESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcC-CeEEeecc----chhhhhhhHHh-hhhh--hhhhhhHhhcccceEeec
Confidence 78999998 5999999999999999 99999998 44444444332 2222 222222333578888765
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.096 Score=45.38 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCEEE----EecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc-C
Q 027129 32 NMRIL----VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA-C 106 (228)
Q Consensus 32 ~~~vl----ItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a-~ 106 (228)
+..++ |+||+|.+|.++++.|...| .+|++..+...+. +. ....+++.+++-+ +
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g-~~v~~~~~~~~~~------------------~~--~~~~~~~~~~~d~~~ 92 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLG-YDVVANNDGGLTW------------------AA--GWGDRFGALVFDATG 92 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCC-CeeeecCcccccc------------------cc--CcCCcccEEEEECCC
Confidence 44555 78889999999999999999 9999876522100 00 0011344333222 1
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
. ...+.. ..-.......++.+.. +.+||++++..... ....|+.+|...+.+
T Consensus 93 ~-------~~~~~l-~~~~~~~~~~l~~l~~-~griv~i~s~~~~~-------------------~~~~~~~akaal~gl 144 (450)
T PRK08261 93 I-------TDPADL-KALYEFFHPVLRSLAP-CGRVVVLGRPPEAA-------------------ADPAAAAAQRALEGF 144 (450)
T ss_pred C-------CCHHHH-HHHHHHHHHHHHhccC-CCEEEEEccccccC-------------------CchHHHHHHHHHHHH
Confidence 1 111111 1111222233333322 23899999874421 112489999999999
Q ss_pred HHHHHHHh--CCcEEEeeecc
Q 027129 187 MFDYHRQH--GIEIRIARIFN 205 (228)
Q Consensus 187 ~~~~~~~~--~i~~~ilRp~~ 205 (228)
.+.++.++ ++.+..+.|+.
T Consensus 145 ~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 145 TRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHhhcCCEEEEEecCC
Confidence 99988875 67777777653
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.04 Score=47.33 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-----CeEEEEcCCCCCCchh----------------------hhhhcCCCceEEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-----NEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELI 86 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-----~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~ 86 (228)
+|+|.|+ |.||.++++.|...|. .++++++...-..... +.++.....++..
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 5899985 9999999999999985 5888887633321111 1111222344555
Q ss_pred eccCCC--------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 87 RHDVTE--------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 87 ~~d~~~--------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
...+.. ..+.+.|+||.+.- |+..-..+-+.|...++.+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~iPli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALD-----------------NVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence 443321 12346888887651 33344566778888887788877766655
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=46.88 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=52.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCccc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 112 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~~ 112 (228)
-+|.|.||+||.|..|++.|......++..+..... ++ ..| .+....++|++|.+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------------~~--~~~-~~~~~~~~D~vFlalp~~---- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------------KD--AAE-RAKLLNAADVAILCLPDD---- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------------cC--cCC-HhHhhcCCCEEEECCCHH----
Confidence 379999999999999999999987456655543111 00 001 111224689998776311
Q ss_pred ccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
....++..+.+.++++|=+|+..-.
T Consensus 61 --------------~s~~~~~~~~~~g~~VIDlSadfRl 85 (310)
T TIGR01851 61 --------------AAREAVSLVDNPNTCIIDASTAYRT 85 (310)
T ss_pred --------------HHHHHHHHHHhCCCEEEECChHHhC
Confidence 1124444555667788888887543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.032 Score=45.75 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=61.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
-++|.| ||||-+|+.+++.|-+++. .+++++........ +. ....+-++...+++...+.++|+++. +|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~g-k~---i~f~g~~~~V~~l~~~~f~~vDia~f-ag~-- 74 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEE-QG---IRFNNKAVEQIAPEEVEWADFNYVFF-AGK-- 74 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCC-CE---EEECCEEEEEEECCccCcccCCEEEE-cCH--
Confidence 368999 9999999999998888761 35555544211111 11 11112344444566667789999998 651
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
...+.....+.+.|+.+|=-||..-..
T Consensus 75 ----------------~~s~~~ap~a~~aG~~VIDnSsa~Rmd 101 (322)
T PRK06901 75 ----------------MAQAEHLAQAAEAGCIVIDLYGICAAL 101 (322)
T ss_pred ----------------HHHHHHHHHHHHCCCEEEECChHhhCC
Confidence 122455556777888888888876544
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.066 Score=41.79 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=54.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|+|| |-++..=++.|++.| .+|+++... -...+..+.....+.+.+.+....+..+++.||-+.
T Consensus 23 ~~~~~VLVVGG-G~VA~RK~~~Ll~~g-A~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 23 SNKIKVLIIGG-GKAAFIKGKTFLKKG-CYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECC
Confidence 34789999996 999999899999999 889888763 223344444556789998887777777888888654
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0079 Score=56.67 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=98.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hhhhhcCC-CceEEEeccCCCcc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGH-PRFELIRHDVTEPL----------- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~~~-~~~~~~~~d~~~~~----------- 94 (228)
..-|.++|+||-|..|..|+..|..+|...+++..|+.-++.- ..+.+... -.+.+-.-|++...
T Consensus 1766 hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~k 1845 (2376)
T KOG1202|consen 1766 HPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNK 1845 (2376)
T ss_pred CccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhh
Confidence 3458999999999999999999999997788888885444321 12223221 12333334444321
Q ss_pred cCCccEEEEccCCCCcccccCC----chhhHHhhHHHHHHHHHHHHHc-CC--eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 95 LIEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLAKRV-GA--RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 95 ~~~~D~vi~~a~~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~-~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
...+-.|+|+|........++. +...-+.-+.++.++-+..++. .. -||.+||.+.-.+
T Consensus 1846 l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRG-------------- 1911 (2376)
T KOG1202|consen 1846 LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRG-------------- 1911 (2376)
T ss_pred cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCC--------------
Confidence 1246678888876544333332 2233344556667776666553 22 4899998864322
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeecc
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~ 205 (228)
-...+.|+.+...+|+.+++-.++ |++=+.+.=|.
T Consensus 1912 --N~GQtNYG~aNS~MERiceqRr~~-GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1912 --NAGQTNYGLANSAMERICEQRRHE-GFPGTAIQWGA 1946 (2376)
T ss_pred --CCcccccchhhHHHHHHHHHhhhc-CCCcceeeeec
Confidence 123366999999999998876544 77766665543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.031 Score=46.70 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|++|.|.|. |.+|+.+++.+......+++++..
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEEC
Confidence 579999998 999999999988765478888765
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0057 Score=50.39 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+++|+|+|+ |-+|+.+++.|...|.+.|++++|...+..+..... .......+-......++|+||.+.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----g~~~~~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----GGNAVPLDELLELLNEADVVISATGA 248 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----CCeEEeHHHHHHHHhcCCEEEECCCC
Confidence 4799999996 999999999998866478999988432222222221 12333222112223478999998863
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.035 Score=45.61 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+++|+||+|.+|..+++.+...| .+|+++.+.
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g-~~v~~~~~~ 196 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALG-ARVIAVTRS 196 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEeCC
Confidence 346799999999999999999999999 899888873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0068 Score=52.33 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=30.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|.|+||+|.+|..+++.|.+.| ++|++++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~ 33 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVTGRD 33 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 689999999999999999999999 999999984
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.053 Score=43.32 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=41.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
++|.|+| .|.||+.++++|.+... .++..+.+... +..+.+... .. ...|+.+....++|+|+-||++
T Consensus 3 ~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~---~~~~~~~~~--~~-~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAA---DLPPALAGR--VA-LLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCH---HHHHHhhcc--Cc-ccCCHHHHhhcCCCEEEECCCH
Confidence 6899998 79999999999976532 56666655322 222222221 11 1223333334689999999963
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0049 Score=51.52 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc----cCCccEEEEc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHL 104 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~D~vi~~ 104 (228)
..+++.|||.||+|.+|.++++-+...+ ...++..++ ....+..+.+....-+++...|.-+.. ..++|+|+.|
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s-~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACS-KEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC 232 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcc-cchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence 3457899999999999999999888888 555555552 223333343332223444433332221 3369999999
Q ss_pred cCC
Q 027129 105 ACP 107 (228)
Q Consensus 105 a~~ 107 (228)
+|.
T Consensus 233 vg~ 235 (347)
T KOG1198|consen 233 VGG 235 (347)
T ss_pred CCC
Confidence 974
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.052 Score=46.65 Aligned_cols=103 Identities=9% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------hhhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|..+++.|...|..++++++...-... +.+.++.+...++++..+
T Consensus 20 ~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~ 98 (425)
T cd01493 20 SAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES 98 (425)
T ss_pred hCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 578999986 569999999999999778888876322111 012222233344555544
Q ss_pred CCC------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
..+ ..+.+.|+||.+-. +......+.+.|++.++.+|+.+|.+.||
T Consensus 99 ~~~ll~~~~~f~~~fdiVI~t~~-----------------~~~~~~~L~~~c~~~~iPlI~~~s~G~~G 150 (425)
T cd01493 99 PEALLDNDPSFFSQFTVVIATNL-----------------PESTLLRLADVLWSANIPLLYVRSYGLYG 150 (425)
T ss_pred cchhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEecccCEE
Confidence 321 12346788875321 12223456788888888999999998887
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.12 Score=39.82 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=32.0
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
++.+. .++|+|.|+ |.+|+.+++.|.+.|..+++++++.
T Consensus 16 q~~L~-~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 16 VQKLE-QATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHh-CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 33444 589999996 8899999999999994479999885
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.051 Score=42.57 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+|+|+|. |.+|++.+++|.+.|--++.+++-
T Consensus 30 ~~~V~VvGi-GGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 30 QAHVCVVGI-GGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred hCcEEEEec-CchhHHHHHHHHHcCCCeEEEEec
Confidence 368999995 999999999999998667777765
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=44.61 Aligned_cols=118 Identities=19% Similarity=0.065 Sum_probs=68.8
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCC-chhhhhhcCCCceE-EEeccCCCcccCCccEEEEc
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS-KDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~-~~~~~~~~~~~~~~-~~~~d~~~~~~~~~D~vi~~ 104 (228)
-...+-||.|.||.|.||+.|...|..+. ..++.+.+....+. ...+--+.....+. +...|-......+.|+|+--
T Consensus 24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 34457899999999999999998776553 13444444421111 11111111111111 11122222345689999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
||... .-....+..+.+|.-..+.+..++.++-. ++.++|-
T Consensus 104 AGVPR--KPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 104 AGVPR--KPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CCCCC--CCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 98543 33344457789999999999998877543 5666664
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0096 Score=48.46 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=45.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
..+++++|+|. |.+|+.+++.|...| .+|++.+|+.. ....... .....+..+-......+.|+||++.
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G-~~V~v~~R~~~----~~~~~~~-~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALG-ARVFVGARSSA----DLARITE-MGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCC-CEEEEEeCCHH----HHHHHHH-CCCeeecHHHHHHHhccCCEEEECC
Confidence 34789999996 889999999999999 89999998432 2211111 1222222111122345899999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.056 Score=46.55 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
+|+|+|.| -|--|.++++.|.+.| +.|++.+.++.. ............+++..+...+.....+|+||-.-|+..
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence 89999998 5899999999999999 999999975444 211111222346777777666666668999998777543
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.052 Score=49.41 Aligned_cols=106 Identities=8% Similarity=0.052 Sum_probs=64.7
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~ 83 (228)
++.+. ..+|+|.| .|.+|..+++.|...|..++++++...-...+ .+.++.....+
T Consensus 38 Q~kL~-~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I 115 (679)
T PRK14851 38 QERLA-EAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEI 115 (679)
T ss_pred HHHHh-cCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeE
Confidence 34444 68999998 59999999999999987678777652221110 11112223355
Q ss_pred EEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccc
Q 027129 84 ELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148 (228)
Q Consensus 84 ~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~ 148 (228)
+.+...++.. .+.++|+||.+.- ++ ....-..+.+.|++.++.+|+.+..
T Consensus 116 ~~~~~~i~~~n~~~~l~~~DvVid~~D---------~~------~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 116 TPFPAGINADNMDAFLDGVDVVLDGLD---------FF------QFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred EEEecCCChHHHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHCCCCEEEeecc
Confidence 6666555543 2347999997661 10 0111235667788888877776543
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0088 Score=51.36 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=46.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..+++++|+|+ |-+|..+++.|...|..+|++++|...+..+.... . ....+..+-......+.|+||.+.+..
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~-~---g~~~i~~~~l~~~l~~aDvVi~aT~s~ 251 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE-L---GGEAVKFEDLEEYLAEADIVISSTGAP 251 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-c---CCeEeeHHHHHHHHhhCCEEEECCCCC
Confidence 34789999996 99999999999998867899998843222111111 1 112222221112334799999987643
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.063 Score=46.52 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++++|+|+ |..|.++++.|.+.| +.|.+.+...... ....+.. ..++.+..+...+....++|.||...|+.
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g-~~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNG-AEVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCCCch--hHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 689999997 689999999999999 9999998743321 1112211 12456655554433345799999988754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=40.04 Aligned_cols=64 Identities=25% Similarity=0.450 Sum_probs=47.1
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
|+|.|. |-+|+.+++.|.+.+ ..|+++++ ..+....+.. ..+.++.+|.++... .+++.++-+.
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~----d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDR----DPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEES----SHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEEC----CcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEcc
Confidence 578885 899999999999976 79999998 4444443333 348899999998743 4788888766
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0099 Score=51.14 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=46.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..+++++|+|+ |-+|+.+++.|...|..+|++.+|...+..+.... . ..+....+-......++|+||.+.+..
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~-~---g~~~~~~~~~~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE-F---GGEAIPLDELPEALAEADIVISSTGAP 253 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-c---CCcEeeHHHHHHHhccCCEEEECCCCC
Confidence 44789999986 99999999999988844898988843222111111 1 112222211122334789999987643
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.043 Score=47.03 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=30.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
|+|.|+| .|++|..++..|.+.| ++|++++++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G-~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLG-HEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcC-CeEEEEECCHH
Confidence 5799998 5999999999999999 99999998433
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.056 Score=50.68 Aligned_cols=105 Identities=11% Similarity=0.027 Sum_probs=65.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.| .|++|..+++.|...|.-++++++...-...+ .+.++.....++.+...
T Consensus 332 ~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 57999998 59999999999999987788887653322111 11122223345555544
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++.. .+.++|+||.+.-. . ....-..+.+.|.+.++.+|+.++.+.+|
T Consensus 411 I~~en~~~fl~~~DiVVDa~D~---------~------~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 411 VAAETIDAFLKDVDLLVDGIDF---------F------ALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred CCHHHHHHHhhCCCEEEECCCC---------c------cHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 4332 23489999986521 0 11122456667888888888877755443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=47.21 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=42.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|+|.|+| .|.+|..++..|.+.| ++|++.+++ .+..........++....+. ....++|+||-+.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g-~~V~~~d~~----~~~~~~a~~~g~~~~~~~~~--~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLG-HTVYGVSRR----ESTCERAIERGLVDEASTDL--SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHHCCCcccccCCH--hHhcCCCEEEEcC
Confidence 5799998 6999999999999999 999999983 22222222211122111111 1245789988876
|
|
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=47.41 Aligned_cols=100 Identities=12% Similarity=-0.002 Sum_probs=63.2
Q ss_pred CCccEEEEccCCCCccccc--CCc-hhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK--YNP-VKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~--~~~-~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
.+++.+|.+-|.+...... ... ...++.|+..++.+..--.+.+. ++|.++|... ....
T Consensus 202 ~~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~-----------------~~~s 264 (410)
T PF08732_consen 202 DDIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNN-----------------NAIS 264 (410)
T ss_pred hhhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCc-----------------chhh
Confidence 3677889888866533221 111 22345555555553322224444 8888988642 2333
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
....|...|...|+-+.......--.++|+|||-+.|...+
T Consensus 265 ~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 265 SMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 44679999999999998875532246899999999997666
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0089 Score=52.58 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=48.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.+++|+|+|+ |-+|+.+++.|...|..+|+++.|+..+... +........+.+...+-......++|+||.+.+...
T Consensus 265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~-La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 265 ASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAA-LREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 3789999997 9999999999999984579999884332222 211111112222222222233458999998876443
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.018 Score=50.98 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+++++|+|+ |.+|++++..|.+.| .+|+++.|.
T Consensus 378 ~~k~vlIlGa-GGagrAia~~L~~~G-~~V~i~nR~ 411 (529)
T PLN02520 378 AGKLFVVIGA-GGAGKALAYGAKEKG-ARVVIANRT 411 (529)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 4689999998 899999999999999 799999884
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.066 Score=44.10 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=31.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+|+|+||+|.+|..+++.+...| .+|+++.++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s 172 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGS 172 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999888889 789888773
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0092 Score=48.45 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCce-EEEeccCC--CcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVT--EPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d~~--~~~~~~~D~vi~~a~~ 107 (228)
++++++|.|| |+.|++++-.|...|..+|+++.|...+..+....+...... .....+.. .....++|+|||+.-.
T Consensus 126 ~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred CCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 3689999996 999999999999998678999999433322222211111110 01112211 1123468999998744
Q ss_pred C
Q 027129 108 A 108 (228)
Q Consensus 108 ~ 108 (228)
+
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 3
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.076 Score=45.18 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=26.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
|+|.|+| .|++|..++..| +.| |+|++++++.
T Consensus 1 mkI~VIG-lGyvGl~~A~~l-A~G-~~VigvD~d~ 32 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLI-AQN-HEVVALDILP 32 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHH-HhC-CcEEEEECCH
Confidence 5799997 699999999655 468 9999999943
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.02 Score=47.58 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=32.1
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
...+.+++|+||+|.+|..+++.+...| .+|+++.++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~ 185 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGS 185 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 3457899999999999999999888899 788888773
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.014 Score=47.76 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.+++++|+|. |.+|+.++..|.+.| .+|++.+|+... .+.... ...+.+..+.......+.|+||++.
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~G-a~V~v~~r~~~~-~~~~~~----~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALG-ANVTVGARKSAH-LARITE----MGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHHHH----cCCeeecHHHHHHHhCCCCEEEECC
Confidence 4789999996 889999999999999 899999994221 111111 1233332221123345799999976
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.074 Score=43.28 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=27.3
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+|+|.|+ |.+|.++++.|...|..++++++.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDM 31 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECC
Confidence 5899985 999999999999999778888865
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.06 Score=47.26 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=48.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.+++|+|+| .|-.|.+.++.|...| .+|++.++... ....+.. ..+.+..++.......++|+||...|+.
T Consensus 11 ~~~~v~V~G-~G~sG~aa~~~L~~~G-~~v~~~D~~~~----~~~~l~~-~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAG-AGVTGRAVLAALTRFG-ARPTVCDDDPD----ALRPHAE-RGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCC-CEEEEEcCCHH----HHHHHHh-CCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 478999999 4899999999999999 99999886322 2222111 2455554433223345689999988754
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.067 Score=48.95 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=65.0
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCch---------------------hhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKD---------------------NLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~---------------------~~~~~~~~~~~ 83 (228)
++.+. ..+|+|.|. | +|++++..|.+.|. -++++++...-...+ .+.++....++
T Consensus 102 Q~~L~-~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v 178 (722)
T PRK07877 102 QERLG-RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPV 178 (722)
T ss_pred HHHHh-cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEE
Confidence 34444 689999998 7 99999999999983 588888663222111 11122223355
Q ss_pred EEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccc
Q 027129 84 ELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148 (228)
Q Consensus 84 ~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~ 148 (228)
+.+...++.. .+.++|+||.|.- |...=..+.++|.+.++.+|+-++.
T Consensus 179 ~~~~~~i~~~n~~~~l~~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 179 EVFTDGLTEDNVDAFLDGLDVVVEECD-----------------SLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6666555532 2347999999872 2222235557888888888877753
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.023 Score=36.59 Aligned_cols=35 Identities=37% Similarity=0.571 Sum_probs=30.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS 70 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~ 70 (228)
+++|.|| |++|-.++..|.+.+ .+|+++.+.+.-.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g-~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELG-KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTT-SEEEEEESSSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhC-cEEEEEeccchhh
Confidence 5789885 999999999999999 9999999855433
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.012 Score=49.69 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=33.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
+.+++|.|+||.|.+|+.+++.|.+.| +.|++.+|.
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCC-CeEEEeCCC
Confidence 356899999999999999999999999 999999984
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0071 Score=42.91 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=27.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.++|-|+|+ |-+|.+|++.|.+.| +.|..+..
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag-~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAG-HEVVGVYS 41 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTT-SEEEEESS
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCC-CeEEEEEe
Confidence 579999996 999999999999999 99988854
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.083 Score=43.39 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+++|+||+|.+|..+++.+...| .+|+++.++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s 177 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGS 177 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 447899999999999999999998999 789888773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.077 Score=43.33 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=31.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+++++|.|+|+ |.+|..++..|+..| ++|++.+++.
T Consensus 2 ~~~~~V~vIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~ 37 (295)
T PLN02545 2 AEIKKVGVVGA-GQMGSGIAQLAAAAG-MDVWLLDSDP 37 (295)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 34678999985 999999999999999 9999999843
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.033 Score=45.39 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
++++++|+|+ |..+++++-.|...|..+|+++.|..
T Consensus 123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999996 66799999999988867999999954
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.02 Score=47.22 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
||+|.|+|+ |.+|..++..|.+.| ++|.+++|.
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g-~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNG-HDVTLWARD 33 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECC
Confidence 689999995 999999999999999 999999984
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.023 Score=49.72 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~ 107 (228)
.+++++|+|+ |.+|++++..|.+.| .+|++.+|.. +..+.+........... +.. ...++|+||++...
T Consensus 331 ~~k~vlIiGa-GgiG~aia~~L~~~G-~~V~i~~R~~----~~~~~la~~~~~~~~~~~~~~--~l~~~DiVInatP~ 400 (477)
T PRK09310 331 NNQHVAIVGA-GGAAKAIATTLARAG-AELLIFNRTK----AHAEALASRCQGKAFPLESLP--ELHRIDIIINCLPP 400 (477)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHHhccceechhHhc--ccCCCCEEEEcCCC
Confidence 4689999995 899999999999999 7999888832 22222211101111111 111 13479999998743
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.019 Score=43.65 Aligned_cols=32 Identities=41% Similarity=0.584 Sum_probs=26.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|||.|+| .||+|..++..|.+.| ++|++++.+
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G-~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKG-HQVIGVDID 32 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTT-SEEEEE-S-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCC-CEEEEEeCC
Confidence 7899997 6999999999999999 999999983
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.41 Score=33.32 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=48.9
Q ss_pred CEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 33 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
|+|.|.|++ +-.|..+++.|.+.| ++|+.+.... ... .+.. ...++.+ ....+|.++.+..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~~----~~i------~G~~-~y~sl~e-~p~~iDlavv~~~--- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPKG----GEI------LGIK-CYPSLAE-IPEPIDLAVVCVP--- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTTC----SEE------TTEE--BSSGGG-CSST-SEEEE-S----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCCc----eEE------CcEE-eeccccC-CCCCCCEEEEEcC---
Confidence 579999987 778999999999999 9999986621 111 1222 2223333 2457898887652
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcc
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss 147 (228)
-.....+++.+.+.|+ .+++.++
T Consensus 65 ---------------~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 65 ---------------PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp ---------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred ---------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2233466777777788 5777766
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.078 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=31.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
++++|.|+|+ |.+|..++..|+..| ++|++++++..
T Consensus 2 ~~~kI~VIG~-G~mG~~ia~~la~~g-~~V~~~d~~~~ 37 (282)
T PRK05808 2 GIQKIGVIGA-GTMGNGIAQVCAVAG-YDVVMVDISDA 37 (282)
T ss_pred CccEEEEEcc-CHHHHHHHHHHHHCC-CceEEEeCCHH
Confidence 3678999995 999999999999999 99999988433
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.23 Score=39.70 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=72.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhcC------CCceEEEeccCCCcccCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIG------HPRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
.-+|.|.| .|.+|.+.+-.++..| ..++.+++-...+.+....++.. .+++. .+.......+.++||-.
T Consensus 20 ~~KItVVG-~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~---~~~Dy~~sa~S~lvIiT 95 (332)
T KOG1495|consen 20 HNKITVVG-VGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVV---ASKDYSVSANSKLVIIT 95 (332)
T ss_pred CceEEEEc-cchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceE---ecCcccccCCCcEEEEe
Confidence 35789998 4999999999998886 47898998866554443333221 12211 11111223478899999
Q ss_pred cCCCCcccc-cCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
||. +.. .+..-..++.|+...+.++..+-++.. .++.+|-
T Consensus 96 AGa---rq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSN 138 (332)
T KOG1495|consen 96 AGA---RQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSN 138 (332)
T ss_pred cCC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 874 222 233456789999999999999988875 5666664
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=46.34 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=30.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
|+|.|+| +||+|....-.|.+.| |+|++++...
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~G-HeVv~vDid~ 33 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELG-HEVVCVDIDE 33 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcC-CeEEEEeCCH
Confidence 7899998 7999999999999999 9999999843
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.065 Score=35.11 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=29.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
...++++|.|+ |.+|+.++..|.+.+..+|++.+|
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34789999997 999999999999984277877766
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.089 Score=45.81 Aligned_cols=70 Identities=16% Similarity=0.043 Sum_probs=47.6
Q ss_pred CCEEEEecCcchhHHH-HHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++|+|.|. |..|.+ +++.|.+.| ++|.+.+...... ...+ ....+.+..+. ....+.++|.||...|+.
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~~~G-~~V~~~D~~~~~~---~~~l-~~~gi~~~~~~-~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLLNLG-YKVSGSDLKESAV---TQRL-LELGAIIFIGH-DAENIKDADVVVYSSAIP 77 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHHhCC-CeEEEECCCCChH---HHHH-HHCCCEEeCCC-CHHHCCCCCEEEECCCCC
Confidence 689999997 679999 799999999 9999998754321 2222 22245554433 222334799999877754
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.089 Score=42.32 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEE-EcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIV-VDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
||++.|+| .|.+|+.+++.|.+.+ ..++.. .+|+ .+....+........ ..|..+ ...++|+|+.|+.
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~----~~~a~~~a~~~~~~~-~~~~~e-ll~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRN----LEKAENLASKTGAKA-CLSIDE-LVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCC----HHHHHHHHHhcCCee-ECCHHH-HhcCCCEEEEcCC
Confidence 57999999 5999999999998763 255554 4442 222222211111221 122222 2257999999874
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=41.78 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=25.9
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~ 63 (228)
+|+|.|++|-+|+.+++.+.+.+ .+++..
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~-~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAG-LEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCC-CEEEee
Confidence 68999999999999999998866 888774
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.066 Score=44.16 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.++++.|.| .|-||+.+++.|..-| .+|++.++.
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG-~~V~~~~~~ 168 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWG-FPLRCWSRS 168 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 479999998 6999999999999999 999999874
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.018 Score=44.09 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=26.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIV 62 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~ 62 (228)
|++.|+||+|.+|+.+++.|.+.| +.|++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g-~~v~~ 29 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG-LGVYI 29 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC-CEEEE
Confidence 689999999999999999999999 88863
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.11 Score=40.21 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=50.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|+|| |-+|..=++.|++.| .+|+++.... .+.+..+....++.+++.++......+++.||-+.
T Consensus 10 l~~k~VlvvGg-G~va~rKa~~ll~~g-a~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt 80 (210)
T COG1648 10 LEGKKVLVVGG-GSVALRKARLLLKAG-ADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAAT 80 (210)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhcC-CEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEeC
Confidence 34799999995 999999999999999 8999887743 34455555555666776444444445566666543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.029 Score=46.54 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=46.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..++++|+| +|.+|+..++.++.. +..+|.+.+|...+..+....+.....+++...+-.+....+.|+||++...
T Consensus 126 ~~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNA 202 (325)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCC
Confidence 358999998 599999988887643 4478999988544333332222211123333222223334589999988753
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.098 Score=42.74 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch-hhhhhcCCCceEEEecc---CC-CcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHD---VT-EPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~d---~~-~~~~~~~D~vi~~a 105 (228)
+++++.|+| +|.+|..++..+++....++.++......... ..... .++.....+ +. +..+.++|+|+.+.
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~---~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR---LGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH---cCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 357999999 89999998988887643677776543222211 11111 122221111 11 22345799999877
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
+. .........+.+.|+++|-.++..
T Consensus 79 ~a------------------~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 79 SA------------------GAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CH------------------HHHHHHHHHHHHcCCeEEECCccc
Confidence 41 112345556677788888888776
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.074 Score=43.74 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++|.|+|+ |.+|..++..|++.| ++|++++++.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g-~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKG-LQVVLIDVME 37 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 578999985 999999999999999 9999999843
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.049 Score=44.10 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=29.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
+++|+|.| .|.+|+.+++.|.+.| +.+.++.+...
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g-~~v~i~g~d~~ 37 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAG-LVVRIIGRDRS 37 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcC-CeEEEEeecCc
Confidence 57788877 7999999999999999 88877777433
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.22 Score=40.85 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+++|+|+++.+|..+++.+...| .+|++++++
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~ 200 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGS 200 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCC
Confidence 346799999999999999999999999 889888774
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.025 Score=48.08 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
++|+|||||++..+|..+++.|.+.| ++|++++..+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 47999999999999999999999999 9999998853
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.04 Score=44.85 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++|.|+|+ |.+|..++..|...| ++|++.+++.
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G-~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHG-FDVTIYDISD 36 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence 578999985 999999999999999 9999999853
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.03 Score=45.38 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+++++|+|+++.+|+.++..|++.| .+|+...+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCC-CeEEEEeC
Confidence 458999999999999999999999999 89988876
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.11 Score=40.40 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=23.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~ 66 (228)
|+|.|.| +|.||..+++.+... +..-+.+.+|.
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~ 35 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRD 35 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCC
Confidence 5788888 799999999988755 22445555663
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=44.71 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
+|+|.|+| .|++|..++..|.+ + ++|++++++..
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~-~-~~V~g~D~~~~ 39 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGK-S-RQVVGFDVNKK 39 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhc-C-CEEEEEeCCHH
Confidence 48899997 79999999999765 7 99999999433
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.042 Score=44.36 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+++++|.|+ |+.+++++-.|...|..+|+++.|... +.+.+.......+. + +.....+|+|||+.-.
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~----~a~~la~~~~~~~~--~--~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEK----TGKALAELYGYEWR--P--DLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHH----HHHHHHHHhCCcch--h--hcccccCCEEEECCcc
Confidence 468999995 999999999999998567999999543 22222111111110 0 1112358999998743
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.15 Score=44.38 Aligned_cols=73 Identities=18% Similarity=0.037 Sum_probs=46.9
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-----cccCCccEEEEccCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-----PLLIEVDQIYHLACPA 108 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~D~vi~~a~~~ 108 (228)
+|+|.|+ |..|...++.|.+.| +.|.+.++............+....+.+..+.-.+ ....++|.||...|+.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G-~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~ 79 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQG-WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIP 79 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCC-CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCC
Confidence 5899995 889999999999999 99999998543322211111222345555443222 1344789999877653
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.22 Score=43.49 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=48.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++|+|.|. |--|.+.++.|.+.| .+|++.+.+.........++.. .+.++.+.-....+.++|.||...|+.
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~g-~~v~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~d~vV~SpgI~ 80 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAHL-PAQALTLFCNAVEAREVGALAD--AALLVETEASAQRLAAFDVVVKSPGIS 80 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHcC-CEEEEEcCCCcccchHHHHHhh--cCEEEeCCCChHHccCCCEEEECCCCC
Confidence 689999997 889999999999999 9999988643322222122222 233443433333345789999877754
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.1 Score=42.12 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDN 65 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r 65 (228)
++++|.|+| .|.||+.+++.|.+. + .++.++..
T Consensus 5 ~~irIGIIG-~G~IG~~~a~~L~~~~~~-~el~aV~d 39 (271)
T PRK13302 5 PELRVAIAG-LGAIGKAIAQALDRGLPG-LTLSAVAV 39 (271)
T ss_pred CeeEEEEEC-ccHHHHHHHHHHHhcCCC-eEEEEEEC
Confidence 358999998 699999999999874 5 77775543
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.22 Score=43.16 Aligned_cols=76 Identities=24% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCcccCCccEEEEccCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+++.-+|+|.|. |..|.++++.|.+.| ++|.+.+..... .....+... .++.+..+......+.++|.||...|+
T Consensus 3 ~~~~~~~~v~G~-G~sG~s~a~~L~~~G-~~v~~~D~~~~~--~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i 78 (448)
T PRK03803 3 MQSDGLHIVVGL-GKTGLSVVRFLARQG-IPFAVMDSREQP--PGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGL 78 (448)
T ss_pred cccCCeEEEEee-cHhHHHHHHHHHhCC-CeEEEEeCCCCc--hhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCC
Confidence 456679999996 779999999999999 999999975432 111122111 245555443323334478999987765
Q ss_pred C
Q 027129 108 A 108 (228)
Q Consensus 108 ~ 108 (228)
.
T Consensus 79 ~ 79 (448)
T PRK03803 79 A 79 (448)
T ss_pred C
Confidence 3
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.16 Score=41.31 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=26.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+.=|+|.|+ |.+|++++..|++.|..++.+++-
T Consensus 74 ~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 74 NSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred CcEEEEEec-CchhHHHHHHHHHhcCceEEEech
Confidence 345777775 999999999999999667777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 228 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 5e-84 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 3e-81 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 4e-20 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 5e-20 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 1e-19 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 2e-18 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 2e-17 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 5e-16 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 2e-15 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-15 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 2e-15 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 2e-15 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 2e-15 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 4e-15 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 4e-14 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 5e-14 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 7e-14 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 7e-13 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-12 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 4e-12 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 1e-11 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 2e-11 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-11 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 3e-11 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-11 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 5e-11 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 5e-11 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-11 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-11 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-11 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-11 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 9e-11 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 1e-10 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-10 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 2e-10 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 2e-10 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 3e-10 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-10 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 1e-09 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-09 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-09 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-09 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 1e-09 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 3e-09 | ||
| 4b8w_A | 319 | Crystal Structure Of Human Gdp-L-Fucose Synthase Wi | 5e-08 | ||
| 4b8z_A | 320 | Crystal Structure Of Human Gdp-l-fucose Synthase Wi | 5e-08 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-08 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-08 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 1e-07 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-07 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-07 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 7e-07 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 7e-07 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 7e-07 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-06 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 3e-05 | ||
| 2gn4_A | 344 | Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd | 7e-05 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 2e-04 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 3e-04 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 7e-04 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319 | Back alignment and structure |
|
| >pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-137
Identities = 147/223 (65%), Positives = 174/223 (78%), Gaps = 4/223 (1%)
Query: 6 SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
S+ +H+ +S K RIL+TGGAGF+GSHL DKLM + +EV VVDN
Sbjct: 4 SHHHHHHSSGRENLYFQGHMEK---DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN 59
Query: 66 YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
+FTG K N+ WIGH FELI HDV EPL IEVDQIYHLA PASP Y YNP+KT+KTN
Sbjct: 60 FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 119
Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185
IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET
Sbjct: 120 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 179
Query: 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++
Sbjct: 180 MCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQ 222
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-126
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
MR+L+ G GFIG+HL ++L+ + EV +D D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 92 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
TSEVYG DE + V P+ R Y K++ + +++ Y + G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 205 NTYGPRMN------IDDGRVVSNFIAQAIR 228
N GPR++ I R ++ I +
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVE 206
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 341 bits (876), Expect = e-118
Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 28/239 (11%)
Query: 6 SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
+ +H+ + T P ++L+ G GFIG HL +++E + + +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMKA-----KKVLILGVNGFIGHHLSKRILE-TTDWEVFGMD 56
Query: 66 YFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVK 119
T +L + H R D+T E + + D I L A+P Y P++
Sbjct: 57 MQTDRLGDL---VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113
Query: 120 TIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESY-WGNVNPIGVRSC 175
+ + L ++ A + G ++ STSEVYG D P + +G +N R
Sbjct: 114 VFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--RWI 171
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIR 228
Y K++ + +++ Y G+ + R FN GP ++ RVV+ F+ +R
Sbjct: 172 YACSKQLMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVR 229
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 333 bits (857), Expect = e-115
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 14/233 (6%)
Query: 6 SNGNHNSASKPPPTPSPLRFSKFF-QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
+ G N T L +++ N++I +TG GFI SH+ +L E + VI D
Sbjct: 2 AMGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASD 60
Query: 65 NYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPASPI-FYKYNPVKT 120
+++ + + F L+ V E + VD +++LA + F + N
Sbjct: 61 ---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI 117
Query: 121 IKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESY--WGNVNPIGVRSCYD 177
+ N + + NM+ A+ G R S++ +Y + + P + +
Sbjct: 118 MYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFG 177
Query: 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIR 228
K E L Y++ GIE RI R N YGP GR + F +A
Sbjct: 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQT 230
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-105
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 22/247 (8%)
Query: 1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
M + +H+S P + P+ + +N ++V GGAGF+GS+LV +L+E N+V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQV 60
Query: 61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKY 115
VVDN + K N+ HP +T+ L+ E D ++HLA +
Sbjct: 61 HVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIH 117
Query: 116 NPVKTIKTNVIGTLNMLGLA---KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172
+P+ + N + TL + KR+ + + + + V+
Sbjct: 118 DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNN 177
Query: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR-----------VVSN 221
S Y K E YH+QH + AR N YGP + GR V
Sbjct: 178 DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPT 237
Query: 222 FIAQAIR 228
FI +A++
Sbjct: 238 FIYKALK 244
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 2e-91
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 19/203 (9%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIR 87
RIL+TGGAGFIG HL L+ EV V+D+ K++ P EL
Sbjct: 6 LKHRILITGGAGFIGGHLARALVA-SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEE 64
Query: 88 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
D++ +V +YHLA S P+ + NV ++L L VG ++++ S
Sbjct: 65 RDLS-----DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE-IRIARIFN 205
T EVYG P E +P+ RS Y K E + + R + I R FN
Sbjct: 119 TCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
Query: 206 TYGPRMNIDDGRVVSNFIAQAIR 228
YGP +V A +
Sbjct: 174 VYGPGE--RPDALVPRLCANLLT 194
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 1e-77
Identities = 69/200 (34%), Positives = 96/200 (48%), Gaps = 18/200 (9%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MRI+VTGGAGFIGSHLVDKL+E EV+VVDN +G ++ + +P EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 93 PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
I+ D ++H A P+ NV+ T N+L A++ G ++ S+S
Sbjct: 55 YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
VYGD V P E P S Y K E + Y R G+ R N G
Sbjct: 115 TVYGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169
Query: 209 PRMNIDDGRVVSNFIAQAIR 228
PR+ V+ +FI + R
Sbjct: 170 PRL---RHGVIYDFIMKLRR 186
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-54
Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 27/203 (13%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
+++I VTGG GF+G ++V+ + + N I++ N +E D T
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKAIND--------YEYRVSDYT 52
Query: 92 EPLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 145
LI VD + HLA + N I T N+ + I+
Sbjct: 53 LEDLINQLNDVDAVVHLAATRGSQ-----GKISEFHDNEILTQNLYDACYENNISNIVYA 107
Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
ST Y D P +E P Y K E + Y R+ G+ I+ R +
Sbjct: 108 STISAYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAH 162
Query: 206 TYGPRMNIDDGRVVSNFIAQAIR 228
YG + +++ F QA
Sbjct: 163 LYGFNE--KNNYMINRFFRQAFH 183
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-53
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
+ R+L+ G GFIG+HL ++L+ + EV +D D + +++ HP F +
Sbjct: 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEG 367
Query: 89 DVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
D++ E + + D + L A+PI Y NP++ + + L ++ + RI
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 427
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNV-NPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
+ STSEVYG DE + + P+ R Y K++ + +++ Y + G++ +
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 487
Query: 201 ARIFNTYGPRMN------IDDGRVVSNFIAQAIR 228
R FN GPR++ I R ++ I +
Sbjct: 488 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 521
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 6e-53
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 22/202 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
I+VTGGAGFIGSH+VDKL E+ NE++V+DN +G+++ + + L++ D+
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFV-----NEAARLVKADLAA 54
Query: 93 PLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
+ + ++++H+A I + NP + + NV+ T +L ++ G RI+ TS
Sbjct: 55 DDIKDYLKGAEEVWHIAANPDVRIGAE-NPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS 113
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
TS VYG+ V P E Y +PI S Y K E L+ Y ++ I R N
Sbjct: 114 TSTVYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANV 168
Query: 207 YGPRMNIDDGRVVSNFIAQAIR 228
G R V+ +FI + R
Sbjct: 169 IGRRS---THGVIYDFIMKLKR 187
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-51
Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 41/196 (20%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M I++TG GF+G +L L + + V + + E
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHR-------------------QTKEEELE 41
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
L++ D I HLA P + + NV ++L + R + + +S +
Sbjct: 42 SALLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
NP Y E K E L+ +Y ++G + I R N +G
Sbjct: 98 TQD------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCK 139
Query: 213 IDDGRVVSNFIAQAIR 228
+ V++ F + R
Sbjct: 140 PNYNSVIATFCYKIAR 155
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 4e-50
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 20/234 (8%)
Query: 9 NHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68
+H+ S + + L+TG AGFIGS+L++ L++ +V+ +DN+ T
Sbjct: 4 HHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFAT 62
Query: 69 GSKDNLRKW------IGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNP 117
G + NL + F+ I+ D+ VD + H A S +P
Sbjct: 63 GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDP 122
Query: 118 VKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176
+ + TN+ G LNML A+ ++S YGD P+ E G P+ S Y
Sbjct: 123 ITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPY 177
Query: 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIR 228
K V E + R +G R FN +G R + + V+ + + I+
Sbjct: 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ 231
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 3e-45
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 29/206 (14%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
++ +TG G IGSH+ + L+E ++V+ +DN+ TG +++L+ HP + + +
Sbjct: 22 KKVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLK---DHPNLTFVEGSIAD 77
Query: 93 PLLIE-------VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
L+ D + H A P + TN +G N++ AK+ R +
Sbjct: 78 HALVNQLIGDLQPDAVVHTAASYKDP----DDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133
Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
T+ YG P+ P + NP S Y K E Y G++ R
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED----YLEYSGLDFVTFR 185
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIR 228
+ N GPR + F +
Sbjct: 186 LANVVGPRNVSG---PLPIFFQRLSE 208
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 5e-44
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 29/216 (13%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNL--------RKWIGHP 81
N IL+TGGAGF+GS+L E + K +V+V+D + + + + K +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 82 RFELIRHDVTEPLLIE------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
+ E+I D+ PL + D ++H A + + N +KTN LN+L +
Sbjct: 69 KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM---LNQELVMKTNYQAFLNLLEI 125
Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
A+ A+++ S++ VYG+ P N +P + Y K + + + +
Sbjct: 126 ARSKKAKVIYASSAGVYGNTKA-PNVVGK--NESPE---NVYGFSKLCMDEFVLSHS--N 177
Query: 195 GIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIR 228
R FN YGPR + +V A+
Sbjct: 178 DNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMA 213
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 9e-44
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 30/199 (15%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
R+LVTG AG +GS + L +EV + D G+ + E++ D+ +
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGAAEAH--------EEIVACDLADA 54
Query: 94 LLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
+ D I HL + P ++ N+IG N+ A+ +G RI+ S
Sbjct: 55 QAVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
Query: 147 TSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
++ G P D P S Y K E L Y+ + IE RI +
Sbjct: 110 SNHTIGYYPRTTRIDTEV--PRRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 206 TYGPRMNIDDGRVVSNFIA 224
+ D R+++ +++
Sbjct: 165 CFPKPK---DARMMATWLS 180
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 2e-43
Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRF 83
S L+TG AGFIGS+L++KL++ VI +DN+ TG + NL + RF
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81
Query: 84 ELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLA 135
I D+ + E VD + H A S +P+ T TN+ G LN+L A
Sbjct: 82 CFIEGDIRDLTTCEQVMKGVDHVLHQAALGS---VPRSIVDPITTNATNITGFLNILHAA 138
Query: 136 KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
K ++S YGD P+ E G NP+ S Y K V E Y R +
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTY 193
Query: 195 GIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIR 228
G + R FN +G R + + V+ + A ++
Sbjct: 194 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLK 229
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 2e-42
Identities = 44/206 (21%), Positives = 77/206 (37%), Gaps = 17/206 (8%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
I+VTGGAGFIGS++V L + +++VVDN G+K NL + + + D
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKED 102
Query: 90 VTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
++ V+ I+H +S + + + N + +L L
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLY 160
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
S++ YG + P+ + + K + + + + +I R F
Sbjct: 161 ASSAATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYF 215
Query: 205 NTYGPRMNIDD--GRVVSNFIAQAIR 228
N YGPR V + Q
Sbjct: 216 NVYGPREGHKGSMASVAFHLNTQLNN 241
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-41
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 19/203 (9%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
I+VTGGAGFIGS++V L + +++VVDN G+K NL + + + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59
Query: 94 LLIE-----VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
++ V+ I+H AC ++ +++ + N + +L L S+
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116
Query: 148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
+ YG + P+ + Y K + + + + +I R FN Y
Sbjct: 117 AATYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 208 GPRMNIDD--GRVVSNFIAQAIR 228
GPR V + Q
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNN 194
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-41
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 26/205 (12%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
ILVTG +G IG+ LV L E + ++ + + I DV+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52
Query: 95 LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
I+ +D I+HLA S K +P K N+ GT N+L AK+ ++++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 147 TSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
T V+G + P R+ + K AE L Y+ + G+++R R
Sbjct: 112 TIGVFGPETPKNKVPSITI--TRP---RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 206 TYGPRMNIDDG--RVVSNFIAQAIR 228
+ G A++
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVK 191
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-41
Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 31/220 (14%)
Query: 29 FQSNMRILVTGGAGFIGSHLVDKLME------NEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
+ M I + G AG +G L +L++ + ++D + +
Sbjct: 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGA 65
Query: 83 FELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
+ D++ P E D I+HLA S + K + N+ GT + +
Sbjct: 66 VDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIR 124
Query: 137 RVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
R++ TS+ V+G PL +P + + P+ + Y K + E L+ DY
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSDY 179
Query: 191 HRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIR 228
R+ + R+ + SN + + +
Sbjct: 180 SRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLV 219
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 6e-41
Identities = 40/207 (19%), Positives = 69/207 (33%), Gaps = 21/207 (10%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
N +IL+ G G IG+ L KL + E ++ + + D + +
Sbjct: 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------GPFEVVNAL 55
Query: 92 EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARIL 143
+ IE + IY +A S + NP N+ ++L LAK +I
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
S+ V+G + + Y K+ E YH +G+++R R
Sbjct: 115 WPSSIAVFGPTTPKENTP----QYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRY 170
Query: 204 FNTYGPRMNIDDGR--VVSNFIAQAIR 228
G + +AI
Sbjct: 171 PGLISWSTPPGGGTTDYAVDIFYKAIA 197
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-40
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MR+LVTGGAGFIGSH+V+ L+ EV V+DN TG ++N+ R D+ +
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRD 54
Query: 93 PLLIE-------VDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA- 140
+E + H A S +PV + N++G LN+L ++ G
Sbjct: 55 KEGVERAFREFRPTHVSHQAAQASVKVSVE----DPVLDFEVNLLGGLNLLEACRQYGVE 110
Query: 141 RILLTSTSE-VYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
+++ ST +YG+ P +E++ P S Y K E + Y + +G++
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKW 165
Query: 199 RIARIFNTYGPRMNID-DGRVVSNFIAQAIR 228
R N YGPR + + VV+ F + ++
Sbjct: 166 VSLRYGNVYGPRQDPHGEAGVVAIFAERVLK 196
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-39
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 35/208 (16%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S+MRIL+TGGAG +GS+L++ + + +E++V+DN+ TG ++ L +I V
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPP---VAGLSVIEGSV 74
Query: 91 TEPLLIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
T+ L+E + H A P NV G++N+ A + G
Sbjct: 75 TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAG 127
Query: 140 A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
R+L T+ YG P P P + Y K E + + +
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGE----AFLMMSDVPV 178
Query: 199 RIARIFNTYGPRMNIDDGRVVSNFIAQA 226
R+ N GPR+ I G + F +
Sbjct: 179 VSLRLANVTGPRLAI--G-PIPTFYKRL 203
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-38
Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 33/210 (15%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ R+LVTG AG +G + ++L E++ + + P E ++ D+
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLA--PMAEILRLADLSPLDPA-------GPNEECVQCDL 52
Query: 91 TEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
+ ++ D I HL + + ++ N+IG N+ A+ G RI+
Sbjct: 53 ADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHGQPRIVF 108
Query: 145 TSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
S++ G P P Y K E L Y + G E + RI
Sbjct: 109 ASSNHTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 204 FNTYGPRMNIDDGRVVSNFI-----AQAIR 228
+ ++ R++S + I
Sbjct: 164 GSCTPEP---NNYRMLSTWFSHDDFVSLIE 190
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 48/254 (18%), Positives = 74/254 (29%), Gaps = 60/254 (23%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---------------- 73
R++V GG G+ G L + EV +VDN D+
Sbjct: 9 HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67
Query: 74 LRKW--IGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASP-----IFYKYNPVK 119
+ +W + EL D+ + + D + H + + V
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125
Query: 120 TIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESY---------WGNVN 168
T NVIGTLN+L K ++ T YG P + +E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGYITITHNGRTDTLPY 184
Query: 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM---------------NI 213
P S Y K + + GI YG + +
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 214 DDGRVVSNFIAQAI 227
G ++ F QA
Sbjct: 245 VFGTALNRFCVQAA 258
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-29
Identities = 57/206 (27%), Positives = 85/206 (41%), Gaps = 36/206 (17%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIGHPRFELIRHDVT 91
++L+TGG GF+GS+L + ++IV DN G+ DNL FE + D+
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60
Query: 92 EPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAKR- 137
+ D +HLA S I NP + NV GTLN+L ++
Sbjct: 61 NKNDVTRLITKYMPDSCFHLA--GQVAMTTS-I---DNPCMDFEINVGGTLNLLEAVRQY 114
Query: 138 -VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG------------KRVAE 184
I+ +ST++VYGD L + + + YDE K A+
Sbjct: 115 NSNCNIIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAAD 173
Query: 185 TLMFDYHRQHGIEIRIARIFNTYGPR 210
M DY R G+ + R + YG R
Sbjct: 174 QYMLDYARIFGLNTVVFRHSSMYGGR 199
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-28
Identities = 29/205 (14%), Positives = 67/205 (32%), Gaps = 20/205 (9%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
++++ V G G +G H + ++++++ + S+ + + + E ++
Sbjct: 12 AHVKYAVLGATGLLGHHAARAIRA-AGHDLVLI--HRPSSQ---IQRLAYLEPECRVAEM 65
Query: 91 TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
+ +E +D + A + + + + T + RIL
Sbjct: 66 LDHAGLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123
Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
++ P P E + + P G +S Y K + + R +G+ + I
Sbjct: 124 VGSAYAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQAR-NGLPVVIGIP 181
Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIR 228
G D G I
Sbjct: 182 GMVLGEL---DIGPTTGRVITAIGN 203
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-27
Identities = 66/201 (32%), Positives = 92/201 (45%), Gaps = 39/201 (19%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVVDN--YFTGSKDNLRKWIGHPRFEL 85
MR+LVTGGAGFIGSH V +L+ EVIV+D+ Y G++ NL PR
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRF 59
Query: 86 IRHDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLN 130
+ D+ L VD I H A + +F +TNV GT
Sbjct: 60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGAS--VF--------TETNVQGTQT 109
Query: 131 MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
+L A G R++ ST++VYG D W +P+ S Y K ++ +
Sbjct: 110 LLQCAVDAGVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARA 164
Query: 190 YHRQHGIEIRIARIFNTYGPR 210
YHR +G+++RI R N YGP
Sbjct: 165 YHRTYGLDVRITRCCNNYGPY 185
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 36/199 (18%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIR 87
+M++LVTGG GFIGS+ + ++E + EVI +D Y + NL+ PR+ ++
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60
Query: 88 HDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML 132
DV + L+ +VD + HLA P IF + +NVIGT +L
Sbjct: 61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPE--IF--------LHSNVIGTYTLL 110
Query: 133 GLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
+R R + ST EVYGD + + + + + S Y K ++ L+ +
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGD-I----LKGSFTENDRLMPSSPYSATKAASDMLVLGW 165
Query: 191 HRQHGIEIRIARIFNTYGP 209
R + + I R N YGP
Sbjct: 166 TRTYNLNASITRCTNNYGP 184
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 6e-24
Identities = 62/202 (30%), Positives = 84/202 (41%), Gaps = 37/202 (18%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIRHD 89
I+VTGGAGFIGS+ V + N + V V+D Y G+K NL I R EL+ D
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEA-ILGDRVELVVGD 62
Query: 90 VT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNMLGL 134
+ + L + D I H A P+ F I TN IGT +L
Sbjct: 63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPS--PF--------IHTNFIGTYTLLEA 112
Query: 135 AKRVGARILLTSTSEVYGD-PLVHPQDESYWGNV------NPIGVRSCYDEGKRVAETLM 187
A++ R ST EVYGD PL G S Y K ++ ++
Sbjct: 113 ARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIV 172
Query: 188 FDYHRQHGIEIRIARIFNTYGP 209
+ R G++ I+ N YGP
Sbjct: 173 KAWVRSFGVKATISNCSNNYGP 194
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 9e-24
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 31/187 (16%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
IL+ GGAG+IGSH V KL++ E V+VVDN TG +D + + D+
Sbjct: 2 NSILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRD 55
Query: 92 EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
+ L +V + + H A P++ NV G L +L +
Sbjct: 56 KAFLRDVFTQENIEAVMHFAA------DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK 109
Query: 140 A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
+ + +ST+ YG+ V E + Y E K E ++ Y + +
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAIEKMLHWYSQASNLRY 164
Query: 199 RIARIFN 205
+I R FN
Sbjct: 165 KIFRYFN 171
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-23
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 28/200 (14%)
Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRF 83
F + M ILVTGGAGFIGS+ V ++++ + ++I D Y +G+ +N++ HP +
Sbjct: 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNY 77
Query: 84 ELIRHDVTEPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLN 130
++ ++ L+E V I + A A S I NP+ TNVIGT+
Sbjct: 78 YFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRS-I---ENPIPFYDTNVIGTVT 131
Query: 131 MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
+L L K+ +++ ST EVYG L + P+ S Y K A+ +
Sbjct: 132 LLELVKKYPHIKLVQVSTDEVYGS-L---GKTGRFTEETPLAPNSPYSSSKASADMIALA 187
Query: 190 YHRQHGIEIRIARIFNTYGP 209
Y++ + + + + R N YGP
Sbjct: 188 YYKTYQLPVIVTRCSNNYGP 207
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 3e-22
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 47/212 (22%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--YFTGSKDNLRKWIGHPRFELIRHDV 90
M+IL+TGGAGFIGS +V +++N ++ V+ +D Y G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADI 59
Query: 91 TEPLLIE-------VDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML- 132
+ I D + HLA PA F I+TN++GT +L
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPA--AF--------IETNIVGTYALLE 109
Query: 133 ---------GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVN------PIGVRSCYD 177
G K+ R ST EVYGD L HP + + S Y
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYS 168
Query: 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
K ++ L+ + R +G+ + N YGP
Sbjct: 169 ASKASSDHLVRAWRRTYGLPTIVTNCSNNYGP 200
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-21
Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 47/213 (22%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
S+MR+LV GGAG+IGSH V L+ + + V++VD+ + ++
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 91 TEPL--------LIEVDQIYHLACPA--SPIFYKYNPVKTI------------------- 121
L D + + +F ++ P+ +
Sbjct: 61 GPKPPWADRYAALEVGD----VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKY 116
Query: 122 -KTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVH-------PQDESYWGNVNPIGV 172
NV+G L +L +I+ +S++ ++G+P + P D +
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINA-----KKSP 171
Query: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
S Y E K +AE ++ D +GI+ R FN
Sbjct: 172 ESPYGESKLIAERMIRDCAEAYGIKGICLRYFN 204
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 6e-19
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 33/194 (17%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
+ ILVTGGAG+IGSH +L+ + +V++ DN ++ + + I
Sbjct: 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHET 62
Query: 89 DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
DV++ + + H A A PI Y N N+ L++L +
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRV 115
Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
+ + ++ S+S VYG P P DE++ P+ + Y + K +AE ++ D
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAA 170
Query: 194 HGIEIRIA--RIFN 205
R+A R FN
Sbjct: 171 DP-SWRVATLRYFN 183
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-17
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 36/198 (18%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
++ +LVTGGAG+IGSH V +L+EN + +V DN + D++ + +
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68
Query: 89 DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
D+ + +E +D + H A P+ Y +N N++GT+ +L L
Sbjct: 69 DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHN-------NILGTVVLLEL 121
Query: 135 AKRVGARILLTSTSE-VYGDPLVHPQ----DESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
++ + S+S VYGD P E P+G + Y K E ++ D
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILND 176
Query: 190 YHRQHGIEIRIA--RIFN 205
+ + A R FN
Sbjct: 177 LYNSDKKSWKFAILRYFN 194
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 79.0 bits (196), Expect = 1e-17
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 34/193 (17%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
MR+LVTGG+G+IGSH +L++N ++VI++DN + L + +G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59
Query: 91 TEPLLIE-------VDQIYHLAC-------PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMR 112
Query: 137 RVGARILLTSTSE-VYGDPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQH 194
+ + S+S VYGD P ES+ P G +S Y + K + E ++ D +
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQ 167
Query: 195 GIEIRIA--RIFN 205
+ IA R FN
Sbjct: 168 P-DWSIALLRYFN 179
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 7e-16
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 35/190 (18%)
Query: 34 RILVTGGAGFIGSHLVDKLME-----------NEKNEVIVVDNYFTGSKDNLRKWIGHP- 81
R+ VTGG GF+GS ++ L+E + + + V L G
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV---------SFLTNLPGASE 53
Query: 82 RFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
+ D++ P + I+H A P K V G L +L
Sbjct: 54 KLHFFNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACV 112
Query: 137 RVGA--RILLTST--SEVYGDPLVHPQDESYWGNVNPIGVR----SCYDEGKRVAETLMF 188
R + TS+ + + DES W +V+ + Y K +AE +
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVL 172
Query: 189 DYHRQHGIEI 198
++ Q+GI++
Sbjct: 173 EFGEQNGIDV 182
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 27/189 (14%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
+ +I++ G +GF+GS L+++ + EV V + ++ + ++ + D
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALN-RGFEVTAV----VRHPEKIKI--ENEHLKVKKAD 54
Query: 90 VTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
V+ + D + P N + L ++ K+ G R L
Sbjct: 55 VSSLDEVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFL 108
Query: 144 LTST-SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ ++ P + D + K + E + ++ I+
Sbjct: 109 MVGGAGSLFIAPGLRLMDSGEV-------PENILPGVKALGEFYLNFLMKEKEIDWVFFS 161
Query: 203 IFNTYGPRM 211
P +
Sbjct: 162 PAADMRPGV 170
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 4e-15
Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 58/234 (24%)
Query: 10 HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVI------ 61
+ + P P+P +L+TG GF+G +LV +L+ +I
Sbjct: 61 ATAVNLPGPSPEL----------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110
Query: 62 --------VVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEP-----------LLIEVDQ 100
+ + +G + LR + + R E++ D +EP L VD
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDL 170
Query: 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYG------- 152
I A A + Y + NV GT ++ +A ST++V
Sbjct: 171 IVDSA--AMVNAFPY--HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAF 226
Query: 153 ---DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
+ G Y K E L+ + + + + + R
Sbjct: 227 TEDADIRVISPTRTVDGGWAGG----YGTSKWAGEVLLREANDLCALPVAVFRC 276
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-15
Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 35/190 (18%)
Query: 34 RILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNYFTGSKDNLRKWIGHPRF 83
V GG GF+ S LV L++ + N+ V +L +
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV---------SHLLELQELGDL 61
Query: 84 ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
++ R D+T+ + D ++H+A P + IK + G +N++ R
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNVMKACTRA 120
Query: 139 GA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSC----YDEGKRVAETLMF 188
+ R++LT S + V + L DE W ++ + Y K +AE +
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAW 180
Query: 189 DYHRQHGIEI 198
+ ++ I++
Sbjct: 181 KFAEENNIDL 190
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-14
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 42/201 (20%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-----FTGSK----DNLRKWIGHPR 82
++LVTGGAG+IGSH V +L+E +V+DN+ GS +++ G
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGR-S 59
Query: 83 FELIRHDVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGT 128
E D+ + ++ + H A P+ Y N+ GT
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGT 112
Query: 129 LNMLGLAKRVGARILLTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSC-YDEGKRVAETL 186
+ +L + K G + L+ S+S VYG+P P DE++ P G + Y + K E +
Sbjct: 113 IQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEM 167
Query: 187 MFDYHRQHGIEIRIA--RIFN 205
+ D + R FN
Sbjct: 168 IRDLCQADK-TWNAVLLRYFN 187
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-14
Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
+MR L+TG AGF+G +L + L E+N EV G+ P E+I
Sbjct: 10 HGSMRALITGVAGFVGKYLANHLT--EQNVEVF-------GTS--RNNEAKLPNVEMISL 58
Query: 89 DVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
D+ + ++ ++ D I+HLA S + N T TNV GTL++L +
Sbjct: 59 DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDS--W--LNKKGTFSTNVFGTLHVLDAVRD 114
Query: 138 VG--ARILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
RIL +SE YG L P E N + S Y K L Y +
Sbjct: 115 SNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKA 169
Query: 194 HGIEIRIARIFNTYGPR 210
+G++I R FN GP
Sbjct: 170 YGMDIIHTRTFNHIGPG 186
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-13
Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 36/193 (18%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNY-FTGSKDNLRKWIG 79
+ + VTG +GFIGS LV +L+E + N V ++ +L
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL----- 58
Query: 80 HPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLG 133
L + D+ + + ++H+A P F +P IK + G L ++
Sbjct: 59 ----TLWKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMK 112
Query: 134 LAKRVGA--RILLTST--SEVYGDPLVHPQDESYWGNVNPIGVRSC----YDEGKRVAET 185
R++ TS+ + + + DES W ++ + Y K +AE
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQ 172
Query: 186 LMFDYHRQHGIEI 198
+ Y +++ I+
Sbjct: 173 AAWKYAKENNIDF 185
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-13
Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 55/218 (25%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRKWIGHP-- 81
+LVTG GF+ SH+V++L+E+ Y NL+K
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEH---------GYKVRGTARSASKLANLQKRWDAKYP 60
Query: 82 -RFE-LIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
RFE + D+ + ++ + H+ AS + + + + + GTLN L
Sbjct: 61 GRFETAVVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRA 117
Query: 135 AKRVGA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSCYDEG--------- 179
A + R +LT ST DE W N +
Sbjct: 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLW 174
Query: 180 -----KRVAETLMFDYHRQHGIEIRIARIFN---TYGP 209
K AE + + ++ + + T G
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTLNAV-LPNYTIGT 211
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 1e-12
Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 40/203 (19%)
Query: 36 LVTGGAGFIGSHLVDKL----MENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
L+ G G IG+ L + L +V V ++ W ++ D++
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------ARRTRPAWHEDNPINYVQCDIS 58
Query: 92 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RIL 143
+P L + + H+ + + + N N+L I
Sbjct: 59 DPDDSQAKLSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116
Query: 144 LTSTSEVYGDPLVH---------PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
L + + Y P P E YD + ++ + ++
Sbjct: 117 LQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYM---NFYYDL----EDIMLEEVEKKE 169
Query: 195 GIEIRIARIFNTYGPR----MNI 213
G+ + R N +G MN+
Sbjct: 170 GLTWSVHRPGNIFGFSPYSMMNL 192
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-----NLRK 76
+ + N IL+TGG G G V K+++ + I+V + S+D +
Sbjct: 11 SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV---Y--SRDELKQSEMAM 65
Query: 77 WIGHPRFELIRHDV-----TEPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIG 127
PR DV L VD H A P + +YNP++ IKTN++G
Sbjct: 66 EFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMG 121
Query: 128 TLNMLGLAKRVG-ARILLTST 147
N++ + ++++ ST
Sbjct: 122 ASNVINACLKNAISQVIALST 142
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-10
Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 34/208 (16%)
Query: 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-------DNYFTGSKDNLRKW 77
+ F+Q R+ VTG GF G L L + V + F + +
Sbjct: 3 NNSFWQ-GKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETA--RVADG 58
Query: 78 IGHPRFELIRHDVTEPLLIEV--DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNML 132
+ ++ + + E + ++H+A A P+ Y PV+T TNV+GT+ +L
Sbjct: 59 MQSEIGDIRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLL 115
Query: 133 GLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
+ VG ++ ++ + Y + + + +G Y K AE + Y
Sbjct: 116 EAIRHVGGVKAVVNITSDKCYD----NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSY 171
Query: 191 ---------HRQHGIEIRIARIFNTYGP 209
+ QHG + R N G
Sbjct: 172 RNSFFNPANYGQHGTAVATVRAGNVIGG 199
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
MR+LV G G + +L+ +L + +E + +++ + +++ ++
Sbjct: 20 QGMRVLVVGANGKVARYLLSELKN-KGHEPVA----MVRNEEQGPELRERGASDIVVANL 74
Query: 91 TEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
E +D + A + P KTI ++ G + + A++ G R ++ S
Sbjct: 75 EEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130
Query: 147 T 147
+
Sbjct: 131 S 131
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-07
Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 18/178 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M+I + G G GS ++++ +EV + + H +++ D+ +
Sbjct: 1 MKIGIIGATGRAGSRILEEAKN-RGHEVTA----IVRNAGKIT--QTHKDINILQKDIFD 53
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVY 151
L ++ + + +V +++ + R+L+ +
Sbjct: 54 LTLSDLSDQNVVVDAYGI------SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107
Query: 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
+D + + Y + A+ L Q + P
Sbjct: 108 Q----IDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEP 161
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 38/213 (17%), Positives = 63/213 (29%), Gaps = 38/213 (17%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
+IL+ G G +G L +L + +EV + S + + ++ R D
Sbjct: 4 SKILIAG-CGDLGLELARRLTA-QGHEVTGL----RRSAQPMPAGVQTLIADVTRPDTLA 57
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
++ +I AS +Y+ + V G N L + + S++ VY
Sbjct: 58 SIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113
Query: 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP-- 209
G + DE + AE L+ I R YGP
Sbjct: 114 GQEVEEWLDEDTP--PIAKDFSG---KRMLEAEALL------AAYSSTILRFSGIYGPGR 162
Query: 210 ---------RMNIDDGRVVSNFI-----AQAIR 228
+N I A I
Sbjct: 163 LRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIA 195
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 24/136 (17%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ +LVTG +G G + KL E V S K ++ D+
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKI--GGEADVFIGDI 57
Query: 91 TEPLLIE-----VDQIYHLA-------------CPASPIFYKYNPVKTIKTNVIGTLNML 132
T+ I +D + L P F + + + IG N +
Sbjct: 58 TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117
Query: 133 GLAKRVG-ARILLTST 147
AK G I++ +
Sbjct: 118 DAAKVAGVKHIVVVGS 133
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 24 RFSKFFQSN-MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
R S F + + + +TG G +G L +L +EVI + + K P
Sbjct: 138 RTSTLFDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQL----VRKEPKPGKRFWDPL 192
Query: 83 FELIRHDVTEPLLIEVDQIYHLA 105
LL D + HLA
Sbjct: 193 NPASD------LLDGADVLVHLA 209
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 6e-06
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
I V G AG IG + L + V V D+ L + + D +
Sbjct: 6 WNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDAKD 59
Query: 93 P 93
Sbjct: 60 E 60
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-06
Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 51/220 (23%)
Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----LRKWIGHPR 82
F + +IL+T + D L + + + T + D L K++
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 83 FELIRHDV--TEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
+L +V T P + E + A+ +K+ + T + +LN+L A
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPA- 369
Query: 137 RVGARILLTSTSEVYGDPLVHPQD--------ESYWGNVNPIGVRSCYDE--GKRVAE-- 184
+++ V P W +V V ++ + E
Sbjct: 370 ---------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 185 ---------TLMFDYHRQHGIEIRI-ARIFNTYGPRMNID 214
++ + + E + I + Y D
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-06
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 42/225 (18%)
Query: 12 SASKPPPTPSPLRFSKFFQSNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS 70
+S S R + +FQ +M +L+ G G I H++++L + + + + F
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL----FARQ 57
Query: 71 KDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
+ K ++I DV + D +Y T +
Sbjct: 58 PAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLD 102
Query: 126 IGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184
I +++ K R++ + +Y + P W N + R A
Sbjct: 103 IQANSVIAAMKACDVKRLIFVLSLGIYDEV---PGKFVEWNNAVIGE----PLKPFRRAA 155
Query: 185 TLMFDYHRQHGIE---IRIARIFN--TYGPRMNIDDGRVVSNFIA 224
D G+E +R A + + + + ++
Sbjct: 156 ----DAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVS 196
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
M+I V G G GS +V + +EV+ VV + K R +T
Sbjct: 1 MKIAVLGATGRAGSAIVAEARR-RGHEVLAVVRD---PQKAADRLGATVATLVKEPLVLT 56
Query: 92 EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
E L VD + Y ++ +++ L + + S
Sbjct: 57 EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGS 106
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-05
Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 32/174 (18%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
I + G AG I L L+ + + + I H R +I P
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64
Query: 94 LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
+E + ++ + +++ R R ++ +
Sbjct: 65 GXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVSM 108
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ + + Y +G+R A + R+ + I R
Sbjct: 109 -----AGLSGEFPVALEKWTFDNLPISYVQGERQAR----NVLRESNLNYTILR 153
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-05
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
+L+ G+GF+ ++D L N+ V V + N + + I DVT+
Sbjct: 25 NVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISLDVTDD 79
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-05
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 23/122 (18%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
M+I + G G +G L+ L + + + + + + DV
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA--------RKVEQVPQYNNVKAVHFDVDW 52
Query: 92 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
L +D I +++ +K ++ G + ++ A++ R +L
Sbjct: 53 TPEEMAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104
Query: 146 ST 147
ST
Sbjct: 105 ST 106
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
+I + G G G + + ++ EV V L G ++ DV +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQ-AGYEVTV----LVRDSSRLPS-EGPRPAHVVVGDVLQ 57
Query: 93 P-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
+ D + L N + G N++ K G +++ +
Sbjct: 58 AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 147 TSEVYGDPLVHP 158
++ + DP P
Sbjct: 111 SAFLLWDPTKVP 122
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-05
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 20 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
F N + + G +G G L+ +++E + +
Sbjct: 6 ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 49
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 58/210 (27%)
Query: 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
N R+LVTG G +G + + +N + V + + ++
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV--------------NLL 47
Query: 92 EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 136
+ + I H C A P + NV + N+ A
Sbjct: 48 DSNAVHHIIHDFQPHVIVH--CAA------ERRPDVVENQPDAASQLNVDASGNLAKEAA 99
Query: 137 RVGARILLTSTSEVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
VGA ++ S+ V+ P +D P+ + Y + K E + + +
Sbjct: 100 AVGAFLIYISSDYVFDGTNPPYR-EEDI-----PAPLNL---YGKTKLDGEKAVLENNLG 150
Query: 194 HGIEIRIARIFNTYGPRMNIDDGRVVSNFI 223
+ +RI ++ + +
Sbjct: 151 AAV-LRIPILYGEVEKLEE--------SAV 171
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 80 HPRFELIRHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGT 128
+ D+ + +I+ ++Y+LA AS + PV T + +G
Sbjct: 62 EGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS--WN--QPVTTGVVDGLGV 117
Query: 129 LNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDES 162
++L ++ R STSE++G QDE+
Sbjct: 118 THLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 153
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 38/130 (29%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
MR L+TG +G +G L L +E++EVI V ++L D+T+
Sbjct: 1 MRTLITGASGQLGIELSRLL--SERHEVIKVY----------NSSEIQGGYKL---DLTD 45
Query: 93 PLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR 137
+E D I + A A K K N +++ K
Sbjct: 46 FPRLEDFIIKKRPDVIINAA--A------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKV 97
Query: 138 VGARILLTST 147
+ + I+ ST
Sbjct: 98 IDSYIVHIST 107
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
+ R+L+ G G G HL+D+++ +VI + HPR +
Sbjct: 3 STPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR---------KALAEHPRLDNPVG 53
Query: 89 DVTE 92
+ E
Sbjct: 54 PLAE 57
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
M I++TG G +G+H+ ++ + N + +
Sbjct: 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIG 31
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.98 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.97 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.97 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.97 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.97 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.97 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.97 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.97 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.97 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.97 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.97 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.97 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.97 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.97 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.97 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.97 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.97 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.97 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.97 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.96 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.96 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.96 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.96 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.96 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.96 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.96 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.96 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.96 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.96 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.96 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.96 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.96 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.95 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.95 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.95 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.95 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.95 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.95 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.95 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.95 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.95 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.95 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.95 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.95 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.95 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.94 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.94 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.94 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.94 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.94 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.93 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.93 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.93 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.93 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.93 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.93 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.93 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.92 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.92 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.92 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.92 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.91 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.9 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.9 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.9 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.9 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.9 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.89 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.88 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.88 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.88 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.88 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.88 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.88 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.87 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.87 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.87 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.87 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.87 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.87 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.87 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.87 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.87 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.87 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.87 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.87 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.87 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.87 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.86 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.86 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.86 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.86 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.86 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.86 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.86 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.86 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.86 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.86 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.86 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.86 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.86 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.86 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.86 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.86 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.86 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.86 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.86 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.86 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.86 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.86 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.86 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.86 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.86 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.86 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.86 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.86 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.86 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.86 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.86 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.86 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.86 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.86 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.86 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.86 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.86 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.85 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.85 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.85 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.85 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.85 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.85 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.85 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.85 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.85 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.85 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.85 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.85 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.85 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.85 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.85 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.85 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.85 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.85 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.85 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.85 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.85 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.85 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.85 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.85 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.85 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.85 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.85 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.85 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.85 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.85 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.85 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.85 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.84 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.84 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.84 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.84 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.84 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.84 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.84 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.84 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.84 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.84 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.84 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.84 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.84 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.84 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.84 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.84 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.84 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.84 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.84 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.84 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.84 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.84 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.84 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.84 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.84 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.84 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.84 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.84 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.84 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.84 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.84 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.84 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.84 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.84 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.84 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.84 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.84 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.84 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.84 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.84 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.83 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.83 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.83 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.83 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.83 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.83 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.83 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.83 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.83 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.83 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.83 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.83 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.83 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.83 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.83 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.83 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.83 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.83 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.83 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.83 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.83 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.83 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.83 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.82 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.82 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.82 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.82 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.82 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.82 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.82 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.82 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.82 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.82 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.82 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.82 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.82 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.82 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.82 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.82 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.81 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.81 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.81 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.81 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.81 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.81 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.81 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.81 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.81 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.8 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.8 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.8 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.8 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.8 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.8 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.8 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.8 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.8 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.8 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.8 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.79 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.79 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.79 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.79 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.79 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.79 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.79 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.79 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.79 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.78 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.78 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.77 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.77 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.76 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.76 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.75 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.75 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.75 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.74 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.73 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.73 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.73 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.72 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.72 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.7 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.69 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.67 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.65 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.64 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.63 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.61 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.52 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.52 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.5 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.49 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.48 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.47 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.45 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.45 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.4 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.25 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.08 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.0 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.98 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.94 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.89 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.88 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.54 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.53 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.5 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.48 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.46 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.43 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.37 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.36 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.36 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.31 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.23 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.22 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.21 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 98.2 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 98.2 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.19 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.19 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.11 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.08 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.07 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.05 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.05 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 98.05 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.04 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.03 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.95 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.95 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.95 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.95 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.93 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.92 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.92 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.91 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.9 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.9 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.88 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.87 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.86 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.84 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.84 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.83 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.82 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.78 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.77 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.76 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.75 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.75 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 97.74 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.73 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.72 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.72 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.7 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.67 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.66 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.61 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.6 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 97.58 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.58 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.57 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.56 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.54 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.54 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.51 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.51 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.5 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.49 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.42 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.37 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.36 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.34 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.34 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.33 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.33 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.32 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.32 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.3 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.3 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.3 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.29 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.26 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.25 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.24 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.24 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.23 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 97.22 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 97.21 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.21 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.2 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.2 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.19 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.16 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.15 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.15 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.13 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.13 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.13 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.11 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.08 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.05 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.04 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.04 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.02 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.01 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.01 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.01 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 97.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.97 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.95 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.94 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.94 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.92 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.92 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 96.91 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.89 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.88 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.85 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.84 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.81 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.8 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.78 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.76 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.75 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.71 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.7 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.7 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.69 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.69 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.66 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.64 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.62 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 96.58 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.53 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.51 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.5 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.5 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.5 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.49 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.49 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.48 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 96.48 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.47 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.45 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.44 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.43 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.39 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.36 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.32 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.31 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.31 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.29 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.25 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.25 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.24 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.24 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.23 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.21 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.2 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.19 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.18 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.14 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.09 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.07 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.06 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.06 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.06 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.05 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.04 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.03 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.02 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.01 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.01 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.0 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.0 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.95 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.94 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 95.93 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.92 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.91 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=231.32 Aligned_cols=208 Identities=69% Similarity=1.137 Sum_probs=162.2
Q ss_pred CCCCCcchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCC
Q 027129 18 PTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE 97 (228)
Q Consensus 18 ~~~~~~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (228)
+.|...........+|+|||||||||||++++++|++.| ++|++++|...........+.....++++.+|+.+..+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 91 (343)
T 2b69_A 13 GRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIE 91 (343)
T ss_dssp --------------CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCC
T ss_pred cccccccccccccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcC
Confidence 444443333344568999999999999999999999999 9999999965444333333333457899999999988889
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHH
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
+|+|||+|+.........++...+++|+.++.++++++++.++|||++||..+|+.....+.+|+.+....+..+.+.|+
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 99999999876543344567788999999999999999998889999999999998777778887665545667778899
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.+|..+|.+++.++.+++++++++||+.+|||+.....+.+++.++.++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~ 220 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQA 220 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHH
Confidence 9999999999999888899999999999999987654345777777654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=229.64 Aligned_cols=194 Identities=32% Similarity=0.407 Sum_probs=163.0
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC------CceEEEeccCCCcc-----cC
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPL-----LI 96 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~-----~~ 96 (228)
....+|+|||||||||||++++++|++.| ++|++++|...........+... .+++++.+|+++.. +.
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 34557999999999999999999999999 99999999766554444333221 57899999999863 34
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
++|+|||+|+.........++...++.|+.++.++++++++.++ ||||+||.++|+.....+++|+ .+..|.+.
T Consensus 100 ~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 174 (351)
T 3ruf_A 100 GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSP 174 (351)
T ss_dssp TCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSH
T ss_pred CCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCCCh
Confidence 89999999997655555567778899999999999999999998 8999999999998878888888 67788899
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
|+.+|..+|++++.++.+++++++++||+.||||++.... ..+++.++..++
T Consensus 175 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~ 228 (351)
T 3ruf_A 175 YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAML 228 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999888999999999999999877542 257888877654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=223.32 Aligned_cols=205 Identities=26% Similarity=0.448 Sum_probs=151.2
Q ss_pred CCCCCCCcchhhhc--cCCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCC
Q 027129 16 PPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVT 91 (228)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~ 91 (228)
++|+...+..++.+ ..+|+|||||||||||++++++|++.| .++|++++|.... ....+.......++.++.+|++
T Consensus 6 ~~~~~~~~~~~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 85 (346)
T 4egb_A 6 HHSSGVDLGTENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85 (346)
T ss_dssp ------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTT
T ss_pred ccccccccCccccccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCC
Confidence 34444444444443 447899999999999999999999997 2677777775422 2333333334468999999999
Q ss_pred CcccC-------CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCC-CCCCCCCC
Q 027129 92 EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDES 162 (228)
Q Consensus 92 ~~~~~-------~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~-~~~~~~e~ 162 (228)
+.... ++|+|||+|+.........++...++.|+.++.++++++++.++ |||++||.++|+.. ...+++|+
T Consensus 86 d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~ 165 (346)
T 4egb_A 86 NGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE 165 (346)
T ss_dssp CHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT
T ss_pred CHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC
Confidence 86432 49999999997765555567788999999999999999999988 79999999999976 35577887
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+..|.+.|+.+|..+|++++.++.+++++++++||+.+|||++... .+++.++..++
T Consensus 166 -----~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~ 223 (346)
T 4egb_A 166 -----TPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPE--KLIPLMVTNAL 223 (346)
T ss_dssp -----SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTT--SHHHHHHHHHH
T ss_pred -----CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCcc--chHHHHHHHHH
Confidence 67788899999999999999999998899999999999999988653 47888877664
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=212.12 Aligned_cols=180 Identities=37% Similarity=0.581 Sum_probs=152.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC---CccEEEEccCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~D~vi~~a~~~~ 109 (228)
|+|||||||||||++++++|+++| ++|++++|......+.. ...+.++.+|+.+.... +.|+|||+|+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~ 74 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKGDVVFHFAANPE 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCCSEEEECCSSCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCCCEEEECCCCCC
Confidence 689999999999999999999999 99999999655433222 34688999999886521 2399999999766
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
......++...++.|+.++.++++++++.++ |||++||..+|+.....+.+|+ .+..|.+.|+.+|..+|.+++
T Consensus 75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK~~~e~~~~ 149 (312)
T 3ko8_A 75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCA 149 (312)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHH
Confidence 5556677888899999999999999999988 8999999999998877788888 677888999999999999999
Q ss_pred HHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.++.+++++++++||+.+|||++.. .+++.++.++
T Consensus 150 ~~~~~~g~~~~~lrp~~v~g~~~~~---~~~~~~~~~~ 184 (312)
T 3ko8_A 150 TYARLFGVRCLAVRYANVVGPRLRH---GVIYDFIMKL 184 (312)
T ss_dssp HHHHHHCCEEEEEEECEEECTTCCS---SHHHHHHHHH
T ss_pred HHHHHhCCCEEEEeeccccCcCCCC---ChHHHHHHHH
Confidence 9999899999999999999998764 2666666554
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=216.51 Aligned_cols=182 Identities=34% Similarity=0.506 Sum_probs=151.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC---CCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+|+|+|||||||||++++++|++.| ++|++++|... ..............++++.+|+. ++|+|||+|+..
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~~ 80 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASHK 80 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCccC
Confidence 7899999999999999999999999 99999999655 22222333333345666677765 799999999977
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHH
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM 187 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~ 187 (228)
.......++...++ |+.++.++++++++.++ |||++||..+|+.....+++|+ .+..|.+.|+.+|..+|+++
T Consensus 81 ~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~ 154 (321)
T 3vps_A 81 SVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVA 154 (321)
T ss_dssp CHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHHH
Confidence 65445566667778 99999999999999997 9999999999998877788888 67788899999999999999
Q ss_pred HHHHHHhCC-cEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 188 FDYHRQHGI-EIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 188 ~~~~~~~~i-~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+.++.++++ +++++||+.+|||++.. ..+++.++..++
T Consensus 155 ~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~ 193 (321)
T 3vps_A 155 GAHQRASVAPEVGIVRFFNVYGPGERP--DALVPRLCANLL 193 (321)
T ss_dssp HHHHHSSSSCEEEEEEECEEECTTCCT--TSHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEEEeccccCcCCCC--CChHHHHHHHHH
Confidence 999988899 99999999999998876 347777776653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=211.23 Aligned_cols=175 Identities=26% Similarity=0.370 Sum_probs=148.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
||+|+|||||||||++++++|+++| ++|++++|. ..... + .+++++.+|++ .. +.++|+|||+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~-~~~~~-~------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRS-IGNKA-I------NDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC-CC------------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCC-CCccc-C------CceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 5899999999999999999999999 999999996 22221 1 16888999998 52 348999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
..... ++...++.|+.++.++++++++.++ |||++||..+|+.....+++|+ .+..|.+.|+.+|..+|+
T Consensus 72 ~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~ 142 (311)
T 3m2p_A 72 TRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMYGVSKLACEH 142 (311)
T ss_dssp CCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred cCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchhHHHHHHHHH
Confidence 75543 6678889999999999999999998 7999999999998877888888 678888999999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+++.++.+++++++++||+.+||++.... .+++.++..++
T Consensus 143 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~ 182 (311)
T 3m2p_A 143 IGNIYSRKKGLCIKNLRFAHLYGFNEKNN--YMINRFFRQAF 182 (311)
T ss_dssp HHHHHHHHSCCEEEEEEECEEECSCC--C--CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeeCceeCcCCCCC--CHHHHHHHHHH
Confidence 99999988899999999999999988763 47888877654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=221.07 Aligned_cols=191 Identities=26% Similarity=0.442 Sum_probs=154.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-Cccc-----CCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPLL-----IEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-----~~~D~vi~ 103 (228)
.||+|+|||||||||++++++|+++ | ++|++++|...... .+....+++++.+|++ +... .++|+|||
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~----~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDRLG----DLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTTTG----GGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhhhh----hhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 3789999999999999999999998 8 99999999544332 2223358999999999 6532 37999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCC-CCCCC-CCCChHHHhHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPI-GVRSCYDEGKR 181 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~-~~~~~-~~~~~y~~sK~ 181 (228)
+|+...+.....++...+++|+.++.++++++++.+.||||+||.++|+.....++.|+... ...+. .|.+.|+.+|.
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~ 177 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQ 177 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHHH
Confidence 99977655555677788999999999999999998888999999999998777777776321 01111 46678999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCC------CCccHHHHHHHHHh
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNI------DDGRVVSNFIAQAI 227 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~------~~~~~~~~~i~~~~ 227 (228)
.+|++++.++.+ +++++++||+.+|||++.. ....+++.++..++
T Consensus 178 ~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
T 3slg_A 178 LMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIV 228 (372)
T ss_dssp HHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHH
Confidence 999999999888 9999999999999998763 12457788777653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=210.02 Aligned_cols=180 Identities=33% Similarity=0.511 Sum_probs=146.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----CCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----IEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~D~vi~~a~~ 107 (228)
||+||||||+||||++++++|+++| +.|. +.+......+.. ...+.++.+|+++... .++|+|||+|+.
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~-~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~ 73 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVV-IDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAAN 73 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEE-ECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEE-EEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCC
Confidence 6899999999999999999999999 5554 444333222221 2468899999988322 379999999997
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
........++...+++|+.++.++++++++.++ +||++||..+|+.....+.+|+ .+..+.+.|+.+|..+|.+
T Consensus 74 ~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~~ 148 (313)
T 3ehe_A 74 PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASKLACEAL 148 (313)
T ss_dssp CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHH
T ss_pred CChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 655555677888999999999999999999887 8999999999998877788887 5777888999999999999
Q ss_pred HHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
++.++.+++++++++||+.||||++.. .+++.++.++
T Consensus 149 ~~~~~~~~g~~~~ilRp~~v~G~~~~~---~~~~~~~~~~ 185 (313)
T 3ehe_A 149 IESYCHTFDMQAWIYRFANVIGRRSTH---GVIYDFIMKL 185 (313)
T ss_dssp HHHHHHHTTCEEEEEECSCEESTTCCC---SHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeeccccCcCCCc---ChHHHHHHHH
Confidence 999999999999999999999998764 3677766654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=213.14 Aligned_cols=186 Identities=30% Similarity=0.419 Sum_probs=149.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
||+|+||||+||||++++++|++. | ++|++++|.... ..+....+ ...++.++.+|+++.. +.++|+|||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCChhHHhhh-ccCCeEEEECCCCCHHHHHHHhhcCCEEEE
Confidence 789999999999999999999999 7 999999996432 22222222 2257899999999863 347899999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCC------------CCCCCCCCCCCCCCC
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV------------HPQDESYWGNVNPIG 171 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~------------~~~~e~~~~~~~~~~ 171 (228)
+||.........+++..+++|+.++.++++++.+.++|||++||..+|+.... .+++|+ .+..
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~ 156 (348)
T 1oc2_A 82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYN 156 (348)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCC
T ss_pred CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCC
Confidence 99875433334566788999999999999999998889999999999986532 456666 5667
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+.+.|+.+|..+|.+++.++.+++++++++||+.+||++... ..+++.++..+
T Consensus 157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~--~~~~~~~~~~~ 209 (348)
T 1oc2_A 157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI--EKFIPRQITNI 209 (348)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT--TSHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc--cchHHHHHHHH
Confidence 778999999999999999998889999999999999998764 23666666554
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=214.89 Aligned_cols=191 Identities=28% Similarity=0.348 Sum_probs=154.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---C---CCceEEEeccCCCcc-----cCCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G---HPRFELIRHDVTEPL-----LIEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~---~~~~~~~~~d~~~~~-----~~~~ 98 (228)
..||+|+|||||||||++++++|++.| ++|++++|......+....+. . ..++.++.+|+++.. +.++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 458999999999999999999999999 999999996544333222211 0 146889999998863 3489
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHH
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
|+|||+||.........++...+++|+.++.++++++++.++ |||++||..+|+.....+.+|+ .+..+.+.|+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-----~~~~~~~~Y~ 178 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYA 178 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHH
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCC-----CCCCCCChhH
Confidence 999999986543333356678889999999999999999887 8999999999998766778887 5667788999
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHH
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQA 226 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~ 226 (228)
.+|..+|.+++.++.+++++++++||+.+|||+.... ...+++.++..+
T Consensus 179 ~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~ 229 (352)
T 1sb8_A 179 VTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSM 229 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHH
Confidence 9999999999999888899999999999999987653 124677666654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=210.21 Aligned_cols=181 Identities=32% Similarity=0.398 Sum_probs=148.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQI 101 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~v 101 (228)
.+++|+||||||+||||++++++|+++| ++|++++|.... .. + ++.++.+|+++.... ++|+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~~----l----~~~~~~~Dl~d~~~~~~~~~~~~~d~v 78 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA-KL----P----NVEMISLDIMDSQRVKKVISDIKPDYI 78 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC-CC----T----TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc-cc----c----eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 3558999999999999999999999999 999999996543 11 1 688899999986421 48999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceeccCC--CCCCCCCCCCCCCCCCCCCChHH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP--LVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y~~~--~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
||+||.........++...+++|+.++.++++++++. +. |||++||..+|+.. ...+++|+ .+..+.+.|+
T Consensus 79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y~ 153 (321)
T 2pk3_A 79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYG 153 (321)
T ss_dssp EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHHH
T ss_pred EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCccH
Confidence 9999976544445677889999999999999999876 45 99999999999876 56677887 5677788999
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.+|..+|.+++.++.+++++++++||+.+|||+.... .+++.++..+
T Consensus 154 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~--~~~~~~~~~~ 200 (321)
T 2pk3_A 154 VSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG--FVTQDFAKQI 200 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC--chHHHHHHHH
Confidence 9999999999999888899999999999999987752 3666666543
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=210.09 Aligned_cols=189 Identities=32% Similarity=0.482 Sum_probs=151.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCccc-----CCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~ 104 (228)
+|+||||||+||||++++++|++.| .++|++++|.... ..+.+..+....++.++.+|+++... .++|+|||+
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL 82 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence 5899999999999999999999985 2899999985422 22333322223578999999998642 379999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
||.........++...+++|+.++.++++++.+.+. |||++||..+|+.....+++|+ .+..+.+.|+.+|..
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~ 157 (336)
T 2hun_A 83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAA 157 (336)
T ss_dssp CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHHHHHHHH
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCccHHHHHH
Confidence 987543333356678899999999999999998764 8999999999997766677777 566777899999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+|.+++.++.+++++++++||+.+||++... ..+++.++..++
T Consensus 158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~ 200 (336)
T 2hun_A 158 SDMLVLGWTRTYNLNASITRCTNNYGPYQFP--EKLIPKTIIRAS 200 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECEEESTTCCT--TSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc--CchHHHHHHHHH
Confidence 9999999998889999999999999998754 346777766553
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=208.50 Aligned_cols=189 Identities=23% Similarity=0.256 Sum_probs=150.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcCCCceEEEeccCCCcccC-------CccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~ 103 (228)
+|+||||||+||||++++++|++.| ++|++++|...... .....+.....+.++.+|+++.... ++|+|||
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 8999999999999999999999999 99999999654422 1222221234688999999886421 4799999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
+||.........++...+++|+.++.++++++++.++ +||++||.++|+.....+++|+ .+..|.+.|+.+|.
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKL 167 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChhHHHHH
Confidence 9997554334566778899999999999999999873 8999999999998766678887 57777889999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-ccHHHHHHHHH
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQA 226 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-~~~~~~~i~~~ 226 (228)
.+|.+++.++.+++++++++||+.+|||+..... ...+..++.++
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~ 213 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARI 213 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHH
Confidence 9999999999888999999999999999865421 22355555443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=208.91 Aligned_cols=175 Identities=25% Similarity=0.396 Sum_probs=147.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc-------CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~-------~~~D~v 101 (228)
.+|+|+||||+||||++++++|+++| ++|++++|......+....+. ....+.++.+|+++... .++|+|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 46899999999999999999999999 999999996655443332221 12468899999998642 279999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
||+||.........++...++.|+.++.++++++++.++ +||++||..+|+.....+++|+ .+..+.+.|+.+|
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y~~sK 157 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPYGQTK 157 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHHHHHH
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChhHHHH
Confidence 999997655444566678899999999999999999987 8999999999998877788888 6777888999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEeeeccccCCCC
Q 027129 181 RVAETLMFDYHRQHG-IEIRIARIFNTYGPRM 211 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~-i~~~ilRp~~i~G~~~ 211 (228)
..+|.+++.++.+++ ++++++||+.+|||+.
T Consensus 158 ~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~ 189 (341)
T 3enk_A 158 LMAEQILRDVEAADPSWRVATLRYFNPVGAHE 189 (341)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHHhhcCCCceEEEEeeccccCCcc
Confidence 999999999988875 9999999999999965
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=206.04 Aligned_cols=188 Identities=34% Similarity=0.513 Sum_probs=151.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-C-C---CeEEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCcc-----cCCccEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-E-K---NEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI 101 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g-~---~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~v 101 (228)
|+|+||||+||||++++++|+++ + . ++|++++|.... ..+.+..+....++.++.+|+++.. +.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 68999999999999999999996 3 2 799999985432 2233333322357899999999863 3589999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
||+||.........+++..+++|+.++.++++++.+.++ |||++||..+|+.....+++|+ .+..+.+.|+.+|
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999986543333356678899999999999999999987 9999999999987666677777 5667788999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
..+|.+++.++.+++++++++||+.+|||++.. ..+++.++..++
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~ 200 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLL 200 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC--CChHHHHHHHHh
Confidence 999999999998889999999999999998764 346777776553
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=208.03 Aligned_cols=184 Identities=26% Similarity=0.411 Sum_probs=149.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~ 104 (228)
||+|+||||+||||++++++|++.| ++|++++|......+.+ . .+++++.+|+++... . ++|+|||+
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~ 74 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHF 74 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 6899999999999999999999999 99999998544332211 1 267889999988632 2 79999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
|+.........+++..+++|+.++.++++++++.++ |||++||..+|+.....+++|+ .+..+.+.|+.+|..+
T Consensus 75 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTYGETKLAI 149 (330)
T ss_dssp CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHHHHHHHHH
T ss_pred CcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChHHHHHHHH
Confidence 986543333356678889999999999999999887 8999999999998766778887 5667788999999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCC-------CCccHHHHHHHHH
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNI-------DDGRVVSNFIAQA 226 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~-------~~~~~~~~~i~~~ 226 (228)
|.+++.++.+++++++++||+.+||++... ....+++.++..+
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~ 199 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVA 199 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHH
Confidence 999999988889999999999999997421 1134777766543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=210.16 Aligned_cols=190 Identities=20% Similarity=0.215 Sum_probs=150.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~ 103 (228)
.+|+|+||||+||||++++++|++.| ++|++++|................++.++.+|+++... . ++|+|||
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 47899999999999999999999999 99999999655433222221123468899999998642 1 4899999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCChHHHhH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
+||.........++...+++|+.++.++++++.+.+ + |||++||..+|+.... .+.+|+ .+..+.+.|+.+|
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~sK 161 (357)
T 1rkx_A 87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSK 161 (357)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHH
T ss_pred CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHHH
Confidence 998644333345667889999999999999999876 5 8999999999987643 356665 4666778999999
Q ss_pred HHHHHHHHHHHHHh---------CCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 181 RVAETLMFDYHRQH---------GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 181 ~~~e~~~~~~~~~~---------~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
..+|++++.++.++ +++++++||+.+|||++... ..+++.++..+.
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~-~~~~~~~~~~~~ 216 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFE 216 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc-ccHHHHHHHHHh
Confidence 99999999998765 99999999999999986432 458888887654
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=208.74 Aligned_cols=186 Identities=26% Similarity=0.402 Sum_probs=151.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHh--cCCCeEEEEcCCCCCCc---------hhhhhhcCCCceEEEeccCCCcc----
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSK---------DNLRKWIGHPRFELIRHDVTEPL---- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~--~g~~~V~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~---- 94 (228)
..+|+||||||+||||++++++|++ .| ++|++++|...... .... ......+.++.+|+++..
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFK-NLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGG-GGTTCCSEEEECCTTCHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhh-hccccCceEEECCCCCHHHHHH
Confidence 3478999999999999999999999 89 99999999654110 1111 112346789999999853
Q ss_pred --cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 95 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 95 --~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
..++|+|||+||... ....+++..+++|+.++.++++++++.+++||++||.++|+.... +.+|+ .+..|
T Consensus 86 ~~~~~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred hhccCCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence 458999999999543 245677889999999999999999999889999999999997765 78887 67788
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
.+.|+.+|..+|.+++.++.+ ++++++||+++|||++.... ..+++.++..++
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~ 212 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAM 212 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHH
Confidence 899999999999999998765 89999999999999987532 257888877654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=207.95 Aligned_cols=194 Identities=29% Similarity=0.413 Sum_probs=146.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcCCCceEEEeccCCCccc-----CC--ccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-----IE--VDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~-----~~--~D~vi~ 103 (228)
||+|||||||||||++++++|++.| ++|++++|...... .....+....++.++.+|+++... .+ +|+|||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence 6899999999999999999999999 99999998532222 222222223468899999998642 24 999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCC-----------CCCCCCC
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESY-----------WGNVNPI 170 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~-----------~~~~~~~ 170 (228)
+||.........++...+++|+.++.++++++++.++ |||++||..+|+.....+..|++ .....+.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~ 159 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 159 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCC
Confidence 9986543333456778899999999999999998875 79999999999865443322210 1111455
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC-CccHHHHHHHHH
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQA 226 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-~~~~~~~~i~~~ 226 (228)
.+.+.|+.+|..+|.+++.++.+++++++++||+.|||++.... ...+++.++.++
T Consensus 160 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~ 216 (347)
T 1orr_A 160 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKA 216 (347)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHH
Confidence 67789999999999999999988899999999999999986542 133666666544
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=205.62 Aligned_cols=183 Identities=33% Similarity=0.507 Sum_probs=147.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~a 105 (228)
|+|+||||+||||++++++|+++| ++|++++|......+.. ...+.++.+|+++... . ++|+|||+|
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 74 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQA 74 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCGGGS-----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCchhhc-----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECc
Confidence 689999999999999999999999 99999988433222211 1357788999988632 2 699999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc-eeccC-CCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~-~~y~~-~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
+.........++...+++|+.++.++++++++.++ |||++||. .+|+. ....+.+|+ .+..+.+.|+.+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 75 AQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPYAASKAA 149 (311)
T ss_dssp SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHHHHHHHH
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChHHHHHHH
Confidence 86543333456678899999999999999999887 99999999 89986 444567776 566677899999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-ccHHHHHHHHH
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQA 226 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-~~~~~~~i~~~ 226 (228)
+|.+++.++.+++++++++||+.+|||++.... ..+++.+++++
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~ 194 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERV 194 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHH
Confidence 999999998888999999999999999876532 34677776654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=210.84 Aligned_cols=179 Identities=26% Similarity=0.326 Sum_probs=146.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
..+|+|||||||||||++++++|++.| ++|++++|.... ..+.++.+|+++.. +.++|+|||+
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 84 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHL 84 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence 447899999999999999999999999 999999995433 36788899998864 3489999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccC--CCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD--PLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~--~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
|+...... ......+++|+.++.++++++++.++ |||++||.++|+. ....+++|+ .+..+.+.|+.+|.
T Consensus 85 A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y~~sK~ 157 (347)
T 4id9_A 85 GAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPYGLTKL 157 (347)
T ss_dssp CCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChHHHHHH
Confidence 98654322 22378889999999999999999988 8999999999997 456677887 67778899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeecccc-------------CCCCCCC---------CccHHHHHHHHHh
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTY-------------GPRMNID---------DGRVVSNFIAQAI 227 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~-------------G~~~~~~---------~~~~~~~~i~~~~ 227 (228)
.+|++++.++.+++++++++||+.+| ||++... ...+++.++..+.
T Consensus 158 ~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (347)
T 4id9_A 158 LGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRD 225 (347)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHH
Confidence 99999999998889999999999999 8765431 1346777776543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=209.00 Aligned_cols=193 Identities=27% Similarity=0.381 Sum_probs=143.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
..||+|+||||+||||++++++|++.|.++|++++|......+.+. ...+++++.+|+++.. +.++|+|||+
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~ 106 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHL 106 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEEC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEEC
Confidence 3478999999999999999999999876899999996544322221 2357899999999853 3489999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceeccCCCCCCCC--CCCCCCCCCC-CCCChHHHh
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPLVHPQD--ESYWGNVNPI-GVRSCYDEG 179 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y~~~~~~~~~--e~~~~~~~~~-~~~~~y~~s 179 (228)
|+.........++...+++|+.++.++++++++. ++ |||++||..+|+.....+++ |+.+. .+. .+.+.|+.+
T Consensus 107 A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~s 184 (377)
T 2q1s_A 107 ATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSMS 184 (377)
T ss_dssp CCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHHH
T ss_pred CCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHHH
Confidence 9875543334566788999999999999999998 77 89999999999977665677 76321 144 667889999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCCC---------CCCC--ccHHHHHHHHHh
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRM---------NIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~---------~~~~--~~~~~~~i~~~~ 227 (228)
|..+|.+++.++.+++++++++||+.|||++. .... ..+++.++..++
T Consensus 185 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
T 2q1s_A 185 KIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKAL 243 (377)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHH
Confidence 99999999999888899999999999999987 3210 247777776653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=205.46 Aligned_cols=189 Identities=28% Similarity=0.488 Sum_probs=147.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
|+|+|||||||||++++++|++. | ++|++++|... ....+....+++++.+|+++.. +.++|+|||+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A 75 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSD----AISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV 75 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCG----GGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcc----hHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence 68999999999999999999998 8 99999999533 2222233457899999998732 12699999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCC-CCC-CCCCChHHHhHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNP-IGVRSCYDEGKRVA 183 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~-~~~-~~~~~~y~~sK~~~ 183 (228)
|...+.....++...+++|+.++.++++++++.+.|||++||.++|+.....+++|+.+.. ..+ ..+.+.|+.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~ 155 (345)
T 2bll_A 76 AIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLL 155 (345)
T ss_dssp CCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHH
T ss_pred cccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHH
Confidence 8765433345667788999999999999999888799999999999977666777764321 011 13456899999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCCC------CccHHHHHHHHH
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQA 226 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~------~~~~~~~~i~~~ 226 (228)
|++++.++.+++++++++||+.+|||++... ...+++.++.++
T Consensus 156 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 204 (345)
T 2bll_A 156 DRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNL 204 (345)
T ss_dssp HHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHH
Confidence 9999999888899999999999999987531 134666666654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=206.33 Aligned_cols=187 Identities=26% Similarity=0.329 Sum_probs=148.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
.||+|+||||+||||++++++|+++| ++|++++|........ ...+++++.+|+++.. +.++|+|||+|
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 47899999999999999999999999 9999999965433211 1236788999998853 34899999999
Q ss_pred CCCCcccc-cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC-----CCCCCCCCCCCCCCCCCChHHH
Q 027129 106 CPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-----HPQDESYWGNVNPIGVRSCYDE 178 (228)
Q Consensus 106 ~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~-----~~~~e~~~~~~~~~~~~~~y~~ 178 (228)
+....... ..++...+++|+.++.++++++++.++ |||++||..+|+.... .+++|+.+ .+..+.+.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~---~~~~~~~~Y~~ 178 (379)
T 2c5a_A 102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFGL 178 (379)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG---SSBCCSSHHHH
T ss_pred eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccC---CCCCCCChhHH
Confidence 86543222 456778899999999999999999887 9999999999986432 23555521 14556778999
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCc--cHHHHHHHHH
Q 027129 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG--RVVSNFIAQA 226 (228)
Q Consensus 179 sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~--~~~~~~i~~~ 226 (228)
+|..+|.+++.++.+++++++++||+.+||+++....+ .+++.++.++
T Consensus 179 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~ 228 (379)
T 2c5a_A 179 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKA 228 (379)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHH
Confidence 99999999999988889999999999999998765322 3677777654
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=203.55 Aligned_cols=186 Identities=28% Similarity=0.439 Sum_probs=147.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCC-CCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~ 103 (228)
|+||||||+||||++++++|++. | ++|++++|... ...+.+..+....++.++.+|+++... . ++|+|||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence 68999999999999999999998 7 99999998542 222333332223578999999998632 2 7999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc--CC--------eEEEEccceeccCCCC--C--------CCCCCC
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA--------RILLTSTSEVYGDPLV--H--------PQDESY 163 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~--------r~i~~Ss~~~y~~~~~--~--------~~~e~~ 163 (228)
+||.........+++..+++|+.++.++++++.+. ++ |||++||..+|+.... . +++|+
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~- 158 (361)
T 1kew_A 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET- 158 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT-
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC-
Confidence 99975533334566788999999999999999887 63 8999999999986532 1 56666
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.+..+.+.|+.+|..+|.+++.++.+++++++++||+.|||++... ..+++.++.++
T Consensus 159 ----~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~ 215 (361)
T 1kew_A 159 ----TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNA 215 (361)
T ss_dssp ----SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHH
T ss_pred ----CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCc--ccHHHHHHHHH
Confidence 5667778999999999999999998889999999999999998754 34667666654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=206.82 Aligned_cols=186 Identities=27% Similarity=0.419 Sum_probs=147.5
Q ss_pred CCEEEEecCcchhHHHHHHHHH-hcCCCeEEEEcCCCCCC--------chhhh----hhcC---CCc---eEEEeccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGS--------KDNLR----KWIG---HPR---FELIRHDVTE 92 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~--------~~~~~----~~~~---~~~---~~~~~~d~~~ 92 (228)
+|+||||||+||||++++++|+ +.| ++|++++|..... .+.+. .... ... +.++.+|+++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 5799999999999999999999 999 9999999864432 22221 1111 123 8899999998
Q ss_pred ccc-----C--C-ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC-------C
Q 027129 93 PLL-----I--E-VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-------V 156 (228)
Q Consensus 93 ~~~-----~--~-~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~-------~ 156 (228)
... . + +|+|||+|+.........++...+++|+.++.++++++++.++ +||++||.++|+... .
T Consensus 81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence 632 2 4 9999999987653333456678899999999999999999887 899999999998765 4
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC-------CCccHHHHHH
Q 027129 157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI-------DDGRVVSNFI 223 (228)
Q Consensus 157 ~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~-------~~~~~~~~~i 223 (228)
.+++|+ .+..+.+.|+.+|..+|.+++.++.+++++++++||+.+||++... ....+++.++
T Consensus 161 ~~~~E~-----~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~ 229 (397)
T 1gy8_A 161 EPIDIN-----AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIIL 229 (397)
T ss_dssp CCBCTT-----SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHH
T ss_pred cCcCcc-----CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHH
Confidence 567777 5667788999999999999999998889999999999999997531 1245777666
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=201.06 Aligned_cols=188 Identities=26% Similarity=0.405 Sum_probs=147.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC------Cchhhhhhc--CCCceEEEeccCCCccc-----C--
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------SKDNLRKWI--GHPRFELIRHDVTEPLL-----I-- 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------~~~~~~~~~--~~~~~~~~~~d~~~~~~-----~-- 96 (228)
+|+|+||||+||||++++++|++.| ++|++++|.... ..+....+. ...++.++.+|+++... .
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999 999999885433 222222221 12467899999998632 2
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CC
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RS 174 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~ 174 (228)
++|+|||+||.........++...+++|+.++.++++++++.++ +||++||..+|+.....+++|+ .+..| .+
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~-----~~~~p~~~ 155 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA-----HPTGGCTN 155 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSS
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCC-----CCCCCCCC
Confidence 79999999986543333456678899999999999999999887 8999999999998767778887 45556 68
Q ss_pred hHHHhHHHHHHHHHHHHHHhC--CcEEEeeeccccCCCC------CCC--CccHHHHHHHHH
Q 027129 175 CYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRM------NID--DGRVVSNFIAQA 226 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~--i~~~ilRp~~i~G~~~------~~~--~~~~~~~~i~~~ 226 (228)
.|+.+|..+|.+++.++.+ + ++++++||+.+|||+. ... ...+++.++..+
T Consensus 156 ~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~ 216 (348)
T 1ek6_A 156 PYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVA 216 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHH
Confidence 8999999999999999877 5 9999999999999953 111 134677666544
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=199.50 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=131.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
.+|+|+||||+||||++++++|++.| ++|++++|...+.. .+. ..+++++.+|+++.. +.++|+|||+|
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~l~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a 85 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQ-RLA----YLEPECRVAEMLDHAGLERALRGLDGVIFSA 85 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGG-GGG----GGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhh-hhc----cCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 35799999999999999999999999 99999999644322 111 136788999998853 34899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC--CCCCCCCCCCCCCCCC----CChHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--HPQDESYWGNVNPIGV----RSCYDE 178 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~--~~~~e~~~~~~~~~~~----~~~y~~ 178 (228)
+... ....++...+++|+.++.++++++++.++ |||++||..+|+.... .+ +|+ .+..| .+.|+.
T Consensus 86 ~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y~~ 157 (342)
T 2x4g_A 86 GYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSYVL 157 (342)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHHHH
T ss_pred ccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChHHH
Confidence 8643 22355678889999999999999999887 9999999999986544 33 666 56666 789999
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeeeccccCCCC
Q 027129 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 179 sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
+|..+|.+++.++.. +++++++||+.+||++.
T Consensus 158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCC
T ss_pred HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCC
Confidence 999999999999877 99999999999999987
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=201.87 Aligned_cols=178 Identities=25% Similarity=0.333 Sum_probs=140.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi 102 (228)
..||+|||||||||||++++++|++.| + +. ... ...++.+.+|+++... .++|+||
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~------~~--~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vi 66 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGA-G------LP--GED--------WVFVSSKDADLTDTAQTRALFEKVQPTHVI 66 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTT-C------CT--TCE--------EEECCTTTCCTTSHHHHHHHHHHSCCSEEE
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcC-C------cc--ccc--------ccccCceecccCCHHHHHHHHhhcCCCEEE
Confidence 458999999999999999999999999 6 10 000 0134445678877532 2499999
Q ss_pred EccCCCCc-ccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC-hHHHh
Q 027129 103 HLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEG 179 (228)
Q Consensus 103 ~~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~-~y~~s 179 (228)
|+|+.... .....++...++.|+.++.++++++++.++ ||||+||..+|+.....+++|+.+.. .+..|.. .|+.+
T Consensus 67 h~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~s 145 (319)
T 4b8w_A 67 HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHN-GPPHNSNFGYSYA 145 (319)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGB-SCCCSSSHHHHHH
T ss_pred ECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCcccccccc-CCCCCCcchHHHH
Confidence 99997542 233466778899999999999999999998 89999999999988878888874221 1444545 59999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHH
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQ 225 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~ 225 (228)
|..+|++++.++++++++++++||+.+|||++... .+.+++.++.+
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~ 193 (319)
T 4b8w_A 146 KRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHK 193 (319)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHH
Confidence 99999999999998999999999999999998653 24588888776
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=198.29 Aligned_cols=177 Identities=27% Similarity=0.284 Sum_probs=145.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcCCCceEEEeccCCCcccC-------CccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi 102 (228)
++|+|+||||+||||++++++|+++| ++|++++|...... ..+.......++.++.+|+++.... ++|+||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 80 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY 80 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 36899999999999999999999999 99999999654432 1222222234688999999886321 479999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
|+||.........++...+++|+.++.++++++.+.++ +||++||..+||.....+++|+ .+..+.+.|+.+|
T Consensus 81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~sK 155 (345)
T 2z1m_A 81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAK 155 (345)
T ss_dssp ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHHH
Confidence 99997654333566778899999999999999998873 8999999999998777777777 5667778999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
..+|.+++.++.+++++++++|+.++|||+...
T Consensus 156 ~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~ 188 (345)
T 2z1m_A 156 LFGHWITVNYREAYNMFACSGILFNHESPLRGI 188 (345)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCT
T ss_pred HHHHHHHHHHHHHhCCceEeeeeeeecCCCCCC
Confidence 999999999998889999999999999998654
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=202.06 Aligned_cols=175 Identities=25% Similarity=0.271 Sum_probs=142.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhc------CCCceEEEeccCCCcccC-------Cc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI------GHPRFELIRHDVTEPLLI-------EV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~------~~~~~~~~~~d~~~~~~~-------~~ 98 (228)
|+|+||||+||||++++++|++.| ++|++++|..... .+....+. ....+.++.+|+++.... ++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 103 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 103 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence 799999999999999999999999 9999999965432 11122211 124688899999886421 47
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
|+|||+||.........++...+++|+.++.++++++++.++ +||++||..+|+.....+++|+ .+..+.+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~ 178 (375)
T 1t2a_A 104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 178 (375)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCC
Confidence 999999997543333456678889999999999999998874 8999999999997766678887 5667778
Q ss_pred hHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.|+.+|..+|.+++.++.+++++++++||+.+|||+...
T Consensus 179 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~ 217 (375)
T 1t2a_A 179 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGA 217 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCC
Confidence 999999999999999998889999999999999998654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=197.48 Aligned_cols=162 Identities=23% Similarity=0.217 Sum_probs=136.4
Q ss_pred CC-EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEE
Q 027129 32 NM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYH 103 (228)
Q Consensus 32 ~~-~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~ 103 (228)
|+ +|+|||||||||++++++|+++| ++|++++|. ++|+++... . ++|+|||
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------~~D~~d~~~~~~~~~~~~~d~vi~ 62 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEE-YDIYPFDKK--------------------LLDITNISQVQQVVQEIRPHIIIH 62 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT--------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc--------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence 44 99999999999999999999999 999999992 144444321 1 6999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
+|+.........++...++.|+.++.++++++++.++|||++||..+|+.....+++|+ ++..|.+.|+.+|..+
T Consensus 63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 137 (287)
T 3sc6_A 63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIYGASKYAG 137 (287)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHHHHHHHHH
Confidence 99987655555778889999999999999999999889999999999998877888888 6778889999999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
|++++.+. .+++++||+.+|||+... +++.++..+.
T Consensus 138 E~~~~~~~----~~~~ilR~~~v~G~~~~~----~~~~~~~~~~ 173 (287)
T 3sc6_A 138 EQFVKELH----NKYFIVRTSWLYGKYGNN----FVKTMIRLGK 173 (287)
T ss_dssp HHHHHHHC----SSEEEEEECSEECSSSCC----HHHHHHHHHT
T ss_pred HHHHHHhC----CCcEEEeeeeecCCCCCc----HHHHHHHHHH
Confidence 99998764 478999999999997543 7777776553
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=198.10 Aligned_cols=189 Identities=26% Similarity=0.328 Sum_probs=145.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC-----CCceEEEeccCCCcccC-------Cc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-----HPRFELIRHDVTEPLLI-------EV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-----~~~~~~~~~d~~~~~~~-------~~ 98 (228)
||+|+||||+||||++++++|+++| ++|++++|..... .+.+..+.. ..++.++.+|+++.... ++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999999999 9999999964431 111221111 24688899999886321 47
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
|+|||+||.........++...+++|+.++.++++++++.++ +||++||..+|+.....+.+|+ .+..+.+
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~ 154 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRS 154 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCS
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCC
Confidence 999999997654444566677889999999999999998874 8999999999997766677887 5667788
Q ss_pred hHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-ccHHHHHHHHH
Q 027129 175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQA 226 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-~~~~~~~i~~~ 226 (228)
.|+.+|..+|.+++.++.+++++++++|+.++|||+..... ...++.++.++
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~ 207 (372)
T 1db3_A 155 PYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANI 207 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHH
Confidence 99999999999999999888999999999999999865421 23445555443
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=196.60 Aligned_cols=172 Identities=30% Similarity=0.484 Sum_probs=136.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|+|+||||+||||++++++|+++| ++|++++|......+....+. ....+.++.+|+++... .++|+|||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih 79 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence 689999999999999999999999 999999874433222222111 12357888999998632 15999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHHhHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKR 181 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~sK~ 181 (228)
+||.........++...+++|+.++.++++++++.++ +||++||..+|+.....+++|+ .+..+ .+.|+.+|.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~~Y~~sK~ 154 (338)
T 1udb_A 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVES-----FPTGTPQSPYGKSKL 154 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTT-----SCCCCCSSHHHHHHH
T ss_pred CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcc-----cCCCCCCChHHHHHH
Confidence 9986543323345667889999999999999998887 8999999999987666677776 34433 678999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEeeeccccCCC
Q 027129 182 VAETLMFDYHRQH-GIEIRIARIFNTYGPR 210 (228)
Q Consensus 182 ~~e~~~~~~~~~~-~i~~~ilRp~~i~G~~ 210 (228)
.+|.+++.++.++ +++++++||+++||+.
T Consensus 155 ~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~ 184 (338)
T 1udb_A 155 MVEQILTDLQKAQPDWSIALLRYFNPVGAH 184 (338)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred HHHHHHHHHHHhcCCCceEEEeeceecCCC
Confidence 9999999998776 7999999999999984
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=195.97 Aligned_cols=193 Identities=23% Similarity=0.239 Sum_probs=144.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEE-eccCCCccc-----CCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELI-RHDVTEPLL-----IEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~-~~d~~~~~~-----~~~D~ 100 (228)
.++|+||||||+||||++++++|++.| ++|++++|+..+. +.+.... ...++.++ .+|+++... .++|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccH-HHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 447899999999999999999999999 9999999943211 1111111 11468888 799987542 37999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHH-cCC-eEEEEccceeccCCCC----CCCCCCCCCC--------
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA-RILLTSTSEVYGDPLV----HPQDESYWGN-------- 166 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~-r~i~~Ss~~~y~~~~~----~~~~e~~~~~-------- 166 (228)
|||+|+.... ..++...++.|+.++.++++++.+ .++ |||++||..+|+.... .+++|+.+..
T Consensus 87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence 9999986543 246678899999999999999985 555 8999999999864321 4567764311
Q ss_pred ---CCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCCCCCCCc-cHHHHHHHHHh
Q 027129 167 ---VNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDG-RVVSNFIAQAI 227 (228)
Q Consensus 167 ---~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~~~~~~~-~~~~~~i~~~~ 227 (228)
..+..+.+.|+.+|..+|.+++.++.++ +++++++||+.+||+....... ..++.++.+++
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~ 230 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLF 230 (342)
T ss_dssp SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHH
Confidence 0133456789999999999999998876 7899999999999998765322 26777776553
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=191.39 Aligned_cols=164 Identities=23% Similarity=0.275 Sum_probs=139.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
+||+|+||||+|+||++++++|++.| ++|++++|...+.. ...+.++.+|+++.. ..++|+|||+|
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A 72 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLG 72 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence 36899999999999999999999999 99999999644332 247899999999864 34899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCC-CCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~-~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
|.. ...+++..+++|+.++.++++++++.+. |||++||..+|+.. ...+++|+ .+..+.+.|+.+|...
T Consensus 73 g~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~~~ 143 (267)
T 3rft_A 73 GIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSKCFG 143 (267)
T ss_dssp SCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred CCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHH
Confidence 863 3456678899999999999999999887 99999999999743 34466676 6777888999999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
|.+++.++.+++++++++||+.|||+..+
T Consensus 144 e~~~~~~a~~~g~~~~~vr~~~v~~~~~~ 172 (267)
T 3rft_A 144 ENLARMYFDKFGQETALVRIGSCTPEPNN 172 (267)
T ss_dssp HHHHHHHHHHHCCCEEEEEECBCSSSCCS
T ss_pred HHHHHHHHHHhCCeEEEEEeecccCCCCC
Confidence 99999999889999999999999997544
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=205.02 Aligned_cols=196 Identities=26% Similarity=0.324 Sum_probs=144.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------hhhhhh--cCCCceEEEeccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKW--IGHPRFELIRHDVT 91 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~d~~ 91 (228)
..|++||||||+||||++++++|++.| ++|++++|...... +..... .....+.++.+|++
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 448999999999999999999999999 99999988422110 011110 11246889999999
Q ss_pred Cccc-----C--CccEEEEccCCCCcccccCCch---hhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCC
Q 027129 92 EPLL-----I--EVDQIYHLACPASPIFYKYNPV---KTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQ 159 (228)
Q Consensus 92 ~~~~-----~--~~D~vi~~a~~~~~~~~~~~~~---~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~ 159 (228)
+... . ++|+|||+||.........+++ ..+++|+.++.++++++++.+. |||++||.++|+... .+.
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~ 166 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDI 166 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCB
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCC
Confidence 8642 2 3999999999765433333433 4779999999999999998874 899999999998654 455
Q ss_pred CCCCCCCC---------CCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC-------------C--
Q 027129 160 DESYWGNV---------NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-------------D-- 215 (228)
Q Consensus 160 ~e~~~~~~---------~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-------------~-- 215 (228)
+|+.+... .+..+.+.|+.+|..+|.+++.++.+++++++++||+.||||++... .
T Consensus 167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~ 246 (404)
T 1i24_A 167 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 246 (404)
T ss_dssp CSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTT
T ss_pred CccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccch
Confidence 66432110 24566788999999999999999888899999999999999987431 0
Q ss_pred ccHHHHHHHHHh
Q 027129 216 GRVVSNFIAQAI 227 (228)
Q Consensus 216 ~~~~~~~i~~~~ 227 (228)
..+++.++.+++
T Consensus 247 ~~~~~~~~~~~~ 258 (404)
T 1i24_A 247 GTALNRFCVQAA 258 (404)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 246777777653
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=196.51 Aligned_cols=168 Identities=21% Similarity=0.234 Sum_probs=138.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cC--CccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~D~vi 102 (228)
+|+|+||||+||||++++++|++. | ++|++++|...... .. .++.++.+|+++.. +. ++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~--~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vi 73 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNTD--VV-----NSGPFEVVNALDFNQIEHLVEVHKITDIY 73 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSCH--HH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCcccc--cc-----CCCceEEecCCCHHHHHHHHhhcCCCEEE
Confidence 478999999999999999999998 8 99999999644321 11 24678899998853 22 799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCChHHHhH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
|+|+.... ....++...+++|+.++.++++++++.++ |||++||..+|+.... .+.+|+ .+..|.+.|+.+|
T Consensus 74 h~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK 147 (312)
T 2yy7_A 74 LMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGISK 147 (312)
T ss_dssp ECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHHH
T ss_pred ECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHHH
Confidence 99986432 22356678899999999999999999887 9999999999987543 455666 5677788999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
..+|.+++.++.+++++++++||+.+||++..+
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~ 180 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPP 180 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCC
Confidence 999999999988889999999999999987544
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=190.57 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=131.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
.||+|+|||||||||++++++|++.| ++|++++|+..+... . ...++++.+|+++.. +.++|+|||+|
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKI----E--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCC----C--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchh----c--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 37899999999999999999999999 999999995433221 1 157899999999864 34799999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
|... .....++.|+.++.++++++++.++ |||++||.++|....... .|+ .+..|.+.|+.+|...|
T Consensus 76 ~~~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y~~sK~~~e 143 (227)
T 3dhn_A 76 NPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENILPGVKALGE 143 (227)
T ss_dssp CC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGHHHHHHHHH
T ss_pred cCCC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHHHHHHHHHH
Confidence 7542 1223678899999999999999998 899999998775443322 233 46667788999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+++.++++++++++++||+.+||+++..
T Consensus 144 ~~~~~~~~~~~~~~~ilrp~~v~g~~~~~ 172 (227)
T 3dhn_A 144 FYLNFLMKEKEIDWVFFSPAADMRPGVRT 172 (227)
T ss_dssp HHHHTGGGCCSSEEEEEECCSEEESCCCC
T ss_pred HHHHHHhhccCccEEEEeCCcccCCCccc
Confidence 99999887789999999999999998653
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=205.96 Aligned_cols=188 Identities=21% Similarity=0.229 Sum_probs=147.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhc---CCCeEEEEcCCCCCCc--hhhhhhcC--------------CCceEEEecc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSK--DNLRKWIG--------------HPRFELIRHD 89 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~~~~~--~~~~~~~~--------------~~~~~~~~~d 89 (228)
..++|+|+|||||||||++++++|++. | ++|++++|...... +.+..... ..++.++.+|
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 345899999999999999999999999 8 99999999544221 11111111 2579999999
Q ss_pred CCCccc-----------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCC
Q 027129 90 VTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH 157 (228)
Q Consensus 90 ~~~~~~-----------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~ 157 (228)
+++..+ .++|+|||+||.... .++...++.|+.++.+++++|.+.++ +||++||.++|+.....
T Consensus 149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~ 224 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPS 224 (478)
T ss_dssp TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTT
T ss_pred CCCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCC
Confidence 986532 269999999997643 56678889999999999999999887 89999999999987777
Q ss_pred CCCCCCCCCCCCCCC-----------CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC---CCccHHHHHH
Q 027129 158 PQDESYWGNVNPIGV-----------RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI---DDGRVVSNFI 223 (228)
Q Consensus 158 ~~~e~~~~~~~~~~~-----------~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~---~~~~~~~~~i 223 (228)
+++|+. +..+ .+.|+.+|..+|.+++.++.+++++++++||+.|||++... ....++..++
T Consensus 225 ~~~E~~-----~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~ 299 (478)
T 4dqv_A 225 AFTEDA-----DIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMV 299 (478)
T ss_dssp TCCSSS-----CHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHH
T ss_pred CcCCcc-----cccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHH
Confidence 777763 2222 24599999999999999988889999999999999986521 1245777776
Q ss_pred HHH
Q 027129 224 AQA 226 (228)
Q Consensus 224 ~~~ 226 (228)
..+
T Consensus 300 ~~~ 302 (478)
T 4dqv_A 300 LSL 302 (478)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=197.11 Aligned_cols=183 Identities=22% Similarity=0.301 Sum_probs=141.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cC-----CccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI-----EVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~-----~~D~v 101 (228)
+|+|+||||+||||++++++|++.|.++|++++|...... ...+ ..+. +.+|+++.. .. ++|+|
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~---~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~V 119 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL---VDLN-IADYMDKEDFLIQIMAGEEFGDVEAI 119 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT---TTSC-CSEEEEHHHHHHHHHTTCCCSSCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc---cCce-EeeecCcHHHHHHHHhhcccCCCCEE
Confidence 5899999999999999999999998678999988543221 1111 1122 444554431 12 59999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
||+|+.... ...+++..+++|+.++.++++++++.++|||++||..+|+.....+++|+ .+..|.+.|+.+|.
T Consensus 120 ih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~ 192 (357)
T 2x6t_A 120 FHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVFGYSKF 192 (357)
T ss_dssp EECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHHHHHHH
T ss_pred EECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChhHHHHH
Confidence 999986543 34567788999999999999999988779999999999997766677887 56777889999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
.+|.+++.++.+++++++++||+.||||++.... ..+++.++..+.
T Consensus 193 ~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~ 240 (357)
T 2x6t_A 193 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLN 240 (357)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHH
Confidence 9999999998888999999999999999876321 247777766553
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=195.17 Aligned_cols=174 Identities=21% Similarity=0.313 Sum_probs=138.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cC--CccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~D~vi~~ 104 (228)
+|+|+||||+||||++++++|++.| ++|+++.|.. .+|+++.. +. ++|+|||+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~-------------------~~D~~d~~~~~~~~~~~~~d~vih~ 62 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD-------------------ELNLLDSRAVHDFFASERIDQVYLA 62 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT-------------------TCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc-------------------cCCccCHHHHHHHHHhcCCCEEEEc
Confidence 5899999999999999999999999 9999988731 14555432 22 79999999
Q ss_pred cCCCCcc-cccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC-ChHHHhHH
Q 027129 105 ACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKR 181 (228)
Q Consensus 105 a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~-~~y~~sK~ 181 (228)
|+..... ....++...+++|+.++.++++++++.++ |||++||..+|+.....+++|+.+.. .+..|. +.|+.+|.
T Consensus 63 a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~ 141 (321)
T 1e6u_A 63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIAKI 141 (321)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHHHH
T ss_pred CeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHHHH
Confidence 9865421 22345678889999999999999999988 89999999999987677778874321 134443 58999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHH
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQA 226 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~ 226 (228)
.+|++++.++.+++++++++||+.+|||++... ...+++.++..+
T Consensus 142 ~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~ 188 (321)
T 1e6u_A 142 AGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188 (321)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHH
Confidence 999999999888899999999999999987642 134777777665
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=197.86 Aligned_cols=174 Identities=23% Similarity=0.247 Sum_probs=140.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcC-----CC-ceEEEeccCCCccc-----C--Cc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-----HP-RFELIRHDVTEPLL-----I--EV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~-----~~-~~~~~~~d~~~~~~-----~--~~ 98 (228)
|+||||||+||||++++++|++.| ++|++++|...... .....+.. .. ++.++.+|+++... . ++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 107 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 107 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence 799999999999999999999999 99999999654311 11211111 12 68889999988632 1 47
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC------CeEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG------ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
|+|||+||.........++...+++|+.++.++++++.+.+ .+||++||..+|+.... +++|+ .+..+
T Consensus 108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~~ 181 (381)
T 1n7h_A 108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHP 181 (381)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCCC
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence 99999998765433345667888999999999999998765 28999999999997665 77777 56777
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+.|+.+|..+|.+++.++.+++++++++|+.++|||+...
T Consensus 182 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~ 222 (381)
T 1n7h_A 182 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE 222 (381)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCT
T ss_pred CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCC
Confidence 88999999999999999998889999999999999998654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=194.61 Aligned_cols=179 Identities=23% Similarity=0.323 Sum_probs=129.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch--hhhhhcCCCceEEEeccCCCccc-----CCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi~~ 104 (228)
+|+||||||+||||++++++|+++| ++|+++.|+...... ....+....+++++++|+++... .++|+|||+
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 6899999999999999999999999 999998885443211 11112112468889999988643 379999999
Q ss_pred cCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccce-eccCCC---CCCCCCCCCCCCCC---CCCC-
Q 027129 105 ACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDPL---VHPQDESYWGNVNP---IGVR- 173 (228)
Q Consensus 105 a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~-~y~~~~---~~~~~e~~~~~~~~---~~~~- 173 (228)
|+.... ...++ .+.+++|+.++.++++++++.+ + |||++||.. +|+... ..+++|+.+...+. ..+.
T Consensus 88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 165 (338)
T 2rh8_A 88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT 165 (338)
T ss_dssp SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence 986421 22233 3478999999999999999986 6 899999987 443221 13677775433222 2221
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
..|+.+|.++|.+++.++++++++++++||+.||||++..
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~ 205 (338)
T 2rh8_A 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTS 205 (338)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 2599999999999999887789999999999999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=193.82 Aligned_cols=175 Identities=28% Similarity=0.460 Sum_probs=137.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cC--CccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~D~vi~ 103 (228)
.+|+|+||||+||||++++++|++.| ++|++++|......+....+ .++.++.+|+++.. +. ++|+|||
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~l---~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih 94 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPPV---AGLSVIEGSVTDAGLLERAFDSFKPTHVVH 94 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGGSCSC---TTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhhhhcc---CCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence 36899999999999999999999999 99999999544332111111 46889999999863 23 7999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCC--CCCCCCCCCCCCCCCCChHHHhH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~--~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
+||..... ...++ . +++|+.++.++++++.+.++ +||++||..+|+..... +++|+ . .+.+.|+.+|
T Consensus 95 ~A~~~~~~-~~~~~-~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~-----~--~~~~~Y~~sK 164 (330)
T 2pzm_A 95 SAAAYKDP-DDWAE-D-AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSP-----T--APFTSYGISK 164 (330)
T ss_dssp CCCCCSCT-TCHHH-H-HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCC-----C--CCCSHHHHHH
T ss_pred CCccCCCc-cccCh-h-HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCC-----C--CCCChHHHHH
Confidence 99875432 11222 3 89999999999999998887 99999999999865443 66776 3 5567899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
..+|.+++.+ +++++++||+++|||+.. ..+++.++..+
T Consensus 165 ~~~e~~~~~~----~~~~~~iR~~~v~gp~~~---~~~~~~~~~~~ 203 (330)
T 2pzm_A 165 TAGEAFLMMS----DVPVVSLRLANVTGPRLA---IGPIPTFYKRL 203 (330)
T ss_dssp HHHHHHHHTC----SSCEEEEEECEEECTTCC---SSHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCEEEEeeeeeECcCCC---CCHHHHHHHHH
Confidence 9999998775 799999999999999862 33666666654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=194.45 Aligned_cols=175 Identities=25% Similarity=0.383 Sum_probs=135.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CC--ccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IE--VDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~--~D~vi 102 (228)
.+||+|+||||+||||++++++|++.| ++|++++|......+.+.. ..++.++.+|+++... .+ +|+||
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vi 94 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPDAVV 94 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCcEEE
Confidence 348999999999999999999999999 9999999964433222221 1478899999998642 23 99999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceecc----CCCCCCCCCCCCCCCCCCCCC-ChH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVR-SCY 176 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~----~~~~~~~~e~~~~~~~~~~~~-~~y 176 (228)
|+||..... ...++ . +++|+.++.++++++.+.++ +||++||..+|+ .... +++|+ . .|. +.|
T Consensus 95 h~A~~~~~~-~~~~~-~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~-----~--~p~~~~Y 163 (333)
T 2q1w_A 95 HTAASYKDP-DDWYN-D-TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHP-----R--NPANSSY 163 (333)
T ss_dssp ECCCCCSCT-TCHHH-H-HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSC-----C--CCTTCHH
T ss_pred ECceecCCC-ccCCh-H-HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCC-----C--CCCCCch
Confidence 999875432 11222 2 89999999999999999887 999999999998 5444 66776 2 455 789
Q ss_pred HHhHHHHHHHHHH-HHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 177 DEGKRVAETLMFD-YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 177 ~~sK~~~e~~~~~-~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+.+|..+|.+++. ++ +++++||+.+|||+.. ..+++.++..+.
T Consensus 164 ~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~---~~~~~~~~~~~~ 207 (333)
T 2q1w_A 164 AISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV---SGPLPIFFQRLS 207 (333)
T ss_dssp HHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC---SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc---CcHHHHHHHHHH
Confidence 9999999999887 54 7999999999999832 347777776543
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=191.80 Aligned_cols=181 Identities=23% Similarity=0.328 Sum_probs=140.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccC-----CccEEEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLI-----EVDQIYH 103 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~-----~~D~vi~ 103 (228)
+|+|||||||||++++++|++.|.++|++++|...... ..... .+. +.+|+++. ... ++|+|||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~---~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~ 74 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV---DLN-IADYMDKEDFLIQIMAGEEFGDVEAIFH 74 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH---TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC---cce-eccccccHHHHHHHHhccccCCCcEEEE
Confidence 58999999999999999999998678999988543321 11111 111 44455443 122 4999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
+|+.... ...++...+++|+.++.++++++++.++|||++||..+|+.....+++|+ .+..|.+.|+.+|..+
T Consensus 75 ~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 147 (310)
T 1eq2_A 75 EGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLF 147 (310)
T ss_dssp CCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHH
T ss_pred CcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHH
Confidence 9986543 34567788999999999999999988789999999999997766677887 5677788999999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCCCC--CccHHHHHHHHHh
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAI 227 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~--~~~~~~~~i~~~~ 227 (228)
|.+++.++.+++++++++||+.+|||++... ...+++.++..+.
T Consensus 148 e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 193 (310)
T 1eq2_A 148 DEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLN 193 (310)
T ss_dssp HHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHH
Confidence 9999999888899999999999999987531 1246777766543
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=193.70 Aligned_cols=163 Identities=21% Similarity=0.162 Sum_probs=134.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~a 105 (228)
|+|+||||+||||++++++|+ +| ++|++++|.. ..+.+|+++... . ++|+|||+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~----------------~~~~~D~~d~~~~~~~~~~~~~d~vih~a 62 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS----------------KEFCGDFSNPKGVAETVRKLRPDVIVNAA 62 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC----------------SSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc----------------ccccccCCCHHHHHHHHHhcCCCEEEECc
Confidence 689999999999999999999 89 9999999943 124567666432 2 499999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
+.........++...++.|+.++.++++++++.++|||++||..+|+.....+++|+ .+..|.+.|+.+|..+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~ 137 (299)
T 1n2s_A 63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEK 137 (299)
T ss_dssp CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred ccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHHHHHHHHHHH
Confidence 876543345677888999999999999999988889999999999998776678887 577788899999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+++.++ .+++++||+.+||+++.. +++.++..+
T Consensus 138 ~~~~~~----~~~~ilRp~~v~G~~~~~----~~~~~~~~~ 170 (299)
T 1n2s_A 138 ALQDNC----PKHLIFRTSWVYAGKGNN----FAKTMLRLA 170 (299)
T ss_dssp HHHHHC----SSEEEEEECSEECSSSCC----HHHHHHHHH
T ss_pred HHHHhC----CCeEEEeeeeecCCCcCc----HHHHHHHHH
Confidence 988764 489999999999997652 666666544
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=209.02 Aligned_cols=192 Identities=27% Similarity=0.468 Sum_probs=150.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi 102 (228)
..+|+|+|||||||||++++++|++. | ++|++++|...... .+....+++++.+|+++... .++|+||
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~~----~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vi 387 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVL 387 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTTG----GGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhhh----hhccCCceEEEECCCCCcHHHHHHhhcCCCEEE
Confidence 34789999999999999999999998 8 99999999644322 22233578999999997531 2699999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCC-CCC-CCCCChHHHhH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNP-IGVRSCYDEGK 180 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~-~~~-~~~~~~y~~sK 180 (228)
|+||...+.....++...++.|+.++.++++++++.+.|||++||..+|+.....+++|+.+.. ..+ ..+.+.|+.+|
T Consensus 388 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK 467 (660)
T 1z7e_A 388 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 467 (660)
T ss_dssp ECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred ECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHH
Confidence 9999765433445677889999999999999999888789999999999977666777773210 011 14556899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC------CCccHHHHHHHHH
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI------DDGRVVSNFIAQA 226 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~------~~~~~~~~~i~~~ 226 (228)
..+|.+++.++.+++++++++||+.+||++... ....+++.++.++
T Consensus 468 ~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~ 519 (660)
T 1z7e_A 468 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNL 519 (660)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHH
Confidence 999999999988889999999999999998753 1134677776654
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=191.88 Aligned_cols=187 Identities=21% Similarity=0.281 Sum_probs=148.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~ 97 (228)
..+|+|+||||+||||++++++|++.|. ++|++++|....... ....++.++.+|+++... .+
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~ 86 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEAR 86 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHTC
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999999983 589999996443221 123468889999998642 37
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-----C-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+|+|||+||.... ....++...+++|+.++.++++++++.+ + +||++||..+|+.....+++|+ .+..
T Consensus 87 ~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~ 160 (342)
T 2hrz_A 87 PDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHTT 160 (342)
T ss_dssp CSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCCC
T ss_pred CCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCCC
Confidence 9999999986431 2234667888999999999999998875 5 8999999999987655677887 5677
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccC-CCCCCCC-ccHHHHHHHHHh
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG-PRMNIDD-GRVVSNFIAQAI 227 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G-~~~~~~~-~~~~~~~i~~~~ 227 (228)
+.+.|+.+|..+|.+++.++.+++++++++|++.+|| |+..... ..+++.++..++
T Consensus 161 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~ 218 (342)
T 2hrz_A 161 PLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPL 218 (342)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHh
Confidence 7889999999999999999888789999999999999 7653321 346677766543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=190.77 Aligned_cols=157 Identities=21% Similarity=0.266 Sum_probs=108.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~~ 104 (228)
+|+|+|||||||||++++++|+++| ++|++++|.... .. ++.+|+++.... ++|+|||+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~ 67 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHC 67 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-------------------------------CHHHHHHHCCSEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEEC
Confidence 5899999999999999999999999 999999984322 11 566777765422 48999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
||.........++...+++|+.++.++++++.+.++|||++||..+|+. ...+++|+ .+..+.+.|+.+|..+|
T Consensus 68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y~~sK~~~e 141 (315)
T 2ydy_A 68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLYGKTKLDGE 141 (315)
T ss_dssp C-------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHHHHHHHHHH
Confidence 9976544344567788999999999999999998889999999999987 45677777 56677889999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.+++.+ +++++++||+.|||+++.
T Consensus 142 ~~~~~~----~~~~~~lR~~~v~G~~~~ 165 (315)
T 2ydy_A 142 KAVLEN----NLGAAVLRIPILYGEVEK 165 (315)
T ss_dssp HHHHHH----CTTCEEEEECSEECSCSS
T ss_pred HHHHHh----CCCeEEEeeeeeeCCCCc
Confidence 998875 578899999999999876
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=191.11 Aligned_cols=155 Identities=22% Similarity=0.249 Sum_probs=128.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-----C-ccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----E-VDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~-~D~vi~~ 104 (228)
+||+|+||| +||||++++++|++.| ++|++++|..... ...++++.+|+++.... + +|+|||+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~ 70 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYC 70 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEe
Confidence 478999999 5999999999999999 9999999964432 24688899999886432 3 9999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
|+.. ..++...++.|+.++.++++++++.++ |||++||.++|+.....+++|+ .+..|.+.|+.+|..+
T Consensus 71 a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 140 (286)
T 3gpi_A 71 VAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRMLEA 140 (286)
T ss_dssp HHHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHHHHH
T ss_pred CCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHHHHH
Confidence 9752 244567788999999999999998887 8999999999998877788888 6778889999999999
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
|++ +.+ ++++++||+.+||+++.
T Consensus 141 E~~-~~~-----~~~~ilR~~~v~G~~~~ 163 (286)
T 3gpi_A 141 EAL-LAA-----YSSTILRFSGIYGPGRL 163 (286)
T ss_dssp HHH-GGG-----SSEEEEEECEEEBTTBC
T ss_pred HHH-Hhc-----CCeEEEecccccCCCch
Confidence 998 553 89999999999999865
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=187.36 Aligned_cols=179 Identities=23% Similarity=0.326 Sum_probs=131.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--C--CCceEEEeccCCCccc-----CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--G--HPRFELIRHDVTEPLL-----IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~~d~~~~~~-----~~~D~v 101 (228)
++|+||||||+||||++++++|+++| ++|+++.|+.... .....+. . ..+++++.+|+++... .++|+|
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 81 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNV-KKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV 81 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCH-HHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchh-HHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence 36899999999999999999999999 9999998854321 1111111 1 1257889999998643 379999
Q ss_pred EEccCCCCcccccCCc-hhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccce-eccCCC-CCCCCCCCCCCCCC----CCC
Q 027129 102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDPL-VHPQDESYWGNVNP----IGV 172 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~-~y~~~~-~~~~~e~~~~~~~~----~~~ 172 (228)
||+|+... ....++ ...+++|+.++.++++++++.+ + |||++||.. +|+... ..+.+|+.+...+. ..+
T Consensus 82 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 159 (337)
T 2c29_D 82 FHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMT 159 (337)
T ss_dssp EECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred EEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCc
Confidence 99998542 122333 3578999999999999999887 5 899999987 454332 23456653321110 013
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+.|+.+|.++|.+++.++++++++++++||+.+|||++..
T Consensus 160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~ 200 (337)
T 2c29_D 160 AWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMS 200 (337)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 45799999999999999887789999999999999998654
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=188.25 Aligned_cols=163 Identities=28% Similarity=0.327 Sum_probs=134.1
Q ss_pred EEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEc
Q 027129 34 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL 104 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~ 104 (228)
+||||||+||||++++++|++. | ++|++++|...... .+.++.+|+++... . ++|+|||+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~ 69 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHL 69 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEEC
Confidence 5899999999999999999998 7 99999988543221 45778899988532 2 79999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC-CCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~-~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
|+.... ....++...+++|+.++.++++++++.++ |||++||..+|+... ..+.+|+ .+..|.+.|+.+|..
T Consensus 70 a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 70 AGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTKIA 143 (317)
T ss_dssp CCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHHHH
T ss_pred CcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHHHH
Confidence 986432 12345677889999999999999999888 999999999998653 2345555 566778899999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+|.+++.++.+++++++++||+.+||+...+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~ 174 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEP 174 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCC
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCC
Confidence 9999999988889999999999999986543
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=187.42 Aligned_cols=160 Identities=26% Similarity=0.305 Sum_probs=131.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cC--CccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~--~~D~vi~~ 104 (228)
-|+|||||||||||++++++|+++| ++|++++|. .+|+++.. +. ++|+|||+
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih~ 70 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVINC 70 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred cceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 6899999999999999999999999 999999983 24555432 22 69999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
||.........++...+++|+.++.++++++++.++|||++||..+|+.....+++|+ .+..+.+.|+.+|..+|
T Consensus 71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~E 145 (292)
T 1vl0_A 71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGE 145 (292)
T ss_dssp CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHHHHHHHHHH
Confidence 9865543334567788999999999999999998889999999999998766678887 56777889999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.+++.+. .+++++||+.+||+ .. .+++.++..+
T Consensus 146 ~~~~~~~----~~~~~lR~~~v~G~-~~----~~~~~~~~~~ 178 (292)
T 1vl0_A 146 NFVKALN----PKYYIVRTAWLYGD-GN----NFVKTMINLG 178 (292)
T ss_dssp HHHHHHC----SSEEEEEECSEESS-SS----CHHHHHHHHH
T ss_pred HHHHhhC----CCeEEEeeeeeeCC-Cc----ChHHHHHHHH
Confidence 9988763 47999999999999 22 2666665543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=185.04 Aligned_cols=160 Identities=26% Similarity=0.301 Sum_probs=134.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
||+|+||||+||||++++++|++.| ++|++++|...+.. ..++.++.+|+++.. +.++|+|||+|+
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 72 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG 72 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence 4689999999999999999999999 99999999654321 135788899998853 347999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC-CCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~-~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
.. ...+....+++|+.++.++++++++.++ |||++||..+|+... ..+++|+ .+..+.+.|+.+|..+|
T Consensus 73 ~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 143 (267)
T 3ay3_A 73 VS----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSKCFGE 143 (267)
T ss_dssp CC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred CC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHH
Confidence 65 2345577889999999999999999887 899999999998643 4567777 57778889999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
.+++.+..+++++++++||+.+|+.
T Consensus 144 ~~~~~~~~~~gi~~~~lrp~~v~~~ 168 (267)
T 3ay3_A 144 DLASLYYHKFDIETLNIRIGSCFPK 168 (267)
T ss_dssp HHHHHHHHTTCCCEEEEEECBCSSS
T ss_pred HHHHHHHHHcCCCEEEEeceeecCC
Confidence 9999988888999999999999953
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=190.60 Aligned_cols=170 Identities=25% Similarity=0.346 Sum_probs=134.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc-CCC-eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN-EKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
++|+|+||||||+||++++++|++. | + +|++++|...+. ..+.......++.++.+|+.+.. +.++|+|||
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g-~~~V~~~~r~~~~~-~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTN-AKKIIVYSRDELKQ-SEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCC-CSEEEEEESCHHHH-HHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCC-CCEEEEEECChhhH-HHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 3799999999999999999999999 8 6 999999942221 11222222357899999999863 348999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
+||.........++.+.+++|+.++.++++++.+.++ |||++||...+ .|.+.|+.+|..
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~-------------------~p~~~Y~~sK~~ 158 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA-------------------NPINLYGATKLC 158 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS-------------------SCCSHHHHHHHH
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC-------------------CCccHHHHHHHH
Confidence 9997654333455678899999999999999999998 89999997543 234679999999
Q ss_pred HHHHHHHHHHH---hCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 183 AETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 183 ~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+|.+++.++.+ .+++++++||+++||++. .+++.++..+
T Consensus 159 ~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-----~~i~~~~~~~ 200 (344)
T 2gn4_A 159 SDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-----SVVPFFKKLV 200 (344)
T ss_dssp HHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-----SHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-----CHHHHHHHHH
Confidence 99999988754 579999999999999863 3677776654
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=186.99 Aligned_cols=179 Identities=24% Similarity=0.309 Sum_probs=127.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC-CCCC--CchhhhhhcC-CCceEEEeccCCCccc-----CCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTG--SKDNLRKWIG-HPRFELIRHDVTEPLL-----IEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~~-----~~~D~vi 102 (228)
+|+||||||+||||++++++|+++| ++|+++.| +... .......+.. ..++.++.+|+++... .++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 5799999999999999999999999 99999988 4321 1111111100 1257888999998643 3799999
Q ss_pred EccCCCCcccccCC-chhhHHhhHHHHHHHHHHHHHc-CC-eEEEEccceec-cCCC-CCCCCCCCCCCCC---CCCCCC
Q 027129 103 HLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY-GDPL-VHPQDESYWGNVN---PIGVRS 174 (228)
Q Consensus 103 ~~a~~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~y-~~~~-~~~~~e~~~~~~~---~~~~~~ 174 (228)
|+|+.. .....+ ....+++|+.++.++++++.+. ++ |||++||..++ +... ..+++|+.+.... +..|..
T Consensus 80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 999743 112222 2458899999999999999987 66 89999998743 3322 2345565322110 112222
Q ss_pred -hHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 175 -CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 175 -~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.|+.+|.++|.+++.++++++++++++||+.+|||+...
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~ 197 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCP 197 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSS
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCC
Confidence 599999999999999888789999999999999998654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=182.29 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=126.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
||+|+|||| ||||++++++|+++| ++|++++|+.. ....+. ...++++.+|+++....++|+|||+|+.....
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~----~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPD----QMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGG 77 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGG----GHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTB
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChh----hhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccc
Confidence 589999998 999999999999999 99999999432 222111 24689999999886666899999999854321
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHH--cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKR--VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
...+.++++++++ .++ |||++||.++|+.....+++|+ .+..|.+.|+.+|..+|++++
T Consensus 78 -------------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~ 139 (286)
T 3ius_A 78 -------------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAARGRWRVMAEQQWQ 139 (286)
T ss_dssp -------------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHHHH
Confidence 1124688899988 565 8999999999998877788888 677888999999999999998
Q ss_pred HHHHHhCCcEEEeeeccccCCCCCC
Q 027129 189 DYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
.+ ++++++++||+.+||+++..
T Consensus 140 ~~---~~~~~~ilRp~~v~G~~~~~ 161 (286)
T 3ius_A 140 AV---PNLPLHVFRLAGIYGPGRGP 161 (286)
T ss_dssp HS---TTCCEEEEEECEEEBTTBSS
T ss_pred hh---cCCCEEEEeccceECCCchH
Confidence 87 58999999999999997653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=199.69 Aligned_cols=175 Identities=27% Similarity=0.444 Sum_probs=139.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc-----C--CccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL-----I--EVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~-----~--~~D~v 101 (228)
.+|+|+||||+||||++++++|++.| ++|++++|......+....+ ....++.++.+|+++... . ++|+|
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V 88 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV 88 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence 47899999999999999999999999 99999998654433222111 112467889999998532 2 79999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCC----CCCCCCCCCCCCCCCCCCChH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL----VHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~----~~~~~e~~~~~~~~~~~~~~y 176 (228)
||+||..........+...+++|+.++.++++++++.++ |||++||.++|+... ..+.+|+ .+..+.+.|
T Consensus 89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~Y 163 (699)
T 1z45_A 89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPY 163 (699)
T ss_dssp EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHH
T ss_pred EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCChH
Confidence 999987543323345567889999999999999999887 899999999998643 2355665 566777899
Q ss_pred HHhHHHHHHHHHHHHHH--hCCcEEEeeeccccCCCC
Q 027129 177 DEGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~--~~i~~~ilRp~~i~G~~~ 211 (228)
+.+|.++|.+++.++.+ .+++++++||+.+||++.
T Consensus 164 ~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~ 200 (699)
T 1z45_A 164 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHP 200 (699)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCT
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCc
Confidence 99999999999998876 689999999999999864
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=174.35 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=122.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCce-EEEeccCCCc---ccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEP---LLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d~~~~---~~~~~D~vi~~a 105 (228)
..+|+|+||||||+||++++++|+++| ++|++++|+.. ....+.. .++ .++.+|+++. .+.++|+|||+|
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~----~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEE----QGPELRE-RGASDIVVANLEEDFSHAFASIDAVVFAA 92 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGG----GHHHHHH-TTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChH----HHHHHHh-CCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence 447999999999999999999999999 99999999433 2222211 367 8899998722 334899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
|... ..++...+++|+.++.++++++++.+. |||++||.+.+.. +. .+ .+.+.|+.+|..+|
T Consensus 93 g~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y~~sK~~~e 155 (236)
T 3e8x_A 93 GSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHYLVAKRLAD 155 (236)
T ss_dssp CCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHHHHHHHHHH
T ss_pred CCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhHHHHHHHHH
Confidence 8643 356778899999999999999999887 8999999554321 11 11 45578999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.+++ +++++++++||+.+||+...
T Consensus 156 ~~~~----~~gi~~~~lrpg~v~~~~~~ 179 (236)
T 3e8x_A 156 DELK----RSSLDYTIVRPGPLSNEEST 179 (236)
T ss_dssp HHHH----HSSSEEEEEEECSEECSCCC
T ss_pred HHHH----HCCCCEEEEeCCcccCCCCC
Confidence 9876 56999999999999998643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=174.47 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=123.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc---cCCccEEEEccCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~D~vi~~a~~~~ 109 (228)
|+|+|||||||||++++++|+++| ++|++++|+ .+....+. ...++++.+|+++.. +.++|+|||+||...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~----~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 74 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVVRD----PQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPW 74 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEec----cccccccc-CCCceEEecccccccHhhcccCCEEEECCccCC
Confidence 689999999999999999999999 999999993 33333322 257899999998864 458999999998652
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc-CCCCC--CCCCCCCCCCCCCCCCChHHHhHHHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG-DPLVH--PQDESYWGNVNPIGVRSCYDEGKRVAETL 186 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~-~~~~~--~~~e~~~~~~~~~~~~~~y~~sK~~~e~~ 186 (228)
. ....+.|+.++.++++++++.+.|||++||.+.+. ..... +.+|. ....+.+.|+.+|...|.
T Consensus 75 ~-------~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~sK~~~e~- 141 (224)
T 3h2s_A 75 G-------SGRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWYDGALYQYYE- 141 (224)
T ss_dssp T-------SSCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTHHHHHHHHHH-
T ss_pred C-------cchhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhhHHHHHHHHH-
Confidence 1 12247799999999999999888899999986544 32221 22332 334456789999999995
Q ss_pred HHHHHHHhCCcEEEeeeccccCCCC
Q 027129 187 MFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 187 ~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
+..+.++.+++++++||+.+||++.
T Consensus 142 ~~~~~~~~~i~~~ivrp~~v~g~~~ 166 (224)
T 3h2s_A 142 YQFLQMNANVNWIGISPSEAFPSGP 166 (224)
T ss_dssp HHHHTTCTTSCEEEEEECSBCCCCC
T ss_pred HHHHHhcCCCcEEEEcCccccCCCc
Confidence 4555556799999999999999854
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=188.55 Aligned_cols=188 Identities=21% Similarity=0.173 Sum_probs=135.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc--hhhhh----h-------cCCCceEEEeccCCCcc---
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRK----W-------IGHPRFELIRHDVTEPL--- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~-------~~~~~~~~~~~d~~~~~--- 94 (228)
++|+|||||||||||++++++|++.| ++|++++|...... +.+.. . ....++.++.+|+++..
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 36799999999999999999999889 99999999644211 01110 0 01257899999998843
Q ss_pred -cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCC-----CCCCCCCCCCCCCC
Q 027129 95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP-----LVHPQDESYWGNVN 168 (228)
Q Consensus 95 -~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~-----~~~~~~e~~~~~~~ 168 (228)
..++|+|||+||... ...++...+++|+.++.++++++.+.+.+||++||..+ |.. ...+++|+++. .
T Consensus 147 ~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~--~ 220 (427)
T 4f6c_A 147 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--K 220 (427)
T ss_dssp CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC--S
T ss_pred CcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCccccccccc--c
Confidence 347999999998653 23566788899999999999999993349999999988 432 23456666321 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-----ccHHHHHHHHH
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-----GRVVSNFIAQA 226 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-----~~~~~~~i~~~ 226 (228)
+..+.+.|+.+|+.+|.+++.+++ .|++++++||+.|||+...... ..+++.++..+
T Consensus 221 ~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~ 282 (427)
T 4f6c_A 221 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDL 282 (427)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHH
Confidence 244778999999999999999865 5999999999999999876531 23566666654
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-26 Score=175.22 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=123.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-c-----ccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-P-----LLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~D~vi~~a~ 106 (228)
|+|+||||+|+||++++++|+++| ++|++++|+..+.. . ..+++++++|+++ . .+.++|+|||+||
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~----~---~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVP----Q---YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSC----C---CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchh----h---cCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 689999999999999999999999 99999999543222 1 1578999999998 4 3458999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
... ...+++|+.++.++++++++.++ +||++||.++++.. +..| .+..+.+.|+.+|..+|+
T Consensus 73 ~~~--------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK~~~e~ 135 (219)
T 3dqp_A 73 SGG--------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAKHFADL 135 (219)
T ss_dssp CTT--------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHHHHHHH
T ss_pred CCC--------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHHHHHHH
Confidence 654 23668899999999999999987 89999998776532 2222 234456789999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
+++ +..+++++++||+.+||+...
T Consensus 136 ~~~---~~~~i~~~ilrp~~v~g~~~~ 159 (219)
T 3dqp_A 136 YLT---KETNLDYTIIQPGALTEEEAT 159 (219)
T ss_dssp HHH---HSCCCEEEEEEECSEECSCCC
T ss_pred HHH---hccCCcEEEEeCceEecCCCC
Confidence 986 456999999999999998643
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=192.49 Aligned_cols=190 Identities=21% Similarity=0.178 Sum_probs=139.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch--hh----hh-------hcCCCceEEEeccCCCcc--
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NL----RK-------WIGHPRFELIRHDVTEPL-- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~----~~-------~~~~~~~~~~~~d~~~~~-- 94 (228)
.++|+|||||||||||++++++|++.| ++|++++|....... .+ .. .....++.++.+|+.+..
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 347899999999999999999998888 999999995442110 11 00 011357999999999843
Q ss_pred --cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccC-----CCCCCCCCCCCCCC
Q 027129 95 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-----PLVHPQDESYWGNV 167 (228)
Q Consensus 95 --~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~-----~~~~~~~e~~~~~~ 167 (228)
..++|+|||+|+... ...++...++.|+.++.+++++|++.+.+|||+||.++ |. ....+++|+++.
T Consensus 227 ~~~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~-- 300 (508)
T 4f6l_B 227 VLPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY-- 300 (508)
T ss_dssp CCSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSC--
T ss_pred CCccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCccccccccc--
Confidence 247999999998653 33556778899999999999999984459999999998 43 223456666321
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC-----CccHHHHHHHHHh
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-----DGRVVSNFIAQAI 227 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-----~~~~~~~~i~~~~ 227 (228)
.+..+.+.|+.+|+.+|++++.+++ .|++++++||+.|||++.... ...+++.++..++
T Consensus 301 ~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~ 364 (508)
T 4f6l_B 301 KGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLL 364 (508)
T ss_dssp SSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHT
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHH
Confidence 1234678899999999999999765 599999999999999987642 1235777776654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=170.27 Aligned_cols=157 Identities=13% Similarity=0.173 Sum_probs=114.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc---cCCccEEEEccCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~D~vi~~a~~~~ 109 (228)
|+|+|||||||||++++++|+++| ++|++++|+ .+....+. ..++++.+|+++.. +.++|+|||+||...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~----~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIVRN----AGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC----SHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcC----chhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 689999999999999999999999 999999994 33333322 57899999998863 458999999998632
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceecc-CCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHH
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM 187 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~-~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~ 187 (228)
. ..+.|+.++.++++++++.+. |+|++||...|. .....+..|+ .+..+.+.|+.+|...|.+
T Consensus 74 ~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k~~~e~~- 138 (221)
T 3ew7_A 74 D---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTARAQAKQL- 138 (221)
T ss_dssp T---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-
T ss_pred c---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHHHHHHHH-
Confidence 1 246799999999999999876 999999987654 3333344444 4566667899999999986
Q ss_pred HHHHH-HhCCcEEEeeeccccCCCC
Q 027129 188 FDYHR-QHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 188 ~~~~~-~~~i~~~ilRp~~i~G~~~ 211 (228)
..+.. +.+++++++||+.+||++.
T Consensus 139 ~~~~~~~~gi~~~ivrp~~v~g~~~ 163 (221)
T 3ew7_A 139 EHLKSHQAEFSWTYISPSAMFEPGE 163 (221)
T ss_dssp HHHHTTTTTSCEEEEECSSCCCCC-
T ss_pred HHHHhhccCccEEEEeCcceecCCC
Confidence 34443 6799999999999999843
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=188.33 Aligned_cols=159 Identities=19% Similarity=0.127 Sum_probs=122.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC---cccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~D~vi~~a~~~ 108 (228)
||+|||||||||||++++++|++.| ++|++++|...+.. . +..|+.+ ..+.++|+|||+|+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~~~----------~---v~~d~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPKPG----------K---RFWDPLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCCTT----------C---EECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCcc----------c---eeecccchhHHhcCCCCEEEECCCCc
Confidence 7899999999999999999999999 99999999644321 1 3334333 3445899999999875
Q ss_pred Cccc-ccCCchhhHHhhHHHHHHHHHH-HHHcCC-eEEEEccceecc-CCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 109 SPIF-YKYNPVKTIKTNVIGTLNMLGL-AKRVGA-RILLTSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 109 ~~~~-~~~~~~~~~~~n~~~~~~l~~~-~~~~~~-r~i~~Ss~~~y~-~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
.... ...+....+++|+.++.+++++ +++.++ +||++||.++|+ .....+++|+ .+. +.+.|+.+|...|
T Consensus 213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~-----~~~-~~~~y~~~~~~~E 286 (516)
T 3oh8_A 213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEE-----SES-GDDFLAEVCRDWE 286 (516)
T ss_dssp ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTT-----SCC-CSSHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCC-----CCC-CcChHHHHHHHHH
Confidence 4322 2234567889999999999999 555566 899999999998 5555677777 343 6688999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
..+.. +...|++++++||+.+||++.
T Consensus 287 ~~~~~-~~~~gi~~~ilRp~~v~Gp~~ 312 (516)
T 3oh8_A 287 HATAP-ASDAGKRVAFIRTGVALSGRG 312 (516)
T ss_dssp HTTHH-HHHTTCEEEEEEECEEEBTTB
T ss_pred HHHHH-HHhCCCCEEEEEeeEEECCCC
Confidence 87654 455699999999999999973
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=178.37 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=132.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC----CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCC---cc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK----NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIE---VD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~---~D 99 (228)
+|+|+|||||||||++++++|+++|. ++|++++|...... ....+++++.+|+++.. +.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 47999999999999999999999874 79999999654432 12346889999998863 234 99
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc--CC-eEE-------EEccceeccCC--CCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RIL-------LTSTSEVYGDP--LVHPQDESYWGNV 167 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-r~i-------~~Ss~~~y~~~--~~~~~~e~~~~~~ 167 (228)
+|||+|+... .++...++.|+.++.+++++|++. ++ +|| |+||..+||.. ...+++|+
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~----- 144 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTED----- 144 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTT-----
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcc-----
Confidence 9999998642 356788899999999999999987 56 787 79999999875 23566776
Q ss_pred CCCCC-CChHHHhHHHHHHHHHHHHHHhC-CcEEEeeeccccCCCCCCCCccHHHH
Q 027129 168 NPIGV-RSCYDEGKRVAETLMFDYHRQHG-IEIRIARIFNTYGPRMNIDDGRVVSN 221 (228)
Q Consensus 168 ~~~~~-~~~y~~sK~~~e~~~~~~~~~~~-i~~~ilRp~~i~G~~~~~~~~~~~~~ 221 (228)
.+..+ .+.| ..+|+.++.++++++ ++++++||+.+||+++......+++.
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~ 196 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTL 196 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHH
Confidence 33333 4567 358999988887776 99999999999999876433344554
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-25 Score=182.37 Aligned_cols=151 Identities=26% Similarity=0.347 Sum_probs=125.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
|+|+|||||||||++++++|++.| + +|++++|. ...+.+... +.++|+|||+|+...+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g-~~~v~~~d~~--~d~~~l~~~-----------------~~~~d~Vih~a~~~~~- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTT-DHHIFEVHRQ--TKEEELESA-----------------LLKADFIVHLAGVNRP- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHC-CCEEEECCTT--CCHHHHHHH-----------------HHHCSEEEECCCSBCT-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CCEEEEECCC--CCHHHHHHH-----------------hccCCEEEECCcCCCC-
Confidence 789999999999999999999999 7 99999883 112222211 1258999999986543
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHH
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~ 189 (228)
.++...++.|+.++.++++++++.++ +||++||..+|+ .+.|+.+|..+|++++.
T Consensus 60 ---~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~ 116 (369)
T 3st7_A 60 ---EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLRE 116 (369)
T ss_dssp ---TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHH
Confidence 35567788999999999999999885 799999999885 25699999999999999
Q ss_pred HHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 190 ~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
++++++++++++||+.+||++..+....+++.++..+.
T Consensus 117 ~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~ 154 (369)
T 3st7_A 117 YAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIA 154 (369)
T ss_dssp HHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHH
T ss_pred HHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHH
Confidence 99988999999999999999887755568888887764
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=170.44 Aligned_cols=149 Identities=23% Similarity=0.204 Sum_probs=122.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C--CccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~--~~D~vi~~a 105 (228)
|+|+||||+||||++++++|+ +| ++|++++|..... .+ +.+|+++... . ++|+|||+|
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a 65 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ER-HEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAA 65 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TT-SCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCChhHHHHHHHHh-cC-CeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECC
Confidence 589999999999999999999 48 9999999954211 12 7788887532 1 499999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
|.........++...+++|+.++.++++++++.+.|||++||..+|+... .+++|+ .+..+.+.|+.+|..+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~-~~~~e~-----~~~~~~~~Y~~sK~~~e~ 139 (273)
T 2ggs_A 66 AMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEK-GNYKEE-----DIPNPINYYGLSKLLGET 139 (273)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSS-CSBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred cccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCC-CCcCCC-----CCCCCCCHHHHHHHHHHH
Confidence 87654333456778899999999999999998878999999999997653 366776 566777899999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
+++. ++++++||+.+||
T Consensus 140 ~~~~------~~~~~iR~~~v~G 156 (273)
T 2ggs_A 140 FALQ------DDSLIIRTSGIFR 156 (273)
T ss_dssp HHCC------TTCEEEEECCCBS
T ss_pred HHhC------CCeEEEecccccc
Confidence 8765 6789999999998
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=162.63 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=120.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCC---ccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE---VDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~D~vi~~a~ 106 (228)
+|+|+||||+|+||++++++|+++| + +|++++|+..+ ...+++++.+|+++..... +|+|||+||
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g-~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~ 74 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEP-TLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG 74 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCT-TCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CceEEEECCCcHHHHHHHHHHHhCC-CCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECee
Confidence 5799999999999999999999999 7 99999996543 1246777888887643221 899999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.... ...+.+..+++|+.++.++++++++.+. +||++||..+|+. +.+.|+.+|..+|+
T Consensus 75 ~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e~ 134 (215)
T 2a35_A 75 TTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQ 134 (215)
T ss_dssp CCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHH
T ss_pred eccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHHH
Confidence 5432 2356678889999999999999999887 8999999988752 23569999999999
Q ss_pred HHHHHHHHhCCc-EEEeeeccccCCCCC
Q 027129 186 LMFDYHRQHGIE-IRIARIFNTYGPRMN 212 (228)
Q Consensus 186 ~~~~~~~~~~i~-~~ilRp~~i~G~~~~ 212 (228)
+++. .+++ ++++||+.+||++..
T Consensus 135 ~~~~----~~~~~~~~vrp~~v~g~~~~ 158 (215)
T 2a35_A 135 ALQE----QGWPQLTIARPSLLFGPREE 158 (215)
T ss_dssp HHTT----SCCSEEEEEECCSEESTTSC
T ss_pred HHHH----cCCCeEEEEeCceeeCCCCc
Confidence 8765 4899 999999999999754
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=170.05 Aligned_cols=158 Identities=20% Similarity=0.157 Sum_probs=121.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCccc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 112 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~~ 112 (228)
|||||||||||||++|+++|+++| |+|+++.|++... .+.+. +.....+.++|+|||+|+......
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~~-----------~~~~~--~~~~~~l~~~d~vihla~~~i~~~ 66 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGPG-----------RITWD--ELAASGLPSCDAAVNLAGENILNP 66 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCTT-----------EEEHH--HHHHHCCCSCSEEEECCCCCSSCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCcC-----------eeecc--hhhHhhccCCCEEEEeccCcccch
Confidence 789999999999999999999999 9999999953321 11111 112233458999999998543221
Q ss_pred cc----CCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 113 YK----YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 113 ~~----~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.. ......++.|+.++.+++++++..+. +||+.||.++|+.....+.+|+ ++..+.+.|+..+...|.
T Consensus 67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~~~~~~~~e~ 141 (298)
T 4b4o_A 67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFFSNLVTKWEA 141 (298)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchhHHHHHHHHH
Confidence 11 22346778999999999999998775 4899999999999888888888 677888888888887776
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
.. .....+++++++||+.||||+.
T Consensus 142 ~~--~~~~~~~~~~~~r~~~v~g~~~ 165 (298)
T 4b4o_A 142 AA--RLPGDSTRQVVVRSGVVLGRGG 165 (298)
T ss_dssp HH--CCSSSSSEEEEEEECEEECTTS
T ss_pred HH--HhhccCCceeeeeeeeEEcCCC
Confidence 43 2344589999999999999974
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=160.78 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=121.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi 102 (228)
+.+|+++||||+|+||++++++|+++| + +|++++|+..+..+.. ...+.++.+|+++.. +.++|+||
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi 89 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGF 89 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence 347899999999999999999999999 8 9999999655433211 125788899998753 34799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
|+||..... .+.+..+++|+.++.++++++++.+. +||++||..+|+. +.+.|+.+|.
T Consensus 90 ~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~ 148 (242)
T 2bka_A 90 CCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKG 148 (242)
T ss_dssp ECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHH
T ss_pred ECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHH
Confidence 999854321 23467789999999999999999887 8999999988752 1246999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEeeeccccCCCCC
Q 027129 182 VAETLMFDYHRQHGI-EIRIARIFNTYGPRMN 212 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i-~~~ilRp~~i~G~~~~ 212 (228)
..|.+++. .++ +++++||+.+||+...
T Consensus 149 ~~e~~~~~----~~~~~~~~vrpg~v~~~~~~ 176 (242)
T 2bka_A 149 EVEAKVEE----LKFDRYSVFRPGVLLCDRQE 176 (242)
T ss_dssp HHHHHHHT----TCCSEEEEEECCEEECTTGG
T ss_pred HHHHHHHh----cCCCCeEEEcCceecCCCCC
Confidence 99998765 367 5999999999999754
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=161.62 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=120.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
.+|+|+||||+|+||++++++|++. | ++|++++|+ .+....+ ..++.++.+|+++.. +.++|+|||
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~----~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRS----AQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESC----HHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcC----CCchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4789999999999999999999999 7 999999994 3333222 245778899998853 347999999
Q ss_pred ccCCCCccc-------------ccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 104 ~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+||...... ........+++|+.++.++++++++.+. |||++||..++... .+
T Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~-------------~~ 142 (253)
T 1xq6_A 76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPD-------------HP 142 (253)
T ss_dssp CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTT-------------CG
T ss_pred eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCC-------------Cc
Confidence 998653211 0112234679999999999999999887 89999998765321 11
Q ss_pred CCCC--ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 170 IGVR--SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 170 ~~~~--~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
..+. +.|+.+|..+|.+++. ++++++++||+.+||+...
T Consensus 143 ~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~ 183 (253)
T 1xq6_A 143 LNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGG 183 (253)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSS
T ss_pred cccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcc
Confidence 1111 3588899999998754 5899999999999998643
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=165.72 Aligned_cols=162 Identities=20% Similarity=0.133 Sum_probs=124.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+..... ...+.++++|+++... .++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAG-DTVIGTARRTEALDDLVAAY--PDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999 99999999543322222211 2468999999998632 279
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHH----HHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~----~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|+|||+||....... .++++..+++|+.+ ++.++..+++.+. +||++||...+. +
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 144 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------------S 144 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------C
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------C
Confidence 999999997543222 23345678999999 5555555566666 899999987652 3
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
..+.+.|+.+|...|.+.+.++.+ +|+++++++||.++++..
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 189 (281)
T 3m1a_A 145 FAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLF 189 (281)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccc
Confidence 344578999999999999999887 699999999999988753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=154.70 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=115.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
+|+|+||||+|+||++++++|++.| ++|++++|+..+.. .. ...++.++.+|+++.. +.++|+|||+++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~----~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLP----SE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSC----SS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcc----cc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 4899999999999999999999999 99999999543221 11 1346889999999863 347999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.... .+ ..+.|+.++.++++++++.++ +||++||..+|+..... ..+.+.|+.+|..+|.
T Consensus 77 ~~~~----~~---~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~------------~~~~~~y~~~K~~~e~ 137 (206)
T 1hdo_A 77 TRND----LS---PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV------------PPRLQAVTDDHIRMHK 137 (206)
T ss_dssp CTTC----CS---CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS------------CGGGHHHHHHHHHHHH
T ss_pred CCCC----CC---ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc------------cccchhHHHHHHHHHH
Confidence 6543 11 125889999999999999887 89999999988753211 1145679999999999
Q ss_pred HHHHHHHHhCCcEEEeeecccc
Q 027129 186 LMFDYHRQHGIEIRIARIFNTY 207 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~ 207 (228)
+++ +++++++++||+.++
T Consensus 138 ~~~----~~~i~~~~lrp~~~~ 155 (206)
T 1hdo_A 138 VLR----ESGLKYVAVMPPHIG 155 (206)
T ss_dssp HHH----HTCSEEEEECCSEEE
T ss_pred HHH----hCCCCEEEEeCCccc
Confidence 874 358999999999983
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=158.01 Aligned_cols=164 Identities=21% Similarity=0.129 Sum_probs=129.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ...+.++.+|+++... .+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999 99999999654433333333 3467889999998632 27
Q ss_pred ccEEEEccCCCCc-cc-----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASP-IF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+|++||+||.... .. ..++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 151 (271)
T 3tzq_B 86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-------------- 151 (271)
T ss_dssp CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC--------------
Confidence 9999999997633 11 12334678899999999999987 55555 899999987653
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+...|+.+|...+.+.+.++.+ +|+++++++||.++++...
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~ 198 (271)
T 3tzq_B 152 --AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLE 198 (271)
T ss_dssp --BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccc
Confidence 2334467999999999999999887 6899999999999998654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=159.10 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=125.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++... .
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 447899999999999999999999999 999999994322111111111 12467889999998632 2
Q ss_pred CccEEEEccCCCCcccc---cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|+|||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------- 151 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------
Confidence 79999999997654222 23346778999999999988774 4455 899999987763
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...|.+++.++.++ +++++++||+.++++.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~ 196 (255)
T 1fmc_A 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDA 196 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchh
Confidence 22344679999999999999998765 8999999999999874
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=157.11 Aligned_cols=168 Identities=18% Similarity=0.095 Sum_probs=126.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++... .
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAG-ARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999 999999994322211111111 12468899999998632 2
Q ss_pred CccEEEEccCCCC-ccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPAS-PIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~-~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|+|||+||... ..... ++....+++|+.++.++++++.. .+. +||++||...+..
T Consensus 90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------- 156 (260)
T 3awd_A 90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV------------- 156 (260)
T ss_dssp CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc-------------
Confidence 6999999999754 21111 22356789999999999887754 345 8999999865432
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
.+..+.+.|+.+|...|.+++.++.+ ++++++++||+.++++...
T Consensus 157 -~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~ 204 (260)
T 3awd_A 157 -NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTR 204 (260)
T ss_dssp -CSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTH
T ss_pred -CCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhh
Confidence 12233467999999999999999877 6999999999999998654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=151.97 Aligned_cols=161 Identities=18% Similarity=0.102 Sum_probs=123.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc--------CCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL--------IEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~--------~~~D~ 100 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+. +....... ...++++.+|+++... .++|+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 79 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTN----SDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDL 79 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCE
Confidence 347899999999999999999999999 9999999943 22222111 1356777899988632 25899
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----C-C-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|||+||........ ++++..+++|+.++.++++++... + . +||++||...|.. .
T Consensus 80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~ 143 (244)
T 1cyd_A 80 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT----------------F 143 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------------C
T ss_pred EEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC----------------C
Confidence 99999976432221 234567899999999988876543 4 3 8999999877642 2
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.+...|+.+|...|.+++.++.+ ++++++++||+.++++..
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~ 187 (244)
T 1cyd_A 144 PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMG 187 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccc
Confidence 23467999999999999999877 589999999999999753
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=154.87 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=127.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+..... ...+.++++|+++... .+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRN-YRVVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERFGR 96 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence 347899999999999999999999999 99999999544322 1368899999998642 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++++..+++|+.++.++++++ ++.+. +||++||...+.. .
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------~ 162 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP--------------M 162 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC--------------B
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC--------------C
Confidence 99999999976543222 334677899999999999876 45555 8999999865432 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+..+...|+.+|...+.+.+.++.++ |+++++++||.++++...
T Consensus 163 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~ 209 (260)
T 3un1_A 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHP 209 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCC
Confidence 23344679999999999999999886 899999999999998643
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.7e-22 Score=157.48 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=126.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|+++| ++|++++|......+....+....++.++.+|+++... .++
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 93 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 93 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999988432211111222222368899999998642 279
Q ss_pred cEEEEccCCCCcc--c-c---cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPI--F-Y---KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 99 D~vi~~a~~~~~~--~-~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
|+|||+||..... . . .++.+..+++|+.++.++++++.. .+. +||++||...|...
T Consensus 94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------------- 160 (278)
T 2bgk_A 94 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG------------- 160 (278)
T ss_dssp CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-------------
T ss_pred CEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-------------
Confidence 9999999975421 1 1 123456789999999999998765 344 89999999877431
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
..+...|+.+|...+.+++.++.+ +|++++++||+.++++...
T Consensus 161 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 206 (278)
T 2bgk_A 161 --EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLT 206 (278)
T ss_dssp --TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCT
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhh
Confidence 113467999999999999999876 5899999999999998644
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=157.12 Aligned_cols=162 Identities=19% Similarity=0.107 Sum_probs=125.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ...+.++++|+++... .++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 83 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGGL 83 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 99999999432222222222 2467889999998632 279
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++++..+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 84 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (259)
T 4e6p_A 84 DILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR---------------- 147 (259)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc----------------
Confidence 9999999976543322 33456788999999999887643 23 3899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 193 (259)
T 4e6p_A 148 GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHW 193 (259)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchh
Confidence 22334679999999999999998765 89999999999999853
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=157.57 Aligned_cols=163 Identities=13% Similarity=0.054 Sum_probs=124.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++++|+++... .
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 9999999943221111111111 2468889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (263)
T 3ai3_A 85 GADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP-------------- 150 (263)
T ss_dssp SCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC--------------
Confidence 79999999997643222 12345678999999998888764 3455 8999999977642
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 194 (263)
T 3ai3_A 151 --LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPD 194 (263)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 223467999999999999999876 58999999999999974
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=158.62 Aligned_cols=163 Identities=15% Similarity=0.044 Sum_probs=118.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----c----CCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L----IEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~~D~vi 102 (228)
||+|+||||+|+||++++++|+++| ++|++++|+..+... .+.+|+++.. . .++|+||
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi 67 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAG-HTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLV 67 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEE
Confidence 5799999999999999999999999 999999995432211 1344554431 1 3799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCC-CCC-------CCCC--CC
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHP-QDE-------SYWG--NV 167 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~-~~e-------~~~~--~~ 167 (228)
|+||.... ..+++..+++|+.++.++++++.+. +. |||++||..+|+.....+ ..| .... ..
T Consensus 68 ~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (255)
T 2dkn_A 68 CCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAE 144 (255)
T ss_dssp ECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHH
T ss_pred ECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhcc
Confidence 99986542 3456788999999999999977653 43 899999999886432111 000 0000 00
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+..+.+.|+.+|...|.+++.++.+ ++++++++||+.++|+.
T Consensus 145 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~ 190 (255)
T 2dkn_A 145 QQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPL 190 (255)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchh
Confidence 00134567999999999999998876 58999999999999974
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=157.57 Aligned_cols=166 Identities=18% Similarity=0.109 Sum_probs=115.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc-------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++...
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 347899999999999999999999999 999999994322211111111 12468889999988631
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|+|||+||....... .++.+..+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------- 157 (266)
T 1xq1_A 91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS------------- 157 (266)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccC-------------
Confidence 478999999997543221 1234567899999999999887 44554 9999999876532
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
..+.+.|+.+|...+.+.+.++.++ |++++++||+.++++...
T Consensus 158 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 203 (266)
T 1xq1_A 158 ---ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAE 203 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhh
Confidence 2234679999999999999988774 899999999999998643
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=154.29 Aligned_cols=164 Identities=16% Similarity=0.033 Sum_probs=123.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCce-EEEeccCCCccc-----------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEPLL-----------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~-----------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ ...+ .++.+|+++... .+
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 347899999999999999999999999 99999999432211111111 1245 888999998632 37
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||........ ++.+..+++|+.++.++++++ ++.+. +||++||...+.. .
T Consensus 86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------------~ 151 (254)
T 2wsb_A 86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIV--------------N 151 (254)
T ss_dssp CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------C
T ss_pred CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccC--------------C
Confidence 99999999976543222 223567889999977777654 44555 8999999876532 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.++ +++++++||+.++++.
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~ 196 (254)
T 2wsb_A 152 RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEM 196 (254)
T ss_dssp SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchh
Confidence 23334679999999999999988775 8999999999999874
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.6e-22 Score=156.38 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=122.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ . ..+.++++|+++... .++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAMAAEL-A-DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHT-G-GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh-h-cCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999999432211111111 1 247888999998632 279
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++.+..+++|+.++.++.++ +++.+. +||++||...+..
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 146 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG---------------- 146 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC----------------
Confidence 999999997643221 223456789999999666554 445555 8999999876532
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
..+...|+.+|...+.+.+.++.+ +|++++++|||.++++..
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 191 (260)
T 1nff_A 147 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMT 191 (260)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGG
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcc
Confidence 123367999999999999998876 589999999999998753
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=154.69 Aligned_cols=164 Identities=16% Similarity=0.059 Sum_probs=123.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++... .+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999 9999999943221111111101 2368899999998632 27
Q ss_pred ccEEEEccCCCCccc---c----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF---Y----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~---~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
+|+|||+||...... . .++++..+++|+.++.++++.+ ++.+. +||++||...+..
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 148 (250)
T 2cfc_A 81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVA------------ 148 (250)
T ss_dssp CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC------------
Confidence 999999999754322 1 1334677899999997776654 34455 8999999876532
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
..+.+.|+.+|...+.+.+.++.++ +++++++||+.++++...
T Consensus 149 ----~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~ 194 (250)
T 2cfc_A 149 ----FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQ 194 (250)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTH
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccc
Confidence 2234679999999999999998775 899999999999998643
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=150.60 Aligned_cols=169 Identities=15% Similarity=0.049 Sum_probs=126.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcccC---------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLLI--------- 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~--------- 96 (228)
..++|+++||||+|+||++++++|++.|. ++|++++|+..... .+..+. ...++.++.+|+++....
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 96 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEG 96 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHHHH
Confidence 34589999999999999999999999985 79999999655433 222221 134788999999986421
Q ss_pred -----CccEEEEccCCCC-ccc----ccCCchhhHHhhHHHHHHHHHHHHHc----------------CCeEEEEcccee
Q 027129 97 -----EVDQIYHLACPAS-PIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----------------GARILLTSTSEV 150 (228)
Q Consensus 97 -----~~D~vi~~a~~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----------------~~r~i~~Ss~~~ 150 (228)
++|+|||+||... ... ..++.+..+++|+.++.++++++... +.+||++||...
T Consensus 97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 176 (267)
T 1sny_A 97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 176 (267)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence 5999999999765 211 12334567899999999999887543 348999999876
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 151 y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+... .+..+...|+.+|...+.+++.++.+ +++++++++||.|..+..
T Consensus 177 ~~~~-------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 227 (267)
T 1sny_A 177 SIQG-------------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 227 (267)
T ss_dssp CSTT-------------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred cccC-------------CCCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCC
Confidence 5432 11224467999999999999998876 589999999999977643
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=154.21 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=122.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ...+.++++|+++... .++
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 82 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEG-ATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGHV 82 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999999655443333222 2367889999998632 279
Q ss_pred cEEEEccCCCCcccc--------cCCchhhHHhhHHHHHHHHHHHHHc----------CC-eEEEEccceeccCCCCCCC
Q 027129 99 DQIYHLACPASPIFY--------KYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVHPQ 159 (228)
Q Consensus 99 D~vi~~a~~~~~~~~--------~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-r~i~~Ss~~~y~~~~~~~~ 159 (228)
|++||+||....... .++++..+++|+.++..+++++... +. +||++||...+..
T Consensus 83 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~------ 156 (257)
T 3tpc_A 83 HGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG------ 156 (257)
T ss_dssp CEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC------
T ss_pred CEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC------
Confidence 999999997643221 2345677899999999999987652 33 7999999876532
Q ss_pred CCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 160 ~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+.+.++.+ +|+++++++||.+.++..
T Consensus 157 ----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~ 201 (257)
T 3tpc_A 157 ----------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMM 201 (257)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhh
Confidence 223467999999999999998877 689999999999998753
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-22 Score=156.92 Aligned_cols=165 Identities=20% Similarity=0.111 Sum_probs=122.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--------CCceEEEeccCCCccc-------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--------HPRFELIRHDVTEPLL------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~------- 95 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++...
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ 84 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence 36899999999999999999999999 9999999943221111111111 1357889999998632
Q ss_pred -----CCc-cEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHHc----C-C-eEEEEccceeccCCCCCCC
Q 027129 96 -----IEV-DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQ 159 (228)
Q Consensus 96 -----~~~-D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-r~i~~Ss~~~y~~~~~~~~ 159 (228)
.++ |+|||+||...... ..++++..+++|+.++.++++++... + . +||++||...+.
T Consensus 85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------- 157 (264)
T 2pd6_A 85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV------- 157 (264)
T ss_dssp HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-------
T ss_pred HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc-------
Confidence 134 99999999765322 12345677899999999999987543 4 3 899999986542
Q ss_pred CCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 160 ~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++.+ +|++++++||+.++++...
T Consensus 158 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 204 (264)
T 2pd6_A 158 ---------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 204 (264)
T ss_dssp ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--
T ss_pred ---------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchh
Confidence 1223467999999999999998877 6999999999999998643
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=155.06 Aligned_cols=164 Identities=15% Similarity=0.059 Sum_probs=122.4
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----------
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------- 95 (228)
..+..++|+++||||+|+||++++++|+++| ++|++++|+..+..+.... ..+.++.+|+++...
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHASVTELRQ----AGAVALYGDFSCETGIMAFIDLLKT 95 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESSCCHHHHHHHH----HTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHh----cCCeEEECCCCCHHHHHHHHHHHHH
Confidence 3344557899999999999999999999999 9999999954432222222 247889999998632
Q ss_pred --CCccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++.+..+++|+.++..+++++.. .+. +||++||...+.
T Consensus 96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 162 (260)
T 3gem_A 96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK------------- 162 (260)
T ss_dssp HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-------------
T ss_pred hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-------------
Confidence 3799999999976543322 23456789999999999887643 343 899999987653
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ ++++++++||.+..+.
T Consensus 163 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~ 206 (260)
T 3gem_A 163 ---GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQP 206 (260)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC--
T ss_pred ---CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCC
Confidence 22344679999999999999998876 4999999999998764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=157.03 Aligned_cols=165 Identities=19% Similarity=0.099 Sum_probs=127.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+... ..+.++++|+++...
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 117 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARAG-ANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF 117 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999 99999999644433333333222 468899999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ ++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~-------------- 183 (293)
T 3rih_A 118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV-------------- 183 (293)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc--------------
Confidence 2799999999976543222 334677899999999999886 34454 999999986421
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+....+.|+.+|...+.+.+.++.+ +|+++++++||.|+++.
T Consensus 184 -~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 229 (293)
T 3rih_A 184 -TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEG 229 (293)
T ss_dssp -BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcc
Confidence 11223467999999999999999877 48999999999999974
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=155.72 Aligned_cols=163 Identities=14% Similarity=0.155 Sum_probs=127.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+...... ...++.++++|+++... .
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 999999995432222222221 12468899999998632 2
Q ss_pred CccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||...... ..++++..+++|+.++.++++++... +.+||++||...+..
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~--------------- 189 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG--------------- 189 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC---------------
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC---------------
Confidence 7999999999754321 22345678899999999999998764 238999999877632
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.++ |+++++++||.|+++.
T Consensus 190 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~ 233 (291)
T 3ijr_A 190 -NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPL 233 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTH
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCc
Confidence 2233679999999999999998775 8999999999999874
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-21 Score=151.25 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=123.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi 102 (228)
++|+++||||+|+||++++++|+++| ++|++++|+ .+.........++.++.+|+++.. +.++|++|
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv 79 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREG-AKVIATDIN----ESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999999999 999999994 333332222236888999999863 23799999
Q ss_pred EccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 103 HLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 103 ~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
|+||........ ++++..+++|+.++.++++++. +.+. +||++||...+... ..+.
T Consensus 80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------~~~~ 144 (246)
T 2ag5_A 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG---------------VVNR 144 (246)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------------CTTB
T ss_pred ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC---------------CCCC
Confidence 999976543221 2345678999999999988764 3455 89999998654321 1134
Q ss_pred ChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..|+.+|...+.+.+.++.++ |++++++||+.++++.
T Consensus 145 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 184 (246)
T 2ag5_A 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPS 184 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcc
Confidence 679999999999999998764 8999999999999874
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=155.97 Aligned_cols=165 Identities=15% Similarity=0.065 Sum_probs=124.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh-hhcC--CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|......+... .+.. ...+.++.+|+++...
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 101 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAG-ANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR 101 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 336899999999999999999999999 999999984322222221 2211 3578899999998632
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 168 (281)
T 3v2h_A 102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV------------- 168 (281)
T ss_dssp TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc-------------
Confidence 2799999999976543322 334577899999999999986 44454 899999987652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 169 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~ 214 (281)
T 3v2h_A 169 ---ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLV 214 (281)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcch
Confidence 22234679999999999999998774 89999999999998753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=154.41 Aligned_cols=163 Identities=15% Similarity=0.060 Sum_probs=123.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc------------c-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~- 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++.+|+++.. +
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 347899999999999999999999999 999999994322211111111 1246788999999863 1
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 151 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------------- 151 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------------
Confidence 479999999997543221 23345678999999999988873 4555 899999987653
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ ++++++++||.++++
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 195 (260)
T 2ae2_A 152 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 195 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSH
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCc
Confidence 12233679999999999999998764 899999999999876
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=154.38 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=126.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC--CceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+... .++.++++|+++...
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 347999999999999999999999999 99999999533222222222221 478899999998642
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ ++++..+++|+.++..+++++... +. +||++||...+.
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 152 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI-------------- 152 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc--------------
Confidence 2799999999976543222 334567899999999998876543 54 999999975421
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.+......|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 153 -~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~ 199 (262)
T 3pk0_A 153 -TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGL 199 (262)
T ss_dssp -BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHH
T ss_pred -CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccc
Confidence 11223467999999999999999887 589999999999998743
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=154.61 Aligned_cols=165 Identities=14% Similarity=0.010 Sum_probs=123.8
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~----------- 95 (228)
.+..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ...+.++.+|+++...
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34557999999999999999999999999 9999999943322222222222 3468899999998642
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH------cCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~------~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||........ ++.+..+++|+.++..+++++.. .+. +||++||...+.
T Consensus 99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~----------- 167 (279)
T 3sju_A 99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ----------- 167 (279)
T ss_dssp HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS-----------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc-----------
Confidence 2799999999976543222 23456788999999999997644 444 899999987652
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+.++
T Consensus 168 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 211 (279)
T 3sju_A 168 -----GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETP 211 (279)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSH
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccch
Confidence 2333467999999999999999877 5899999999999875
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=154.40 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=120.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ...+.++.+|+++... .++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999999432111111111 2357888999998632 279
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++++..+++|+.++..+.+ .+++.+. +||++||...+..
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 144 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG---------------- 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC----------------
Confidence 999999997643221 23346778999999975544 4555565 9999999876532
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..+...|+.+|...+.+.+.++.+ +|+++++++||.++++
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 187 (254)
T 1hdc_A 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCc
Confidence 223467999999999999998876 4899999999999886
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=154.41 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=122.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|......+.. ..+. ....+.++.+|+++... .
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 99999998322111111 1111 12467889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|+|||+||....... .++++..+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 150 (261)
T 1gee_A 85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------------- 150 (261)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC--------------
Confidence 79999999997643221 133457789999999988876543 34 3999999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.++ +++++++||+.++++.
T Consensus 151 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 195 (261)
T 1gee_A 151 --PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPI 195 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGG
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCch
Confidence 23345689999999999999988764 8999999999999975
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=151.32 Aligned_cols=166 Identities=17% Similarity=0.030 Sum_probs=126.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||+|+||++++++|+++| ++|+++++......+...+ +. ...++.++++|+++... .
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEG-YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999 9999988743222222211 11 13468889999998632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ ++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 146 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV--------------- 146 (246)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------------
Confidence 799999999976543222 334568899999999999987 44555 899999986652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~~ 213 (228)
+..+.+.|+.+|...+.+.+.++.+ +|+++++++||.++++....
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~ 194 (246)
T 3osu_A 147 -GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA 194 (246)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc
Confidence 2223467999999999999998874 58999999999999876543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-21 Score=148.93 Aligned_cols=160 Identities=19% Similarity=0.144 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc--------CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL--------IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~--------~~~D~v 101 (228)
++|+++||||+|+||++++++|+++| ++|++++|+. +....+.. ...++++++|+++... .++|+|
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQ----ADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 47899999999999999999999999 9999999942 22222111 1246777899988632 268999
Q ss_pred EEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||+||........ ++.+..+++|+.++.++++++.. .+ . +||++||...+. +..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 144 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc----------------CCC
Confidence 9999975432221 23457889999999988887654 34 4 899999987653 223
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+.+.|+.+|...|.+++.++.+ +++++++++|+.++++..
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~ 187 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMG 187 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccch
Confidence 3467999999999999998876 489999999999999753
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=154.97 Aligned_cols=173 Identities=16% Similarity=0.073 Sum_probs=128.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++++|+++...
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 446899999999999999999999999 9999999954443322222211 3468899999998632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc----C--CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~--~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||....... .++.+..+++|+.++.++++++... + .+||++||...+...... .
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~--- 163 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----L--- 163 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----T---
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----c---
Confidence 259999999997643321 1334567899999999999887532 3 389999998765322100 0
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
.+..+...|+.+|...+.+++.++.++ +++++++||+.++++...
T Consensus 164 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 211 (265)
T 1h5q_A 164 --NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA 211 (265)
T ss_dssp --TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG
T ss_pred --cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccc
Confidence 223345789999999999999998764 899999999999987543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=155.12 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=132.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc--------CCcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL--------IEVD 99 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~--------~~~D 99 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+ .+....... ..++.++++|+++... .++|
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD 88 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRG-ATVIMAVRD----TRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGAD 88 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence 347999999999999999999999999 999999994 333222221 2478999999998632 2789
Q ss_pred EEEEccCCCCcc--cccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCCh
Q 027129 100 QIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 100 ~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~ 175 (228)
++||+||...+. ...++++..+++|+.++.++++++..... |||++||...+..... ....+. ..+..+...
T Consensus 89 ~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~ 164 (291)
T 3rd5_A 89 VLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLA 164 (291)
T ss_dssp EEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHH
T ss_pred EEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcch
Confidence 999999986533 23456788999999999999999987765 8999999877643211 111111 134455578
Q ss_pred HHHhHHHHHHHHHHHHHHh---C--CcEEEeeeccccCCCCC
Q 027129 176 YDEGKRVAETLMFDYHRQH---G--IEIRIARIFNTYGPRMN 212 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~---~--i~~~ilRp~~i~G~~~~ 212 (228)
|+.||...+.+.+.++.++ + ++++.++||.|..+...
T Consensus 165 Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~ 206 (291)
T 3rd5_A 165 YSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQG 206 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccc
Confidence 9999999999999988764 4 99999999999886543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.8e-21 Score=149.94 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=118.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.... ...+..+.+|+++... .++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 75 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQE---------QYPFATEVMDVADAAQVAQVCQRLLAETERL 75 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCCCSS---------CCSSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCchhhh---------cCCceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 9999999954311 1126788899998632 279
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++++..+++|+.++.++++++ ++.+. +||++||...+. +
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 139 (250)
T 2fwm_X 76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT----------------P 139 (250)
T ss_dssp CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------C
Confidence 999999997543221 2345678899999999998877 44444 999999987652 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
..+.+.|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 184 (250)
T 2fwm_X 140 RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQ 184 (250)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccc
Confidence 2334679999999999999998764 89999999999998753
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=151.53 Aligned_cols=164 Identities=14% Similarity=0.059 Sum_probs=123.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-------eEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc--------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-------- 95 (228)
+|+++||||+|+||++++++|++.| + +|++++|+..........+.. ..++.++.+|+++...
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G-~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhc-CcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 5799999999999999999999999 7 899999843221111111111 3468899999998632
Q ss_pred ----CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCC
Q 027129 96 ----IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|+|||+||....... .++.+..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 150 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK---------- 150 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC----------
Confidence 269999999997643221 23356778999999999988864 3454 899999987763
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++.+ +|++++++|||.++++...
T Consensus 151 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 197 (244)
T 2bd0_A 151 ------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWG 197 (244)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTC
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhh
Confidence 2233467999999999999888764 4899999999999998643
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=152.18 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=125.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ ...+.++++|+++... .+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 347899999999999999999999999 99999999654333222222 2468899999998632 27
Q ss_pred ccEEEEccCCCCccc----------ccCCchhhHHhhHHHHHHHHHHHHHc----------CC-eEEEEccceeccCCCC
Q 027129 98 VDQIYHLACPASPIF----------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLV 156 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-r~i~~Ss~~~y~~~~~ 156 (228)
+|+|||+||...... ..++....+++|+.++.++++++... +. +||++||...+..
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--- 163 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG--- 163 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC---
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC---
Confidence 999999999764321 12234677899999999999987654 44 8999999876632
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 157 ~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.+ .++++++++||.+.++.
T Consensus 164 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 207 (265)
T 2o23_A 164 -------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 207 (265)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcc
Confidence 223467999999999999998876 48999999999998874
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=151.25 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=120.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC-CCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+. ....+.+.. ...++.++++|+++... .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 82 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCchhHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 9999999954 211111111 12468889999998632 37
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||....... .++++..+++|+.++.++.++ +++.+. +||++||...+..
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 147 (249)
T 2ew8_A 83 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK--------------- 147 (249)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC---------------
Confidence 9999999997643221 133456789999998888777 555555 8999999877632
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.++ |+++++++||.+.++..
T Consensus 148 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 192 (249)
T 2ew8_A 148 -IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATT 192 (249)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-----
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccc
Confidence 2234679999999999999998764 89999999999988753
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=157.82 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=123.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|++.| ++|++++|+.....+....+.. ..++.++.+|+++...
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 102 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA 102 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 347899999999999999999999999 9999999943221111111111 2468899999998632
Q ss_pred CCccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHH-----cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|+|||+||...... ..++.+..+++|+.++.++++++.. .+. +||++||...+..
T Consensus 103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 170 (302)
T 1w6u_A 103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG------------ 170 (302)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC------------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC------------
Confidence 26899999999654321 1233567889999999999887643 233 8999999876532
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.+ +|++++++|||.+++++
T Consensus 171 ----~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~ 214 (302)
T 1w6u_A 171 ----SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKG 214 (302)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcc
Confidence 223467999999999999999877 68999999999999974
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=149.44 Aligned_cols=145 Identities=20% Similarity=0.158 Sum_probs=114.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~vi~ 103 (228)
+|+++||||+|+||++++++|+ +| ++|++++|+.. .+.+|+++... .++|+|||
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~ 64 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVS 64 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999 99 99999999432 35677776532 25899999
Q ss_pred ccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 104 LACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 104 ~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
+||........ ++....+++|+.++.++++++.+. +.+||++||...+. +..+...|
T Consensus 65 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y 128 (202)
T 3d7l_A 65 ATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASA 128 (202)
T ss_dssp CCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHH
T ss_pred CCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHH
Confidence 99965432222 223466789999999999998775 44899999986542 22334679
Q ss_pred HHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 177 DEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+.+|...|.+++.++.++ +++++++||+.++++.
T Consensus 129 ~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~ 164 (202)
T 3d7l_A 129 AMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESW 164 (202)
T ss_dssp HHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGH
T ss_pred HHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCch
Confidence 999999999999988663 8999999999999974
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=155.55 Aligned_cols=163 Identities=17% Similarity=0.071 Sum_probs=123.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++... .+
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 99 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 99 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999 9999999943221111111111 2468889999998632 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc------CC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~------~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+|++||+||........ ++++..+++|+.++.++++++... +. +||++||...+.
T Consensus 100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 165 (277)
T 2rhc_B 100 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-------------- 165 (277)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS--------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc--------------
Confidence 99999999975432221 234677899999999999986554 44 899999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 166 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 210 (277)
T 2rhc_B 166 --GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM 210 (277)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHH
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCch
Confidence 22234679999999999999988764 7999999999998863
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-21 Score=153.28 Aligned_cols=161 Identities=16% Similarity=0.023 Sum_probs=121.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+.... .. ..+.++++|+++... .++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i 87 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMAAQAVVAG-LE-NGGFAVEVDVTKRASVDAAMQKAIDALGGF 87 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-CT-TCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH-Hh-cCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 9999999943211111111 11 257788999998632 279
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||+||........ ++++..+++|+.++.++++++.. .+ .+||++||...+..
T Consensus 88 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 152 (263)
T 3ak4_A 88 DLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG--------------- 152 (263)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC---------------
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC---------------
Confidence 9999999976432221 23456789999999998887653 34 48999999876521
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.++ |+++++++|+.++++.
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 196 (263)
T 3ak4_A 153 -APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAM 196 (263)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHH
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChh
Confidence 2234679999999999999988764 8999999999999874
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=155.15 Aligned_cols=163 Identities=18% Similarity=0.041 Sum_probs=125.2
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 96 (228)
..++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ..++.++++|+++... .
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 102 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFG 102 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3457999999999999999999999999 99999999432222222222 3467889999998642 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||....... .++++..+++|+.++..+++++.. .+. +||++||...+.
T Consensus 103 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~--------------- 167 (277)
T 3gvc_A 103 GVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV--------------- 167 (277)
T ss_dssp SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc---------------
Confidence 79999999998654322 233567889999999998887643 444 899999986542
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 168 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 212 (277)
T 3gvc_A 168 -AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPM 212 (277)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCch
Confidence 2334467999999999999998876 58999999999999873
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=155.09 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=112.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a 105 (228)
|+|+|||||||||++++++|++. | ++|++++|+..+... +. ...++++.+|+++.. +.++|+|||+|
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~-l~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 74 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKAST-LA----DQGVEVRHGDYNQPESLQKAFAGVSKLLFIS 74 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTTHH-HH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHHhH-Hh----hcCCeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence 57999999999999999999998 8 999999996443221 11 136788999999853 34799999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e 184 (228)
+... .. +.|+.++.++++++++.++ |||++||.++|.. + ..|+.+|..+|
T Consensus 75 ~~~~--------~~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~----~~y~~~K~~~E 125 (287)
T 2jl1_A 75 GPHY--------DN--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------I----IPLAHVHLATE 125 (287)
T ss_dssp CCCS--------CH--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------C----STHHHHHHHHH
T ss_pred CCCc--------Cc--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------C----CchHHHHHHHH
Confidence 8421 11 5799999999999999998 8999999987621 1 25999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
++++. ++++++++||+.++|+.
T Consensus 126 ~~~~~----~~~~~~ilrp~~~~~~~ 147 (287)
T 2jl1_A 126 YAIRT----TNIPYTFLRNALYTDFF 147 (287)
T ss_dssp HHHHH----TTCCEEEEEECCBHHHH
T ss_pred HHHHH----cCCCeEEEECCEecccc
Confidence 98753 58999999999988864
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=153.01 Aligned_cols=164 Identities=12% Similarity=0.010 Sum_probs=122.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-CchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+... ..+....+.. ...+.++.+|+++...
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 81 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999 999999985332 1111111111 2467889999998642
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 148 (260)
T 1x1t_A 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA------------- 148 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcC-------------
Confidence 269999999997543221 23346778999999998888764 3454 8999999876532
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
..+...|+.+|...+.+.+.++.++ |+++++++||.+.++..
T Consensus 149 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 193 (260)
T 1x1t_A 149 ---SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLV 193 (260)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchH
Confidence 2234679999999999999988764 89999999999998753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=155.05 Aligned_cols=165 Identities=18% Similarity=0.097 Sum_probs=125.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~---------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+... ..+.++++|+++...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999999999 99999999533222222222221 268899999998642
Q ss_pred --CCccEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||..... . ..++++..+++|+.++.++++++.. .+. +||++||...+.
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 156 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN----------- 156 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC-----------
Confidence 2689999999963221 1 1233467889999999999887643 333 899999987763
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ ++++++++||.++++..
T Consensus 157 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~ 202 (281)
T 3svt_A 157 -----THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLV 202 (281)
T ss_dssp -----CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGG
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcch
Confidence 22334679999999999999998765 69999999999998753
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=153.27 Aligned_cols=182 Identities=15% Similarity=0.037 Sum_probs=130.1
Q ss_pred CCCCCCCCCCCCCcchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEe
Q 027129 10 HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIR 87 (228)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~ 87 (228)
|+...++-|.+.. ...+..++|+++||||+|+||++++++|+++| ++|++++|+.....+.. ..+. ...++.++.
T Consensus 9 ~~~~~~~~~~~~~--~~~~~~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 85 (283)
T 1g0o_A 9 GESKYDAIPGPLG--PQSASLEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVK 85 (283)
T ss_dssp ---CTTCCCSCSS--GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccccCCCCCCCC--CcccCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEE
Confidence 5544444443322 22233457999999999999999999999999 99999998532211111 1111 124688899
Q ss_pred ccCCCccc------------CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc--CC-eEEEEccc
Q 027129 88 HDVTEPLL------------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTS 148 (228)
Q Consensus 88 ~d~~~~~~------------~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~--~~-r~i~~Ss~ 148 (228)
+|+++... .++|++||+||....... .++++..+++|+.++.++++++... +. +||++||.
T Consensus 86 ~D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 165 (283)
T 1g0o_A 86 ANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI 165 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEech
Confidence 99998632 269999999997643221 2345677899999999999998775 43 99999998
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 149 ~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..+.. .......|+.+|...+.+.+.++.+ +|+++++++||.+.++
T Consensus 166 ~~~~~---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 214 (283)
T 1g0o_A 166 TGQAK---------------AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD 214 (283)
T ss_dssp GGTCS---------------SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred hhccC---------------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccch
Confidence 65421 1112467999999999999998866 4899999999999886
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=148.52 Aligned_cols=165 Identities=15% Similarity=0.023 Sum_probs=118.7
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------CCccE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQ 100 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~D~ 100 (228)
..++++++||||+|+||++++++|+++| ++|++++|+.....+..... ...+.+..+|+++... .++|+
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNAL--KDNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh--ccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 4458999999999999999999999999 99999999422211111121 2468888999988532 37999
Q ss_pred EEEccCCCCcc----cccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+||+||..... ...++++..+++|+.++.++++++. +.+. +||++||...+. +..
T Consensus 88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 151 (249)
T 3f9i_A 88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA----------------GNP 151 (249)
T ss_dssp EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC------------------CCS
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc----------------CCC
Confidence 99999976532 2235567889999999999988763 3444 899999987653 223
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
..+.|+.+|...+.+.+.++.+ +|+++++++||.+.++...
T Consensus 152 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 195 (249)
T 3f9i_A 152 GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTD 195 (249)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC-----
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccc
Confidence 3467999999999999998876 4899999999999987544
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-22 Score=153.17 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=119.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----C---CccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I---EVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~---~~D~vi~~ 104 (228)
|+++||||+|+||++++++|+++ +|++++|+..+.. ....... . .++.+|+++... . ++|+|||+
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~-~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 73 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALA-ELAREVG--A-RALPADLADELEAKALLEEAGPLDLLVHA 73 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHH-HHHHHHT--C-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHH-HHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence 68999999999999999999887 8999999422111 1111111 2 788899988632 2 79999999
Q ss_pred cCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHh
Q 027129 105 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG 179 (228)
Q Consensus 105 a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~s 179 (228)
||...... ..++.+..+++|+.++.++++++++.+. +||++||...|. +..+.+.|+.+
T Consensus 74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~s 137 (207)
T 2yut_A 74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV----------------QVPGFAAYAAA 137 (207)
T ss_dssp CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH----------------SSTTBHHHHHH
T ss_pred CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCcchHHHH
Confidence 99764322 2244567889999999999999966555 899999998773 22344679999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 180 KRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 180 K~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
|...|.+++.++.+ +|++++++||+.++++.
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~ 171 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGL 171 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGG
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCC
Confidence 99999999999877 59999999999999874
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=152.76 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=126.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-----------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|. ....+....+.. ...+.++++|+++... .+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~ 106 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARAG-AHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRR 106 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence 347899999999999999999999999 999999973 211222222222 3468889999998642 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++++..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------------- 170 (273)
T 3uf0_A 107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ---------------- 170 (273)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC----------------
Confidence 99999999986543322 334678899999999998876 34455 899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 171 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 216 (273)
T 3uf0_A 171 GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANT 216 (273)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGG
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCch
Confidence 2333467999999999999999887 589999999999998753
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=154.88 Aligned_cols=164 Identities=13% Similarity=0.021 Sum_probs=121.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---c-CCCceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~----------- 95 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ . ...++.++.+|+++...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999 99999999432211111111 1 12368889999998632
Q ss_pred -CCccEEEEccCCCCccc--------ccCCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEcccee-ccCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEV-YGDPLVHPQDE 161 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~-y~~~~~~~~~e 161 (228)
.++|++||+||...... ..++++..+++|+.++.++++++... +.+||++||... +.
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------- 154 (278)
T 1spx_A 84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH--------- 154 (278)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS---------
T ss_pred cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc---------
Confidence 27999999999754322 22334567899999999998877543 469999999865 42
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 155 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 200 (278)
T 1spx_A 155 -------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFG 200 (278)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccc
Confidence 2223467999999999999998865 589999999999998753
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=150.27 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=124.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D 99 (228)
+|+++||||+|+||++++++|+++| ++|++++| ..+.+.... ...+.++++|+++... .++|
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r----~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 89 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEG-HPLLLLAR----RVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPAD 89 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CCEEEEES----CHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEEC----CHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 6899999999999999999999999 99999999 344443332 2468889999998632 2799
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++||+||........ ++++..+++|+.++.++++++ ++.+. +||++||...+. +.
T Consensus 90 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------------~~ 153 (266)
T 3p19_A 90 AIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK----------------TF 153 (266)
T ss_dssp EEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CC
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------------CC
Confidence 999999976543322 234567899999999977765 34454 999999987652 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
.....|+.+|...+.+.+.++.+ +|+++++++||.|.++...
T Consensus 154 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 198 (266)
T 3p19_A 154 PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLS 198 (266)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGG
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhh
Confidence 33467999999999999999877 4899999999999987543
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=147.97 Aligned_cols=147 Identities=17% Similarity=0.227 Sum_probs=111.2
Q ss_pred CCEEEEecCcchhHHHHHHHHH-hcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc-----cCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
|++|+||||+|+||++++++|+ +.| ++|++++|+..+ ....+. ....+.++.+|+++.. +.++|+|||+
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ 80 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTD-MHITLYGRQLKT---RIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVG 80 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEESSHHH---HSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEecCccc---cchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence 3569999999999999999999 899 999999994320 222221 3357899999999863 3489999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC-hHHHhHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~-~y~~sK~~ 182 (228)
+|.. |+. ++++++++++.+. |||++||..+|+........+. . .... .|+.+|..
T Consensus 81 ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~------~-~~~~~~y~~~K~~ 137 (221)
T 3r6d_A 81 AMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWT------F-DNLPISYVQGERQ 137 (221)
T ss_dssp CCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHH------H-HTSCHHHHHHHHH
T ss_pred CCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccccccc------c-cccccHHHHHHHH
Confidence 9742 344 8899999999887 8999999988864321100000 0 1112 69999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
.|.+++. .+++++++||+.++++
T Consensus 138 ~e~~~~~----~~i~~~~vrpg~v~~~ 160 (221)
T 3r6d_A 138 ARNVLRE----SNLNYTILRLTWLYND 160 (221)
T ss_dssp HHHHHHH----SCSEEEEEEECEEECC
T ss_pred HHHHHHh----CCCCEEEEechhhcCC
Confidence 9998753 5899999999999998
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=151.52 Aligned_cols=166 Identities=14% Similarity=0.029 Sum_probs=122.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+............ ...++.++++|+++... .
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAG-ADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG 110 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHT-CEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999 999999996543222111111 12468889999998632 2
Q ss_pred CccEEEEccCCCCc-ccc-----cCCchhhHHhhHHH----HHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASP-IFY-----KYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~-~~~-----~~~~~~~~~~n~~~----~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|+|||+||.... ... .++....+++|+.+ ++.+++.+++.+. +||++||...+..
T Consensus 111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 178 (279)
T 3ctm_A 111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV------------ 178 (279)
T ss_dssp CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC------------
T ss_pred CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC------------
Confidence 59999999997644 111 12345678899999 4566667776665 9999999865421
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.+..+.+.|+.+|...|.+++.++.++ + ++++++||.+.++..
T Consensus 179 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~ 224 (279)
T 3ctm_A 179 --NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDIT 224 (279)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTT
T ss_pred --CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccc
Confidence 012344679999999999999998774 6 999999999988754
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=152.37 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=124.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|+++ .|+.....+....+.. ..++.++++|+++...
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G-~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENG-YNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF 80 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 347899999999999999999999999 999887 6632221111222211 2468899999998642
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ ++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 146 (258)
T 3oid_A 81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR-------------- 146 (258)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC--------------
Confidence 2689999999975443222 2345678999999999988773 3444 899999987652
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+..+...
T Consensus 147 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 193 (258)
T 3oid_A 147 --YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALK 193 (258)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGG
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhh
Confidence 33344689999999999999998774 899999999999887543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=154.03 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=121.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++... .
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD 84 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999 999999994322111111111 12468889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||....... .++.+..+++|+.++.+++++ +++.+. +||++||...+..
T Consensus 85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 150 (248)
T 2pnf_A 85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTG-------------- 150 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHC--------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCC--------------
Confidence 79999999997643221 133457789999999766664 445565 8999999854421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
..+...|+.+|...+.+.+.++.++ ++++++++|+.++++...
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~ 196 (248)
T 2pnf_A 151 --NVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTA 196 (248)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhh
Confidence 1123579999999999999988763 899999999999987543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=153.59 Aligned_cols=162 Identities=15% Similarity=0.070 Sum_probs=123.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC-CCCCCchhhhhhcC--CCceEEEeccCCCc----cc--------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIG--HPRFELIRHDVTEP----LL-------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~--~~~~~~~~~d~~~~----~~-------- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++| +.....+....+.. ...+.++.+|+++. ..
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence 46899999999999999999999999 99999998 42221111111111 24688899999987 32
Q ss_pred ----CCccEEEEccCCCCccccc---------------CCchhhHHhhHHHHHHHHHHHHHc---C-------CeEEEEc
Q 027129 96 ----IEVDQIYHLACPASPIFYK---------------YNPVKTIKTNVIGTLNMLGLAKRV---G-------ARILLTS 146 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~~~~---------------~~~~~~~~~n~~~~~~l~~~~~~~---~-------~r~i~~S 146 (228)
.++|++||+||........ ++.+..+++|+.++.++++++... + .+||++|
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~is 168 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC 168 (276)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred HHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEC
Confidence 2699999999975432221 233567899999999999988752 2 4899999
Q ss_pred cceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 147 s~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
|...+. +......|+.+|...+.+.+.++.++ |+++++++||.++++
T Consensus 169 S~~~~~----------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~ 218 (276)
T 1mxh_A 169 DAMTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP 218 (276)
T ss_dssp CGGGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC
T ss_pred chhhcC----------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC
Confidence 987663 22234679999999999999998765 899999999999998
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=152.96 Aligned_cols=163 Identities=20% Similarity=0.121 Sum_probs=124.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 96 (228)
..++|+++||||+|+||++++++|+++| ++|++++|+.....+..... ..++..+++|+++... .
T Consensus 24 ~l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 24 DLNQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3457899999999999999999999999 99999999432221111221 2468889999998632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ ++++..+++|+.++..+.+++. +.+. +||++||...+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 165 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS--------------- 165 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------------
Confidence 799999999976543222 2345677899999998888764 3344 899999987652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+.++.
T Consensus 166 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~ 210 (277)
T 4dqx_A 166 -AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPY 210 (277)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCch
Confidence 33344679999999999999998775 8999999999998763
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=149.63 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=123.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCe-EEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCc-cc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEP-LL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~-~~------------ 95 (228)
++|+++||||+|+||++++++|+++| ++ |++++|+... ..+.+.......++.++.+|+++. ..
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G-~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 47899999999999999999999999 75 9999885421 111122222234688899999986 31
Q ss_pred CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHH----c----CCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V----GARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~----~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+||... .++.+..+++|+.++.++++++.. . +.+||++||...+.
T Consensus 83 g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 143 (254)
T 1sby_A 83 KTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN--------------- 143 (254)
T ss_dssp SCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc---------------
Confidence 27999999999642 456778899999999999998753 2 13799999987763
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +++++++++||.+.++.
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~ 188 (254)
T 1sby_A 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL 188 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcc
Confidence 2223467999999999999998876 68999999999998874
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=152.90 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=122.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc------------c-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------~- 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++.. +
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 347899999999999999999999999 999999994322111111111 1246888999999863 1
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ ++.+..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------- 164 (273)
T 1ae1_A 98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA------------- 164 (273)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC-------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC-------------
Confidence 4799999999975433222 2345677899999999998763 4454 8999999977642
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 165 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 209 (273)
T 1ae1_A 165 ---LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLV 209 (273)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchh
Confidence 2234679999999999999998764 89999999999999853
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=150.56 Aligned_cols=165 Identities=19% Similarity=0.120 Sum_probs=127.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC--------chhhhhh-----cCCCceEEEeccCCCccc--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRKW-----IGHPRFELIRHDVTEPLL-- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~~-----~~~~~~~~~~~d~~~~~~-- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.... .+..... ....++.++++|+++...
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAG-ADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE 87 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 47899999999999999999999999 9999999953321 1222111 113468899999998632
Q ss_pred ----------CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCC
Q 027129 96 ----------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLV 156 (228)
Q Consensus 96 ----------~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~ 156 (228)
.++|++||+||....... .++++..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 163 (281)
T 3s55_A 88 SFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS---- 163 (281)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC----
Confidence 279999999997654322 2334677899999999999985 34454 899999987653
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 157 ~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++.+ +|+++++++||.|+++...
T Consensus 164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~ 210 (281)
T 3s55_A 164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTH 210 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTS
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcccc
Confidence 2234467999999999999999886 4899999999999998654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=154.90 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=122.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-Cchhhhhhc-----CCCceEEEeccCCCccc---------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI-----GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~-----~~~~~~~~~~d~~~~~~--------- 95 (228)
++|+++||||+|+||++++++|+++| ++|+++.|+... ..+....+. ....+.++++|+++...
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G-~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46899999999999999999999999 999999885433 222222221 12468899999998632
Q ss_pred ---CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||....... .++....+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~---------- 152 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG---------- 152 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC----------
Confidence 279999999997543222 2334567899999999999987 55565 8999999876532
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....+.|+.||...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 -----TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1122367999999999999999877 58999999999998654
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=153.52 Aligned_cols=167 Identities=17% Similarity=0.142 Sum_probs=126.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
.||+++||||+|+||++++++|+++| ++|+++.|+.....+....... ..++.++++|+++... .
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKG-YSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCC-CEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 37899999999999999999999999 9999997754332222222221 2468999999998632 2
Q ss_pred CccEEEEccCCCC--ccc----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPAS--PIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~--~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||... ... ..++.+..+++|+.++..+++++ ++.+. +||++||...++.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------ 152 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA------------ 152 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC------------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc------------
Confidence 7999999999422 111 12334677899999999999987 55565 8999999854421
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
.+..+.+.|+.+|...+.+.+.++.+ +|+++++++||.++++...
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 200 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKE 200 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGS
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccch
Confidence 12334468999999999999999877 5899999999999987544
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-21 Score=154.41 Aligned_cols=165 Identities=15% Similarity=0.056 Sum_probs=125.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
..++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+.++++|+++...
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAG-ARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999 999999984332222222221 12468889999998632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++++..+++|+.++..+.+++.. .+. +||++||...+.
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~-------------- 167 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL-------------- 167 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC--------------
Confidence 279999999997654322 233567789999999999776543 344 899999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|++++.++||.+.++.
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 212 (271)
T 4ibo_A 168 --ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDM 212 (271)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcc
Confidence 2334467999999999999999876 58999999999998874
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=149.46 Aligned_cols=161 Identities=14% Similarity=-0.021 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.. .+....+.. ..++.++.+|+++... .+
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAG-ANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 99999998543 222222221 2457888999998632 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||....... .++++..+++|+.++..+.++ +++.+. +||++||...+..
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 144 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG--------------- 144 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC---------------
Confidence 9999999997543221 233457789999977666665 456665 8999999876532
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 188 (255)
T 2q2v_A 145 -STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPL 188 (255)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHH
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcc
Confidence 1234679999999999999998774 8999999999999874
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=149.12 Aligned_cols=170 Identities=12% Similarity=-0.025 Sum_probs=123.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C-
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I- 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~- 96 (228)
++|+++||||+|+||++++++|++.|. ++|++++|+..... .+... ...++.++.+|+++... .
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~-~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT-ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH-HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH-HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999985 79999999543332 22222 23578999999998632 1
Q ss_pred -CccEEEEccCCCC-cccc----cCCchhhHHhhHHHHHHHHHHHHH----c------C------CeEEEEccceeccCC
Q 027129 97 -EVDQIYHLACPAS-PIFY----KYNPVKTIKTNVIGTLNMLGLAKR----V------G------ARILLTSTSEVYGDP 154 (228)
Q Consensus 97 -~~D~vi~~a~~~~-~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~------~------~r~i~~Ss~~~y~~~ 154 (228)
++|+|||+||... .... .++.+..+++|+.++.++++++.. . + .+||++||...+...
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 7999999999765 2211 133456789999999998887643 2 3 489999998765332
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 155 ~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.. +. .+..+...|+.+|...+.+++.++.++ ++++++++||.+.++..
T Consensus 160 ~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 210 (250)
T 1yo6_A 160 NT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG 210 (250)
T ss_dssp CC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----
T ss_pred cc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCC
Confidence 10 11 222455789999999999999998775 89999999999988753
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=149.57 Aligned_cols=163 Identities=10% Similarity=-0.004 Sum_probs=123.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++++|+++... .+
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR 83 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999 9999999943322222222211 2468889999998632 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH-----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA-----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~-----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||........ ++++..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 148 (257)
T 3imf_A 84 IDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD--------------- 148 (257)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc---------------
Confidence 99999999975432222 334677899999999999887 33333 899999987652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 149 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~ 194 (257)
T 3imf_A 149 -AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTG 194 (257)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCc
Confidence 2223467999999999999988754 48999999999999875
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=153.24 Aligned_cols=164 Identities=15% Similarity=0.047 Sum_probs=125.1
Q ss_pred cCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+ |+||++++++|+++| ++|++++|+.. ..+....+.. ...+.++.+|+++...
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 347899999999 999999999999999 99999999542 1122222211 1237888999998632
Q ss_pred -CCccEEEEccCCCCc----c----cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASP----I----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~----~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 152 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------- 152 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC-----------
Confidence 268999999997542 1 122345678899999999999998764 23899999976542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 153 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 198 (261)
T 2wyu_A 153 -----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAA 198 (261)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchh
Confidence 22234579999999999999998775 89999999999999754
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=152.65 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=121.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ...++.++++|+++...
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 90 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 90 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999 999999994322211111111 13468889999998632
Q ss_pred CCccEEEEccCCCCc-ccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASP-IFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~-~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||.... ... .++.+..+++|+.++..+.++ +++.+. +||++||...+.
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 157 (267)
T 1iy8_A 91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------- 157 (267)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc-------------
Confidence 268999999997543 111 133467789999888866654 444554 999999987642
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 158 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 202 (267)
T 1iy8_A 158 ---GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM 202 (267)
T ss_dssp ---BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcc
Confidence 2223467999999999999998876 48999999999998863
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=153.42 Aligned_cols=165 Identities=10% Similarity=0.031 Sum_probs=123.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCcccC-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLI----------- 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~----------- 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++.+|+++....
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNG-ARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG 84 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999 9999999943222111111111 22688899999986321
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||....... .++++..+++|+.++..+.+++ ++.+. +||++||...+..
T Consensus 85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (260)
T 2z1n_A 85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRP-------------- 150 (260)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCC--------------
Confidence 49999999997543221 1334677899999997766654 44555 8999999876632
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
......|+.+|...+.+.+.++.++ |+++++++||.++++...
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 196 (260)
T 2z1n_A 151 --WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVR 196 (260)
T ss_dssp --CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhh
Confidence 2234679999999999999988765 899999999999987543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=152.19 Aligned_cols=164 Identities=18% Similarity=0.090 Sum_probs=122.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~------------ 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+ .....+.++.+|+++...
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 97 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 447999999999999999999999999 99999999432211111111 012467888999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEcccee-ccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV-YGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++.++++++. +.+. +||++||..+ +
T Consensus 98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------- 163 (267)
T 1vl8_A 98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-------------- 163 (267)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--------------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc--------------
Confidence 2799999999976432222 2345678999999999988763 3444 8999999862 2
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+......|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 164 --~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 209 (267)
T 1vl8_A 164 --VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 209 (267)
T ss_dssp --CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTT
T ss_pred --cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccc
Confidence 12223467999999999999998876 48999999999998764
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=152.83 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=121.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ..++.++++|+++... .++
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 99999998432211111122 2468889999998642 258
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|++||+||........ ++++..+++|+.++..+.+++ ++.+.+||++||...+. +.
T Consensus 82 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 145 (253)
T 1hxh_A 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------PI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------CC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC----------------CC
Confidence 9999999976432222 334567899998887776654 33345899999987653 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---h--CCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---H--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~--~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.++.+ + ++++++++||.++++.
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~ 190 (253)
T 1hxh_A 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM 190 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCch
Confidence 23467999999999999998876 3 8999999999999874
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=150.68 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=121.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+....++.++.+|+++... .++
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999 99999999432211111222222478899999998632 259
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|+|||+||........ ++++..+++|+.++..+.+.+ ++.+ .+||++||...+..
T Consensus 84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 148 (251)
T 1zk4_A 84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG--------------- 148 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC---------------
Confidence 9999999975432222 234567899999877766654 4444 38999999876632
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHH-----HhCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHR-----QHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~-----~~~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...+.+.+.++. .++++++++||+.++++.
T Consensus 149 -~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~ 194 (251)
T 1zk4_A 149 -DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPL 194 (251)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHH
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchh
Confidence 22346799999999999998775 348999999999999874
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=151.69 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++... .
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 88 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAG-ASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG 88 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999 999999994332222112211 13468889999998642 2
Q ss_pred CccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||........ ++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 152 (256)
T 3gaf_A 89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN---------------- 152 (256)
T ss_dssp CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC----------------
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC----------------
Confidence 799999999976543322 3346778999999999999863 4444 899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.++ |++++.++||.+.++.
T Consensus 153 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 197 (256)
T 3gaf_A 153 TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDA 197 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCch
Confidence 23344679999999999999998774 8999999999998863
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=151.55 Aligned_cols=154 Identities=21% Similarity=0.125 Sum_probs=120.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|+++| ++|++++|......+ .....+|+++... .+
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~----------~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 94 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAAG-ARVAVADRAVAGIAA----------DLHLPGDLREAAYADGLPGAVAAGLGR 94 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECSSCCTTSCC----------SEECCCCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHh----------hhccCcCCCCHHHHHHHHHHHHHhcCC
Confidence 347899999999999999999999999 999999985433221 1334678877532 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++.+..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 158 (266)
T 3uxy_A 95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR---------------- 158 (266)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence 99999999986543322 334567889999999999987 45555 899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 159 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 203 (266)
T 3uxy_A 159 PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPM 203 (266)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchH
Confidence 23344679999999999999998775 8999999999998863
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=151.42 Aligned_cols=163 Identities=17% Similarity=0.042 Sum_probs=123.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+..+.+|+++... .+
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 91 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDG-AHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG 91 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 999999994322111111111 12467888999988632 27
Q ss_pred ccEEEEccCCCCc-cc----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||.... .. ..++++..+++|+.++.++++++. +.+. +||++||...|.
T Consensus 92 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 156 (260)
T 2zat_A 92 VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH--------------- 156 (260)
T ss_dssp CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC---------------
Confidence 9999999996531 11 112345778999999988888764 4555 899999997763
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.++ |+++++++||.+.++.
T Consensus 157 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 201 (260)
T 2zat_A 157 -PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNF 201 (260)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSST
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCcc
Confidence 22334679999999999999998764 8999999999998874
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=153.00 Aligned_cols=167 Identities=17% Similarity=0.057 Sum_probs=120.2
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh-hhc-CCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWI-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~----------- 95 (228)
+.++++++||||+|+||++++++|+++| ++|+++.+......+... .+. ....+.++.+|+++...
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQG-WRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ 101 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3446899999999999999999999999 999887432222112111 111 13478899999998632
Q ss_pred -CCccEEEEccCCCCc-cc----ccCCchhhHHhhHHHHHHHHHHHHHc-------CC-eEEEEccceeccCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAKRV-------GA-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||.... .. ..++.+..+++|+.++..+++++... +. +||++||...+...
T Consensus 102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 174 (272)
T 4e3z_A 102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS------- 174 (272)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC-------
T ss_pred CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC-------
Confidence 279999999997653 11 12335678899999999998877543 23 89999998765321
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.++ |+++++++||.++++..
T Consensus 175 --------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 219 (272)
T 4e3z_A 175 --------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLH 219 (272)
T ss_dssp --------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----
T ss_pred --------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcc
Confidence 1123569999999999999998775 89999999999998753
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=149.17 Aligned_cols=152 Identities=17% Similarity=0.107 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+... ..++.++++|+++... .++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 75 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEG-SKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGSI 75 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 999999995433 1357888999998632 269
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .+++...+++|+.++..+++++.. .+. +||++||...+. +
T Consensus 76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 139 (264)
T 2dtx_A 76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI----------------I 139 (264)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc----------------C
Confidence 999999997643321 233567889999999888887754 343 899999987653 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhC--CcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~~--i~~~ilRp~~i~G~ 209 (228)
..+...|+.+|...+.+.+.++.+++ +++++++||.+.++
T Consensus 140 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~ 181 (264)
T 2dtx_A 140 TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTP 181 (264)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCc
Confidence 22346799999999999999988765 99999999999775
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=149.74 Aligned_cols=162 Identities=11% Similarity=0.017 Sum_probs=117.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhc-CCCceEE-EeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFEL-IRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~-~~~d~~~~~~------------~ 96 (228)
||+++||||+|+||++++++|+++| ++|+++ +|+.....+....+. ....+.. +.+|+++... .
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G-~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDG-FALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999 999998 773221111111111 1234555 8899998632 3
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||....... .++.+..+++|+.++.++.+ .+++.+. +||++||...+..
T Consensus 80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 145 (245)
T 2ph3_A 80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILG-------------- 145 (245)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccC--------------
Confidence 79999999997643221 23345778999999555554 4555665 8999999864421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...+.+.+.++.++ +++++++||+.++++.
T Consensus 146 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 189 (245)
T 2ph3_A 146 --NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEM 189 (245)
T ss_dssp --CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcc
Confidence 1123679999999999999988765 8999999999999874
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=147.14 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=121.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+... .+.... .. . .++++|+++... .++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~-~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG-KEVAEA-IG--G-AFFQVDLEDERERVRFVEEAAYALGRV 78 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH-HHHHHH-HT--C-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChhH-HHHHHH-hh--C-CEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 999999996544 222222 22 3 788899998632 269
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++++..+++|+.++.++++++.. .+. +||++||...+. +
T Consensus 79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------~ 142 (256)
T 2d1y_A 79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------A 142 (256)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------B
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC----------------C
Confidence 9999999976543222 23457789999999999887643 444 899999986542 1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.++ ++++++++||.+.++
T Consensus 143 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 185 (256)
T 2d1y_A 143 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE 185 (256)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCc
Confidence 2234679999999999999998764 899999999999875
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=153.60 Aligned_cols=164 Identities=16% Similarity=0.075 Sum_probs=124.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|......+.. ..+. ...++.++.+|+++...
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 347899999999999999999999999 99999988322111111 1111 13468889999998632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceec-cCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY-GDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y-~~~~~~~~~e~~~~~~ 167 (228)
.++|+|||+||....... .++++..+++|+.++.++++++.+. +.+||++||...+ ..
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 163 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG-------------- 163 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS--------------
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCC--------------
Confidence 279999999997543221 1234577899999999999988764 3489999998776 32
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...|.+++.++.++ ++++++++||.++++.
T Consensus 164 --~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~ 207 (274)
T 1ja9_A 164 --IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDM 207 (274)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence 1223579999999999999998775 8999999999998864
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=148.02 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=112.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|+++ .|......+....+. ...++.++++|+++... .
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G-~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMG-ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999 999999 453221111111111 13468899999998642 2
Q ss_pred CccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccce-eccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE-VYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~-~y~~~~~~~~~e~~~~~ 166 (228)
++|+|||+||...... ..++++..+++|+.++.++++++.. .+. +||++||.. .|+.
T Consensus 83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 149 (247)
T 2hq1_A 83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------------- 149 (247)
T ss_dssp CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC-------------
Confidence 7999999999754321 2345678899999998888877643 455 899999974 3431
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
...+.|+.+|...+.+.+.++.++ ++++++++|+.+.++
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~ 191 (247)
T 2hq1_A 150 ----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTD 191 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecc
Confidence 123579999999999999988764 899999999999875
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=150.76 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=123.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC-CCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~-~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+ .....+....+. ...++.++.+|+++... .
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAG-AKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG 84 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 999999996 332222112211 12468899999998632 1
Q ss_pred CccEEEEccCC-CCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC------CeEEEEccceeccCCCCCCCCC
Q 027129 97 EVDQIYHLACP-ASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG------ARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 97 ~~D~vi~~a~~-~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~------~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
++|+|||+||. ....... ++.+..+++|+.++.++++++. +.+ .+||++||...+..
T Consensus 85 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 156 (258)
T 3afn_B 85 GIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG-------- 156 (258)
T ss_dssp SCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC--------
T ss_pred CCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC--------
Confidence 79999999996 3222111 2245678999999998888653 222 48999999866531
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++.++ +++++++||+.++++...
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~ 203 (258)
T 3afn_B 157 -------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHA 203 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGT
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccc
Confidence 12234679999999999999988765 899999999999998644
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=145.62 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=121.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----------cCCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~D~ 100 (228)
+|+++||||+|+||++++++|+++| ++|++++|+..+ ..+.. .+..+++|+++.. +.++|+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G-~~V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~ 73 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHV 73 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCE
Confidence 5899999999999999999999999 999999995322 22212 2678889998721 126999
Q ss_pred EEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 101 vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+||+||....... .++++..+++|+.++..+.+++. +.+. +||++||...+... ...
T Consensus 74 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~~ 139 (239)
T 2ekp_A 74 LVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GPV 139 (239)
T ss_dssp EEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TTS
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CCC
Confidence 9999997543221 23356778999999998888763 4455 89999998776421 113
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+.+.|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 140 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 181 (239)
T 2ekp_A 140 PIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEF 181 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCch
Confidence 34679999999999999998774 8999999999998874
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=151.79 Aligned_cols=166 Identities=17% Similarity=0.100 Sum_probs=125.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++++++||||+|+||++++++|+++| ++|++++|+.....+....+.. ...+.++++|+++... .+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADG-VTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH 105 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46799999999999999999999999 9999999943322222222221 2468889999998632 27
Q ss_pred ccEEEEccCCCCc-cc----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||.... .. ..++++..+++|+.++..+++++ ++.+. +||++||...+..
T Consensus 106 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~-------------- 171 (283)
T 3v8b_A 106 LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT-------------- 171 (283)
T ss_dssp CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB--------------
T ss_pred CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC--------------
Confidence 9999999997532 11 11334677899999999999887 45555 8999999865421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.+..+...|+.+|...+.+.+.++.+ +|+++++++||.+..+..
T Consensus 172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 218 (283)
T 3v8b_A 172 FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNIS 218 (283)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTT
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcc
Confidence 12223467999999999999999887 489999999999988753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-21 Score=153.36 Aligned_cols=164 Identities=18% Similarity=0.100 Sum_probs=122.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC-CCCchhhhhh--cCCCceEEEeccCCC----ccc-------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKW--IGHPRFELIRHDVTE----PLL------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~--~~~~~~~~~~~d~~~----~~~------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+. ....+....+ ....++.++++|+++ ...
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~ 99 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS 99 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence 347899999999999999999999999 9999999954 2211111111 113468899999998 421
Q ss_pred -----CCccEEEEccCCCCcccc-----c---------CCchhhHHhhHHHHHHHHHHHHH----cC------C-eEEEE
Q 027129 96 -----IEVDQIYHLACPASPIFY-----K---------YNPVKTIKTNVIGTLNMLGLAKR----VG------A-RILLT 145 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~-----~---------~~~~~~~~~n~~~~~~l~~~~~~----~~------~-r~i~~ 145 (228)
.++|++||+||....... . ++.+..+++|+.++..+++++.. .+ . +||++
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i 179 (288)
T 2x9g_A 100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL 179 (288)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence 279999999997643222 1 22356789999999999887653 22 3 89999
Q ss_pred ccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 146 Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
||...+. +......|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 180 sS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 231 (288)
T 2x9g_A 180 CDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV 231 (288)
T ss_dssp CCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT
T ss_pred ecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc
Confidence 9987652 22334679999999999999988764 8999999999999986
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=149.68 Aligned_cols=169 Identities=21% Similarity=0.045 Sum_probs=127.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
..++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++...
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 107 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAG-AQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL 107 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3457999999999999999999999999 999999995443322222221 12468889999998642
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++.+..+++|+.++..+++++.. .+ .+||++||...+..
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~------------ 175 (276)
T 3r1i_A 108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII------------ 175 (276)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc------------
Confidence 2799999999986543322 23456678999999999887643 33 38999999865422
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
....+.+.|+.+|...+.+.+.++.+ +++++++++||.|..+...
T Consensus 176 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~ 223 (276)
T 3r1i_A 176 --NIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVE 223 (276)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTG
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccc
Confidence 12223467999999999999999887 5899999999999887543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=153.29 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=123.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CC---ceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~---------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. .. ++.++.+|+++...
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999 9999999943222211122111 12 68899999998632
Q ss_pred --CCccEEEEccCCCCccc--c----cCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIF--Y----KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~--~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||...... . .++++..+++|+.++.++++++.. .+.+||++||...+...
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~--------- 173 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA--------- 173 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC---------
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC---------
Confidence 27999999999754322 1 133457889999999999887654 33589999998765321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 174 ------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~ 217 (297)
T 1xhl_A 174 ------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGF 217 (297)
T ss_dssp ------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSH
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcc
Confidence 023467999999999999998865 58999999999998864
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=151.42 Aligned_cols=164 Identities=16% Similarity=0.033 Sum_probs=123.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CC---ceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~d~~~~~~----------- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. .. .+.++.+|+++...
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999999 9999999943222221122211 12 68899999998632
Q ss_pred -CCccEEEEccCCCCccc----c----cCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF----Y----KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~----~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||...... . .++++..+++|+.++.++++++.. .+.+||++||...+...
T Consensus 84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 155 (280)
T 1xkq_A 84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA-------- 155 (280)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC--------
T ss_pred cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC--------
Confidence 26999999999764322 1 123467789999999999987654 23589999998765321
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 156 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 199 (280)
T 1xkq_A 156 -------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGF 199 (280)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSH
T ss_pred -------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCc
Confidence 123467999999999999998865 48999999999999874
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=148.67 Aligned_cols=158 Identities=15% Similarity=-0.019 Sum_probs=114.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+++||||+|+||++++++|+++| ++|++++|+. +....... ..++.++.+|+++... .++
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKG-YRVGLMARDE----KRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGEL 79 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999 9999999942 22222111 1267888999998632 268
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHH----HHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||....... .++.+..+++|+.++..+++. +++.+. +||++||...+. +
T Consensus 80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~ 143 (234)
T 2ehd_A 80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------------P 143 (234)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------------C
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------------C
Confidence 999999997543221 133456789999999766554 455555 899999987653 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.+.|+.+|...+.+.+.++.+ +|++++++|||.+..+.
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 187 (234)
T 2ehd_A 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGF 187 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCc
Confidence 233467999999999999888765 48999999999997753
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.9e-21 Score=151.68 Aligned_cols=163 Identities=13% Similarity=-0.005 Sum_probs=125.5
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
.+|+++||||+ |+||++++++|+++| ++|++++|+.. ..+....+.. ...+.++.+|+++...
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 47899999999 999999999999999 99999999653 2223332211 1237788999998632
Q ss_pred CCccEEEEccCCCCc--------ccccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||.... ....++++..+++|+.++..+++++... +.+||++||...+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 150 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------------
Confidence 268999999997643 1112345678899999999999998765 34899999976542
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.+.++..
T Consensus 151 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 196 (275)
T 2pd4_A 151 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS 196 (275)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchh
Confidence 22234579999999999999998775 89999999999998753
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=150.86 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=122.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+....++.++.+|+++... .+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAG-ARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSAR 105 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 347899999999999999999999999 99999999432222222222222367888999998632 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC-----CeEEEEccceeccCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG-----ARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~-----~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
+|++||+||....... .++++..+++|+.++..+++++. +.+ .+||++||...+...
T Consensus 106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~---------- 175 (276)
T 2b4q_A 106 LDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM---------- 175 (276)
T ss_dssp CSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC----------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC----------
Confidence 9999999997654222 22345788999999988877653 333 389999998765321
Q ss_pred CCCCCCCCCC-hHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRS-CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~-~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.... .|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 176 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~ 219 (276)
T 2b4q_A 176 ------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219 (276)
T ss_dssp ------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTT
T ss_pred ------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcc
Confidence 1123 6999999999999998876 48999999999998864
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=152.04 Aligned_cols=162 Identities=11% Similarity=-0.011 Sum_probs=118.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+..... ...+.++++|+++... .+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999 99999998432222211221 2468899999998642 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||....... .++++..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~---------------- 165 (266)
T 3grp_A 102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV---------------- 165 (266)
T ss_dssp CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC--------------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC----------------
Confidence 9999999997653322 2345677899999977766654 44555 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+.++.
T Consensus 166 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~ 210 (266)
T 3grp_A 166 GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAM 210 (266)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCch
Confidence 22234679999999999999988764 8999999999998864
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=150.68 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=125.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ...++.++++|+++...
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 96 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF 96 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 347999999999999999999999999 999999994332222222221 13578899999998743
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++..+.+++.. .+ . +||++||...+.
T Consensus 97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 163 (266)
T 4egf_A 97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------- 163 (266)
T ss_dssp TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-------------
Confidence 2799999999986543322 23456789999999999887643 33 3 899999987652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|++++.++||.+..+.
T Consensus 164 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 208 (266)
T 4egf_A 164 ---PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEM 208 (266)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHH
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCch
Confidence 2333467999999999999999877 48999999999998763
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=150.87 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=125.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-Cchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|.... ..+...... ...++.++++|+++...
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999 999999884221 111121111 13468889999998642
Q ss_pred CCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+||...... ..++++..+++|+.++.++++++...- .+||++||...+.
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~--------------- 191 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ--------------- 191 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS---------------
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc---------------
Confidence 37999999999754211 123456788999999999999987642 3899999997763
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.|+++.
T Consensus 192 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~ 236 (294)
T 3r3s_A 192 -PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTAL 236 (294)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCcccc
Confidence 22334679999999999999998875 8999999999999864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=149.21 Aligned_cols=164 Identities=15% Similarity=0.036 Sum_probs=125.3
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+ |+||++++++|+++| ++|++++|+. ...+....+.. .....++++|+++...
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36899999999 999999999999999 9999999965 33233332211 1234778899998632
Q ss_pred CCccEEEEccCCCCc----c-----cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASP----I-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~----~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence 268999999997542 1 122345678899999999999998764 23899999986652
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.++++...
T Consensus 155 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 201 (265)
T 1qsg_A 155 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS 201 (265)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGG
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhh
Confidence 22234579999999999999998775 899999999999998643
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=147.99 Aligned_cols=163 Identities=17% Similarity=0.100 Sum_probs=127.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc-----------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-----------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~-----------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+..+++|+++... .+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 457999999999999999999999999 999999996655444333322 23568899999998742 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++.+..+++|+.++.++++++ ++.+. +||++||...+.
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 173 (275)
T 4imr_A 110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR---------------- 173 (275)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC----------------
Confidence 99999999975543222 334567899999999998876 33454 899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+..+.+.|+.+|...+.+.+.++.++ |+++++++||.+..+
T Consensus 174 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 217 (275)
T 4imr_A 174 PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTD 217 (275)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCc
Confidence 22334569999999999999998775 899999999999876
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=150.38 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=125.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----------- 95 (228)
..++|+++||||+|+||++++++|+++| ++|++++|......+...... ....+.++++|+++...
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAG-AKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999 999998884332222222111 13468889999998642
Q ss_pred -CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 170 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM------------- 170 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-------------
Confidence 279999999998654322 23456788999999999988763 3444 899999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.++++..
T Consensus 171 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~ 216 (269)
T 4dmm_A 171 ---GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT 216 (269)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCS
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccc
Confidence 1223467999999999999998876 489999999999998753
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=147.35 Aligned_cols=156 Identities=19% Similarity=0.097 Sum_probs=123.1
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 96 (228)
..++|+++||||+|+||++++++|+++| ++|++++|+..... .....+++|+++... .
T Consensus 11 ~~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSDV---------NVSDHFKIDVTNEEEVKEAVEKTTKKYG 80 (269)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCC--CT---------TSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhcc---------CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4558999999999999999999999999 99999999543321 246778899998632 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ ++.+..+++|+.++..+++++. +.+. +||++||...|.
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 145 (269)
T 3vtz_A 81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA--------------- 145 (269)
T ss_dssp CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc---------------
Confidence 799999999976543322 2345678899999999988754 3454 899999997763
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ ++++++++||.++++.
T Consensus 146 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~ 189 (269)
T 3vtz_A 146 -ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPM 189 (269)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHH
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcc
Confidence 22334679999999999999999887 8999999999998863
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=153.31 Aligned_cols=165 Identities=14% Similarity=0.033 Sum_probs=121.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+|+++||||+|+||++++++|++.| ++|++++|+.....+....+.. ..++.++.+|+++... .
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999999 9999988742221111122211 2468889999998632 3
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||....... .++.+..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------------- 186 (285)
T 2c07_A 121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG-------------- 186 (285)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------------
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC--------------
Confidence 69999999997643222 13345778999999888777664 4455 8999999865432
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
......|+.+|...+.+.+.++.+. |+++++++||.++++..
T Consensus 187 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 231 (285)
T 2c07_A 187 --NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT 231 (285)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCch
Confidence 1223579999999999999988764 89999999999998753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-21 Score=148.48 Aligned_cols=161 Identities=14% Similarity=0.032 Sum_probs=121.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+..... . ..+.++.+|+++... .++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 78 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQQELLL-G-NAVIGIVADLAHHEDVDVAFAAAVEWGGLP 78 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH-G-GGEEEEECCTTSHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh-c-CCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999 99999999433222222222 1 258899999998632 268
Q ss_pred cEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 99 D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|++||+||...... ..++++..+++|+.++..+++++.. .+.+||++||...+. +.
T Consensus 79 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~ 142 (235)
T 3l6e_A 79 ELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------GK 142 (235)
T ss_dssp SEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------SC
T ss_pred cEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------CC
Confidence 99999999754322 2234567889999999999888743 222899999986542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.++.++ |++++.++||.+..+.
T Consensus 143 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 185 (235)
T 3l6e_A 143 ANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEF 185 (235)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcc
Confidence 233679999999999999998864 7999999999997764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=147.71 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=120.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..... ....++.+|+++... .
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g 71 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQGS 71 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 36899999999999999999999999 99999999644322 135667888887531 3
Q ss_pred CccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||....... .++.+..+++|+.++..+++++... +.+||++||...+.
T Consensus 72 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------- 135 (236)
T 1ooe_A 72 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------------- 135 (236)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------------
Confidence 79999999997543222 2334677899999999999988763 23899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~~ 210 (228)
+..+...|+.+|...+.+.+.++.++ |+++++++||.++++.
T Consensus 136 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~ 182 (236)
T 1ooe_A 136 PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM 182 (236)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc
Confidence 22334679999999999999998765 4999999999998863
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=155.68 Aligned_cols=147 Identities=17% Similarity=0.235 Sum_probs=113.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh--hcCCCceEEEeccCCCcc-----cC--CccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPL-----LI--EVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~-----~~--~~D~v 101 (228)
++|+|+|||||||||++++++|++.| ++|++++|......+.... .....+++++.+|+++.. +. ++|+|
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 36899999999999999999999999 9999999965443333321 112357899999999863 33 89999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHh
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG 179 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~s 179 (228)
||+++. .|+.+..+++++|++.+ + +||+ | +||.. .+|. .+..+...|+.+
T Consensus 88 i~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~e~-----~~~~p~~~y~~s 139 (346)
T 3i6i_A 88 VSTVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGHD----VNRA-----DPVEPGLNMYRE 139 (346)
T ss_dssp EECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSSC----TTTC-----CCCTTHHHHHHH
T ss_pred EECCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCCC----CCcc-----CcCCCcchHHHH
Confidence 999974 27788899999999999 7 6664 4 35432 3333 455667889999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
|..+|++++. ++++++++||+.+||..
T Consensus 140 K~~~e~~l~~----~g~~~tivrpg~~~g~~ 166 (346)
T 3i6i_A 140 KRRVRQLVEE----SGIPFTYICCNSIASWP 166 (346)
T ss_dssp HHHHHHHHHH----TTCCBEEEECCEESSCC
T ss_pred HHHHHHHHHH----cCCCEEEEEeccccccc
Confidence 9999998865 58999999999999965
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=146.39 Aligned_cols=152 Identities=20% Similarity=0.143 Sum_probs=120.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~D~ 100 (228)
+|+++||||+|+||++++++|+++| ++|++++|+.. . ..+.++++|+++... .++|+
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~--~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~ 69 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE--G---------EDLIYVEGDVTREEDVRRAVARAQEEAPLFA 69 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC--S---------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEccCcc--c---------cceEEEeCCCCCHHHHHHHHHHHHhhCCceE
Confidence 5899999999999999999999999 99999999543 1 135788899998632 27899
Q ss_pred EEEccCCCCcccccC--------CchhhHHhhHHHHHHHHHHHHHc----C------C-eEEEEccceeccCCCCCCCCC
Q 027129 101 IYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 101 vi~~a~~~~~~~~~~--------~~~~~~~~n~~~~~~l~~~~~~~----~------~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
+||+||......... +.+..+++|+.++.++++++.+. + . +||++||...+..
T Consensus 70 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 141 (242)
T 1uay_A 70 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG-------- 141 (242)
T ss_dssp EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC--------
T ss_pred EEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC--------
Confidence 999999765432211 45677899999999999987642 1 1 8999999987642
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
..+.+.|+.+|...+.+.+.++.+. |++++++||+.++++..
T Consensus 142 --------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~ 186 (242)
T 1uay_A 142 --------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLL 186 (242)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHH
T ss_pred --------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhh
Confidence 2234679999999999999988764 89999999999999753
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=152.34 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc------CCCceEEEeccCCCccc---------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~--------- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++...
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 95 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 95 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999 999999994322211111111 13468899999998632
Q ss_pred ---CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc-----CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV-----GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~-----~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|+|||+||........ ++.+..+++|+.++.++++++... +.+||++||...+
T Consensus 96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~------------ 163 (303)
T 1yxm_A 96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA------------ 163 (303)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT------------
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeeccc------------
Confidence 2599999999965432211 234567899999999999987542 2389999998622
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |++++++|||.++|+.
T Consensus 164 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 208 (303)
T 1yxm_A 164 -----GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT 208 (303)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred -----CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccch
Confidence 11223579999999999999998774 8999999999999983
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=149.35 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=124.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ..++..+++|+++... .++
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTGGI 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999999 99999999433222222222 3468899999998642 279
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHH----HHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGL----AKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~----~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++++..+++|+.++.++.++ +++.+ . +||++||...+.
T Consensus 82 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 145 (247)
T 3rwb_A 82 DILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA---------------- 145 (247)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH----------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc----------------
Confidence 9999999976543222 33467889999999999887 55555 3 899999987653
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 146 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~ 190 (247)
T 3rwb_A 146 GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDG 190 (247)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCcc
Confidence 2223467999999999999999877 58999999999998763
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=150.97 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=122.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+||++++++|++.| ++|++++|+.....+....+. ....+.++.+|+++...
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 109 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999 999999994322111111111 11357888999998642
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHH----HHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIG----TLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~----~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|+|||+||........ ++.+..+++|+.+ ++.++..+++.+ .+||++||...+..
T Consensus 110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~----------- 178 (279)
T 1xg5_A 110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV----------- 178 (279)
T ss_dssp CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc-----------
Confidence 2699999999976433222 2345678999999 666677777766 48999999876532
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~~ 210 (228)
.+..+...|+.+|...+.+.+.++.+ .++++++++||.+.++.
T Consensus 179 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~ 226 (279)
T 1xg5_A 179 ---LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQF 226 (279)
T ss_dssp ---CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSH
T ss_pred ---CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchh
Confidence 12334467999999999999988765 37999999999998764
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=149.68 Aligned_cols=162 Identities=14% Similarity=0.025 Sum_probs=120.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|+++| ++|+++ .|+.....+....+. ...++.++++|+++... .+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G-~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999 999985 663221111111111 12467889999998632 26
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||....... .++++..+++|+.++.++++++.+ .+. +||++||...+..
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------- 144 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIG--------------- 144 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC---------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCC---------------
Confidence 9999999997654221 233456789999999999887754 355 8999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.+ .+++++++||+.++++.
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 188 (244)
T 1edo_A 145 -NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDM 188 (244)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHH
T ss_pred -CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccch
Confidence 122367999999999999998876 48999999999999874
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=150.52 Aligned_cols=163 Identities=13% Similarity=0.020 Sum_probs=124.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ ....++..+.+|+++...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999999 99999999433222222222 122358899999998642
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++..+++++.. .+. +||++||...+.
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ------------- 151 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-------------
Confidence 2799999999976543222 33467789999999999998743 333 899999986652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |++++.++||.+.++
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~ 195 (265)
T 3lf2_A 152 ---PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESG 195 (265)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCc
Confidence 22334679999999999999998774 899999999999875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-21 Score=152.76 Aligned_cols=164 Identities=13% Similarity=0.030 Sum_probs=122.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
..+|+++||||+|+||++++++|++.| ++|++++|+.....+....+.. ..++.++.+|+++... .
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 347899999999999999999999999 9999999943221111111111 2468899999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|+|||+||....... .++....+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------------- 173 (272)
T 1yb1_A 108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS-------------- 173 (272)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC--------------
T ss_pred CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC--------------
Confidence 79999999997653322 1234577899999988877765 34555 8999999876532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh------CCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH------GIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~------~i~~~ilRp~~i~G~~ 210 (228)
..+...|+.+|...+.+.+.++.++ |+++++++|+.+.++.
T Consensus 174 --~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~ 220 (272)
T 1yb1_A 174 --VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGF 220 (272)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCS
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Confidence 1233579999999999999988764 8999999999998764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=150.01 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=125.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ...++.++++|+++...
T Consensus 25 l~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 25 LRDKVAFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF 103 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 447999999999999999999999999 999999995332222222221 13468899999998632
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++++..+++|+.++.++.+++.. .+. +||++||...+.
T Consensus 104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 169 (277)
T 4fc7_A 104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-------------- 169 (277)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH--------------
T ss_pred CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence 279999999996543222 234567889999999999998642 333 899999986653
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.|+++.
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~ 214 (277)
T 4fc7_A 170 --GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTE 214 (277)
T ss_dssp --TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSH
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecch
Confidence 22233679999999999999998774 8999999999999863
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-21 Score=153.65 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
+|+|+||||||+||++++++|++.|.++|++++|+..+... ..+ ...+++++.+|+++.. +.++|+|||+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KEL-RLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHH-HHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 58999999999999999999999865899999995443211 111 1236889999999863 347999999997
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.... ...+.|+..+.++++++++.++ +||+.|+..+|+... ..+...|+.+|..+|+
T Consensus 82 ~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~--------------~~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 82 YWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA--------------GRLAAAHFDGKGEVEE 139 (299)
T ss_dssp HHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT--------------TSCCCHHHHHHHHHHH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC--------------CcccCchhhHHHHHHH
Confidence 3211 1235678899999999999988 899988887775321 1123569999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+++. ++++++++||+.+||+.
T Consensus 140 ~~~~----~gi~~~ilrp~~~~~~~ 160 (299)
T 2wm3_A 140 YFRD----IGVPMTSVRLPCYFENL 160 (299)
T ss_dssp HHHH----HTCCEEEEECCEEGGGG
T ss_pred HHHH----CCCCEEEEeecHHhhhc
Confidence 8764 48999999999999974
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=149.24 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=121.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++... .
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999999 999999994332222222221 13468899999998642 2
Q ss_pred CccEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|+|||+||..... . ..++.+..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 171 (262)
T 3rkr_A 106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN-------------- 171 (262)
T ss_dssp CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC--------------
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC--------------
Confidence 699999999973221 1 123346788999999999988754 3444 899999987652
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+++.++.+ .|+++++++||.+..+.
T Consensus 172 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~ 216 (262)
T 3rkr_A 172 --PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEF 216 (262)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCc
Confidence 3334467999999999999998876 48999999999998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=149.75 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=126.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+..... ..++.++++|+++... .++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999 99999999432211111111 2468899999998642 279
Q ss_pred cEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|++||+||....... .++++..+++|+.++..+++++... +.+||++||...+. +..
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 147 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------GHP 147 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------BCT
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------CCC
Confidence 999999997654332 2345677899999999999998764 22899999987653 223
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
..+.|+.+|...+.+.+.++.++ |++++.++||.+..+..
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~ 190 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTK 190 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSST
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccc
Confidence 44679999999999999998874 89999999999998854
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=149.18 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=124.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ...++.++++|+++... .
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999 999999994332222222221 13468899999998642 2
Q ss_pred CccEEEEccCCCCc-cc----ccCCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||.... .. ..++++..+++|+.++.++++++. +.+.+||++||...+.
T Consensus 88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 152 (264)
T 3ucx_A 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH--------------- 152 (264)
T ss_dssp CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC---------------
T ss_pred CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc---------------
Confidence 79999999987422 11 113346778999999999988754 3345999999987652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.|+++.
T Consensus 153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~ 197 (264)
T 3ucx_A 153 -SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGT 197 (264)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHH
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccccc
Confidence 2333467999999999999999877 58999999999998864
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=150.55 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=125.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ...+.++.+|+++... .+
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREG-AKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG 85 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 9999999943322222222211 3468889999998632 27
Q ss_pred ccEEEEccCCCCcc-----cccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||..... ...++++..+++|+.++..+.+++. +.+. +||++||...+..
T Consensus 86 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 151 (280)
T 3tox_A 86 LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA-------------- 151 (280)
T ss_dssp CCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB--------------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC--------------
Confidence 99999999975321 1123456788999999999988764 3344 8999999876521
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.+.++..
T Consensus 152 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~ 197 (280)
T 3tox_A 152 -GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPAN 197 (280)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTS
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchh
Confidence 22334679999999999999998875 89999999999999754
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=148.91 Aligned_cols=166 Identities=17% Similarity=0.087 Sum_probs=125.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC---------Cchhhhh----hc-CCCceEEEeccCCCccc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------SKDNLRK----WI-GHPRFELIRHDVTEPLL 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------~~~~~~~----~~-~~~~~~~~~~d~~~~~~ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|.... ..+.... .. ....+.++++|+++...
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEG-ADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 347899999999999999999999999 999999884221 1222211 11 12468889999998642
Q ss_pred ------------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccC
Q 027129 96 ------------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGD 153 (228)
Q Consensus 96 ------------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~ 153 (228)
.++|++||+||........ ++++..+++|+.++.++++++. +.+ . +||++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 2799999999986543322 3345678899999999988763 333 3 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.++++...
T Consensus 171 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~ 217 (280)
T 3pgx_A 171 ---------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE 217 (280)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC
T ss_pred ---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc
Confidence 2233467999999999999999877 5899999999999998643
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=147.11 Aligned_cols=164 Identities=16% Similarity=0.052 Sum_probs=125.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ......+++|+++... .+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYL--GDNGKGMALNVTNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh--cccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999 99999999432222211222 1256788999998642 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||....... .++++..+++|+.++..+.+++.. .+. +||++||...+.
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 147 (248)
T 3op4_A 84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------------- 147 (248)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC----------------
Confidence 9999999997654322 234567889999999999887643 444 899999986552
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+..+.+.|+.+|...+.+.+.++.++ |+++++++||.+..+...
T Consensus 148 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 194 (248)
T 3op4_A 148 GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK 194 (248)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhh
Confidence 22334679999999999999988764 899999999999887543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-20 Score=144.27 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=121.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||+|+||++++++|+++| ++|++++|+ .+..........+.++.+|+++... .++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIE----EGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 999999994 3333222211137888999998632 259
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++.+..+++|+.++.++.+++.. .+. +||++||...++.
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------------- 142 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN---------------- 142 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC----------------
Confidence 9999999975432222 23456789999999999887754 344 8999999873321
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...+.+.+.++.+ +|+++++++||.+..+..
T Consensus 143 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 186 (245)
T 1uls_A 143 -LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMT 186 (245)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcch
Confidence 12357999999999999998876 489999999999988753
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=146.21 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=119.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
|+++||||+|+||++++++|+++| ++|++++|+.....+....+ . ..+.++.+|+++... .++|+
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 77 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQG-HKVIATGRRQERLQELKDEL-G-DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI 77 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH-C-TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh-c-CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 689999999999999999999999 99999999432211111111 1 368889999998631 26999
Q ss_pred EEEccCCCC-ccc----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPAS-PIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+||+||... ... ..++++..+++|+.++..+.+++. +.+. +||++||...+. +.
T Consensus 78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~ 141 (248)
T 3asu_A 78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY 141 (248)
T ss_dssp EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CC
T ss_pred EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc----------------CC
Confidence 999999753 111 123356788999999998888764 3444 999999987542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYG 208 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G 208 (228)
.....|+.+|...+.+.+.++.+. |+++++++||.+.|
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~g 182 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGG 182 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccccc
Confidence 234679999999999999988764 89999999999995
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=148.61 Aligned_cols=162 Identities=19% Similarity=0.066 Sum_probs=120.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++... .++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999 999999994322111111111 12468889999998632 279
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++++..+++|+.++..+++++. +.+ . +||++||...+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 144 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV---------------- 144 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----------------
Confidence 9999999975432221 2345678999999988877654 334 4 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 145 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 189 (256)
T 1geg_A 145 GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM 189 (256)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch
Confidence 1123357999999999999998876 48999999999998863
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=143.37 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=117.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc------ccCCccEEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH 103 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~D~vi~ 103 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+. +....+ ..+.++ +|+.+. ...++|++||
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~----~~~~~~---~~~~~~-~D~~~~~~~~~~~~~~iD~lv~ 87 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEG-AEVTICARNE----ELLKRS---GHRYVV-CDLRKDLDLLFEKVKEVDILVL 87 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHT---CSEEEE-CCTTTCHHHHHHHSCCCSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCH----HHHHhh---CCeEEE-eeHHHHHHHHHHHhcCCCEEEE
Confidence 447999999999999999999999999 9999999943 333332 245666 887321 1127999999
Q ss_pred ccCCCCccccc----CCchhhHHhhHHHHHHHHH----HHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASPIFYK----YNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 104 ~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~----~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
+||........ ++.+..+++|+.++..+.+ .+++.+. +||++||...|.. .....
T Consensus 88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~~~~ 151 (249)
T 1o5i_A 88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP----------------IENLY 151 (249)
T ss_dssp CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------CTTBH
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCC----------------CCCCc
Confidence 99975433222 2345678899999776655 4455565 9999999987632 22346
Q ss_pred hHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 152 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 190 (249)
T 1o5i_A 152 TSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER 190 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCc
Confidence 7999999999999998876 58999999999999985
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=149.34 Aligned_cols=163 Identities=13% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+.++.+|+++... .+
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 999999994332222122221 12467888999998632 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++++..+++|+.++..+.+++. +.+. +||++||...+.
T Consensus 82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------------- 145 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS---------------- 145 (264)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc----------------
Confidence 99999999976543222 3346778999999998887653 3454 899999987652
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh-CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~-~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ +++++.+.||.|..+.
T Consensus 146 ~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~ 188 (264)
T 3tfo_A 146 VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESEL 188 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC----
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcc
Confidence 22334679999999999999998875 8999999999998764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=147.68 Aligned_cols=164 Identities=16% Similarity=0.065 Sum_probs=124.9
Q ss_pred cCCCEEEEecCcc-hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+| .||++++++|+++| ++|++++|+.....+....+.. ..++.++++|+++...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 98 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4579999999997 69999999999999 9999999953332222222222 2478999999998642
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc-----CC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~-----~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||........ ++.+..+++|+.++.++++++... +. +||++||...+.
T Consensus 99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------ 166 (266)
T 3o38_A 99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR------------ 166 (266)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC------------
T ss_pred hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC------------
Confidence 2789999999976543322 334577899999999999887543 33 899999986552
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 167 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 211 (266)
T 3o38_A 167 ----AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKF 211 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchh
Confidence 3334578999999999999999876 58999999999998875
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-20 Score=145.25 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=119.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+..... .+.++++|+++... .+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAG-DKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999 99999999543221 26788899998632 25
Q ss_pred ccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||...... ..++++..+++|+.++.++++++.. .+. +||++||...+..
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------- 152 (253)
T 2nm0_A 88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG--------------- 152 (253)
T ss_dssp CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC---------------
Confidence 899999999754321 2355678899999999999886543 355 8999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.++ ++++++++||.+..+.
T Consensus 153 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 196 (253)
T 2nm0_A 153 -SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDM 196 (253)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC--
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcc
Confidence 1123579999999999999988764 7999999999997764
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=149.40 Aligned_cols=164 Identities=12% Similarity=-0.019 Sum_probs=124.0
Q ss_pred CCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+ |+||++++++|+++| ++|++++|+.. ..+....+.. ...+.++.+|+++...
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999 999999999999999 99999999542 1122222211 1236788999998632
Q ss_pred CCccEEEEccCCCCc----c----cccCCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASP----I----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~----~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...++.+..+++|+.++.++++++... +.+||++||...+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------- 166 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------- 166 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----------
Confidence 279999999997643 1 112334678899999999999988653 23899999976542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.++++...
T Consensus 167 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 213 (285)
T 2p91_A 167 -----VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAY 213 (285)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC-
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhh
Confidence 22233579999999999999988764 899999999999998643
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=148.83 Aligned_cols=163 Identities=16% Similarity=0.022 Sum_probs=120.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|......+.. ..+. ...++.++++|+++... .
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQG-ANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 99999988322111111 1111 12468889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||....... .++++..+++|+.++..+.+++ ++.+. +||++||...+..
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 147 (246)
T 2uvd_A 82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTG-------------- 147 (246)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCC--------------
Confidence 79999999997643221 1334577899999977776654 44555 8999999865421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 148 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~ 191 (246)
T 2uvd_A 148 --NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDM 191 (246)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGC
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcc
Confidence 112357999999999999988765 48999999999998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=145.98 Aligned_cols=165 Identities=10% Similarity=-0.013 Sum_probs=120.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~-----------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++++|+++... .+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTT-CEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 447899999999999999999999999 9999999954433332222211 3478899999998632 26
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||........ ++.+..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 147 (252)
T 3h7a_A 84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR---------------- 147 (252)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC----------------
T ss_pred ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC----------------
Confidence 89999999976543222 334677899999999888875 44454 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcE-EEeeeccccCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEI-RIARIFNTYGPRM 211 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~-~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ |+++ +++.||.+..+..
T Consensus 148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~ 194 (252)
T 3h7a_A 148 GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWV 194 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhh
Confidence 22334679999999999999998764 8999 8999999987643
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=146.13 Aligned_cols=165 Identities=12% Similarity=0.007 Sum_probs=125.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++.+|+++... .+
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 999999994332222112211 13468899999998632 26
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||....... .++.+..+++|+.++.++++++.. .+. +||++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 146 (247)
T 3lyl_A 83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA---------------- 146 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc----------------
Confidence 8999999998654322 233467889999999999887643 344 899999987653
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.+.++...
T Consensus 147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 193 (247)
T 3lyl_A 147 GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTD 193 (247)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccch
Confidence 2223467999999999999998876 4899999999999987544
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=149.99 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=121.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+. +...... ....+.++++|+++... .+
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDE----SGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 9999999842 2222111 11247889999998642 26
Q ss_pred ccEEEEccCCCCcc-cc----cCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-FY----KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||..... .. .++++..+++|+.++.++++++.. .+.+||++||...+..
T Consensus 83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 147 (270)
T 1yde_A 83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIG--------------- 147 (270)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHC---------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCC---------------
Confidence 99999999975421 11 123467889999999999888753 3459999999854321
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.++++.
T Consensus 148 -~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~ 191 (270)
T 1yde_A 148 -QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPL 191 (270)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHH
T ss_pred -CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccch
Confidence 112357999999999999998866 58999999999999873
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-21 Score=151.92 Aligned_cols=163 Identities=13% Similarity=0.010 Sum_probs=123.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+..+.+|+++... .
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 347899999999999999999999999 999999994322221111111 12367888999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||....... .++++..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 169 (270)
T 3ftp_A 105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA--------------- 169 (270)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC---------------
Confidence 79999999997654322 23356778999999999998764 3344 899999986652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.+..+
T Consensus 170 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~ 213 (270)
T 3ftp_A 170 -GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTD 213 (270)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCc
Confidence 2223467999999999999999877 4899999999999876
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=149.91 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=124.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCC---eEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc--------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~-------- 95 (228)
.++|+++||||+|+||++++++|+++| + +|++++|+.....+....+. ...++.++++|+++...
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G-~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEAS-NGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcC-CCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 347999999999999999999999998 6 99999994332222111111 23568899999998743
Q ss_pred ----CCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCC
Q 027129 96 ----IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||...... ..++++..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 180 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD--------- 180 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC---------
Confidence 26999999999754221 12335678899999999999987 34444 999999986542
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.|..+.
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~ 225 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEF 225 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSH
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcc
Confidence 2233467999999999999999887 48999999999998763
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=153.34 Aligned_cols=176 Identities=18% Similarity=0.131 Sum_probs=130.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC--------chhhhh----h-cCCCceEEEeccCCCccc--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK----W-IGHPRFELIRHDVTEPLL-- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~----~-~~~~~~~~~~~d~~~~~~-- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.... .+.... . ....++.++++|+++...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 47899999999999999999999999 9999999853221 111111 1 123478899999998642
Q ss_pred ----------CCccEEEEccCCCCcc--cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCC
Q 027129 96 ----------IEVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 96 ----------~~~D~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.++|++||+||..... ...++++..+++|+.++.++++++... +.+||++||...+......+..
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~ 167 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPGA 167 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccccccc
Confidence 2799999999976543 122345678999999999999998764 2389999998766433222222
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+. .+..+...|+.+|...+.+.+.++.++ |+++++++||.|.++...
T Consensus 168 ~~-----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 217 (287)
T 3pxx_A 168 GG-----PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLN 217 (287)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTS
T ss_pred cc-----cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccc
Confidence 22 233344679999999999999998875 899999999999987643
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=143.15 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=122.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ...++.++++|+++... .+
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999 999999994322111111111 12468889999998632 27
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|++||+||........ ++.+..+++|+.++.++++++.. .+.+||++||...+. +
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 148 (247)
T 2jah_A 85 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV----------------N 148 (247)
T ss_dssp CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC----------------C
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC----------------C
Confidence 99999999975432222 23456789999999999887643 335899999986552 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 192 (247)
T 2jah_A 149 VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL 192 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSG
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcc
Confidence 223467999999999999998876 48999999999998864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=148.25 Aligned_cols=163 Identities=15% Similarity=0.051 Sum_probs=120.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~---------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+.++++|+++...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999 999999994332222112111 11568889999998632
Q ss_pred --CCccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 150 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY------------- 150 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-------------
Confidence 2699999999976443222 334577899999999998876 33454 899999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+..+.+.|+.+|...+.+.+.++.++ |++++.++||.+..+
T Consensus 151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 194 (250)
T 3nyw_A 151 ---GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD 194 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc
Confidence 12225679999999999999998774 899999999999764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-21 Score=151.23 Aligned_cols=181 Identities=17% Similarity=0.023 Sum_probs=127.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHh-cCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
+++|+++||||+|+||++++++|++ .| ++|++++|+.....+....+.. ..++.++.+|+++...
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999 89 9999999943222221222211 2467889999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCC-----------CC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPL-----------VH 157 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~-----------~~ 157 (228)
.++|+|||+||........ .+.+..+++|+.++.++++++...- .+||++||...+.... ..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~ 160 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE 160 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence 2799999999976433221 3346778999999999999997752 2899999987653200 01
Q ss_pred CCCCCCCC--------------CCCCCCCCChHHHhHHHHHHHHHHHHHH-------hCCcEEEeeeccccCCCC
Q 027129 158 PQDESYWG--------------NVNPIGVRSCYDEGKRVAETLMFDYHRQ-------HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 158 ~~~e~~~~--------------~~~~~~~~~~y~~sK~~~e~~~~~~~~~-------~~i~~~ilRp~~i~G~~~ 211 (228)
.++|+++. ...+..+.+.|+.+|...+.+++.++.+ .++++++++||.+.++..
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~ 235 (276)
T 1wma_A 161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMA 235 (276)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTT
T ss_pred ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcC
Confidence 12221100 0011224478999999999999988766 489999999999988753
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=146.34 Aligned_cols=161 Identities=17% Similarity=0.120 Sum_probs=122.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC--CchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
+|+++||||+|+||++++++|+++| ++|++++|+... ..+....+.. ..++.++++|+++... .
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999 999999985332 1111112211 2468889999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cC--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
++|++||+||....... .++++..+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 146 (258)
T 3a28_C 81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ-------------- 146 (258)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc--------------
Confidence 79999999997643222 233457789999999999887754 23 4899999987652
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ ++++++++||.+..+
T Consensus 147 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 190 (258)
T 3a28_C 147 --GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTG 190 (258)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSH
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCCh
Confidence 22234679999999999999988764 899999999999765
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=149.94 Aligned_cols=170 Identities=19% Similarity=0.091 Sum_probs=128.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC--------Cchhhhhhc-----CCCceEEEeccCCCccc-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRKWI-----GHPRFELIRHDVTEPLL- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~~~~~~-----~~~~~~~~~~d~~~~~~- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+... ..+...... ...++.++++|+++...
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 347999999999999999999999999 999999985221 122221111 12478899999998642
Q ss_pred -----------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCC
Q 027129 96 -----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHP 158 (228)
Q Consensus 96 -----------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~ 158 (228)
.++|++||+||........++++..+++|+.++..+++++. +.+ . +||++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 27999999999865544445567889999999999999763 333 3 899999987553210
Q ss_pred CCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 159 ~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
.+......|+.+|...+.+.+.++.++ |+++++++||.|+++...
T Consensus 167 ---------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 214 (278)
T 3sx2_A 167 ---------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMIN 214 (278)
T ss_dssp ---------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS
T ss_pred ---------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccch
Confidence 122234579999999999999998764 799999999999998654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=148.20 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=117.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~----------- 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++...
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999999 9999999943221111112211 2358889999998632
Q ss_pred -CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHH----HHHHcC---C-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLG----LAKRVG---A-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~----~~~~~~---~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||... ..+++..+++|+.++..+.+ .+++.+ . +||++||...+..
T Consensus 84 ~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 146 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP------------- 146 (267)
T ss_dssp HSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------------
T ss_pred cCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC-------------
Confidence 26899999998643 35567888999986655544 454442 3 8999999876632
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHH--H---HhCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYH--R---QHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~--~---~~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++ . .+|+++++++||.+.++.
T Consensus 147 ---~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~ 192 (267)
T 2gdz_A 147 ---VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI 192 (267)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchh
Confidence 2233579999999999988752 2 358999999999998763
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=145.95 Aligned_cols=166 Identities=16% Similarity=0.090 Sum_probs=123.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh-hhhhc-CCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~d~~~~~~----------- 95 (228)
...+|+++||||+|+||++++++|+++| ++|+++++......+. ..... ....+.++++|+++...
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDG-FRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTT-EEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999 9999988533333222 22221 13468889999998632
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++.+..+++|+.++.++.+++ ++.+. +||++||...+.
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 155 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK------------- 155 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-------------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-------------
Confidence 2799999999976543222 334578899999988887765 44555 899999986652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+..+.+.|+.+|...+.+.+.++.+ .|+++++++||.+.++..
T Consensus 156 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 201 (256)
T 3ezl_A 156 ---GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV 201 (256)
T ss_dssp ---SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccc
Confidence 2334467999999999999998876 489999999999987643
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=148.29 Aligned_cols=162 Identities=18% Similarity=0.122 Sum_probs=108.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++.+|+++... .+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG-AAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG 86 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999 999999994332222222221 13468889999998632 27
Q ss_pred ccEEEEccCCCCcc-------cccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
+|++||+||..... ...++++..+++|+.++..+.+++ ++.+. +||++||...|.
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 153 (253)
T 3qiv_A 87 IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL------------- 153 (253)
T ss_dssp CCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred CCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC-------------
Confidence 99999999974211 112334678899999976666654 44555 899999987652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+.+.|+.+|...+.+.+.++.++ ++++++++||.++++...
T Consensus 154 ------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 197 (253)
T 3qiv_A 154 ------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANR 197 (253)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC---------
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchh
Confidence 12459999999999999998875 799999999999987543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=147.30 Aligned_cols=161 Identities=13% Similarity=0.045 Sum_probs=118.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~D~ 100 (228)
|+++||||+|+||++++++|+++| ++|++++|+.....+....+....++.++++|+++... .++|+
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 100 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG 100 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 899999999999999999999999 99999999432211111122112468889999998632 25899
Q ss_pred EEEccCCCCc-ccc----cCCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASP-IFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 101 vi~~a~~~~~-~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+||+||.... ... .++++..+++|+.++..+.+++. +.+ . +||++||...+. +
T Consensus 101 lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~----------------~ 164 (272)
T 2nwq_A 101 LINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW----------------P 164 (272)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS----------------C
T ss_pred EEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc----------------C
Confidence 9999997542 111 13346678999999888777653 333 4 899999987652 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 165 ~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~ 208 (272)
T 2nwq_A 165 YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEF 208 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcc
Confidence 223467999999999999998865 48999999999998764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=149.28 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=120.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+....+ ..++.++++|+++... .++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 103 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEKFGRV 103 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 99999999432222222222 2468889999998632 279
Q ss_pred cEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHH----HcC---CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 99 D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
|++||+||...+. . ..++++..+++|+.++..+.+++. +.+ .+||++||...+.
T Consensus 104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------------- 169 (272)
T 4dyv_A 104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-------------- 169 (272)
T ss_dssp CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS--------------
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC--------------
Confidence 9999999975431 1 123346788999999888887653 333 3899999986552
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +++++++++||.+..+.
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 214 (272)
T 4dyv_A 170 --PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPM 214 (272)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC---
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChh
Confidence 2334467999999999999999876 48999999999998864
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=148.89 Aligned_cols=163 Identities=15% Similarity=0.023 Sum_probs=116.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|+++| ++|++++|......+.. ..+. ...++.++++|+++... .+
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 107 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASG-FDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGR 107 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999 99999986332221111 1111 13468899999998743 27
Q ss_pred ccEEEEccCCCC--ccc----ccCCchhhHHhhHHHHHHHHHHHHH----cC---C-eEEEEccceeccCCCCCCCCCCC
Q 027129 98 VDQIYHLACPAS--PIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG---A-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 98 ~D~vi~~a~~~~--~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
+|++||+||... ... ..++++..+++|+.++..+++++.. .+ . +||++||...+.
T Consensus 108 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----------- 176 (280)
T 4da9_A 108 IDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM----------- 176 (280)
T ss_dssp CCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---------------
T ss_pred CCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc-----------
Confidence 999999999732 111 1234567789999999988887643 22 3 899999986652
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+.++..
T Consensus 177 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 222 (280)
T 4da9_A 177 -----TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMT 222 (280)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC---
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCch
Confidence 2223367999999999999999877 589999999999988754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-20 Score=146.24 Aligned_cols=167 Identities=19% Similarity=0.095 Sum_probs=125.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++++.....+...... ...++.++++|+++...
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 346899999999999999999999999 999998764322222221111 13468889999998642
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+||....... .++++..+++|+.++..+++++... +.+||++||..... .
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~---------------~ 172 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL---------------V 172 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC---------------C
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc---------------C
Confidence 279999999997654322 2335678899999999999988764 23899999864321 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.|.++...
T Consensus 173 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~ 219 (271)
T 3v2g_A 173 PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNP 219 (271)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccc
Confidence 22344679999999999999998774 899999999999987643
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=146.71 Aligned_cols=171 Identities=21% Similarity=0.160 Sum_probs=121.5
Q ss_pred cchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc-----
Q 027129 23 LRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL----- 95 (228)
Q Consensus 23 ~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~----- 95 (228)
..+..++.++|+++||||+|+||++++++|+++| ++|+++.+......+...... ...++.++++|+++...
T Consensus 18 ~~~~~m~~~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 96 (267)
T 3u5t_A 18 LYFQSMMETNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLF 96 (267)
T ss_dssp ---------CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccccccccCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 3344455567899999999999999999999999 999988553332222222111 13468889999998642
Q ss_pred -------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCC
Q 027129 96 -------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 -------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||........ ++++..+++|+.++.++++++... +.+||++||...+.
T Consensus 97 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 167 (267)
T 3u5t_A 97 ATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL--------- 167 (267)
T ss_dssp HHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH---------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc---------
Confidence 2799999999976543322 224567789999999999887653 23899999986643
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |++++.+.||.+..+.
T Consensus 168 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 212 (267)
T 3u5t_A 168 -------LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDL 212 (267)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC---
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcc
Confidence 22233679999999999999999875 8999999999998764
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=146.05 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=107.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----------cCCcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEVD 99 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~D 99 (228)
++|+++||||+|+||++++++|.+ | +.|++++| ..+..........+.++..|+++.. +.++|
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 4 KKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGR----NPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp --CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEES----CHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeC----CHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 478999999999999999999987 7 89999998 3444433333456888888887641 12699
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++||+||........ ++.+..+++|+.++..+.+++. +.+.+||++||...+. +..
T Consensus 78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 141 (245)
T 3e9n_A 78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG----------------PHP 141 (245)
T ss_dssp EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-------------------------
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc----------------CCC
Confidence 999999976543322 3345778999999888877653 3445899999987663 223
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
..+.|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 142 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 183 (245)
T 3e9n_A 142 GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPM 183 (245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCch
Confidence 3467999999999999999876 48999999999998874
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=146.62 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=123.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+++||||+|+||++++++|+++|. +.|+++.|+.....+..... ..++.++++|+++... .++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 48999999999999999999999852 78888888422211111111 2468899999998642 279
Q ss_pred cEEEEccCCCCc-cc----ccCCchhhHHhhHHHHHHHHHHH----HHcCCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||...+ .. ..++++..+++|+.++..+++++ ++.+.+||++||...+. +
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~----------------~ 143 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM----------------Y 143 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------S
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------C
Confidence 999999997543 11 12334678899999999999887 44456999999987652 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh-CCcEEEeeeccccCCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~-~i~~~ilRp~~i~G~~~~ 212 (228)
....+.|+.+|...+.+.+.++.++ +++++.++||.+..+...
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~ 187 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQV 187 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHH
Confidence 3344679999999999999998875 899999999999987543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=149.05 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=120.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
..+|+++||||+|+||++++++|++.| ++|++++|+..+..+....+. ....+.++.+|+++...
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 104 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999999999999 999999994322211111111 12368889999998532
Q ss_pred CCccEEEEc-cCCCCccccc---CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHL-ACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~-a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+ +|........ ++.+..+++|+.++.++++++.. .+.+||++||...+.
T Consensus 105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------------- 169 (286)
T 1xu9_A 105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------------- 169 (286)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---------------
T ss_pred CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc---------------
Confidence 279999999 5654332222 22356789999999999887643 334899999987552
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~ 209 (228)
+..+.+.|+.+|...+.+.+.++.++ ++++++++||.+..+
T Consensus 170 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~ 215 (286)
T 1xu9_A 170 -AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 215 (286)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh
Confidence 22234679999999999999987765 899999999998775
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=145.86 Aligned_cols=163 Identities=12% Similarity=0.012 Sum_probs=125.5
Q ss_pred CCCEEEEecCcch--hHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||+|+ ||++++++|+++| ++|++++|.. ..+....+. ....+.++.+|+++...
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW 101 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc
Confidence 4689999999966 9999999999999 9999999954 223333332 12357899999998632
Q ss_pred CCccEEEEccCCCCcc---------cccCCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEccceeccCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||..... ...++....+++|+.++.++++++... +.+||++||...+.
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------- 171 (280)
T 3nrc_A 102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---------- 171 (280)
T ss_dssp SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----------
T ss_pred CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----------
Confidence 3689999999976531 122334567899999999999987642 33899999987652
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.+..+...
T Consensus 172 ------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~ 218 (280)
T 3nrc_A 172 ------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAAS 218 (280)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGG
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhh
Confidence 2334467999999999999998876 5899999999999987544
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-20 Score=144.71 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=117.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~D 99 (228)
+|+++||||+|+||++++++|+++| ++|++++|+..+... ..+..|+++.. ..++|
T Consensus 22 ~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~-----------~~~~~d~~d~~~v~~~~~~~~~~~g~iD 89 (251)
T 3orf_A 22 SKNILVLGGSGALGAEVVKFFKSKS-WNTISIDFRENPNAD-----------HSFTIKDSGEEEIKSVIEKINSKSIKVD 89 (251)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCTTSS-----------EEEECSCSSHHHHHHHHHHHHTTTCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcccccc-----------cceEEEeCCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999 999999995443221 23456666642 23689
Q ss_pred EEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 100 ~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
++||+||...... ..++.+..+++|+.++.++++++...- .+||++||...+. +..
T Consensus 90 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 153 (251)
T 3orf_A 90 TFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN----------------RTS 153 (251)
T ss_dssp EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------CCT
T ss_pred EEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------CCC
Confidence 9999999754322 123456778999999999999987642 2899999987652 233
Q ss_pred CCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
....|+.+|...+.+.+.++.+ +++++++++||.+.++
T Consensus 154 ~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~ 196 (251)
T 3orf_A 154 GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP 196 (251)
T ss_dssp TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc
Confidence 4467999999999999999877 5899999999999875
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=149.67 Aligned_cols=165 Identities=18% Similarity=0.046 Sum_probs=126.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC--------Cchhhhh----hc-CCCceEEEeccCCCccc-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRK----WI-GHPRFELIRHDVTEPLL- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~~~~----~~-~~~~~~~~~~d~~~~~~- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+... ..+.+.. +. ...++.++++|+++...
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREG-ADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM 104 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 347999999999999999999999999 999999985321 1222211 11 13468899999998642
Q ss_pred -----------CCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEccceeccC
Q 027129 96 -----------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGD 153 (228)
Q Consensus 96 -----------~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~y~~ 153 (228)
.++|++||+||...... ..++++..+++|+.++..+++++.. .+ . +||++||...+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~- 183 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR- 183 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-
Confidence 27999999999765432 1233567889999999999987643 23 3 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ |++++++.||.|..+..
T Consensus 184 ---------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~ 229 (299)
T 3t7c_A 184 ---------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPML 229 (299)
T ss_dssp ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT
T ss_pred ---------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccc
Confidence 22334679999999999999998775 89999999999998754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=153.96 Aligned_cols=164 Identities=17% Similarity=0.079 Sum_probs=119.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------ 95 (228)
.+++++||||+|+||++++++|++.| ++|++++|+..+..+....+. ....+.++.+|+++...
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999 999999995332222222111 11268899999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc-----------CCeEEEEccceeccCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~-----------~~r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.++|++||+||........ ++.+..+++|+.++.++++++... +.+||++||...+..
T Consensus 86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~------- 158 (319)
T 3ioy_A 86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA------- 158 (319)
T ss_dssp CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC-------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC-------
Confidence 3689999999976443222 335678899999999998876432 237999999876532
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.||...+.+.+.++.+ .|+++++++||.|.++..
T Consensus 159 ---------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 203 (319)
T 3ioy_A 159 ---------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIY 203 (319)
T ss_dssp ---------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC----
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcc
Confidence 223367999999888888777655 389999999999988643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=150.77 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=124.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++++|+++... .+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999 999999994332222222221 13468899999998642 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||....... .++.+..+++|+.++.++++++. +.+ . +||++||...+.
T Consensus 109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 173 (301)
T 3tjr_A 109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV--------------- 173 (301)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS---------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------------
Confidence 9999999997654322 23346788999999999998763 344 3 899999987652
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.||...+.+.+.++.++ |+++++++||.+..+
T Consensus 174 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 217 (301)
T 3tjr_A 174 -PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETK 217 (301)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSS
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccc
Confidence 23344679999999999999988764 899999999999875
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=144.15 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=118.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc---------CCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL---------IEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~---------~~~D~ 100 (228)
||+++||||+|+||++++++|+++| ++|++++|+ .+....... ..++.++.+|+++... ...|+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEG-KATYLTGRS----ESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESC----HHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 5789999999999999999999999 999999994 333222211 2467888999998632 13599
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
+||+||........ ++.+..+++|+.++.++++++... +.+||++||...+. +...
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~ 139 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQ 139 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTT
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCC
Confidence 99999976543322 334567899999999999987542 23899999987652 2334
Q ss_pred CChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
.+.|+.+|...+.+.+.++.++ |++++.+.||.+..+.
T Consensus 140 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 180 (230)
T 3guy_A 140 ESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEF 180 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC----
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChH
Confidence 4679999999999999998875 8999999999998764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=143.51 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=100.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
||+|+||||+|+||++++++|+++|.++|++++|+..+.. .. ....+.++++|+++.. +.++|+|||+++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~----~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~ 97 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH----KP-YPTNSQIIMGDVLNHAALKQAMQGQDIVYANLT 97 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC----SS-CCTTEEEEECCTTCHHHHHHHHTTCSEEEEECC
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc----cc-ccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCC
Confidence 6899999999999999999999998569999999533222 11 1247899999999864 348999999997
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
... ....+.++++++++.+. |||++||..+|+.......... ...+..+...| ..+|.
T Consensus 98 ~~~--------------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~ 156 (236)
T 3qvo_A 98 GED--------------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWN---NAVIGEPLKPF----RRAAD 156 (236)
T ss_dssp STT--------------HHHHHHHHHHHHHHTTCCEEEEECCCCC-------------------CGGGHHH----HHHHH
T ss_pred CCc--------------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccch---hhcccchHHHH----HHHHH
Confidence 421 11345689999999887 8999999999976533222111 00222222334 34444
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
.+ .+++++++++||+.++++.
T Consensus 157 ~l----~~~gi~~~~vrPg~i~~~~ 177 (236)
T 3qvo_A 157 AI----EASGLEYTILRPAWLTDED 177 (236)
T ss_dssp HH----HTSCSEEEEEEECEEECCS
T ss_pred HH----HHCCCCEEEEeCCcccCCC
Confidence 43 3569999999999999874
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=146.80 Aligned_cols=162 Identities=17% Similarity=0.058 Sum_probs=121.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++.+|+++... .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 84 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 84 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999 9999999943221111122211 2368889999998632 27
Q ss_pred ccEEEEccCCC-Cccc----ccCCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPA-SPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~-~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||.. .... ..++++..+++|+.++.++++++.. .+. +||++||...+..
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (262)
T 1zem_A 85 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG-------------- 150 (262)
T ss_dssp CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC--------------
T ss_pred CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC--------------
Confidence 99999999975 2211 1233467789999999999887654 344 8999999876532
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+..+
T Consensus 151 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 151 --PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 122357999999999999998865 4899999999998765
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-20 Score=146.45 Aligned_cols=164 Identities=15% Similarity=0.008 Sum_probs=123.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
+|+++||||+|+||++++++|+++| ++|+++.+..... .+....+. ....+.++.+|+++... .+
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G-~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 104 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADG-FNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA 104 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999 9997765532211 11122221 23578899999998642 27
Q ss_pred ccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH-----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||....... .++.+..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 169 (267)
T 4iiu_A 105 WYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM--------------- 169 (267)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH---------------
T ss_pred ccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc---------------
Confidence 9999999997654322 23456788999999999988763 3444 899999986552
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.+.++...
T Consensus 170 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 216 (267)
T 4iiu_A 170 -GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIE 216 (267)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccc
Confidence 22234679999999999999888764 899999999999987654
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=147.91 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=124.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhc-CCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~d~~~~~~----------- 95 (228)
+..+|+++||||+|+||++++++|+++| ++|+++++......+.. .... ...++.++.+|+++...
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAG-MAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999 99999985332221111 1111 23468899999998642
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++.+..+++|+.++.++++++.. .+. +||++||...+.
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 167 (269)
T 3gk3_A 101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR------------- 167 (269)
T ss_dssp HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-------------
Confidence 2799999999976543322 33467789999999998887643 444 899999986652
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+..+..
T Consensus 168 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 213 (269)
T 3gk3_A 168 ---GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMV 213 (269)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTT
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhh
Confidence 22234679999999999999988764 89999999999988753
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=146.00 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=118.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~ 97 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+..... ...+.++.+|+++... .+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 83 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGG-AKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKFGK 83 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 347899999999999999999999999 99999999433222212221 2468899999998642 27
Q ss_pred ccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHH----c-----CCeEEEEccceeccCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----V-----GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~-----~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
+|++||+||...... ..++.+..+++|+.++.++++++.. . +.+||++||...+.
T Consensus 84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 152 (261)
T 3n74_A 84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR----------- 152 (261)
T ss_dssp CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS-----------
T ss_pred CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC-----------
Confidence 999999999764221 1233456789999999888887642 2 12699999986542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+....+.|+.+|...+.+.+.++.+ +++++++++||.+.++..
T Consensus 153 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 198 (261)
T 3n74_A 153 -----PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLL 198 (261)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhh
Confidence 2233467999999999999999877 489999999999988753
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=142.83 Aligned_cols=163 Identities=14% Similarity=0.027 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~------------~ 96 (228)
+||+++||||+|+||++++++|+++| ++|++++|+..+..+....+ ....++.++++|+++... .
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999 99999999433222222221 113578899999998632 2
Q ss_pred CccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||....... .++.+..+++|+.++.++++++.. .+.++|++||...+.
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~---------------- 143 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR---------------- 143 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------------
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc----------------
Confidence 79999999998654332 233567889999999999988753 344777777765431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH-hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~-~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.+..+ .++++++++||.+..+.
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~ 186 (235)
T 3l77_A 144 LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYF 186 (235)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSST
T ss_pred cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccc
Confidence 1222357999999999999998544 48999999999997754
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=146.56 Aligned_cols=165 Identities=18% Similarity=0.069 Sum_probs=125.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++++.....+...... ...++.++++|+++...
T Consensus 16 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 16 LDGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp CTTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 347999999999999999999999999 999998774332222222111 13468899999998642
Q ss_pred CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+||....... .++++..+++|+.++.++++++...- .+||++||..... .
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------~ 159 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD---------------F 159 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------------C
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------------C
Confidence 279999999998654332 23456778999999999999887642 3899999975211 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +|++++.++||.+..+.
T Consensus 160 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 204 (270)
T 3is3_A 160 SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDM 204 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTT
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChh
Confidence 2334467999999999999999877 48999999999998875
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=144.32 Aligned_cols=155 Identities=17% Similarity=0.060 Sum_probs=119.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------- 95 (228)
+.++|+++||||+|+||++++++|+++| ++|++++|+..... ....++.+|+++...
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3457899999999999999999999999 99999999544322 134667888887521
Q ss_pred -CCccEEEEccCCCCcccc-----cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||....... .++.+..+++|+.++..+++++... +.+||++||...+.
T Consensus 74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 139 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD-------------- 139 (241)
T ss_dssp TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS--------------
T ss_pred CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc--------------
Confidence 379999999997643222 1334567899999999999988763 23899999987653
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.+..+
T Consensus 140 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~ 185 (241)
T 1dhr_A 140 --GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 185 (241)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc
Confidence 22234679999999999999988653 599999999988664
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=142.88 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=115.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
.+|+++||||+|+||++++++|+++| ++|++++|+.....+ +..+++|+++... .++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~~~~g~i 82 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKG----------LFGVEVDVTDSDAVDRAFTAVEEHQGPV 82 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCCTT----------SEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHH----------hcCeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999999999 999999995432221 1137788887632 268
Q ss_pred cEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||...... ..++++..+++|+.++.++++++. +.+. +||++||...+..
T Consensus 83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 146 (247)
T 1uzm_A 83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG---------------- 146 (247)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccC----------------
Confidence 99999999764322 123456788999999999988764 3455 8999999865421
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+.++
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~ 189 (247)
T 1uzm_A 147 IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 189 (247)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCccc
Confidence 122367999999999999998876 4899999999999775
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=146.15 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=123.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc--------CCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL--------IEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--------~~~ 98 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+.....+....+ .....+..+.+|+++... .++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG-ANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 347899999999999999999999999 99999999533222222222 113467888999988632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++++..+++|+.++..+.+++ ++.+. +||++||...+. +
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 150 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM----------------P 150 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------------C
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------------C
Confidence 9999999986543322 234566899999987776654 34454 899999987652 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.++ |++++.+.||.+..+
T Consensus 151 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (267)
T 3t4x_A 151 SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE 193 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCc
Confidence 3344679999999999999998775 799999999998875
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=147.45 Aligned_cols=166 Identities=14% Similarity=0.008 Sum_probs=123.7
Q ss_pred ccCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc----------
Q 027129 29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---------- 95 (228)
...+|+++||||+ |+||++++++|+++| ++|++++|+. ...+....+. ....+.++++|+++...
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 88 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGD-RFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT 88 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSG-GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecch-hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3458999999999 999999999999999 9999999852 2222232221 22357889999998632
Q ss_pred --CCccEEEEccCCCCcc---------cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||..... ...++....+++|+.++..+++++... +.+||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 159 (271)
T 3ek2_A 89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--------- 159 (271)
T ss_dssp HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc---------
Confidence 2799999999976531 122334677899999999999988664 23899999987652
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+..+...
T Consensus 160 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~ 206 (271)
T 3ek2_A 160 -------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAAS 206 (271)
T ss_dssp -------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----C
T ss_pred -------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhh
Confidence 22334679999999999999998764 899999999999887543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=147.35 Aligned_cols=164 Identities=11% Similarity=-0.010 Sum_probs=125.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|......+...... ...++.++++|+++...
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMG-LKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD 105 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999 999999995333222222211 12478899999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ ++.+..+++|+.++.++++++. +.+. +||++||...+.
T Consensus 106 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 171 (271)
T 4iin_A 106 GGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER-------------- 171 (271)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC--------------
Confidence 2799999999986543222 3346778999999988887764 3454 899999986652
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+..+.+.|+.+|...+.+.+.++.+ .++++++++||.+..+.
T Consensus 172 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 216 (271)
T 4iin_A 172 --GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDM 216 (271)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-
T ss_pred --CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCc
Confidence 2234467999999999999999877 58999999999998764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=147.89 Aligned_cols=165 Identities=11% Similarity=-0.052 Sum_probs=125.7
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+| +||++++++|+++| ++|++++|+.. ..+...... ....+.++++|+++...
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSET-FKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE 105 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3478999999997 99999999999999 99999999532 112222211 11346789999998642
Q ss_pred -CCccEEEEccCCCCc----c----cccCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASP----I----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~----~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...+++...+++|+.++..+++++...- .+||++||...+.
T Consensus 106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~----------- 174 (296)
T 3k31_A 106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK----------- 174 (296)
T ss_dssp HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-----------
Confidence 279999999997643 1 1223456788999999999999987542 2899999987652
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.|..+...
T Consensus 175 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~ 221 (296)
T 3k31_A 175 -----VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASS 221 (296)
T ss_dssp -----CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCC
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhh
Confidence 22334679999999999999998774 899999999999987544
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=146.55 Aligned_cols=164 Identities=19% Similarity=0.112 Sum_probs=125.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC------------Cchhhhhh----c-CCCceEEEeccCCCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------------SKDNLRKW----I-GHPRFELIRHDVTEP 93 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------------~~~~~~~~----~-~~~~~~~~~~d~~~~ 93 (228)
++|+++||||+|+||++++++|+++| ++|++++|+... ..+.+... . ...++.++++|+++.
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEG-ADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 47999999999999999999999999 999999885321 12222211 1 134688999999986
Q ss_pred cc------------CCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHHH----cC-C-eEEEEcccee
Q 027129 94 LL------------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEV 150 (228)
Q Consensus 94 ~~------------~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-r~i~~Ss~~~ 150 (228)
.. .++|++||+||...... ..++++..+++|+.++..+++++.. .+ . +||++||...
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 168 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG 168 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 32 27999999999765432 1234567889999999999887643 23 3 8999999876
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 151 y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+. +......|+.+|...+.+.+.++.+ +|++++++.||.+..+..
T Consensus 169 ~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~ 216 (286)
T 3uve_A 169 LK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPML 216 (286)
T ss_dssp TS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTT
T ss_pred cc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcc
Confidence 52 2233467999999999999999877 589999999999998754
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=148.55 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+. +....... ..++.++.+|+++... .
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREE----RLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCH----HHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCH----HHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999 9999999942 22222211 1468889999998642 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++|++||+||........ ++.+..+++|+.++.++++++... +.+||++||...++.
T Consensus 80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------------- 143 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA---------------- 143 (263)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH----------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC----------------
Confidence 689999999976432222 234567899999999999988764 348999999876521
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
.....|+.+|...+.+.+.++.+. |+++++++||.++++..
T Consensus 144 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 187 (263)
T 2a4k_A 144 -FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT 187 (263)
T ss_dssp -HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchh
Confidence 112569999999999999988764 89999999999998753
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=142.38 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHh-cCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc----------CCcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVD 99 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~D 99 (228)
+||+++||||+|+||++++++|++ .| +.|++.+|...... ..+.++++|+++... .++|
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~id 72 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSFSA---------ENLKFIKADLTKQQDITNVLDIIKNVSFD 72 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCCCC---------TTEEEEECCTTCHHHHHHHHHHTTTCCEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccccccc---------ccceEEecCcCCHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999 67 89999888543221 356888999988632 2799
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
++||+||........ ++++..+++|+.++..+++++...- .+||++||...+. +...
T Consensus 73 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~ 136 (244)
T 4e4y_A 73 GIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI----------------AKPN 136 (244)
T ss_dssp EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC----------------CCTT
T ss_pred EEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc----------------CCCC
Confidence 999999986543222 3346778999999999999887642 2799999987652 2233
Q ss_pred CChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
...|+.+|...+.+.+.++.+ +|+++++++||.+.++.
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 177 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDL 177 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchh
Confidence 467999999999999999874 58999999999998763
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=147.95 Aligned_cols=165 Identities=14% Similarity=0.006 Sum_probs=122.8
Q ss_pred cCCCEEEEecCcch--hHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||+|+ ||++++++|+++| ++|++++|+.. ..+....+. ....+.++++|+++...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDA-LKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHH-HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHH-HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 34789999999988 9999999999999 99999988421 111222211 11357889999998632
Q ss_pred -CCccEEEEccCCCCc-----c---cccCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||.... . ...++++..+++|+.++..+++++... +.+||++||...+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------- 175 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------- 175 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence 379999999997642 1 112345678899999999999988753 22899999987653
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+..+...
T Consensus 176 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~ 222 (293)
T 3grk_A 176 -----VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAAS 222 (293)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC----
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhh
Confidence 2223467999999999999999876 4899999999999987543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=147.71 Aligned_cols=164 Identities=13% Similarity=0.009 Sum_probs=123.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEc-CCCCCCchhhhhhc--CCCceEEEeccCCCcc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------ 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------ 94 (228)
..+|+++||||+|+||++++++|+++| ++|++++ |+.....+....+. ....+.++++|+++..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G-~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 346899999999999999999999999 9999998 74222111111111 1246888999999876
Q ss_pred -----c------------CCccEEEEccCCCCcccc------------------cCCchhhHHhhHHHHHHHHHHHH---
Q 027129 95 -----L------------IEVDQIYHLACPASPIFY------------------KYNPVKTIKTNVIGTLNMLGLAK--- 136 (228)
Q Consensus 95 -----~------------~~~D~vi~~a~~~~~~~~------------------~~~~~~~~~~n~~~~~~l~~~~~--- 136 (228)
. .++|++||+||....... .++.+..+++|+.++..+++++.
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 169999999997643222 22234678999999999988764
Q ss_pred -HcC------C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeecc
Q 027129 137 -RVG------A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFN 205 (228)
Q Consensus 137 -~~~------~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~ 205 (228)
+.+ . +||++||...+. +......|+.+|...+.+.+.++.++ |+++++++||.
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~ 266 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 266 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCc
Confidence 334 4 899999986552 22334679999999999999998774 89999999999
Q ss_pred ccCCC
Q 027129 206 TYGPR 210 (228)
Q Consensus 206 i~G~~ 210 (228)
|..+.
T Consensus 267 v~T~~ 271 (328)
T 2qhx_A 267 SVLVD 271 (328)
T ss_dssp BSCCC
T ss_pred ccCCc
Confidence 99876
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-20 Score=147.12 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=104.1
Q ss_pred EEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
+|+|||||||||++++++|++. | ++|++++|+..+... +. ...++++.+|+++.. +.++|+|||+|+
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~-~~----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQA-LA----AQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTCHH-HH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhhhh-hh----cCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5899999999999999999998 8 999999996443321 11 136788999998853 347999999997
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
... ..|+.++.++++++++.++ |||++||..+|. .+ ..|+.+|..+|+
T Consensus 75 ~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~sK~~~e~ 123 (286)
T 2zcu_A 75 SEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT---------------SP----LGLADEHIETEK 123 (286)
T ss_dssp -------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT---------------CC----STTHHHHHHHHH
T ss_pred CCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------Cc----chhHHHHHHHHH
Confidence 421 1478899999999999887 899999988762 11 359999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
+++. ++++++++||+.++++
T Consensus 124 ~~~~----~~~~~~ilrp~~~~~~ 143 (286)
T 2zcu_A 124 MLAD----SGIVYTLLRNGWYSEN 143 (286)
T ss_dssp HHHH----HCSEEEEEEECCBHHH
T ss_pred HHHH----cCCCeEEEeChHHhhh
Confidence 8764 5899999999876664
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-20 Score=148.08 Aligned_cols=163 Identities=17% Similarity=0.066 Sum_probs=119.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+. ....+.++++|+++... .
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 110 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA 110 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999 999999994332222111111 11235889999998642 2
Q ss_pred CccEEEEccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHH----HcC--C-eEEEEccceeccCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--A-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
++|++||+||..... . ..++++..+++|+.++..+.+++. +.+ . +||++||...+.
T Consensus 111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------------ 178 (281)
T 4dry_A 111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT------------ 178 (281)
T ss_dssp CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC------------
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC------------
Confidence 789999999975431 1 123346688999999888877653 333 3 899999986542
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +|+++++++||.|..+.
T Consensus 179 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 223 (281)
T 4dry_A 179 ----PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDM 223 (281)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC--
T ss_pred ----CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChh
Confidence 3334467999999999999999876 58999999999998764
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=142.31 Aligned_cols=164 Identities=19% Similarity=0.127 Sum_probs=124.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC---------CCchhhhhh-----cCCCceEEEeccCCCccc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---------GSKDNLRKW-----IGHPRFELIRHDVTEPLL 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---------~~~~~~~~~-----~~~~~~~~~~~d~~~~~~ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|... ...+..... .....+.++.+|+++...
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEG-ADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 347899999999999999999999999 99999988422 122222111 123568889999998642
Q ss_pred ------------CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcC-C-eEEEEccceeccC
Q 027129 96 ------------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-A-RILLTSTSEVYGD 153 (228)
Q Consensus 96 ------------~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-~-r~i~~Ss~~~y~~ 153 (228)
.++|++||+||....... .++++..+++|+.++..+++++ .+.+ . +||++||...+.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~- 166 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK- 166 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC-
Confidence 369999999998654322 2345677899999999998874 3333 3 899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |++++.++||.+..+.
T Consensus 167 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~ 211 (277)
T 3tsc_A 167 ---------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPM 211 (277)
T ss_dssp ---------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGG
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCc
Confidence 22234679999999999999998774 8999999999998864
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=145.71 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=124.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC--------Cchhhhhhc-----CCCceEEEeccCCCccc--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRKWI-----GHPRFELIRHDVTEPLL-- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~~~~~~-----~~~~~~~~~~d~~~~~~-- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|.... ..+.+.... ...++.++++|+++...
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 46899999999999999999999999 999999885322 122222111 13468899999998642
Q ss_pred ----------CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCC
Q 027129 96 ----------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPL 155 (228)
Q Consensus 96 ----------~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~ 155 (228)
.++|++||+||....... .++++..+++|+.++..+++++. +.+ .+||++||...+.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~--- 200 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR--- 200 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC---
Confidence 279999999997654322 23346778999999999988764 333 2799999987652
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 156 VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 156 ~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.|+++.
T Consensus 201 -------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 245 (317)
T 3oec_A 201 -------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM 245 (317)
T ss_dssp -------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred -------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcc
Confidence 22334679999999999999998874 8999999999998863
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.7e-19 Score=141.68 Aligned_cols=139 Identities=17% Similarity=0.230 Sum_probs=102.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
|+|+||||||+||++++++|++. | ++|++++|+..+.. .+ ...+++++.+|+++.. +.++|+|||+++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~~----~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKVP----DD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGSC----GG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHHH----Hh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 68999999999999999999987 8 99999999543322 11 1247899999999863 458999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
.... ...|+.++.++++++++.++ |||++||.+. .. . .+.. +...+..+|.
T Consensus 75 ~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~---~~------~-----~~~~----~~~~~~~~e~ 126 (289)
T 3e48_A 75 IIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD---QH------N-----NPFH----MSPYFGYASR 126 (289)
T ss_dssp CCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC---ST------T-----CCST----THHHHHHHHH
T ss_pred CCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC---CC------C-----CCCc----cchhHHHHHH
Confidence 5432 14578999999999999997 8999999532 11 0 1111 2222233444
Q ss_pred HHHHHHHHhCCcEEEeeeccccCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
.+ .+.+++++++||+.+||+
T Consensus 127 ~~----~~~g~~~~ilrp~~~~~~ 146 (289)
T 3e48_A 127 LL----STSGIDYTYVRMAMYMDP 146 (289)
T ss_dssp HH----HHHCCEEEEEEECEESTT
T ss_pred HH----HHcCCCEEEEeccccccc
Confidence 33 356999999999999997
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=144.62 Aligned_cols=163 Identities=15% Similarity=0.047 Sum_probs=120.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccC--CCccc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDV--TEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~--~~~~~---------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ....+.++..|+ ++...
T Consensus 10 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (252)
T 3f1l_A 10 LNDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV 88 (252)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence 347999999999999999999999999 999999994332222111111 123678888998 65421
Q ss_pred --CCccEEEEccCCCCcc-c-c---cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPI-F-Y---KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~-~-~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||..... . . .++++..+++|+.++..+++++ ++.+. +||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------- 157 (252)
T 3f1l_A 89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ----------- 157 (252)
T ss_dssp HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc-----------
Confidence 2799999999974321 1 1 1234577899999999999987 34444 899999986542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHhC--CcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~--i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+++ ++++.+.||.+..+
T Consensus 158 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~ 200 (252)
T 3f1l_A 158 -----GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA 200 (252)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc
Confidence 223346799999999999999998863 89999999998654
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=144.00 Aligned_cols=164 Identities=11% Similarity=0.023 Sum_probs=112.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------c-CCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------L-IEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~-~~~D~vi 102 (228)
||+++||||+|+||++++++|+++| ++|++++|+..+... . +.+|+++.. . .++|++|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv 67 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLV 67 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence 5789999999999999999999999 999999995432211 0 334444331 1 4689999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCC-----CCC-------
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES-----YWG------- 165 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~-----~~~------- 165 (228)
|+||.... ....+..+++|+.++.++++++. +.+. +||++||...+......+..+. ++.
T Consensus 68 ~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (257)
T 1fjh_A 68 LCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVE 144 (257)
T ss_dssp ECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHH
T ss_pred ECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhh
Confidence 99986541 23467889999999999998875 3443 8999999987732211111000 000
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
...+..+...|+.+|...+.+.+.++.+ +|+++++++||.+.++..
T Consensus 145 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~ 193 (257)
T 1fjh_A 145 HAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL 193 (257)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------
T ss_pred cccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccc
Confidence 0012223467999999999999998776 589999999999988753
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=144.94 Aligned_cols=180 Identities=16% Similarity=0.060 Sum_probs=125.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCc-cc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP-LL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~-~~----------- 95 (228)
..+|+++||||+|+||++++++|+++| ++|++++|+..+..+....+.. ..++.++.+|+++. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 347899999999999999999999999 9999999954333232333322 24689999999997 32
Q ss_pred -CCccEEEEccCCCCcc----------------------------------cccCCchhhHHhhHHHHHHHHHHHHH---
Q 027129 96 -IEVDQIYHLACPASPI----------------------------------FYKYNPVKTIKTNVIGTLNMLGLAKR--- 137 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~----------------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~--- 137 (228)
.++|++||+||..... ...+..+..+++|+.++..+++++..
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 2799999999976421 01122356689999999998887643
Q ss_pred -cCC-eEEEEccceeccCCCCC-----------C----------------CCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 138 -VGA-RILLTSTSEVYGDPLVH-----------P----------------QDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 138 -~~~-r~i~~Ss~~~y~~~~~~-----------~----------------~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
.+. +||++||...+...... . ..+..........+...|+.||...+.+.+
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~ 248 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHH
Confidence 343 89999998654321000 0 000000000112344679999999999999
Q ss_pred HHHHHh-CCcEEEeeeccccCCC
Q 027129 189 DYHRQH-GIEIRIARIFNTYGPR 210 (228)
Q Consensus 189 ~~~~~~-~i~~~ilRp~~i~G~~ 210 (228)
.++.++ +++++.+.||.|..+.
T Consensus 249 ~la~e~~~i~v~~v~PG~v~T~~ 271 (311)
T 3o26_A 249 VLANKIPKFQVNCVCPGLVKTEM 271 (311)
T ss_dssp HHHHHCTTSEEEEECCCSBCSGG
T ss_pred HHHhhcCCceEEEecCCceecCC
Confidence 999886 7999999999998764
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=143.52 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=121.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 98 (228)
.++|+++||||+|+||++++++|+++| ++|++++|. .+...... ...+.++++|+++... .++
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~----~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g~i 80 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAG-AQVVVLDIR----GEDVVADL-GDRARFAAADVTDEAAVASALDLAETMGTL 80 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESS----CHHHHHHT-CTTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCc----hHHHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 347899999999999999999999999 999999983 22222222 3468899999998632 279
Q ss_pred cEEEEccCCCCcc--------cccCCchhhHHhhHHHHHHHHHHHHHc------------CC-eEEEEccceeccCCCCC
Q 027129 99 DQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV------------GA-RILLTSTSEVYGDPLVH 157 (228)
Q Consensus 99 D~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~------------~~-r~i~~Ss~~~y~~~~~~ 157 (228)
|++||+||..... ...++++..+++|+.++..+++++... +. +||++||...+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 155 (257)
T 3tl3_A 81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD----- 155 (257)
T ss_dssp EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C-----
T ss_pred CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC-----
Confidence 9999999975321 222445678899999999999987642 23 899999987652
Q ss_pred CCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.+ +|+++++++||.+..+...
T Consensus 156 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~ 202 (257)
T 3tl3_A 156 -----------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLA 202 (257)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-
T ss_pred -----------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhh
Confidence 2223357999999999999998876 4899999999999887543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=141.79 Aligned_cols=165 Identities=11% Similarity=-0.045 Sum_probs=125.3
Q ss_pred cCCCEEEEecCcch--hHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc---------
Q 027129 30 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~--------- 95 (228)
.++|+++||||+|+ ||++++++|+++| ++|++++|.. ...+...++. ...++.++++|+++...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGE-RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSG-GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCch-HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 44789999999987 9999999999999 9999998852 2222222221 22368899999998742
Q ss_pred ---CCccEEEEccCCCCc----cc-c---cCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASP----IF-Y---KYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~----~~-~---~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||.... .. . .++....+++|+.++..+++++...- .+||++||...+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------- 153 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL--------- 153 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS---------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc---------
Confidence 269999999997652 11 1 12345678999999999999887642 2899999987652
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ |+++++++||.+..+...
T Consensus 154 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~ 200 (266)
T 3oig_A 154 -------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAK 200 (266)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGT
T ss_pred -------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccc
Confidence 22334679999999999999998764 899999999999886433
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=147.56 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=120.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh---hhhhc----CCCceEEEeccCCCccc---------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWI----GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~----~~~~~~~~~~d~~~~~~--------- 95 (228)
+|+++||||+|+||++++++|+++| ++|+++.|........ ..... ...++.++.+|+++...
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G-~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999 8888887743332211 11110 12468899999998632
Q ss_pred -CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||....... .++.+..+++|+.++.++++++ ++.+. +||++||...+..
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~------------ 148 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG------------ 148 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC------------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccC------------
Confidence 259999999997543221 1334678899999999999985 44455 8999999865421
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.|..+.
T Consensus 149 ----~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 149 ----LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 122357999999999999999875 58999999999998765
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=142.46 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCc---------ccCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEP---------LLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~---------~~~~~D~v 101 (228)
||+++||||+|+||++++++|+++| ++|++++|+..+.. ....+.. ...+..+ |..+. .+.++|++
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~l 76 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKD-ELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVL 76 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHH-HHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHH-HHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEE
Confidence 5789999999999999999999999 99999998543322 1111110 1122222 32221 11379999
Q ss_pred EEccCCC-Ccccc----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPA-SPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~-~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||+||.. ..... .++.+..+++|+.++..+++++. +.+. +||++||...+. +..
T Consensus 77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~ 140 (254)
T 1zmt_A 77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWK 140 (254)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCT
T ss_pred EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc----------------CCC
Confidence 9999976 32211 13346778999999999888763 3444 999999986552 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM 211 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~ 211 (228)
....|+.+|...+.+.+.++.++ |+++++++||.++|+..
T Consensus 141 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~ 183 (254)
T 1zmt_A 141 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDS 183 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTC
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccc
Confidence 34679999999999999988764 89999999999988754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=142.83 Aligned_cols=163 Identities=13% Similarity=0.009 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEc-CCCCCCchhhhhhc--CCCceEEEeccCCCcc-------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~------------- 94 (228)
++|+++||||+|+||++++++|+++| ++|++++ |+.....+....+. ...++.++++|+++..
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 86 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence 47899999999999999999999999 9999999 74322111111211 1346888999999876
Q ss_pred ----c------------CCccEEEEccCCCCcccc------------------cCCchhhHHhhHHHHHHHHHHHH----
Q 027129 95 ----L------------IEVDQIYHLACPASPIFY------------------KYNPVKTIKTNVIGTLNMLGLAK---- 136 (228)
Q Consensus 95 ----~------------~~~D~vi~~a~~~~~~~~------------------~~~~~~~~~~n~~~~~~l~~~~~---- 136 (228)
. .++|++||+||....... .++.+..+++|+.++..+++++.
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~ 166 (291)
T 1e7w_A 87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 166 (291)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2 169999999997643221 22235678999999999988765
Q ss_pred HcC------C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccc
Q 027129 137 RVG------A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT 206 (228)
Q Consensus 137 ~~~------~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i 206 (228)
+.+ . +||++||...+. +......|+.+|...+.+.+.++.+ +|++++.++||.+
T Consensus 167 ~~~~~~~~~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 230 (291)
T 1e7w_A 167 GTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230 (291)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred hcCCCCCCCCcEEEEEechhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCc
Confidence 334 4 899999986552 2233467999999999999998876 4899999999998
Q ss_pred cCCC
Q 027129 207 YGPR 210 (228)
Q Consensus 207 ~G~~ 210 (228)
..+.
T Consensus 231 ~T~~ 234 (291)
T 1e7w_A 231 VLVD 234 (291)
T ss_dssp CCGG
T ss_pred cCCc
Confidence 7664
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=142.40 Aligned_cols=163 Identities=18% Similarity=0.121 Sum_probs=119.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccC--CCcc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDV--TEPL----------- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~--~~~~----------- 94 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+. ......++..|+ ++..
T Consensus 12 l~~k~vlITGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 12 LKGRVILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 347999999999999999999999999 999999995332222222211 123556666666 5542
Q ss_pred -cCCccEEEEccCCCCccc-----ccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 95 -LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 95 -~~~~D~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
+.++|++||+||...... ..++.+..+++|+.++..+++++. +.+. +||++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK----------- 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS-----------
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC-----------
Confidence 127999999999753221 123456778999999999999873 3444 899999986542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh----CCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~----~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.+|...+.+.+.++.++ +++++.+.||.+..+
T Consensus 160 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~ 204 (247)
T 3i1j_A 160 -----GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG 204 (247)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH
T ss_pred -----CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc
Confidence 23334679999999999999998763 789999999998664
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=147.39 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=109.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc-CCCcc-----cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD-VTEPL-----LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~-----~~~~D~vi~~a 105 (228)
+|+|+|||||||||++++++|++.| ++|++++|+..+.. ...+.....++++.+| +++.. +.++|+|||++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a 81 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 81 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhh--HHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcC
Confidence 5899999999999999999999999 99999999544321 1222222468899999 88753 35799999998
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccce--eccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE--VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~--~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
+... ...|..+ +++++++++.+ + |||++||.. .|+. .+...|+.+|.
T Consensus 82 ~~~~-----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------------~~~~~y~~sK~ 132 (352)
T 1xgk_A 82 TSQA-----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-----------------WPAVPMWAPKF 132 (352)
T ss_dssp CSTT-----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------------CCCCTTTHHHH
T ss_pred CCCC-----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------------CCCccHHHHHH
Confidence 6321 1336666 99999999998 7 899999985 3321 11245999999
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.+|++++. .+++++++||+ +||++..
T Consensus 133 ~~E~~~~~----~gi~~~ivrpg-~~g~~~~ 158 (352)
T 1xgk_A 133 TVENYVRQ----LGLPSTFVYAG-IYNNNFT 158 (352)
T ss_dssp HHHHHHHT----SSSCEEEEEEC-EEGGGCB
T ss_pred HHHHHHHH----cCCCEEEEecc-eecCCch
Confidence 99999865 38999999976 6887653
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=135.92 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=123.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi 102 (228)
++|+++||||++.||+++++.|.++| .+|++.+|+.....+ ....++..+++|+++.. +.++|++|
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~G-a~Vv~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 10 AGQQVLVTGGSSGIGAAIAMQFAELG-AEVVALGLDADGVHA-----PRHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTSTTS-----CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHhh-----hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 48999999999999999999999999 999999995443322 12357888999999864 34799999
Q ss_pred EccCCCCccc--ccCCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 103 HLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 103 ~~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
|+||...+.. ..++++..+++|+.++..+.+++. +.+.+||++||...+. +......|
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~Y 147 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPAY 147 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHHH
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHHH
Confidence 9999765322 123456788999999988887653 3344899999986532 22233679
Q ss_pred HHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 177 DEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+.||.....+.+.++.+ +||+++.|-||.|..|.
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m 184 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPL 184 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChh
Confidence 99999999999999876 48999999999998764
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=138.61 Aligned_cols=160 Identities=13% Similarity=-0.008 Sum_probs=121.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch------h-hhhhc-CCCceEEEeccCCCccc------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------N-LRKWI-GHPRFELIRHDVTEPLL------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------~-~~~~~-~~~~~~~~~~d~~~~~~------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+ . ...+. ...++.++++|+++...
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADG-ANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999 999999997654221 1 11111 13468899999998632
Q ss_pred ------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCCCC
Q 027129 96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 96 ------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.++|++||+||........ ++.+..+++|+.++..+.+++... +. +||++||...+..
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------- 158 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------- 158 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-------
Confidence 2799999999986543322 234567789999999999987543 33 8999999765421
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeecc
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFN 205 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~ 205 (228)
.......|+.+|...+.+.+.++.+ +|++++.+.||.
T Consensus 159 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~ 198 (285)
T 3sc4_A 159 --------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRT 198 (285)
T ss_dssp --------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSS
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCC
Confidence 1123367999999999999999877 589999999994
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=139.83 Aligned_cols=166 Identities=14% Similarity=0.009 Sum_probs=122.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh-hhhcC-CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|+++.+......+.. ..+.. ...+.++++|+++...
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999 99999855333222222 22211 2468889999998642
Q ss_pred CCccEEEEccCCCCccc-c----cCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF-Y----KYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~-~----~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+||...... . .++++..+++|+.++.++++++...- .+||++||...+..
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-------------- 150 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--------------
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--------------
Confidence 27999999998652221 1 12346778999999999999987652 28999999876511
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHhC--CcEEEeeeccccCCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRM 211 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~~--i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+++ ++++.+.||.+..+..
T Consensus 151 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~ 195 (259)
T 3edm_A 151 -GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFH 195 (259)
T ss_dssp -CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC---
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccc
Confidence 122336799999999999999988763 9999999999988643
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=138.84 Aligned_cols=169 Identities=10% Similarity=-0.005 Sum_probs=127.6
Q ss_pred hccCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcC--CCceEEEeccCCCccc-------
Q 027129 28 FFQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPLL------- 95 (228)
Q Consensus 28 ~~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~d~~~~~~------- 95 (228)
+..++|+++||||+ |+||++++++|++.| ++|++++|+.... .+...++.. ..++.++++|+++...
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMG-AAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTS-CEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHH
Confidence 34558999999999 999999999999999 9999998865543 222222221 3578889999998642
Q ss_pred -----CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCC
Q 027129 96 -----IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||........ ++.+..+++|+.++.++++++ ++.+. +||++||...+...
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 167 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------- 167 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC-------
Confidence 2689999999976543322 334678899999999998877 44444 89999998654221
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhC--CcEEEeeeccccCCCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRM 211 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~--i~~~ilRp~~i~G~~~ 211 (228)
...+...|+.+|...+.+.+.++.+++ ++++.+.||.+..+..
T Consensus 168 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~ 212 (267)
T 3gdg_A 168 -------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLS 212 (267)
T ss_dssp -------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCG
T ss_pred -------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchh
Confidence 112346799999999999999998763 8999999999987643
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-19 Score=138.07 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=125.1
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------ 95 (228)
..++|+++||||++.||+++++.|.++| .+|++.+|+.....+...++.. ..++..+++|+++...
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~G-a~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALND-SIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999999 9999999943322222222221 2468889999998743
Q ss_pred CCccEEEEccCCCCcc-cc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPI-FY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~-~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||..... .. .++++..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~------------- 149 (254)
T 4fn4_A 83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR------------- 149 (254)
T ss_dssp SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-------------
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC-------------
Confidence 3799999999965432 12 2345678899999998887765 44455 999999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|.....+.+.++.+ +||+++.|-||.|-.+.
T Consensus 150 ---~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 194 (254)
T 4fn4_A 150 ---GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNI 194 (254)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSC
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcc
Confidence 2223357999999999999999876 48999999999997663
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=140.28 Aligned_cols=159 Identities=17% Similarity=0.099 Sum_probs=120.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+ .+...... ....+.++++|+++... .
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEG-ARVAVLDKS----AERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFG 78 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCC----HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999 999999994 33222211 12468889999998632 2
Q ss_pred CccEEEEccCCCCccccc---------CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK---------YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~---------~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
++|++||+||........ +.++..+++|+.++..+++++.. .+.++|++||...+.
T Consensus 79 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 147 (281)
T 3zv4_A 79 KIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY----------- 147 (281)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-----------
T ss_pred CCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc-----------
Confidence 799999999975432111 12456788999999999887643 334899999986542
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.++ .++++.+.||.+..+.
T Consensus 148 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~ 191 (281)
T 3zv4_A 148 -----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDL 191 (281)
T ss_dssp -----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCc
Confidence 22334679999999999999998875 3999999999998764
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=139.95 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=112.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-c--CCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-D--NYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~v 101 (228)
+|+++||||+|+||++++++|+++| ++|+++ + |+.....+....+ ...++.+.+..+. .+.++|++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~r~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~g~iD~l 76 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQRFESEN---PGTIALAEQKPERLVDATLQHGEAIDTI 76 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSHHHHHHHHHHS---TTEEECCCCCGGGHHHHHGGGSSCEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEecCCcCCHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHHcCCCCEE
Confidence 5899999999999999999999999 999999 6 8422111111111 1233331111111 12379999
Q ss_pred EEccCCCCc---cccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASP---IFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 102 i~~a~~~~~---~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
||+||.... .... ++.+..+++|+.++..+++++. +.+. +||++||...+..
T Consensus 77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~---------------- 140 (244)
T 1zmo_A 77 VSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKP---------------- 140 (244)
T ss_dssp EECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC----------------
T ss_pred EECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCC----------------
Confidence 999997643 2211 2345678999999999888764 4444 8999999876532
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 141 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 184 (244)
T 1zmo_A 141 LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPT 184 (244)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTT
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCc
Confidence 223356999999999999998876 48999999999987764
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-19 Score=137.22 Aligned_cols=146 Identities=16% Similarity=0.059 Sum_probs=115.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi 102 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.. +|+++.. +.++|++|
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEH-TIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999 99999998422 4555432 23799999
Q ss_pred EccCCCCcc-c----ccCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC
Q 027129 103 HLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174 (228)
Q Consensus 103 ~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~ 174 (228)
|+||..... . ..++++..+++|+.++..+++++...- .+||++||...+. +.....
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~~ 128 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK----------------VVANTY 128 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----------------CCTTCH
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----------------CCCCch
Confidence 999975321 1 123345678999999999999987642 2899999987653 233446
Q ss_pred hHHHhHHHHHHHHHHHHHHhC-CcEEEeeeccccCCCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQHG-IEIRIARIFNTYGPRMN 212 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~~~-i~~~ilRp~~i~G~~~~ 212 (228)
.|+.+|...+.+.+.++.+++ ++++.++||.+.++...
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~ 167 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYK 167 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhh
Confidence 799999999999999998875 99999999999987543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=138.49 Aligned_cols=162 Identities=13% Similarity=0.021 Sum_probs=118.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc-------------cC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-------------LI 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~-------------~~ 96 (228)
++|+++||||+|+||++++++|+++| ++|++++|+.....+....+.. ..++.++++|+++.. +.
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 82 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG 82 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999 9999999843221111111111 246788999999863 33
Q ss_pred CccEEEEccCCCC--------cc---cccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCC
Q 027129 97 EVDQIYHLACPAS--------PI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 97 ~~D~vi~~a~~~~--------~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
++|++||+||.+. .. ...++++..+++|+.++..+.+++. +.+. +||++||...+..
T Consensus 83 ~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 155 (260)
T 2qq5_A 83 RLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------- 155 (260)
T ss_dssp CCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC-------
T ss_pred CceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC-------
Confidence 6899999995311 11 1123345677889988877766553 4444 8999999876521
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+...|+.+|...+.+.+.++.+ +|+++++++||.+..+.
T Consensus 156 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 156 ----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 12357999999999999998865 48999999999998774
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-19 Score=138.29 Aligned_cols=165 Identities=18% Similarity=0.046 Sum_probs=125.6
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------c
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 95 (228)
..++|+++||||++.||+++++.|.++| .+|++.+|+.....+...++.. ..++..+++|++++. +
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAG-ARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 3458999999999999999999999999 9999999943322222222222 246788899999863 2
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HH-cCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KR-VGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~-~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++..+.+++ .+ .+. +||++||...+.
T Consensus 85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~------------- 151 (255)
T 4g81_D 85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA------------- 151 (255)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-------------
Confidence 3799999999986654332 345678899999998888764 22 233 999999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|.....+.+.++.+ +||+++.|-||.|..+.
T Consensus 152 ---~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 196 (255)
T 4g81_D 152 ---ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDM 196 (255)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGG
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCch
Confidence 2223367999999999999999876 48999999999997663
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-18 Score=133.49 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=123.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+|+|+||||++.||+++++.|+++| .+|++.+|+ .+...+.. +...+..+++|+++... .++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~----~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAG-DKVCFIDID----EKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999 999999994 33333322 23568889999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|++||+||........ ++++..+++|+.++..+.+++. +.+.++|++||...+. +.
T Consensus 77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~~ 140 (247)
T 3ged_A 77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------SE 140 (247)
T ss_dssp CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------CC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------CC
Confidence 9999999976543332 3456788999999988887654 3445999999986542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~~~ 212 (228)
.....|+.+|.....+.+.++.++ +++++.|-||.|-.+...
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~ 184 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ 184 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH
Confidence 223579999999999999998875 799999999999766543
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=139.87 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=124.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhc-CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|+++.+...... +....+. ....+.++..|+++...
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDG-ALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999 99988744322222 1122221 23467888999988632
Q ss_pred ------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc--C-CeEEEEccceeccCCCCCCCCCC
Q 027129 96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 ------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~--~-~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||........ ++.+..+++|+.++..+++++... + .+||++||...+.
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~---------- 153 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------- 153 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS----------
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc----------
Confidence 1399999999976543322 234567899999999999998764 2 3899999987653
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
+....+.|+.+|...+.+.+.++.++ +++++.++||.+..+...
T Consensus 154 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 200 (255)
T 3icc_A 154 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNA 200 (255)
T ss_dssp ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSST
T ss_pred ------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchh
Confidence 22234679999999999999998764 899999999999887543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=139.73 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=121.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hhhh----hc-CCCceEEEeccCCCccc------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRK----WI-GHPRFELIRHDVTEPLL------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~----~~-~~~~~~~~~~d~~~~~~------ 95 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+ .+.. .. ...++.++++|+++...
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDG-ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 357999999999999999999999999 999999996554221 1111 10 13468899999998642
Q ss_pred ------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCC
Q 027129 96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQD 160 (228)
Q Consensus 96 ------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~ 160 (228)
.++|++||+||........ ++.+..+++|+.++..+.+++.. .+. +||++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence 2799999999976543222 23456789999999999998643 333 89999998654210
Q ss_pred CCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeecccc
Q 027129 161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTY 207 (228)
Q Consensus 161 e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~ 207 (228)
+......|+.+|...+.+.+.++.++ |++++.+.||.+.
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v 198 (274)
T 3e03_A 157 --------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVI 198 (274)
T ss_dssp --------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCB
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCccc
Confidence 01233569999999999999998764 8999999999543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=144.11 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=108.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhh--cCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
+|+|+||||||+||++++++|++.| ++|++++|+.... .+....+ ....+++++.+|+++.. +.++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 6899999999999999999999999 9999999965432 2222111 12356899999999853 348999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHHhH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGK 180 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~sK 180 (228)
+++.... ..|+.+..++++++++.+ + |||+ | +|+...... + .+..+ .+.| .+|
T Consensus 83 ~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~------~~~~p~~~~y-~sK 138 (313)
T 1qyd_A 83 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM--E------HALQPGSITF-IDK 138 (313)
T ss_dssp CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC--C------CCCSSTTHHH-HHH
T ss_pred CCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc--c------cCCCCCcchH-HHH
Confidence 9985432 125677789999999998 7 7874 3 355322211 1 22233 3467 999
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
..+|++++ +.+++++++||+.++|.
T Consensus 139 ~~~e~~~~----~~g~~~~ilrp~~~~~~ 163 (313)
T 1qyd_A 139 RKVRRAIE----AASIPYTYVSSNMFAGY 163 (313)
T ss_dssp HHHHHHHH----HTTCCBCEEECCEEHHH
T ss_pred HHHHHHHH----hcCCCeEEEEeceeccc
Confidence 99998875 35899999999988773
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=136.91 Aligned_cols=164 Identities=18% Similarity=0.166 Sum_probs=125.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 95 (228)
..++|+++||||++.||+++++.|.++| .+|++.+|+.... +....+. ...++.++.+|+++...
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~G-a~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEER-AIPVVFARHAPDG-AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCCH-HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCcccH-HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 3458999999999999999999999999 9999999965432 2222221 23568889999998632
Q ss_pred CCccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+||.......+ +++...+++|+.++..+.+++. +.+.+||++||...+.
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------- 145 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT---------------- 145 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence 3799999999975443322 3355678999999988877653 3345999999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|.....+.+.++.+ +||+++.|-||.|..+.
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~ 190 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPL 190 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChh
Confidence 2223367999999999999999876 48999999999997664
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-19 Score=140.76 Aligned_cols=161 Identities=20% Similarity=0.132 Sum_probs=121.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~ 98 (228)
.++|+++||||+|+||++++++|+++| ++|++++|+..+..+....+ ...+.++++|+++... .++
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i 104 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQLGRL 104 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 347899999999999999999999999 99999999432222222222 2468999999998632 268
Q ss_pred cEEEEc-cCCCCcccc------c---CCchhhHHhhHHHHHHHHHHHHH----------cCC-eEEEEccceeccCCCCC
Q 027129 99 DQIYHL-ACPASPIFY------K---YNPVKTIKTNVIGTLNMLGLAKR----------VGA-RILLTSTSEVYGDPLVH 157 (228)
Q Consensus 99 D~vi~~-a~~~~~~~~------~---~~~~~~~~~n~~~~~~l~~~~~~----------~~~-r~i~~Ss~~~y~~~~~~ 157 (228)
|++||+ |+....... . ++.+..+++|+.++.++++++.. .+. +||++||...+.
T Consensus 105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----- 179 (281)
T 3ppi_A 105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE----- 179 (281)
T ss_dssp EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS-----
T ss_pred CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC-----
Confidence 999999 544332211 1 22467889999999999887652 123 899999987652
Q ss_pred CCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ |+++++++||.+..+
T Consensus 180 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~ 223 (281)
T 3ppi_A 180 -----------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTP 223 (281)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred -----------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCch
Confidence 22344679999999999999988774 899999999999875
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=132.76 Aligned_cols=163 Identities=13% Similarity=0.036 Sum_probs=124.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcccC-------CccE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLLI-------EVDQ 100 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~-------~~D~ 100 (228)
..++|+++||||++.||+++++.|.++| .+|++.+|+.. .+....+. ...+...+++|++++... ++|+
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~G-a~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDi 82 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAG-AEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDI 82 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcC-CEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence 3569999999999999999999999999 99999998532 22222221 234678899999986432 6999
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+||+||........ ++++..+++|+.++..+.+++ .+.+ . +||++||...+. +.
T Consensus 83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g~ 146 (247)
T 4hp8_A 83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------GG 146 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CC
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------CC
Confidence 99999986543332 345678899999998888864 3344 3 899999986542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.||.....+.+.++.+ +||+++.|-||.|-.+.
T Consensus 147 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~ 189 (247)
T 4hp8_A 147 IRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNN 189 (247)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGG
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc
Confidence 22357999999999999999876 48999999999997653
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=144.49 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=120.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC----------CCCchhhhhhc-CCCceEEEeccCCCccc----
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWI-GHPRFELIRHDVTEPLL---- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+. ....+....+. ....+.++.+|+++...
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 104 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEG-ARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL 104 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 47899999999999999999999999 9999998851 11111111111 12468889999998632
Q ss_pred --------CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHc-------C----CeEEEEccceecc
Q 027129 96 --------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV-------G----ARILLTSTSEVYG 152 (228)
Q Consensus 96 --------~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~-------~----~r~i~~Ss~~~y~ 152 (228)
.++|++||+||....... .++++..+++|+.++..+++++... + .+||++||...+.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 184 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ 184 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence 279999999998654322 2335678899999999998876431 1 3899999986652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 153 ~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++++.|| +..+
T Consensus 185 ----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~ 227 (322)
T 3qlj_A 185 ----------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTR 227 (322)
T ss_dssp ----------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSC
T ss_pred ----------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCc
Confidence 2223467999999999999999887 58999999999 6544
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=138.44 Aligned_cols=162 Identities=10% Similarity=-0.028 Sum_probs=121.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHh---cCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc---------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~--------- 95 (228)
++|+++||||+|+||++++++|++ .| ++|++++|+.....+....+. ...++.++.+|+++...
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 83 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCC-CeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999 89 999999994322221111211 13468889999998631
Q ss_pred -----CCcc--EEEEccCCCCc--c-----cccCCchhhHHhhHHHHHHHHHHHHHc------CC-eEEEEccceeccCC
Q 027129 96 -----IEVD--QIYHLACPASP--I-----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYGDP 154 (228)
Q Consensus 96 -----~~~D--~vi~~a~~~~~--~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~-r~i~~Ss~~~y~~~ 154 (228)
.++| ++||+||.... . ...++++..+++|+.++..+++++... +. +||++||...+.
T Consensus 84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~-- 161 (259)
T 1oaa_A 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ-- 161 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS--
T ss_pred hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC--
Confidence 1467 99999997532 1 112345678899999999999988642 22 799999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh-CCcEEEeeeccccCC
Q 027129 155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGP 209 (228)
Q Consensus 155 ~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~-~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ +++++.+.||.+-.+
T Consensus 162 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 --------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp --------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred --------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc
Confidence 22334679999999999999998876 599999999988654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=138.22 Aligned_cols=161 Identities=12% Similarity=0.009 Sum_probs=122.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch-------hhhhhc-CCCceEEEeccCCCccc-------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-------NLRKWI-GHPRFELIRHDVTEPLL------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-------~~~~~~-~~~~~~~~~~d~~~~~~------- 95 (228)
++|+++||||+|+||++++++|+++| ++|++++|+..+... ....+. ...++.++++|+++...
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~G-a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDG-ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCC-CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 47899999999999999999999999 999999996654221 111111 12468889999998642
Q ss_pred -----CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCC
Q 027129 96 -----IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 96 -----~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
.++|++||+||........ ++++..+++|+.++..+++++.. .+. +||++||...+...
T Consensus 123 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~------- 195 (346)
T 3kvo_A 123 AIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV------- 195 (346)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC-------
Confidence 2799999999976543322 33467789999999999998743 343 89999998655321
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccc
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNT 206 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i 206 (228)
+......|+.+|...+.+.+.++.++ +++++.+.|+.+
T Consensus 196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~ 235 (346)
T 3kvo_A 196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTA 235 (346)
T ss_dssp -------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBC
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 12344679999999999999998875 799999999963
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=141.41 Aligned_cols=162 Identities=13% Similarity=0.032 Sum_probs=118.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh----hhhcC-CCceEEEeccCCCccc---------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIG-HPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~----~~~~~-~~~~~~~~~d~~~~~~--------- 95 (228)
.++|+++||||+|+||++++++|+++| ++|+++.|.... .+.. ..+.. ..++.++++|+++...
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKD-SDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTSS-CEEEEEESCGGG-HHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecCccC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999 999998874221 1111 11111 3468889999998642
Q ss_pred ---CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc--CC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~--~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++.+..+++|+.++..+++++... +. ++|++||...+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------ 154 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------ 154 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC------------
Confidence 2799999999976543322 334567889999999999998764 22 8999999876532
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.++ |++++.+.||.+..+
T Consensus 155 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (262)
T 3ksu_A 155 ----TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTS 197 (262)
T ss_dssp ----HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTH
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCc
Confidence 1123569999999999999998875 899999999998764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=137.46 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=122.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||+++++.|.++| .+|++.+|+.....+...++ ..+...+++|+++... .++
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 104 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGRI 104 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999 99999999433222222222 2457788999998642 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|++||+||........ ++++..+++|+.++..+.+++... +.++|++||...+. +..
T Consensus 105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------------~~~ 168 (273)
T 4fgs_A 105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------------GTP 168 (273)
T ss_dssp EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS----------------CCT
T ss_pred CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc----------------CCC
Confidence 9999999976543332 345678899999999999987542 12799999986542 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|.....+.+.++.++ ||+++.|-||.|..+.
T Consensus 169 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~ 210 (273)
T 4fgs_A 169 AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTG 210 (273)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC--
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChh
Confidence 33679999999999999998774 8999999999997764
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=138.02 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=119.8
Q ss_pred CCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++|||| +|+||++++++|+++| ++|++++|+..+..+...... ..++.++.+|+++... .
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3689999999 9999999999999999 999999985322112221111 2357788999998631 2
Q ss_pred ---CccEEEEccCCCCc-----cc-c---cCCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCC
Q 027129 97 ---EVDQIYHLACPASP-----IF-Y---KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 97 ---~~D~vi~~a~~~~~-----~~-~---~~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e 161 (228)
++|++||+||.... .. . .++.+..+++|+.++..+++++... +.+||++||...++
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~--------- 154 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA--------- 154 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC---------
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc---------
Confidence 79999999997641 11 1 1234567899999999999998653 13899999875422
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.++ |+++++++||.+..+
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~ 197 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 197 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch
Confidence 1223679999999999999988764 899999999998765
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-19 Score=144.37 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=116.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-------eEEEEcCCCCCC--chhhhhhcCC-Cc--eEEEeccCCCcccCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVVDNYFTGS--KDNLRKWIGH-PR--FELIRHDVTEPLLIEVD 99 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-------~V~~~~r~~~~~--~~~~~~~~~~-~~--~~~~~~d~~~~~~~~~D 99 (228)
.|||+||||+||||++++..|+..| + +|+++++..... ......+... .. .++...+.....+.++|
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g-~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D 82 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGE-MLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCC
Confidence 5799999999999999999999988 5 899998842100 0001111110 01 12222111123456899
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEccceeccCCCCCCCCCCCCCCCC-CCCCCCh
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEVYGDPLVHPQDESYWGNVN-PIGVRSC 175 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~-~~~~~~~ 175 (228)
+|||+||..... ..+....++.|+.++.++++++++++ . +++++|+...- ..+..++. . ...|...
T Consensus 83 ~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~----~~~~~~~~----~~~~~p~~~ 152 (327)
T 1y7t_A 83 YALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT----NALIAYKN----APGLNPRNF 152 (327)
T ss_dssp EEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH----HHHHHHHT----CTTSCGGGE
T ss_pred EEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh----hHHHHHHH----cCCCChhhe
Confidence 999999975432 34567789999999999999999975 3 77877765310 00111110 1 2334567
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
|+.+|...|++...+++.+|++.+++|+..|||+...
T Consensus 153 yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 153 TAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp EECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred eccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 9999999999999999889999999999999998754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=138.63 Aligned_cols=144 Identities=18% Similarity=0.289 Sum_probs=104.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC--chhhhh--hcCCCceEEEeccCCCcc-----cCCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRK--WIGHPRFELIRHDVTEPL-----LIEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~--~~~~~~~~~~~~d~~~~~-----~~~~D~vi 102 (228)
||+|+||||||+||++++++|++.| ++|++++|+.... .+.... .....+++++.+|+++.. +.++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 82 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 82 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence 7899999999999999999999999 9999999965433 222111 112357899999999863 34799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHHh
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEG 179 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~s 179 (228)
|+++... +....+++++|++.+ + |||+ |+ ||... +|. .+..| .+.| .+
T Consensus 83 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~~~-----~~~~p~~~~y-~s 133 (308)
T 1qyc_A 83 STVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP-SE---FGNDV----DNV-----HAVEPAKSVF-EV 133 (308)
T ss_dssp ECCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC-SC---CSSCT----TSC-----CCCTTHHHHH-HH
T ss_pred ECCcchh---------------hhhHHHHHHHHHhcCCCceEee-cc---cccCc----ccc-----ccCCcchhHH-HH
Confidence 9997421 334578999999998 7 7763 43 44321 121 23333 3467 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
|..+|++++. .+++++++||+.++|.
T Consensus 134 K~~~e~~~~~----~~~~~~~~r~~~~~~~ 159 (308)
T 1qyc_A 134 KAKVRRAIEA----EGIPYTYVSSNCFAGY 159 (308)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH
T ss_pred HHHHHHHHHh----cCCCeEEEEeceeccc
Confidence 9999988754 4899999999988774
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=137.18 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=104.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC-CCC-c-hhhhhh--cCCCceEEEeccCCCcc-----cCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGS-K-DNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~-~-~~~~~~--~~~~~~~~~~~d~~~~~-----~~~~D~v 101 (228)
||+|+||||||+||++++++|++.| ++|++++|+. ... . +....+ ....+++++.+|+++.. +.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 80 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence 7899999999999999999999999 9999999964 111 1 211111 11246889999999863 3479999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDE 178 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~ 178 (228)
||+++... +....++++++++.+ + ||| .| +||... +|. .+..| .+.| .
T Consensus 81 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v-~S---~~g~~~----~~~-----~~~~p~~~~y-~ 131 (307)
T 2gas_A 81 ICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFF-PS---EFGLDV----DRH-----DAVEPVRQVF-E 131 (307)
T ss_dssp EECSSSSC---------------GGGHHHHHHHHHHHCCCSEEE-CS---CCSSCT----TSC-----CCCTTHHHHH-H
T ss_pred EECCcccc---------------cccHHHHHHHHHhcCCceEEe-ec---ccccCc----ccc-----cCCCcchhHH-H
Confidence 99998432 345678999999998 7 777 33 354321 121 22233 3568 9
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 179 sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
+|..+|.+++. .+++++++||+.+++..
T Consensus 132 sK~~~e~~~~~----~~i~~~~lrp~~~~~~~ 159 (307)
T 2gas_A 132 EKASIRRVIEA----EGVPYTYLCCHAFTGYF 159 (307)
T ss_dssp HHHHHHHHHHH----HTCCBEEEECCEETTTT
T ss_pred HHHHHHHHHHH----cCCCeEEEEcceeeccc
Confidence 99999988753 58999999999988853
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=142.68 Aligned_cols=161 Identities=16% Similarity=0.041 Sum_probs=122.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CC-
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE- 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~- 97 (228)
++++++||||+|+||++++++|.++| .+|++++|.. ..+..........+.++.+|+++... .+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~G-a~Vvl~~r~~--~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~ 288 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDG-ATVVAIDVDG--AAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGK 288 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECGG--GHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCC-CEEEEEeCCc--cHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999999999999 8999998842 12222222222246789999998742 13
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc----CC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|+|||+||........ ++++..+++|+.++.++.+++... +. +||++||...+..
T Consensus 289 id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g--------------- 353 (454)
T 3u0b_A 289 VDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG--------------- 353 (454)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHC---------------
T ss_pred ceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCC---------------
Confidence 99999999986543222 334577899999999999998765 34 8999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....+.|+.+|...+.+.+.++.+ +|++++++.||.+..+.
T Consensus 354 -~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~ 397 (454)
T 3u0b_A 354 -NRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKM 397 (454)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC--
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChh
Confidence 123467999999999999888765 48999999999998764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-17 Score=128.59 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=117.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE 97 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~ 97 (228)
.++|+++||||++.||++++++|.++| .+|++.+|...... .....+++|+++.. +.+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELG-AQVLTTARARPEGL---------PEELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTT-CEEEEEESSCCTTS---------CTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcC-CEEEEEECCchhCC---------CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 458999999999999999999999999 99999999533211 12236788998863 237
Q ss_pred ccEEEEccCCCCccc------ccCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+|++||+||...... ..++++..+++|+.++..+.+++ ++.+. +||++||...+-.
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------------- 145 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------------- 145 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC-------------
Confidence 999999998654321 12345677899999998887764 44555 8999999854311
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 146 --~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~ 189 (261)
T 4h15_A 146 --LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETE 189 (261)
T ss_dssp --CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCH
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCc
Confidence 1112357999999999999999876 4899999999998654
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=142.54 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=120.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCc--hhh-hhhc-CCCceEEEeccCCCccc--------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK--DNL-RKWI-GHPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~--~~~-~~~~-~~~~~~~~~~d~~~~~~-------- 95 (228)
...+++++||||+|+||++++++|.++| + +|+++.|+..... +.+ ..+. ...++.++.+|++|...
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G-~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRG-APHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHT-CSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 4558999999999999999999999999 6 5999999543211 111 1121 12468899999998632
Q ss_pred ---CCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcccee-ccCCCCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~ 166 (228)
..+|+|||+||....... .++....++.|+.++.++.+++.+.+. +||++||... ++..
T Consensus 302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~------------ 369 (486)
T 2fr1_A 302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP------------ 369 (486)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT------------
T ss_pred HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC------------
Confidence 257999999997654221 123456778999999999999988776 8999999754 3321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
..+.|+.+|...+.+.+.+.. .|+++++++||.+++++
T Consensus 370 -----g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~g 407 (486)
T 2fr1_A 370 -----GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSG 407 (486)
T ss_dssp -----TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC---
T ss_pred -----CCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCc
Confidence 225699999999998877654 49999999999998874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=128.74 Aligned_cols=165 Identities=13% Similarity=-0.003 Sum_probs=120.9
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~---------- 95 (228)
.++|+++||||+| .||++++++|.++| .+|++.+|+.....+....+ ....++..+++|+++...
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~G-a~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLG-AKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3589999999876 89999999999999 99999999533322221111 123468889999998632
Q ss_pred --CCccEEEEccCCCCcccc-----cCC---chhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFY-----KYN---PVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~-----~~~---~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||....... +.. +...+++|..++..+.+.+...- .+||++||.....
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~---------- 152 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF---------- 152 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS----------
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc----------
Confidence 379999999997643221 111 23456788888888887766532 2899999986431
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+..
T Consensus 153 ------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~ 198 (256)
T 4fs3_A 153 ------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSA 198 (256)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGG
T ss_pred ------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhh
Confidence 2233467999999999999999876 489999999999877543
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=134.73 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=112.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC-----CCchhh----hhhcCCCceEEEeccCCCcc------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-----GSKDNL----RKWIGHPRFELIRHDVTEPL------ 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~~~~~----~~~~~~~~~~~~~~d~~~~~------ 94 (228)
.++|+++||||+|+||++++++|++.| ++|+++++... ...+.. ..+..... ....|+.+..
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~G-a~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~--~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVEAGEKLV 83 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGGGHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC--eEEEeCCCHHHHHHHH
Confidence 347999999999999999999999999 99999866321 112211 11111111 1235666543
Q ss_pred ------cCCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEcccee-ccCCCCCC
Q 027129 95 ------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV-YGDPLVHP 158 (228)
Q Consensus 95 ------~~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~-y~~~~~~~ 158 (228)
+.++|++||+||....... .++++..+++|+.++..+.+++ ++.+. |||++||... ++.
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~----- 158 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN----- 158 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC-----
Confidence 2379999999997654322 2345678899999998888876 44455 9999999743 432
Q ss_pred CCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccc
Q 027129 159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT 206 (228)
Q Consensus 159 ~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i 206 (228)
.....|+.+|...+.+.+.++.+ +|+++++++||.+
T Consensus 159 ------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~ 197 (319)
T 1gz6_A 159 ------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG 197 (319)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc
Confidence 12357999999999999998876 4899999999987
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-18 Score=138.82 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=103.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC-CCC-chhhhhh--cCCCceEEEeccCCCcc-----cCCccEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGS-KDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIY 102 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~-~~~~~~~--~~~~~~~~~~~d~~~~~-----~~~~D~vi 102 (228)
||+|+||||||+||++++++|++.| ++|++++|+. ... .+....+ ....+++++.+|+++.. +.++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 6899999999999999999999999 9999999964 211 1111111 11246899999999863 34799999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHHh
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEG 179 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~s 179 (228)
|+++... +....++++++++.+ + ||| .| +|+... +|. .+..+ .+.| .+
T Consensus 83 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v-~S---~~g~~~----~~~-----~~~~p~~~~y-~s 133 (321)
T 3c1o_A 83 SALPFPM---------------ISSQIHIINAIKAAGNIKRFL-PS---DFGCEE----DRI-----KPLPPFESVL-EK 133 (321)
T ss_dssp ECCCGGG---------------SGGGHHHHHHHHHHCCCCEEE-CS---CCSSCG----GGC-----CCCHHHHHHH-HH
T ss_pred ECCCccc---------------hhhHHHHHHHHHHhCCccEEe-cc---ccccCc----ccc-----ccCCCcchHH-HH
Confidence 9997421 445679999999998 7 777 33 354321 121 22223 3568 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
|..+|.+++. .+++++++||+.+++.
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~ 159 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAY 159 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceeccc
Confidence 9999988753 4899999999988763
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=136.06 Aligned_cols=141 Identities=19% Similarity=0.270 Sum_probs=102.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~~ 107 (228)
++|+||||||+||++++++|++.| ++|++++|+.....+.+..+ ...+++++.+|+++.. +.++|+|||+++.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLLDEF-QSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHHHHh-hcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 589999999999999999999999 99999999654222222221 1246889999999853 3489999999974
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCC-CChHHHhHHHHH
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAE 184 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~-~~~y~~sK~~~e 184 (228)
.. +....++++++++.+ + |||+ |+ ||... +|. .+..| .+.| .+|..+|
T Consensus 90 ~~---------------~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~~~-----~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 90 PQ---------------ILDQFKILEAIKVAGNIKRFLP-SD---FGVEE----DRI-----NALPPFEALI-ERKRMIR 140 (318)
T ss_dssp GG---------------STTHHHHHHHHHHHCCCCEEEC-SC---CSSCT----TTC-----CCCHHHHHHH-HHHHHHH
T ss_pred hh---------------hHHHHHHHHHHHhcCCCCEEEe-ec---cccCc----ccc-----cCCCCcchhH-HHHHHHH
Confidence 21 345689999999988 7 7763 43 54321 121 22233 2457 9999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccC
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
.+++. .+++++++||+.+++
T Consensus 141 ~~~~~----~~~~~~~lr~~~~~~ 160 (318)
T 2r6j_A 141 RAIEE----ANIPYTYVSANCFAS 160 (318)
T ss_dssp HHHHH----TTCCBEEEECCEEHH
T ss_pred HHHHh----cCCCeEEEEcceehh
Confidence 88754 589999999987765
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=139.32 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=121.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCC--chh-hhhhcC-CCceEEEeccCCCccc-------C
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGS--KDN-LRKWIG-HPRFELIRHDVTEPLL-------I 96 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~--~~~-~~~~~~-~~~~~~~~~d~~~~~~-------~ 96 (228)
...+++++||||+|+||++++++|.+.| + +|+++.|+.... .+. ...+.. ..++.++.+|++|... .
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G-~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEG-AERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTT-CSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC-CcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 3457999999999999999999999999 6 689998854321 111 122222 2468899999998643 2
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc-CC-eEEEEcccee-ccCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEV-YGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~-~~-r~i~~Ss~~~-y~~~~~~~~~e~~~~~~~~ 169 (228)
++|+|||+||........ +..+..++.|+.++.++.+++... +. +||++||... ++.
T Consensus 335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~---------------- 398 (511)
T 2z5l_A 335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN---------------- 398 (511)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC----------------
T ss_pred CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC----------------
Confidence 599999999976543222 234567789999999999998766 55 8999999843 432
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
.....|+.+|...+.+.+.+. ..|+++++++||.+.+.+
T Consensus 399 -~g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tg 437 (511)
T 2z5l_A 399 -AGQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGG 437 (511)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTT
T ss_pred -CCCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCc
Confidence 123679999999999988764 459999999999884443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=126.43 Aligned_cols=166 Identities=13% Similarity=0.014 Sum_probs=113.2
Q ss_pred cCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCC----------CCCchhhhhhcCC---CceEEEecc-----
Q 027129 30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWIGH---PRFELIRHD----- 89 (228)
Q Consensus 30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~~~---~~~~~~~~d----- 89 (228)
.++|+++||||+ |+||++++++|+++| ++|++++|+. ....+....+... ........|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCC-CeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 347899999999 999999999999999 9999987521 0111111111110 002222222
Q ss_pred ---CC----C--------cc------------cCCccEEEEccCCCC--ccc----ccCCchhhHHhhHHHHHHHHHHHH
Q 027129 90 ---VT----E--------PL------------LIEVDQIYHLACPAS--PIF----YKYNPVKTIKTNVIGTLNMLGLAK 136 (228)
Q Consensus 90 ---~~----~--------~~------------~~~~D~vi~~a~~~~--~~~----~~~~~~~~~~~n~~~~~~l~~~~~ 136 (228)
+. + .. +.++|++||+||... ... ..++++..+++|+.++..+++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 21 1 11 126999999998642 111 123356788999999999999987
Q ss_pred Hc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC-ChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccC
Q 027129 137 RV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG 208 (228)
Q Consensus 137 ~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~-~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G 208 (228)
.. +.+||++||...+.. .... ..|+.+|...+.+.+.++.+ +|+++++++||.+.+
T Consensus 165 ~~m~~~g~iv~isS~~~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T 228 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERI----------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHhccCceEEEEeccccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence 54 238999999865421 1111 46999999999999998765 589999999999999
Q ss_pred CCCC
Q 027129 209 PRMN 212 (228)
Q Consensus 209 ~~~~ 212 (228)
+...
T Consensus 229 ~~~~ 232 (297)
T 1d7o_A 229 RAAK 232 (297)
T ss_dssp CCSS
T ss_pred chhh
Confidence 8644
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=135.64 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=122.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC--chhh-hhhc-CCCceEEEeccCCCccc-----------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNL-RKWI-GHPRFELIRHDVTEPLL-----------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~-~~~~-~~~~~~~~~~d~~~~~~-----------~ 96 (228)
+++++||||+|+||.+++++|.++|..+|+++.|+.... .+.+ ..+. ...++.++.+|++|... .
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 489999999999999999999999933888888853221 1111 1221 13478899999998631 2
Q ss_pred CccEEEEccCCC-Ccccc----cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPA-SPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 97 ~~D~vi~~a~~~-~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++|+|||+||.. ..... .++....++.|+.++.++.+++...+. +||++||...+-. .
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g----------------~ 382 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWG----------------S 382 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTT----------------C
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCC----------------C
Confidence 699999999976 32211 123467889999999999999988776 8999999754321 1
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.....|+.+|...+.+.+.+. ..|++++.|.||.+.+++..
T Consensus 383 ~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~ 423 (496)
T 3mje_A 383 GGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMA 423 (496)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-
T ss_pred CCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccc
Confidence 223679999999999988765 45999999999998876654
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=139.78 Aligned_cols=159 Identities=14% Similarity=-0.005 Sum_probs=106.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC---------CCCCchhhhhhcCCCceEEEeccCCCcc-----
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---------FTGSKDNLRKWIGHPRFELIRHDVTEPL----- 94 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 94 (228)
..++|+++||||+|+||++++++|+++| ++|++++|. .....+....+.... .. ...|+++..
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~G-a~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAERG-AKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG-GE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEC--------------CHHHHHHHHHHTT-CC-EEECCCCGGGHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcccccccCCHHHHHHHHHHHHHhC-Ce-EEEEeCCHHHHHHH
Confidence 3458999999999999999999999999 999999872 111111111221111 11 124555542
Q ss_pred -------cCCccEEEEccCCCCcccc----cCCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCC
Q 027129 95 -------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHP 158 (228)
Q Consensus 95 -------~~~~D~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~ 158 (228)
+.++|++|||||....... .++++..+++|+.++..+.+++ ++.+. +||++||...+..
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~----- 167 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYG----- 167 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHC-----
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC-----
Confidence 1269999999998654322 2345678899999999999887 44454 8999999754321
Q ss_pred CCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccc
Q 027129 159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNT 206 (228)
Q Consensus 159 ~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i 206 (228)
......|+.+|...+.+.+.++.++ ||+++.+.|+.+
T Consensus 168 -----------~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~ 207 (613)
T 3oml_A 168 -----------NFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA 207 (613)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--
T ss_pred -----------CCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC
Confidence 1233679999999999999998764 899999999865
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=132.14 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=117.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCe-EEEE-cCCCCC-------------CchhhhhhcC-CCceEEEeccCCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVV-DNYFTG-------------SKDNLRKWIG-HPRFELIRHDVTE 92 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~-~r~~~~-------------~~~~~~~~~~-~~~~~~~~~d~~~ 92 (228)
..++++++||||+|+||.+++++|.+.| .+ |+++ .|+... ..+....+.. ...+.++.+|++|
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G-~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd 326 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDG-AGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD 326 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHT-CCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcC-CCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence 4558999999999999999999999999 55 6666 775322 1122222211 2468899999998
Q ss_pred ccc-----------CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcC-----C-eEEEEccceec
Q 027129 93 PLL-----------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVY 151 (228)
Q Consensus 93 ~~~-----------~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~-----~-r~i~~Ss~~~y 151 (228)
... .++|+|||+||........ ++.+..++.|+.++.++.+++.... . +||++||...+
T Consensus 327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~ 406 (525)
T 3qp9_A 327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI 406 (525)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence 632 3689999999986543222 2346778999999999999988765 5 89999998654
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccc
Q 027129 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206 (228)
Q Consensus 152 ~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i 206 (228)
-. ....+.|+.+|...+.+.+.+.. .|++++.|.||.+
T Consensus 407 ~g----------------~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~ 444 (525)
T 3qp9_A 407 WG----------------GAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPW 444 (525)
T ss_dssp TC----------------CTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCB
T ss_pred CC----------------CCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcc
Confidence 21 12236799999999988765543 4999999999998
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=124.21 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=110.3
Q ss_pred cCCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCCC----------CCchhhhhhcCCC---ceEEEecc-----
Q 027129 30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFT----------GSKDNLRKWIGHP---RFELIRHD----- 89 (228)
Q Consensus 30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~----------~~~~~~~~~~~~~---~~~~~~~d----- 89 (228)
..+|+++|||| +|+||++++++|+++| ++|++++|+.. ...+....+.... ...+...|
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAG-ARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTT-CEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCC-CEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 34789999999 8999999999999999 99999976310 0111111111100 02333332
Q ss_pred -------CCC--------cc------------cCCccEEEEccCCCC---cccc---cCCchhhHHhhHHHHHHHHHHHH
Q 027129 90 -------VTE--------PL------------LIEVDQIYHLACPAS---PIFY---KYNPVKTIKTNVIGTLNMLGLAK 136 (228)
Q Consensus 90 -------~~~--------~~------------~~~~D~vi~~a~~~~---~~~~---~~~~~~~~~~n~~~~~~l~~~~~ 136 (228)
+++ .. +.++|++||+||... .... .++++..+++|+.++..+++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 221 11 126999999999642 1111 13345778999999999999886
Q ss_pred Hc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC-ChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccC
Q 027129 137 RV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG 208 (228)
Q Consensus 137 ~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~-~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G 208 (228)
.. +.+||++||...+.. .... ..|+.+|...+.+.+.++.+ +|++++.++||.|..
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T 229 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERV----------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSC----------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHhcCCEEEEEeccccccc----------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence 53 238999999865421 1111 36999999999999988765 489999999999876
Q ss_pred C
Q 027129 209 P 209 (228)
Q Consensus 209 ~ 209 (228)
+
T Consensus 230 ~ 230 (315)
T 2o2s_A 230 R 230 (315)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=124.82 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=97.4
Q ss_pred CCCEEEEecC--cchhHHHHHHHHHhcCCCeEEEEcCCC-----------CCCch----------hh-hhhcCCC----c
Q 027129 31 SNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYF-----------TGSKD----------NL-RKWIGHP----R 82 (228)
Q Consensus 31 ~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~-----------~~~~~----------~~-~~~~~~~----~ 82 (228)
++|+++|||| +++||++++++|+++| ++|++++|+. ....+ .. ..+.... .
T Consensus 8 ~~k~~lVTGa~~s~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 8 RGKTAFVAGVADSNGYGWAICKLLRAAG-ARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp TTCEEEEECCCCTTSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCC-CEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 4789999999 8999999999999999 9999997631 10000 00 0000000 0
Q ss_pred eEEEeccC------------CC--------cc------------cCCccEEEEccCCCC--ccc----ccCCchhhHHhh
Q 027129 83 FELIRHDV------------TE--------PL------------LIEVDQIYHLACPAS--PIF----YKYNPVKTIKTN 124 (228)
Q Consensus 83 ~~~~~~d~------------~~--------~~------------~~~~D~vi~~a~~~~--~~~----~~~~~~~~~~~n 124 (228)
..++..|. ++ .. +.++|++||+||... ... ..++++..+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 23333332 21 10 126999999998642 111 113345778999
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCC-ChHHHhHHHHHHHHHHHHHH----hCC
Q 027129 125 VIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGI 196 (228)
Q Consensus 125 ~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~-~~y~~sK~~~e~~~~~~~~~----~~i 196 (228)
+.++..+++++... +.+||++||...+.. .... ..|+.+|...+.+.+.++.+ +|+
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gI 230 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKV----------------IPGYGGGMSSAKAALESDCRTLAFEAGRARAV 230 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEeccccccc----------------cCccchhhHHHHHHHHHHHHHHHHHhccccCe
Confidence 99999999988654 238999999865421 1111 46999999999999988765 589
Q ss_pred cEEEeeeccccCCC
Q 027129 197 EIRIARIFNTYGPR 210 (228)
Q Consensus 197 ~~~ilRp~~i~G~~ 210 (228)
++++++||.|..+.
T Consensus 231 rvn~v~PG~v~T~~ 244 (319)
T 2ptg_A 231 RVNCISAGPLKSRA 244 (319)
T ss_dssp EEEEEEECCCC---
T ss_pred eEEEEeeCCccChh
Confidence 99999999997763
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=118.57 Aligned_cols=161 Identities=8% Similarity=-0.046 Sum_probs=113.5
Q ss_pred CCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCC---------CCCchhhhhh----cCCCceEEEeccCCCc--c
Q 027129 32 NMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKW----IGHPRFELIRHDVTEP--L 94 (228)
Q Consensus 32 ~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~~~~~~~~----~~~~~~~~~~~d~~~~--~ 94 (228)
+|+++||||++ +||++++++|++.| ++|++..|.. .+........ .....+.++.+|+++. .
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G-~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCC-CEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 68999999875 99999999999999 9999766532 1111111100 0112467778888765 3
Q ss_pred ------------------c------------CCccEEEEccCCCC--ccc-c---cCCchhhHHhhHHHHHHHHHHHHHc
Q 027129 95 ------------------L------------IEVDQIYHLACPAS--PIF-Y---KYNPVKTIKTNVIGTLNMLGLAKRV 138 (228)
Q Consensus 95 ------------------~------------~~~D~vi~~a~~~~--~~~-~---~~~~~~~~~~n~~~~~~l~~~~~~~ 138 (228)
. .++|++||+||... ... . .++++..+++|+.++..+.+++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 16999999999642 111 1 1335678899999999999987653
Q ss_pred C---CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCC-hHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccCC
Q 027129 139 G---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 139 ~---~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~-~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G~ 209 (228)
= .+||++||...+. +..... .|+.+|...+.+.+.++.+ +|++++.+.||.|..+
T Consensus 161 m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQK----------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 1 3899999986542 111222 6999999999999988754 5899999999998764
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-14 Score=122.33 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=113.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccC-CCcc---------cCCcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDV-TEPL---------LIEVD 99 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~-~~~~---------~~~~D 99 (228)
++|+++||||++.||++++++|.++| ++|++.++.. ..+....+.. ...+.....|+ .+.. +.++|
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iD 397 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYG-AKVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTID 397 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCC-CEEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999 9999987621 2222222211 23455667777 4321 23799
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
++|||||........ ++++..+++|+.++..+.+++. +.+. +||++||...+- +.
T Consensus 398 iLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~----------------~~ 461 (604)
T 2et6_A 398 ILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY----------------GN 461 (604)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------------CC
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------------CC
Confidence 999999976543222 3356788999999998888653 3444 899999985431 11
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeecc
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFN 205 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~ 205 (228)
.....|+.||.....+.+.++.+ +||+++.|.|+.
T Consensus 462 ~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~ 499 (604)
T 2et6_A 462 FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA 499 (604)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC
Confidence 12357999999999999998876 489999999983
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-13 Score=112.19 Aligned_cols=165 Identities=13% Similarity=0.004 Sum_probs=114.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHh-cCCCeEEEEcCCCCCCch-----------hhhhh-c-CCCceEEEeccCCCcc-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKD-----------NLRKW-I-GHPRFELIRHDVTEPL- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~-----------~~~~~-~-~~~~~~~~~~d~~~~~- 94 (228)
..+|+++||||++.||+++++.|.+ .| .+|++++|....... ..... . ....+..+.+|+++..
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~G-A~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCG-ADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcC-CEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 4579999999999999999999999 99 999999885544321 11111 1 1245778899999863
Q ss_pred -----------cCCccEEEEccCCCC-------------ccc-------------------------ccCCchhhHHhhH
Q 027129 95 -----------LIEVDQIYHLACPAS-------------PIF-------------------------YKYNPVKTIKTNV 125 (228)
Q Consensus 95 -----------~~~~D~vi~~a~~~~-------------~~~-------------------------~~~~~~~~~~~n~ 125 (228)
+.++|++||+||... ... ..++++..+++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 237999999998741 001 1122345566676
Q ss_pred HHHH-HHHHHHHHc-----CCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---h-C
Q 027129 126 IGTL-NMLGLAKRV-----GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---H-G 195 (228)
Q Consensus 126 ~~~~-~l~~~~~~~-----~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~-~ 195 (228)
.+.. .+++++... +.++|++||...... .+......|+.+|...+.+.+.++.+ + |
T Consensus 204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~--------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G 269 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT--------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGG 269 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 6554 445544322 238999999864311 12222267999999999999999876 4 8
Q ss_pred CcEEEeeeccccCC
Q 027129 196 IEIRIARIFNTYGP 209 (228)
Q Consensus 196 i~~~ilRp~~i~G~ 209 (228)
++++++-||.|-.+
T Consensus 270 IRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 270 GDARVSVLKAVVSQ 283 (405)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEEeCCCcCc
Confidence 99999999988665
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=120.30 Aligned_cols=154 Identities=16% Similarity=0.077 Sum_probs=107.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC--------CCchh-hhhhcCC-CceEEEeccCCCcc------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--------GSKDN-LRKWIGH-PRFELIRHDVTEPL------ 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--------~~~~~-~~~~~~~-~~~~~~~~d~~~~~------ 94 (228)
++|+++||||++.||++++++|.++| ++|++.+|... ...+. ..++... .... .|..+..
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~G-a~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~---~d~~d~~~~~~~v 82 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLG-AKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAV---ADYNNVLDGDKIV 82 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECC-----------CHHHHHHHHHHHTTCEEE---EECCCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcC-CEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEE---EEcCCHHHHHHHH
Confidence 47899999999999999999999999 99999887431 11111 1122111 1222 2444331
Q ss_pred ------cCCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCC
Q 027129 95 ------LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQ 159 (228)
Q Consensus 95 ------~~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~ 159 (228)
+.++|++|||||........ ++++..+++|+.++..+.+++ ++.+. +||++||...+-.
T Consensus 83 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~------ 156 (604)
T 2et6_A 83 ETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG------ 156 (604)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC------
Confidence 23799999999976433222 335678899999998888765 34444 9999999754311
Q ss_pred CCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeec
Q 027129 160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF 204 (228)
Q Consensus 160 ~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~ 204 (228)
......|+.+|.....+.+.++.+ +||+++.|.|+
T Consensus 157 ----------~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg 194 (604)
T 2et6_A 157 ----------NFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL 194 (604)
T ss_dssp ----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence 112357999999999999999876 48999999996
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=112.80 Aligned_cols=166 Identities=13% Similarity=-0.040 Sum_probs=113.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHh-cCCCeEEEEcCCCCCCchh-----------h-hhhc-CCCceEEEeccCCCcc--
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDN-----------L-RKWI-GHPRFELIRHDVTEPL-- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~-----------~-~~~~-~~~~~~~~~~d~~~~~-- 94 (228)
.+|++|||||++.||+++++.|.+ .| .+|++++|......+. . .... ....+..+++|+++..
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~G-A~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFG-ADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 478999999999999999999999 99 9999998865543321 1 1111 1235778899999862
Q ss_pred ----------c-CCccEEEEccCCC-------------Ccccc-------------------------cCCchhhHHhhH
Q 027129 95 ----------L-IEVDQIYHLACPA-------------SPIFY-------------------------KYNPVKTIKTNV 125 (228)
Q Consensus 95 ----------~-~~~D~vi~~a~~~-------------~~~~~-------------------------~~~~~~~~~~n~ 125 (228)
+ .++|++||+||.. ..... .++....+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 3 5799999999862 10010 111233445554
Q ss_pred HHHH-HHHHHHHHcC-----CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CC
Q 027129 126 IGTL-NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GI 196 (228)
Q Consensus 126 ~~~~-~l~~~~~~~~-----~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i 196 (228)
.+.. .+++++.... .++|++||...... .+......|+.+|...+.+.+.++.++ ||
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~--------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GI 284 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEIT--------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGG 284 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG--------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCccCE
Confidence 4443 4555544322 37999999854311 011112569999999999999998764 89
Q ss_pred cEEEeeeccccCCCC
Q 027129 197 EIRIARIFNTYGPRM 211 (228)
Q Consensus 197 ~~~ilRp~~i~G~~~ 211 (228)
+++++.||.|-.+..
T Consensus 285 RVNaVaPG~i~T~~~ 299 (422)
T 3s8m_A 285 GANVAVLKSVVTQAS 299 (422)
T ss_dssp EEEEEEECCCCCTTG
T ss_pred EEEEEEcCCCcChhh
Confidence 999999999977653
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=124.84 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=120.1
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHH-hcCCCeEEEEcCCCCCC---chhhhhhcC-CCceEEEeccCCCccc--------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGS---KDNLRKWIG-HPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~d~~~~~~-------- 95 (228)
+..+++++||||+|.||++++++|. +.|..+|++++|+.... .+...++.. ..++.++.+|+++...
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3457999999999999999999999 78834699999963322 122222221 3468899999998631
Q ss_pred ---CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+||........ ++++..++.|+.++.++.+++.. ..+||++||...+-.
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l~iV~~SS~ag~~g--------------- 670 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DVALVLFSSVSGVLG--------------- 670 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TSEEEEEEETHHHHT---------------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CCEEEEEccHHhcCC---------------
Confidence 2699999999986543322 33567789999999999998732 228999999865421
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.+.. .|++++.|-||.+-.++
T Consensus 671 -~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g 710 (795)
T 3slk_A 671 -SGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHG 710 (795)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcch
Confidence 12236799999988888777654 49999999999887654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.4e-13 Score=127.11 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=115.5
Q ss_pred cCCCEEEEecCcch-hHHHHHHHHHhcCCCeEEEEc-CCCCCCchhhhhh---cC--CCceEEEeccCCCcc--------
Q 027129 30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKW---IG--HPRFELIRHDVTEPL-------- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~---~~--~~~~~~~~~d~~~~~-------- 94 (228)
..+|+++||||+++ ||+++++.|++.| ++|++++ |+.....+....+ .. ...+.++.+|+++..
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~G-A~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 34689999999998 9999999999999 9999984 5322211111111 11 246788999999862
Q ss_pred ---------cC-CccEEEEccCCCCcc-ccc------CCchhhHHhhHHHHHHHHHHHHHc------C-CeEEEEcccee
Q 027129 95 ---------LI-EVDQIYHLACPASPI-FYK------YNPVKTIKTNVIGTLNMLGLAKRV------G-ARILLTSTSEV 150 (228)
Q Consensus 95 ---------~~-~~D~vi~~a~~~~~~-~~~------~~~~~~~~~n~~~~~~l~~~~~~~------~-~r~i~~Ss~~~ 150 (228)
+. ++|++|||||..... ... ++....+++|+.++..++++++.. + .+||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 12 599999999976433 221 234678899999999999887432 1 27999999753
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH-HHHHHHHhC--CcEEEeeeccccCC
Q 027129 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL-MFDYHRQHG--IEIRIARIFNTYGP 209 (228)
Q Consensus 151 y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~-~~~~~~~~~--i~~~ilRp~~i~G~ 209 (228)
+.. ....|+.+|...+.+ .+.++.+++ |+++.+.||.+.+.
T Consensus 832 ~~g------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT 875 (1887)
T 2uv8_A 832 TFG------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 875 (1887)
T ss_dssp CSS------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC
T ss_pred ccC------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccc
Confidence 311 225699999999998 666665443 99999999999853
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=108.06 Aligned_cols=165 Identities=10% Similarity=-0.105 Sum_probs=111.2
Q ss_pred cCCCEEEEecCcchhHHH--HHHHHHhcCCCeEEEEcCCCCCCc-----------hhhhhhc--CCCceEEEeccCCCcc
Q 027129 30 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWI--GHPRFELIRHDVTEPL 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~--~~~~~~~~~~d~~~~~ 94 (228)
..+|+++||||++.||++ +++.|.+.| .+|+++.|...... +...+.. ....+..+++|+++..
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~G-a~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPE-AHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSC-CEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCC-CEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 458999999999999999 999999999 99999998655432 2222221 1245788999999863
Q ss_pred ------------cCCccEEEEccCCCC-------------cccc-------------------------cCCchhhHHhh
Q 027129 95 ------------LIEVDQIYHLACPAS-------------PIFY-------------------------KYNPVKTIKTN 124 (228)
Q Consensus 95 ------------~~~~D~vi~~a~~~~-------------~~~~-------------------------~~~~~~~~~~n 124 (228)
+.++|++||+||... .... .++....+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 236999999998741 0000 01122334444
Q ss_pred HHHHH-HHHHHHHHcC-----CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH----h
Q 027129 125 VIGTL-NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----H 194 (228)
Q Consensus 125 ~~~~~-~l~~~~~~~~-----~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~----~ 194 (228)
..+.. .+++++.... .++|++||...... .|......|+.+|...+.+.+.++.+ +
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~ 282 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVI 282 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44333 4445544332 37999999753211 12222267999999999999998765 5
Q ss_pred CCcEEEeeeccccCC
Q 027129 195 GIEIRIARIFNTYGP 209 (228)
Q Consensus 195 ~i~~~ilRp~~i~G~ 209 (228)
|++++++.||.|-.+
T Consensus 283 GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 283 GGRAFVSVNKALVTK 297 (418)
T ss_dssp SCEEEEEECCCCCCH
T ss_pred CeEEEEEECCcCcCh
Confidence 899999999998764
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=126.11 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=113.6
Q ss_pred CCCEEEEecCcch-hHHHHHHHHHhcCCCeEEEE-cCCCCCCchhhhhhcC-----CCceEEEeccCCCcc---------
Q 027129 31 SNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPL--------- 94 (228)
Q Consensus 31 ~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~--------- 94 (228)
.+|+++||||+|+ ||++++++|++.| ++|+++ .|......+....+.. ...+.++.+|+++..
T Consensus 475 ~GKvALVTGASgGGIGrAIAr~LA~~G-A~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I 553 (1688)
T 2pff_A 475 KDKYVLITGAGKGSIGAEVLQGLLQGG-AKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 553 (1688)
T ss_dssp CSCCEEECSCSSSSTHHHHHHHHHHHT-CEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHHCc-CEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 4689999999998 9999999999999 999988 4543333332222211 236788999999862
Q ss_pred --------cC-CccEEEEccCCCCcc-ccc------CCchhhHHhhHHHHHHHHHHHHH--c----C-CeEEEEccceec
Q 027129 95 --------LI-EVDQIYHLACPASPI-FYK------YNPVKTIKTNVIGTLNMLGLAKR--V----G-ARILLTSTSEVY 151 (228)
Q Consensus 95 --------~~-~~D~vi~~a~~~~~~-~~~------~~~~~~~~~n~~~~~~l~~~~~~--~----~-~r~i~~Ss~~~y 151 (228)
+. ++|++||+||..... ... ++....+++|+.++..++++++. . + .+||++||...+
T Consensus 554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~ 633 (1688)
T 2pff_A 554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 633 (1688)
T ss_dssp HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence 11 589999999976433 221 22357789999999999888732 1 2 279999997432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHH-HHHHHHHh--CCcEEEeeeccccCC
Q 027129 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL-MFDYHRQH--GIEIRIARIFNTYGP 209 (228)
Q Consensus 152 ~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~-~~~~~~~~--~i~~~ilRp~~i~G~ 209 (228)
. + ....|+.+|+..+.+ .+.++++. .++++.+.||.+.++
T Consensus 634 ~----------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT 676 (1688)
T 2pff_A 634 F----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGT 676 (1688)
T ss_dssp S----------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCC
T ss_pred c----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCC
Confidence 1 1 235699999999998 44444433 289999999999853
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-12 Score=122.34 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=112.8
Q ss_pred cCCCEEEEecCcch-hHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhh---cC--CCceEEEeccCCCcc--------
Q 027129 30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW---IG--HPRFELIRHDVTEPL-------- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~---~~--~~~~~~~~~d~~~~~-------- 94 (228)
..+++++||||+|+ ||++++++|++.| ++|+++++..... .+....+ .. ...+.++.+|+++..
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~G-A~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGG-AKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCC-CEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 34689999999999 9999999999999 8999985422211 1111111 11 246888999999852
Q ss_pred -------cC-CccEEEEccCCCCcc-ccc------CCchhhHHhhHHHHHHHHHHHHH------cCC-eEEEEccceecc
Q 027129 95 -------LI-EVDQIYHLACPASPI-FYK------YNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYG 152 (228)
Q Consensus 95 -------~~-~~D~vi~~a~~~~~~-~~~------~~~~~~~~~n~~~~~~l~~~~~~------~~~-r~i~~Ss~~~y~ 152 (228)
+. ++|++|||||..... ... ++....+++|+.++..+++.++. .+. +||++||...+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 22 589999999976432 222 22467889999999988876321 122 799999975431
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH-h--CCcEEEeeeccccC
Q 027129 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-H--GIEIRIARIFNTYG 208 (228)
Q Consensus 153 ~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~-~--~i~~~ilRp~~i~G 208 (228)
. ....|+.+|...+.+.+.+..+ . .++++.+.||.+-|
T Consensus 809 g------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~g 849 (1878)
T 2uv9_A 809 G------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRG 849 (1878)
T ss_dssp S------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCC
T ss_pred C------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceec
Confidence 1 1246999999999998766543 2 39999999999873
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-11 Score=117.93 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=113.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hhhhhc-CCCceEEEeccCCCccc---------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWI-GHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~-~~~~~~~~~~d~~~~~~--------- 95 (228)
+..+++++||||+|.||++++++|.++|...|++++|+..+... ....+. ...++..+.+|+++...
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999999993348888886544321 122221 12467888999998632
Q ss_pred --CCccEEEEccCCCCccc----ccCCchhhHHhhHHHHHHHHHHHHHc--CC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||...... ..++....++.|+.++.++.+++... .. +||++||....-.
T Consensus 1961 ~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g------------- 2027 (2512)
T 2vz8_A 1961 QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRG------------- 2027 (2512)
T ss_dssp HHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTT-------------
T ss_pred hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCC-------------
Confidence 36999999999754322 23456778899999999998887653 22 8999999864321
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G 208 (228)
......|+.+|...+.+.+....+ |++...+-.+.+-+
T Consensus 2028 ---~~g~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2028 ---NAGQANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 112357999999999998876655 89888888776543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=92.84 Aligned_cols=166 Identities=12% Similarity=0.069 Sum_probs=101.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCC----CCCCchhhhhhcCC--C-ceEEEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNY----FTGSKDNLRKWIGH--P-RFELIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~----~~~~~~~~~~~~~~--~-~~~~~~~d~~~~~~~~~ 98 (228)
.|||+||||+||+|++++..|+..+. .+|+++++. ..+......++.+. . ..++...+-....+.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 57999999999999999999998872 279998884 11111111112111 1 11222111112346689
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C--eEEEEcccee---ccCCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEV---YGDPLVHPQDESYWGNVNPIGV 172 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--r~i~~Ss~~~---y~~~~~~~~~e~~~~~~~~~~~ 172 (228)
|+|||+||.... ........+..|+..++++++.+.+++ . +||++|...- |--.. ..+. -| +
T Consensus 85 D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~---~~~~-----~p--~ 152 (329)
T 1b8p_A 85 DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMK---SAPS-----LP--A 152 (329)
T ss_dssp SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH---TCTT-----SC--G
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHH---HcCC-----CC--H
Confidence 999999985432 233445678999999999999999984 4 7888886320 10000 0000 01 1
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
...++.++.-..++...+++..|++...++...|+|.
T Consensus 153 ~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 153 KNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred HHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 1236666666677777777777887776775566773
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.1e-09 Score=103.63 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=107.8
Q ss_pred CCCEEEEecCcch-hHHHHHHHHHhcCCCeEEEEcCCCCCC----chhh-hhhcC-CCceEEEeccCCCcc---------
Q 027129 31 SNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVDNYFTGS----KDNL-RKWIG-HPRFELIRHDVTEPL--------- 94 (228)
Q Consensus 31 ~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~~-~~~~~-~~~~~~~~~d~~~~~--------- 94 (228)
++|+++||||++. ||+++++.|++.| .+|++.+|+.... .+.. ..... ...+..+.+|+++..
T Consensus 2135 ~gKvaLVTGAs~GsIG~AiA~~La~~G-A~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2135 XDEVAVVTGASKGSIAASVVGQLLDGG-ATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCEEEEESCCTTSHHHHHHHHHHHTT-CEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHHCC-CEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 4799999999999 9999999999999 9999999854431 1111 12211 235677889999852
Q ss_pred -------cCCccEEEEccCCC----Cc-----ccccCCch----hhHHhhHHHHHHHHHHHHH----cCC----eEEEEc
Q 027129 95 -------LIEVDQIYHLACPA----SP-----IFYKYNPV----KTIKTNVIGTLNMLGLAKR----VGA----RILLTS 146 (228)
Q Consensus 95 -------~~~~D~vi~~a~~~----~~-----~~~~~~~~----~~~~~n~~~~~~l~~~~~~----~~~----r~i~~S 146 (228)
+.++|++|||||.. .. .....+.. ..+++|+.++..+++.+.. .+. .+|..+
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 23599999999971 10 01112222 3378888888887776543 332 222222
Q ss_pred cceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH--h--CCcEEEeeeccccCCC
Q 027129 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ--H--GIEIRIARIFNTYGPR 210 (228)
Q Consensus 147 s~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~--~--~i~~~ilRp~~i~G~~ 210 (228)
|. ..+ .......|+.||...+.+.+.++.+ . +++++.+.||.+-+.+
T Consensus 2294 ss-~~g----------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~ 2344 (3089)
T 3zen_D 2294 SP-NRG----------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTG 2344 (3089)
T ss_dssp CS-STT----------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECST
T ss_pred Cc-ccc----------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCc
Confidence 21 111 0111246999999999999999888 3 5889999999987554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.5e-09 Score=72.97 Aligned_cols=92 Identities=22% Similarity=0.140 Sum_probs=68.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
+|+|+|+|+ |++|+.+++.|.+.|.++|++++| ..+...... ...+.....|+.+.. ..++|+||++++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r----~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADH----DLAALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEES----CHHHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeC----CHHHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 679999999 999999999999998678999999 333333332 345777888887742 348999999984
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
.. ....+++++.+.+++++.+|+
T Consensus 79 ~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 79 FF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp GG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred ch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 21 125788888888886665554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=85.56 Aligned_cols=112 Identities=14% Similarity=0.056 Sum_probs=75.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcC--CCCCCch---hhhhhc-CCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDN--YFTGSKD---NLRKWI-GHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r--~~~~~~~---~~~~~~-~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||+|+||+|++|.+++..|+..+. .++.++++ ...+... .+.... ....+.+...+ ...+.++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 6899999999999999999988762 36888877 3211111 111110 01233443332 45577999999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~ 148 (228)
|.... ........+..|+..++++++.+++.+. .+|+++|-
T Consensus 79 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 79 GIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 85432 2233456789999999999999999876 56666664
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.5e-09 Score=84.81 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=75.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcC--CCCCCch---hhhhhcCC--CceEEEecc-CCCcccCCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDN--YFTGSKD---NLRKWIGH--PRFELIRHD-VTEPLLIEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r--~~~~~~~---~~~~~~~~--~~~~~~~~d-~~~~~~~~~D~vi~ 103 (228)
|||+||||+|++|++++..|+..+. .++.++++ ...+... .+...... ..+++...+ .....+.++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 6899999999999999999998762 36777876 2111110 11111111 233444332 23445779999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~ 148 (228)
+||... .........++.|+..++++++++++++.++|+++|-
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SN 123 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITN 123 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSS
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 998543 2223445678999999999999999876436666653
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-09 Score=84.73 Aligned_cols=113 Identities=14% Similarity=0.000 Sum_probs=75.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC---CceEEEecc-CCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH---PRFELIRHD-VTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d-~~~~~~~~~D~vi~~a~ 106 (228)
+|||+|+||+|++|..++..|+..+. ++|+++++... .....++... ..+..+... -....+.++|+|||++|
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 57999999999999999999988752 57888887432 2121122211 122221111 11234578999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~ 148 (228)
.... ........+..|+..++++++.+.+.+. .+|+++|-
T Consensus 86 ~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 86 VPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred cCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 5332 2233456689999999999999999876 56666663
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-06 Score=69.16 Aligned_cols=164 Identities=12% Similarity=-0.030 Sum_probs=99.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHH-hcCCCeEEEEcCCCCCCchh-----------hhhhc--CCCceEEEeccCCCcc-
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDN-----------LRKWI--GHPRFELIRHDVTEPL- 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~d~~~~~- 94 (228)
..+|++|||||++.+|.+.+..|. +.| ..++++.+........ ..+.. .......+++|+.+..
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~G-A~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYG-AATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHC-CEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCC-CCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 347999999999999999999987 678 7888888755543221 11111 1246788999999863
Q ss_pred -----------cCCccEEEEccCCCCcccc------------------------cCC-c-----hhhHHhhHHHHH----
Q 027129 95 -----------LIEVDQIYHLACPASPIFY------------------------KYN-P-----VKTIKTNVIGTL---- 129 (228)
Q Consensus 95 -----------~~~~D~vi~~a~~~~~~~~------------------------~~~-~-----~~~~~~n~~~~~---- 129 (228)
+.++|++||++|....... ..+ . +...+.++..+.
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 2379999999986531100 000 0 000111222222
Q ss_pred -----HHHHHHHHcC-----CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh-CCcE
Q 027129 130 -----NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEI 198 (228)
Q Consensus 130 -----~l~~~~~~~~-----~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~-~i~~ 198 (228)
....+....+ .++|-+|+.+..- .. |.-....++.+|...|..++.++.+. ++++
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~---t~-----------P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a 272 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEA---TQ-----------ALYRKGTIGKAKEHLEATAHRLNKENPSIRA 272 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG---GH-----------HHHTTSHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcce---ee-----------cCCCccHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 2233444444 3788888854210 00 10011357999999999999998885 5666
Q ss_pred EEeeeccccC
Q 027129 199 RIARIFNTYG 208 (228)
Q Consensus 199 ~ilRp~~i~G 208 (228)
.++-++.+--
T Consensus 273 ~v~v~~a~vT 282 (401)
T 4ggo_A 273 FVSVNKGLVT 282 (401)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCcccc
Confidence 6666655533
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-08 Score=80.21 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=54.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~vi~~ 104 (228)
..+++++||||+|++|+++++.|++.| .+|++++|+..+..+....+.....+.+...|+++. ...++|+|||+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G-~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ 195 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA 195 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence 347899999999999999999999999 889999994322211111111111345566677653 23468999999
Q ss_pred cCCC
Q 027129 105 ACPA 108 (228)
Q Consensus 105 a~~~ 108 (228)
++.+
T Consensus 196 ag~g 199 (287)
T 1lu9_A 196 GAIG 199 (287)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 9754
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-07 Score=75.88 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=74.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-Ce-----EEEEcCCCC--CCchhhhhhcC--CCce-EEEeccCCCcccCCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NE-----VIVVDNYFT--GSKDNLRKWIG--HPRF-ELIRHDVTEPLLIEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~-----V~~~~r~~~--~~~~~~~~~~~--~~~~-~~~~~d~~~~~~~~~D~ 100 (228)
.+||+||||+|+||.+++..|+..+. .+ ++++++... .......++.+ .... .+...+-....+.++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 47999999999999999999988762 14 888888421 01111111111 1111 11111212235679999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEcc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST 147 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss 147 (228)
||++||... ....+....++.|....+.+++.+.+++. +++.+|.
T Consensus 83 VvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 83 AILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 999998532 22344567789999999999999998864 5777765
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.3e-07 Score=72.29 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=74.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC---CceEEEec-cCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH---PRFELIRH-DVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~-d~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+||+|++|..++..|+..+- ++|+++++.. ......++.+. ..+....+ +-....+.++|+||+++|.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 6899999999999999999987752 6899999954 11121222211 12222211 1112246799999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ........+..|....+.+++.+.+... ++|++|-
T Consensus 79 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 79 PRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 432 2233456678999999999999988764 6777654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-07 Score=62.61 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=64.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
|++|+|+|+ |.+|+.+++.|.+.| ++|++++++ .+....+.. .....+.+|..+.. ..++|+||+++
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d~~----~~~~~~~~~-~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 78 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDIN----EEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAI 78 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEESC----HHHHHTTTT-TCSEEEECCTTCHHHHHTTTGGGCSEEEECC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHH-hCCEEEEeCCCCHHHHHhcCCCCCCEEEECC
Confidence 678999998 999999999999999 899999883 333332222 23456677776532 34799999988
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccce
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 149 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~ 149 (228)
+.. .+.| ..+...+++.+. ++|..++..
T Consensus 79 ~~~------------~~~~----~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 79 GAN------------IQAS----TLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp CSC------------HHHH----HHHHHHHHHTTCSEEEEECCSH
T ss_pred CCc------------hHHH----HHHHHHHHHcCCCeEEEEeCCH
Confidence 521 0222 235566677776 676666543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=60.55 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
+|+|+|+|+ |++|+.+++.|.+.| ++|++++|+ .+....+.....+..+.+|..+.. ..++|+||++.
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~----~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDID----KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECC----HHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 579999986 999999999999999 999999983 333332222124556677766531 34799999987
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
.
T Consensus 78 ~ 78 (140)
T 1lss_A 78 G 78 (140)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-06 Score=72.22 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=68.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCcc-----cCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
.+|+|+|+| +|++|+++++.|++.| ++|++.+|+ .+....+... ..+..+.+|+++.. ..++|+|||+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G-~~V~v~~R~----~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~ 75 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSG-IKVTVACRT----LESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 75 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTT-CEEEEEESS----HHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCc-CEEEEEECC----HHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence 478999998 7999999999999999 899999983 3333333221 24677788887642 3479999999
Q ss_pred cCCCCcccccCCchhhHH--h-------hHHHHHHHHHHHHHcCCeE
Q 027129 105 ACPASPIFYKYNPVKTIK--T-------NVIGTLNMLGLAKRVGARI 142 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~--~-------n~~~~~~l~~~~~~~~~r~ 142 (228)
++...... -....++ . .......+++++++.|+++
T Consensus 76 a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 76 IPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp CC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred CccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 97532110 0011111 1 1235678889999888763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=60.41 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=53.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
|++++|+|+ |.+|+.+++.|.+.| ++|+++++ ..+....+.. ..+.++.+|.++.. ..++|+||.+.
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~----~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDK----SKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEES----CHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEEC----CHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 679999997 999999999999999 99999999 3444433322 35778889988863 24789999876
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-07 Score=75.98 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=64.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----C--CccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----I--EVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~-----~--~~D~ 100 (228)
||+|+|+|| |++|+.+++.|.+.+. ..|++.+|+..+..+....+.. ...+..+..|+++... . ++|+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 589999998 9999999999999883 3899999843322222222111 1257888899887532 1 4899
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~S 146 (228)
|||+++... ...++++|.+.+++++-++
T Consensus 80 Vin~ag~~~------------------~~~v~~a~l~~g~~vvD~a 107 (405)
T 4ina_A 80 VLNIALPYQ------------------DLTIMEACLRTGVPYLDTA 107 (405)
T ss_dssp EEECSCGGG------------------HHHHHHHHHHHTCCEEESS
T ss_pred EEECCCccc------------------ChHHHHHHHHhCCCEEEec
Confidence 999986210 1366778888888766543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=66.84 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=52.0
Q ss_pred CCCEEEEecC----------------cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-
Q 027129 31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93 (228)
Q Consensus 31 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 93 (228)
.+|+|+|||| +|.+|.+++++|++.| ++|+++.|+..-... ....++.+..+....
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~G-a~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em 74 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAG-YEVCLITTKRALKPE------PHPNLSIREITNTKDL 74 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTT-CEEEEEECTTSCCCC------CCTTEEEEECCSHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCC-CEEEEEeCCcccccc------CCCCeEEEEHhHHHHH
Confidence 3799999999 9999999999999999 999999995321110 012466665543321
Q ss_pred ------ccCCccEEEEccCCCC
Q 027129 94 ------LLIEVDQIYHLACPAS 109 (228)
Q Consensus 94 ------~~~~~D~vi~~a~~~~ 109 (228)
.+.++|++|++||...
T Consensus 75 ~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 75 LIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp HHHHHHHGGGCSEEEECSBCCS
T ss_pred HHHHHHhcCCCCEEEEcCcccc
Confidence 2237999999999754
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.4e-06 Score=66.94 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=27.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+|+|.|+|++|.+|+.+++.+.+...++++++.+
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d 38 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE 38 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 5799999999999999999988653378875544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=69.61 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=64.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~a~ 106 (228)
.|||+|+|| |++|+.+++.|.+. ++|.+.++ ..+.+.... ..+..+..|..|.. ..+.|+||++++
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~----~~~~~~~~~--~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p 86 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDV----NNENLEKVK--EFATPLKVDASNFDKLVEVMKEFELVIGALP 86 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEES----CHHHHHHHT--TTSEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEc----CHHHHHHHh--ccCCcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence 579999998 99999999988654 79999888 334443332 24566778887753 348999999885
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~S 146 (228)
.. + ...++++|.++|+++|=+|
T Consensus 87 ~~------------~------~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 87 GF------------L------GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp GG------------G------HHHHHHHHHHHTCEEEECC
T ss_pred Cc------------c------cchHHHHHHhcCcceEeee
Confidence 21 0 1367889999998877665
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.9e-06 Score=66.11 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=74.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchh---hhhhcCC--CceEEEeccCCCcccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKWIGH--PRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~~~--~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
.+|+|.|+|+ |++|..++..|+..+. .+|+++++...+.... +...... ..+.....| .....++|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--YEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--HHHhCCCCEEEEe
Confidence 4689999996 9999999999999882 3899999842221111 1111111 133443333 2456789999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+|... .........++.|....+.+++.+.+... .++.+|-
T Consensus 81 ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 81 AGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 98432 22233456678999999999999988765 5666664
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=64.86 Aligned_cols=112 Identities=18% Similarity=0.086 Sum_probs=75.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-C-CCeEEEEcCCCCCCchhhhhhcCCC-ceEEEe--ccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGHP-RFELIR--HDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g-~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~--~d~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+||+|++|..++..|... + ..+++++++.. +......++.... ...+.. .+-....+.++|+||.+||.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 68999999999999999998875 3 25899999854 2222222222221 222221 12223456799999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
. ..........++.|....+.+.+.+.++.. .++.+|-
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3 222344567789999999999999988764 6676664
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=71.21 Aligned_cols=99 Identities=9% Similarity=0.088 Sum_probs=61.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcC-----CCeEEEEcCCCCC-C-chhhhh-hcCCCceEEEeccCCCcccCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNYFTG-S-KDNLRK-WIGHPRFELIRHDVTEPLLIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g-----~~~V~~~~r~~~~-~-~~~~~~-~~~~~~~~~~~~d~~~~~~~~~D~vi 102 (228)
.||+|.|.||||++|+.+++.|++.+ ..+++++.+.+.. . ...... +.....+.+...| .....++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 46899999999999999999999876 4677777643221 1 111100 1000122222222 22234899999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
.+.+... ...++..+ +.|+++|-+|+...
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADFR 114 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTTT
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCcc
Confidence 9886432 13556666 67789999998754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-05 Score=55.39 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
+++|+|+|+ |.+|+.+++.|.+.| ++|++++|+ .+....+........+.+|..+.. ..++|+||.+.
T Consensus 19 ~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~----~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 19 SKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKN----EYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC----GGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECC----HHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 689999996 999999999999999 999999984 333333221234556667765431 34689999887
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 93 ~ 93 (155)
T 2g1u_A 93 N 93 (155)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=70.25 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=71.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchh---hhhh-cCCCceEEEeccCCCcccCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW-IGHPRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~-~~~~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
+.++||.|+|++|++|..++..|+..|. .+|+++++...+.... +... .....+.+. .| ......++|+||.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t-~d-~~~al~dADvVvit 83 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT-SD-IKEALTDAKYIVSS 83 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEE-SC-HHHHHTTEEEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEc-CC-HHHHhCCCCEEEEc
Confidence 4478999999999999999999988873 5899999843211111 1111 111122211 11 11245689999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--e-EEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--R-ILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r-~i~~Ss 147 (228)
||... .........++.|....+.+++.+.+... . ++.+|-
T Consensus 84 aG~p~--kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 84 GGAPR--KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred cCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 98532 22233456688999999999999988764 3 566654
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8e-06 Score=62.70 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=49.1
Q ss_pred CCCEEEEecC----------------cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-
Q 027129 31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93 (228)
Q Consensus 31 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 93 (228)
.+|+|+|||| +|.+|.+++++|.+.| ++|+++.++.. .. ....++.. |+.+.
T Consensus 7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~G-a~V~l~~~~~~-l~-------~~~g~~~~--dv~~~~ 75 (226)
T 1u7z_A 7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVS-LP-------TPPFVKRV--DVMTAL 75 (226)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCC-CC-------CCTTEEEE--ECCSHH
T ss_pred CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCC-CEEEEEECCcc-cc-------cCCCCeEE--ccCcHH
Confidence 4899999999 6999999999999999 99999887431 11 01233433 33332
Q ss_pred --------ccCCccEEEEccCCCC
Q 027129 94 --------LLIEVDQIYHLACPAS 109 (228)
Q Consensus 94 --------~~~~~D~vi~~a~~~~ 109 (228)
.+.++|++||+||...
T Consensus 76 ~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 76 EMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHHHhcCCCCEEEECCcccC
Confidence 1236999999999754
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-06 Score=67.05 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=65.6
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
.+.+++|.|+|+ |.+|..++..|+..+. .+++++++...+......++.+. ..+.....| .....++|+||.
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi 82 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVI 82 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEE
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEE
Confidence 345789999996 9999999999998872 38999998422211111111110 123333332 345678999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+||... .........++.|....+.+.+.+.++.. .++.+|-
T Consensus 83 ~ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 83 TAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp CCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 998532 21233445678899999999999988764 5666654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-05 Score=63.52 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=72.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcC-----CCceEEE-eccCCCcccCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELI-RHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~d~~~~~~~~~D~vi~ 103 (228)
++++|.|+|+ |.+|..++..|...+ + +|+++++...+......++.. .....+. ..|. ....++|+||.
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~-~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVIi 81 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVIV 81 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEEE
Confidence 3689999998 999999999999998 7 999999954432111111110 0122222 2332 56679999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
++|... .........+..|....+.+++.+.+... .++.+|-
T Consensus 82 aag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 82 TAGVPR--KPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CCSCCC--C-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred ccCcCC--CCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 997532 22223345678899999999999988764 5666664
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-05 Score=63.19 Aligned_cols=111 Identities=15% Similarity=0.058 Sum_probs=74.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|||.|+|| |+||+.++-.|+.++. .++.+++...........++.+ .........+ ...+..+.|+||-.||
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~-d~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES-CGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC-CHHHhCCCCEEEEecC
Confidence 78999996 9999999999988763 6899999843221111111111 1112222221 1235678999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... .........++.|....+.+.+.+.++.. .++.+|-
T Consensus 79 ~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 79 LAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 543 33455667889999999999999998765 5666664
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-05 Score=61.21 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=74.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcCC-----CceEEE-eccCCCcccCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~d~~~~~~~~~D~vi~ 103 (228)
++|+|.|+|+ |.+|..++..|...+ . +|+++++...+......++.+. ....+. ..| ...+.++|+||.
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~-~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVIi 79 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQ-LGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVIV 79 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEEE
Confidence 3689999995 999999999999888 6 8999999543322111122111 122232 223 346678999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
++|... .........+..|....+.+++.+.+... .++.+|-
T Consensus 80 ~ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 80 TAGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 998532 22233455678899999999999988764 5666653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=65.34 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=59.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh---hcCC-CceEEEeccCCCcccCCccEEEEccC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIGH-PRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~~-~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.|++|.|.||+|++|+.+++.|.+....+++++.+...... .... .+.. ..+.+...+ . ..++|+||.+.+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~-~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g 77 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE-PVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALP 77 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS-BGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc-hhHHhCchhcCcccccccchh---H-hcCCCEEEEcCC
Confidence 36899999999999999999998776458888766322211 1111 0110 122222222 2 358999999886
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
... ...++..+.+.|+++|-+|+..
T Consensus 78 ~~~------------------s~~~a~~~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 78 HGV------------------FAREFDRYSALAPVLVDLSADF 102 (345)
T ss_dssp TTH------------------HHHTHHHHHTTCSEEEECSSTT
T ss_pred cHH------------------HHHHHHHHHHCCCEEEEcCccc
Confidence 321 2345556667788999999864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=6.4e-05 Score=60.91 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|||.|+|+ |++|..++-.|+..+ . +|++++.+..+......++.+. ..+.+...| ...+.++|+||.++
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~-~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~~ 82 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTA 82 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEcC
Confidence 579999998 999999999999887 5 8999999654433222222221 133333222 34567999999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEE
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT 145 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~ 145 (228)
+... ............|....+.+++.+.+... .+|.+
T Consensus 83 g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 83 GANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp CC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 7432 11223345678899999999999988654 45544
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=63.73 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=73.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchh---hhhhc--CCCceEEEe-ccCCCcccCCccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDN---LRKWI--GHPRFELIR-HDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~-~d~~~~~~~~~D~vi~~ 104 (228)
|||.|+|+ |.+|.+++..|...+ + +|.++++........ +.... -.....+.. .| .....+.|+||.+
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~-~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEEC
Confidence 68999998 999999999999888 6 899999943321100 11111 001223332 23 5567799999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+|... .........++.|....+.+++.+.+.+. .++.+|-
T Consensus 77 ag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 77 AGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 98532 22233456678899999999999988764 5666664
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=8.6e-06 Score=69.46 Aligned_cols=72 Identities=24% Similarity=0.288 Sum_probs=51.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
..+++|+|+|+ |++|+++++.|++. + ++|++.+|+ .+..+.+.....+..+..|+.+.. ..++|+|||
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g-~~V~v~~R~----~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn 94 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDD-INVTVACRT----LANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVIS 94 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTT-EEEEEEESS----HHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEE
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCC-CeEEEEECC----HHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEE
Confidence 34789999997 99999999999998 6 899999993 333333322124566677776542 237999999
Q ss_pred ccCC
Q 027129 104 LACP 107 (228)
Q Consensus 104 ~a~~ 107 (228)
+++.
T Consensus 95 ~tp~ 98 (467)
T 2axq_A 95 LIPY 98 (467)
T ss_dssp CSCG
T ss_pred CCch
Confidence 9874
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=62.55 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=73.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCCc-h-hhhhhcC--CC-ceEEEeccCCCcccCCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGSK-D-NLRKWIG--HP-RFELIRHDVTEPLLIEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~-~-~~~~~~~--~~-~~~~~~~d~~~~~~~~~D~ 100 (228)
..||.|+||+|.||++++-.|....- .++.+++....... + ...++.. .+ .......+-....+.+.|+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~adv 103 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAI 103 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCE
Confidence 45999999999999999998876531 27888887321110 0 0111111 11 1222223323345679999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEcc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST 147 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss 147 (228)
||-.||... .........++.|....+.+.+.+.++. ++++.+|-
T Consensus 104 Vvi~aG~pr--kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 104 AIMCGAFPR--KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp EEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEECCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 999998543 3335556788999999999999998753 26666664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.1e-05 Score=60.05 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcC-----CCceEEEe-ccCCCcccCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~D~vi~~ 104 (228)
+|||.|+|| |.+|..++..|...| + +|++++++..+......++.. .....+.. .|. ..+.++|+||.+
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~g-~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAKE-LGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVT 77 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEc
Confidence 379999998 999999999999988 5 798988854322211112111 01222222 333 456789999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss 147 (228)
+|..... ..........|....+.+.+.+.+... .+|.+.|
T Consensus 78 ~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 78 SGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp CCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 9753321 122234567888999999999988765 3444444
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.95 E-value=5.6e-05 Score=61.47 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=75.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEE-eccCCCcccCCccEEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELI-RHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~-~~d~~~~~~~~~D~vi~ 103 (228)
..+++|.|+|+ |.+|..++..|+..+. .+|+++++...+......++.+. .....+ ..|. ....++|+||.
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~--~~~~~aDiVvi 93 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY--SVTANSKLVII 93 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG--GGGTTEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH--HHhCCCCEEEE
Confidence 34789999997 9999999999998872 38999998422211111111110 111222 2232 35779999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+||... .........++.|....+.+.+.+.++.. .++.+|-
T Consensus 94 ~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 94 TAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred ccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998533 22344567789999999999999988754 5666664
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.2e-05 Score=62.38 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=60.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC--CCchhhhh----hcCCCceEEEec-cCCCccc-CCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRK----WIGHPRFELIRH-DVTEPLL-IEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~----~~~~~~~~~~~~-d~~~~~~-~~~D~vi~ 103 (228)
|++|.|+||||++|+.+++.|.+....++..+..... .......+ +.......+... |. ..+ .++|+||.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~--~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDI--SEFSPGVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSG--GGTCTTCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCH--HHHhcCCCEEEE
Confidence 7899999999999999999998865478887755331 11111111 111112333322 22 223 58999998
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
|.+.. ....++..+.+.|+++|-+|+..
T Consensus 82 a~p~~------------------~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAHE------------------VSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCChH------------------HHHHHHHHHHHCCCEEEEcCCcc
Confidence 87521 12345555667788999999875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.4e-05 Score=63.27 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCC--CCCchhhhhhc-------CCCceEEEeccCCCcccCCccE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF--TGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQ 100 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~--~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~~~~D~ 100 (228)
.+++|.|+|+ |.+|..++..|...+ + +|+++++.. ........++. ...++... .| ...+.++|+
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g-~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d--~~a~~~aDv 81 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKE-LADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD--YADTADSDV 81 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC--GGGGTTCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC--HHHhCCCCE
Confidence 3579999997 999999999999998 8 999999942 11111111111 11122211 12 345678999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
||.++|... .........++.|....+.+.+.+.+... .++.+|.
T Consensus 82 VIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 82 VVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp EEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 999998532 22234456788999999999999988764 5666664
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.92 E-value=8.9e-05 Score=60.53 Aligned_cols=95 Identities=13% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
|++|.|.||+|++|+.+++.|.+. ...+++++......... . . .....+.+...| .....++|+||.|.+..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~-~-~-~~~~~i~~~~~~--~~~~~~vDvVf~a~g~~- 76 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT-Y-R-FNGKTVRVQNVE--EFDWSQVHIALFSAGGE- 76 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCE-E-E-ETTEEEEEEEGG--GCCGGGCSEEEECSCHH-
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCc-e-e-ecCceeEEecCC--hHHhcCCCEEEECCCch-
Confidence 689999999999999999999887 33577777642111110 0 0 111233333333 22335799999987521
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
.....+..+.+.|+++|-.|+..
T Consensus 77 -----------------~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 77 -----------------LSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence 12455566667888888888874
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.3e-05 Score=61.49 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCC-CCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+|+|.|.||+|++|+.+++.|.+++ ..+++++.... .+.... .....+.+...|. ....++|+||.+.+..
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~g~~i~~~~~~~--~~~~~~DvV~~a~g~~ 79 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FAESSLRVGDVDS--FDFSSVGLAFFAAAAE 79 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ETTEEEECEEGGG--CCGGGCSEEEECSCHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cCCcceEEecCCH--HHhcCCCEEEEcCCcH
Confidence 4789999999999999999998554 24566664311 111100 1111222222222 2245799999988521
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
....++..+.+.|+++|.+|+..
T Consensus 80 ------------------~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 80 ------------------VSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred ------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence 12456667777888888888874
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-05 Score=61.20 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.+||.|+|| |.+|..++-.|+..+. .+|+++++...+......++.+. ..+.+.. + ...++.++|+||.+++
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag 81 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAG 81 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCC
Confidence 479999998 9999999999988861 38999998432221111111111 2333333 2 2445779999999997
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
..... .......+..|....+.+++.+.+... .+|.+|-
T Consensus 82 ~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 82 APQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 53221 222335678899999999999988764 5666643
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.8e-05 Score=62.08 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=72.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|+|.|+|+ |.+|..++..|+..+- .+|++++++..+......++.+ .....+...+ ....+.++|+||.++|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~-~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN-DYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES-SSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC-CHHHhCCCCEEEECCC
Confidence 78999996 9999999999998872 3899999955432211111111 1122332112 2446679999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... .........++.|....+.+.+.+.++.. .++.+|-
T Consensus 79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 532 22234456778999999999999988764 5666664
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.9e-05 Score=60.56 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
..|||.|+|| |.+|..++-.|+..+- .+|+++++...+......++.+. ..+.+.. + ....+.++|+||..+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence 3579999998 9999999999988761 38999998432221111112111 2333333 2 244567999999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+... .........+..|....+.+++.+.++.. .+|.+|-
T Consensus 85 g~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 85 GAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7532 11233345678899999999999888764 5666643
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.87 E-value=5e-05 Score=62.38 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC----------CceEEEeccCCCcccCCccE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ 100 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~D~ 100 (228)
.+++|.|.||+|++|+.+++.|.+....+++++..+.............. ..+.+...|. ....++|+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDv 80 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDV 80 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCE
Confidence 36799999999999999999998775467877752111111111111000 1222322222 22358999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
||.+.+. .....++..+.+.|+++|-.|+..
T Consensus 81 Vf~atp~------------------~~s~~~a~~~~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 81 VLSALPN------------------ELAESIELELVKNGKIVVSNASPF 111 (350)
T ss_dssp EEECCCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred EEECCCh------------------HHHHHHHHHHHHCCCEEEECCccc
Confidence 9987741 113456667778888988888764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00024 Score=57.60 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhh-------cCCCceEEEeccCCCcccCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKW-------IGHPRFELIRHDVTEPLLIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~D~vi 102 (228)
.+|||.|+|| |.+|..++..|...| + .|++++++..+.......+ ....++... .|. ..+.++|+||
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g-~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~Vi 77 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTY--DDLAGADVVI 77 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCG--GGGTTCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCH--HHhCCCCEEE
Confidence 4689999998 999999999999998 6 8999988543222111111 111222221 333 4567999999
Q ss_pred EccCCCCcccccCC-----chhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 103 HLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 103 ~~a~~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
.+++.... .... .......|....+.+++.+.+... .+|.+|
T Consensus 78 ~a~g~p~k--~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 78 VTAGFTKA--PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp ECCSCSSC--TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EeCCCCCC--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99974321 1111 234567788888899888877654 455554
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.8e-05 Score=60.73 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC----------CceEEEeccCCCcccC-CccEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLI-EVDQI 101 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~-~~D~v 101 (228)
++|.|.||+|++|+.+++.|.+.+..+|+++.+++............. ..+.+...|..+ ... ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKH-EEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTS-GGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHH-HhcCCCCEE
Confidence 699999999999999999998775468888864222111111111000 012222223222 223 79999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
|.+.+.. ....++..+.+.|+++|-.|+..
T Consensus 88 ~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 88 FSALPSD------------------LAKKFEPEFAKEGKLIFSNASAY 117 (354)
T ss_dssp EECCCHH------------------HHHHHHHHHHHTTCEEEECCSTT
T ss_pred EECCCch------------------HHHHHHHHHHHCCCEEEECCchh
Confidence 9987521 12345556667788888788764
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-05 Score=56.70 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
.++++|+|+ |.+|+.+++.|.+.| +.|+++++......+...... ...+.++.+|.++.. ..++|.||.+.
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 568999996 999999999999999 999999984211111222221 235788999988753 34799999876
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 80 ~ 80 (153)
T 1id1_A 80 D 80 (153)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00014 Score=59.08 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=73.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhh---hhhcC-CCceEEE-eccCCCcccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNL---RKWIG-HPRFELI-RHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~---~~~~~-~~~~~~~-~~d~~~~~~~~~D~vi~~ 104 (228)
..++|.|+|+ |.+|..++..|+..+- .+|+++++...+..... ..... .....+. ..|. ..+.++|+||-+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~--~~~~daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY--SVSAGSKLVVIT 96 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS--CSCSSCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH--HHhCCCCEEEEe
Confidence 3689999998 9999999999998882 38999998432211111 11101 0111222 2333 237799999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
||... .........+..|....+.+.+.+.+... .++.+|-
T Consensus 97 aG~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 97 AGARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CSCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 98543 22334456778899999999999988754 5666664
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=60.22 Aligned_cols=68 Identities=13% Similarity=0.290 Sum_probs=52.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a~ 106 (228)
|+|+|+|+ |.+|+.+++.|.+.| +.|+++++ ..+....+.....+.++.+|.++.. ..++|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~----~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRK-YGVVIINK----DRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTT-CCEEEEES----CHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEEC----CHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 68999996 999999999999999 99999998 4444443322235778999988753 347899997663
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=7.9e-05 Score=55.86 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=32.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++|+
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~ 72 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGS 72 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00017 Score=58.13 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=72.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+|| |.+|.+++-.|+..+. .+|+++++...+......++.+. ..+.+... ...++.++|+||..++.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~--~~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG--SYGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEEC--CGGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEEC--CHHHhCCCCEEEECCCC
Confidence 68999998 9999999999887752 68999998432221111122111 13333332 24567799999999975
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ...........|....+.+++.+.+... .+|.+|-
T Consensus 78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 78 AQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 321 1223345678899999999999988764 5666643
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.76 E-value=5.4e-05 Score=62.34 Aligned_cols=96 Identities=14% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCc-eEEEeccCCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPR-FELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~-~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+++|.|.||+|++|+.+++.|.+....+++++.+..... ...... +.... .++...+ +....++|+||.|.+.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCCT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCCc
Confidence 469999999999999999999987645888886633221 111111 11000 1111111 2233479999998863
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
... ...+..+ +.|+++|-.|+..
T Consensus 93 ~~s------------------~~~a~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 93 GTT------------------QEIIKEL-PTALKIVDLSADF 115 (359)
T ss_dssp TTH------------------HHHHHTS-CTTCEEEECSSTT
T ss_pred hhH------------------HHHHHHH-hCCCEEEECCccc
Confidence 321 3444555 6677888888864
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00039 Score=56.07 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=69.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCCCCCchhhhhhcCC-----CceEEEe-ccCCCcccCCccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~d~~~~~~~~~D~vi~~ 104 (228)
|+|.|+|+ |.+|..++..|... + ++|++++++..........+... ....+.. .|. ....++|+||-+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g-~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~--~~l~~aDvViia 76 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLA-RELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY--ADTANSDIVIIT 76 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCC-SEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG--GGGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCC-CEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH--HHHCCCCEEEEe
Confidence 68999998 99999999999885 6 89999999543222111111110 1112222 232 236789999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
++... .........+..|......+++.+.+... .+|.+|.
T Consensus 77 v~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 86321 11222345667889999999998887754 5565543
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=58.79 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
+++|.|.||||++|+.|++.|.+.+ ..++..+...+..... . .+ . ..++...+.....+.++|+||.|.+.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~-~-~~-~--~~~~~~~~~~~~~~~~~Dvvf~a~~~-- 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS-L-KF-K--DQDITIEETTETAFEGVDIALFSAGS-- 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCE-E-EE-T--TEEEEEEECCTTTTTTCSEEEECSCH--
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCc-c-ee-c--CCCceEeeCCHHHhcCCCEEEECCCh--
Confidence 4699999999999999999888874 1244444332111110 0 01 1 12332223333345689999998852
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
......+..+.+.|+++|=.|+..-.
T Consensus 75 ----------------~~s~~~a~~~~~~G~~vIDlSa~~R~ 100 (366)
T 3pwk_A 75 ----------------STSAKYAPYAVKAGVVVVDNTSYFRQ 100 (366)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred ----------------HhHHHHHHHHHHCCCEEEEcCCcccc
Confidence 11234555566778899999987533
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00038 Score=56.84 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=59.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCC-CCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++|.|.||||++|..|++.|.+.. ..++..+...+. +..-. + . ..++...+.....+.++|+||.|.+.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~---~-~--~~~~~~~~~~~~~~~~~Dvvf~a~~~- 73 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA---F-R--GQEIEVEDAETADPSGLDIALFSAGS- 73 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE---E-T--TEEEEEEETTTSCCTTCSEEEECSCH-
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee---e-c--CCceEEEeCCHHHhccCCEEEECCCh-
Confidence 4789999999999999999888763 135565543211 11111 1 1 12333333334445689999998852
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
......+..+.+.|+++|=.|+..-
T Consensus 74 -----------------~~s~~~a~~~~~~G~~vID~Sa~~R 98 (344)
T 3tz6_A 74 -----------------AMSKVQAPRFAAAGVTVIDNSSAWR 98 (344)
T ss_dssp -----------------HHHHHHHHHHHHTTCEEEECSSTTT
T ss_pred -----------------HHHHHHHHHHHhCCCEEEECCCccc
Confidence 1123455556677889898998753
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=58.35 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=64.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|||.|+|| |.+|..++..|...| + +|++++++..+.......+... ....+...| .....++|+||.+++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g-~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~ 76 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRG-SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAG 76 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence 68999998 999999999999988 7 9999999432111111111111 122222222 235668999999987
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
..... .......+..|....+.+++.+.+... .+|.+|
T Consensus 77 ~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 77 ANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 43211 122334567889999999998887644 455544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00026 Score=57.32 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=71.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhh---hhcC--CCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLR---KWIG--HPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~---~~~~--~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|||.|+|| |.+|.+++..|+..+. .+|.+++++..+...... .... ...+.+.. | ....+.++|+||.++
T Consensus 6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~-~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G-EYSDCHDADLVVICA 82 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C-CGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C-CHHHhCCCCEEEECC
Confidence 579999998 9999999999988762 489999884321111111 1111 02233333 2 244567999999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
|.... ........+..|....+.+.+.+.+... .+|.+|
T Consensus 83 g~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 83 GAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 75322 1233345678899999999999988764 455544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.3e-05 Score=60.51 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-CCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~D~vi~~a~~~~ 109 (228)
.+++++|+|+ |.+|++++..|.+.| .+|++.+|+..+..+....+.....++. .|..+ .. .++|+||++++...
T Consensus 118 ~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~~~~~la~~~~~~~~~~~--~~~~~-~~~~~~DivVn~t~~~~ 192 (271)
T 1nyt_A 118 PGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTGSIQA--LSMDE-LEGHEFDLIINATSSGI 192 (271)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHTGGGSSEEE--CCSGG-GTTCCCSEEEECCSCGG
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHhhccCCeeE--ecHHH-hccCCCCEEEECCCCCC
Confidence 4789999998 789999999999999 9999999843221111111111112222 22211 11 47999999997543
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=60.17 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=59.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEc--CCCCCCc-hhhhhhcCC-------CceEEEeccCCCc-ccCCcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSK-DNLRKWIGH-------PRFELIRHDVTEP-LLIEVD 99 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~--r~~~~~~-~~~~~~~~~-------~~~~~~~~d~~~~-~~~~~D 99 (228)
.+++|.|.||||++|..+++.|.+....++..+. ++..+.. .....++.. ....+... ... .+.++|
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~--~~~~~~~~~D 95 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQEC--KPEGNFLECD 95 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEES--SSCTTGGGCS
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeC--chhhhcccCC
Confidence 3579999999999999999988776545775552 3212211 111011000 01222222 222 346899
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
+||.|.+. .....+...+.+.|+++|=.|+..-+
T Consensus 96 vvf~alp~------------------~~s~~~~~~~~~~G~~VIDlSa~fR~ 129 (381)
T 3hsk_A 96 VVFSGLDA------------------DVAGDIEKSFVEAGLAVVSNAKNYRR 129 (381)
T ss_dssp EEEECCCH------------------HHHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred EEEECCCh------------------hHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 99998752 11234555666778899999988544
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.8e-05 Score=58.64 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=29.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~ 66 (228)
++|+||.|+|++|.+|+.+++.+.+....+++++ +|.
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 3478999999999999999999988754777775 553
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00027 Score=57.55 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=66.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhh------c-CCCceEEEeccCCCcccCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKW------I-GHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~------~-~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
.|||.|+|| |.+|..++..|...| + +|++++++..........+ . ...++... .|. .....++|+||.
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g-~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~-~ea~~~aDiVi~ 84 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRE-LADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-YSY-EAALTGADCVIV 84 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-CSH-HHHHTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe-CCH-HHHhCCCCEEEE
Confidence 579999998 999999999999998 7 8999998543222111111 0 11122221 222 124568999999
Q ss_pred ccCCCCcccccC-----CchhhHHhhHHHHHHHHHHHHHcCC
Q 027129 104 LACPASPIFYKY-----NPVKTIKTNVIGTLNMLGLAKRVGA 140 (228)
Q Consensus 104 ~a~~~~~~~~~~-----~~~~~~~~n~~~~~~l~~~~~~~~~ 140 (228)
++|..... .. ........|....+.+++.+.+...
T Consensus 85 a~g~p~~~--g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p 124 (331)
T 1pzg_A 85 TAGLTKVP--GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124 (331)
T ss_dssp CCSCSSCT--TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCCCCCC--CcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99753221 11 2345567888999999999888754
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00047 Score=56.85 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=73.1
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCC-C---eEEEEcCCCCCCchhh----hhhcCCC--ce-EEEeccCCCcccC
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEK-N---EVIVVDNYFTGSKDNL----RKWIGHP--RF-ELIRHDVTEPLLI 96 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~---~V~~~~r~~~~~~~~~----~~~~~~~--~~-~~~~~d~~~~~~~ 96 (228)
.+...+||.|+||+|+||.+++-.|+..+- . .+.+.+.......+.+ .++.+.. -. ...-.+-....+.
T Consensus 28 ~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~ 107 (375)
T 7mdh_A 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE 107 (375)
T ss_dssp -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred hCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhC
Confidence 344567999999999999999999988752 1 2555443222221111 2222111 11 1111222234567
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC--eEEEEcc
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST 147 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--r~i~~Ss 147 (228)
++|+||-.||.. ..........++.|....+.+.+.+.+. +. .++.+|.
T Consensus 108 daDvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 108 DVDWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp TCSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 899999998853 2223455677899999999999999875 43 6777775
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00067 Score=50.07 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=50.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi~ 103 (228)
+++|+|+| .|.+|..+++.|.+. | +.|++++++ .+....+.. ..+..+.+|.++. ...++|+||.
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~----~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIR----EEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESC----HHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECC----HHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 67899998 599999999999999 9 999999983 343333322 2466677777653 1347899998
Q ss_pred ccC
Q 027129 104 LAC 106 (228)
Q Consensus 104 ~a~ 106 (228)
+.+
T Consensus 112 ~~~ 114 (183)
T 3c85_A 112 AMP 114 (183)
T ss_dssp CCS
T ss_pred eCC
Confidence 764
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=58.82 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=54.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 110 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~ 110 (228)
|+|.|.||+|++|+.+++.|.+++ ...++.+....... ..+. .....+++...|.. .. ++|+||.|.|..
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g-~~l~--~~g~~i~v~~~~~~--~~-~~DvV~~a~g~~-- 72 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAG-VRLA--FRGEEIPVEPLPEG--PL-PVDLVLASAGGG-- 72 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSS-CEEE--ETTEEEEEEECCSS--CC-CCSEEEECSHHH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCC-CEEE--EcCceEEEEeCChh--hc-CCCEEEECCCcc--
Confidence 579999999999999999998655 12333332110000 0000 11123444444432 24 899999988621
Q ss_pred ccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
.....+....+.|+++|-.|+..
T Consensus 73 ----------------~s~~~a~~~~~~G~~vId~s~~~ 95 (331)
T 2yv3_A 73 ----------------ISRAKALVWAEGGALVVDNSSAW 95 (331)
T ss_dssp ----------------HHHHHHHHHHHTTCEEEECSSSS
T ss_pred ----------------chHHHHHHHHHCCCEEEECCCcc
Confidence 12344455566788989899874
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00043 Score=55.99 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhc---CC--CceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI---GH--PRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~---~~--~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
++||.|+|+ |.+|..++..|+..+ ..+|++++++.........++. .. ..+.+...+ ...+.++|+||.++
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--~~al~~aDvViia~ 82 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD--YDDCRDADLVVICA 82 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC--GGGTTTCSEEEECC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCc--HHHhCCCCEEEEcC
Confidence 579999998 999999999998876 2589999995321111111111 11 123333322 24567899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
+..... .......+..|....+.+++.+.+... .++.+|
T Consensus 83 ~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 83 GANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp SCCCCT--TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCCC--CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 764322 123345567888888999998888654 444444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=51.74 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=52.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
.++++|+|. |.+|+.+++.|.+.| +.|+++++ ..+....+.. ..+..+.+|.++... .+.|+||.+.
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g-~~v~vid~----~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASD-IPLVVIET----SRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEES----CHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCC-CCEEEEEC----CHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence 468999996 999999999999999 99999999 4444443332 467888999887632 3689988776
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 80 ~ 80 (140)
T 3fwz_A 80 P 80 (140)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2e-05 Score=59.79 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|+|+||+|.+|+.+++.|.+.| ++|++++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 689999999999999999999999 999999984
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=58.91 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC------C----CceEEEeccCCCcccCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------H----PRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~----~~~~~~~~d~~~~~~~~~D~v 101 (228)
+++|.|.||||++|+.|++.|.+....++..+...+.... ....... . ....+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk-~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGK-PYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTS-BHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCC-ChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 5699999999999999999877665457776654222111 1111100 0 012222222 2234589999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
|.|.+.... ..+...+.+.|+++|-+|+..-.
T Consensus 84 f~a~p~~~s------------------~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpl_A 84 FSPLPQGAA------------------GPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EECCCTTTH------------------HHHHHHHHHTTCEEEECSSTTTT
T ss_pred EECCChHHH------------------HHHHHHHHHCCCEEEEcCCCccC
Confidence 998763221 24445556778899999998543
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=58.91 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC------C----CceEEEeccCCCcccCCccEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------H----PRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~----~~~~~~~~d~~~~~~~~~D~v 101 (228)
+++|.|.||||++|+.|++.|.+....++..+...+.... ....... . ....+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk-~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGK-PYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTS-BHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCC-ChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 5699999999999999999877665457776654222111 1111100 0 012222222 2234589999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
|.|.+.... ..+...+.+.|+++|-+|+..-.
T Consensus 84 f~a~p~~~s------------------~~~a~~~~~~G~~vIDlSa~~R~ 115 (359)
T 4dpk_A 84 FSPLPQGAA------------------GPVEEQFAKEGFPVISNSPDHRF 115 (359)
T ss_dssp EECCCTTTH------------------HHHHHHHHHTTCEEEECSSTTTT
T ss_pred EECCChHHH------------------HHHHHHHHHCCCEEEEcCCCccC
Confidence 998763221 24445556778899999998543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=55.27 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---------------hh-------hhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------------DN-------LRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---------------~~-------~~~~~~~~~~~~~~~d 89 (228)
.++|+|+|+ |.+|.++++.|.+.|..+|+++++..-... .+ +........++.+..+
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 589999995 899999999999999558999988541110 01 1111122345555555
Q ss_pred CCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 90 ~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
+++. .+.++|+||.+.. |...-..+.+++++.++.+|..+..+
T Consensus 110 ~~~~~~~~~~~~~DvVi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g 156 (249)
T 1jw9_B 110 LDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKVPLVSGAAIR 156 (249)
T ss_dssp CCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred CCHhHHHHHHhCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEeeecc
Confidence 5432 2347999998763 11122456667777777677665443
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00088 Score=54.21 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=67.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhh---cC-CCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKW---IG-HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~---~~-~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|+|.|+|+ |.+|..++..|+..| + +|++++++..........+ .. .....+...| .....++|+||.+++
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g-~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~ 76 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAG 76 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccC
Confidence 68999998 999999999999998 7 9999998432111111110 00 0112222223 234568999999886
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
.... ...........|....+.+++.+.+... .+|.+|
T Consensus 77 ~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 77 VPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp CCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 4321 1122335567788888888888877543 455544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0009 Score=54.05 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=68.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhh------c-CCCceEEEeccCCCcccCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKW------I-GHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~------~-~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
+|+|.|+|+ |.+|..++..|...| + +|++++++..........+ . ...++... .|. ....++|+||.
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g-~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~--~a~~~aDiVi~ 78 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDN-LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY--ADISGSDVVII 78 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH--HHhCCCCEEEE
Confidence 579999997 999999999999999 7 8999999543222111010 0 01222221 232 34568999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+++..... ..........|....+.+++.+.+... .+|.+|.
T Consensus 79 avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 79 TASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred eCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99753321 222334456677778888888777643 4555554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=52.68 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCch---hhhhhc----CCCceEEEeccCCCcccCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKD---NLRKWI----GHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~---~~~~~~----~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
+|+|.|+|| |.+|..++..|...| + .|++++++...... .+.... ...++... .|. ..+.++|+||-
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g-~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~VI~ 88 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKD-LGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY--EYLQNSDVVII 88 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH--HHHCCCCEEEE
Confidence 369999998 999999999999998 7 89999995432221 111111 11223322 333 45678999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
+++.... ...........|....+.+++.+.+... .+|.+|-
T Consensus 89 avg~p~k--~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 89 TAGVPRK--PNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp CCSCCCC--TTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCCCCC--CCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9874321 1122234557788888888888877643 4555543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00018 Score=56.93 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.+++++|+|+ |.+|++++..|.+.| .+|++.+|+..+..+..........+... |..+....++|+||++++...
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~R~~~~a~~l~~~~~~~~~~~~~--~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAV--SMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEE--EGGGCCCSCCSEEEECCCC--
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHccccCCeEEe--eHHHhccCCCCEEEECCCCCC
Confidence 4789999997 789999999999999 99999999432222221111111123322 221110037999999987543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.37 E-value=5.6e-05 Score=53.79 Aligned_cols=71 Identities=18% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++++|+|+ |.+|+.+++.|...| .+|++.+|+ .+..+.+......+....+-......++|+||.+.+..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g-~~v~v~~r~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQ-YKVTVAGRN----IDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTT-CEEEEEESC----HHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEcCC----HHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC
Confidence 789999995 999999999999988 779999884 33322221111233322222122334799999988643
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00078 Score=53.52 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=28.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
++.+++|.|+|++|.+|+.+++.+.+....++++...
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd 54 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLV 54 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBC
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3445799999999999999999998765467776644
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0016 Score=52.40 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=71.1
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCCCCchhhhhhcC-----CCceEEEe-ccCCCcccCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~d~~~~~~~~~D~vi~~a~ 106 (228)
||.|+|| |.+|..++..|+..+ . +|+++++...+......++.. .....+.. .|. ..+.++|+||..++
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~-l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRG-YDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAG 76 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHT-CSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCS
T ss_pred CEEEECc-CHHHHHHHHHHHhCC-CCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCC
Confidence 5889998 999999999998877 5 699999954322211111111 11222332 342 46779999999987
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.... ...........|....+.+++.+.+... .+|.+|-
T Consensus 77 ~~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 77 IGRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp CCCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5332 2233445678899999999999888654 6666654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00048 Score=55.90 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++++|+||+|.||..+++.+...| .+|++++++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~ 179 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGS 179 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=52.90 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCch-hh--hhhcC-CCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKD-NL--RKWIG-HPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~-~~--~~~~~-~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|+|.|+|+ |.+|..++..|...| + +|++++|+...... .. ..... .....+...+ ......++|+||-++
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g-~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~aD~Vii~v 83 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRG-IAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD-DPEICRDADMVVITA 83 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES-CGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCC-CHHHhCCCCEEEECC
Confidence 589999997 999999999999998 7 99999994321110 01 11010 0122222211 123456899999988
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 140 (228)
+.... ...........|......+++.+.+.+.
T Consensus 84 ~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~ 116 (319)
T 1lld_A 84 GPRQK--PGQSRLELVGATVNILKAIMPNLVKVAP 116 (319)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 64321 1233345567788888888888776543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0018 Score=52.11 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=66.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
||+|.|+| .|.+|..++..|...|. ++|++++|+..........+. ....+.....|. ....++|+||.++
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav 77 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTL 77 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEec
Confidence 57999999 69999999999998873 689999994322111111110 011233323343 3456899999988
Q ss_pred CCCCccc--ccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 106 CPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
+...... ...........|......+++.+.+... .+|.+|
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6422100 1112234566788888888888877543 444433
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=52.27 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.++||.|+|| |.+|..++..|+..+ . +|+++++... ......++ ....++... .|. ..+.++|+||.++|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g-~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag 86 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKG-IADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVN 86 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCC
Confidence 3689999996 999999999999988 6 9999999653 22111111 122244442 343 45679999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.. . ...........|....+.+++.+.+... .++.+|-
T Consensus 87 ~~--~-pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 87 SL--G-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp C-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CC--C-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 63 1 1233345567788888888888877543 4555554
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00049 Score=54.41 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=47.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+++++|+|+ |.+|++++..|.+.|..+|++..|...+..+....+.. ..+.....+ +....++|+||++...
T Consensus 119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~~~~~~~~~--~l~~~~~DivInaTp~ 191 (272)
T 3pwz_A 119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-SRLRISRYE--ALEGQSFDIVVNATSA 191 (272)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-TTEEEECSG--GGTTCCCSEEEECSSG
T ss_pred cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-CCeeEeeHH--HhcccCCCEEEECCCC
Confidence 4789999997 88999999999999945999999943222222222211 224444322 2111579999998754
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=50.30 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=50.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
.++++|+|+ |.+|+.+++.|.+.| + |+++++ ..+....+. ..+.++.+|.++.. ..++|.||.+.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~----~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE-V-FVLAED----ENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESC----GGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEEC----CHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 578999997 999999999999999 8 999988 333343333 35788999998753 34789999876
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 80 ~ 80 (234)
T 2aef_A 80 E 80 (234)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00028 Score=57.20 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=32.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~ 174 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGT 174 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0008 Score=54.64 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=33.2
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
...+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 183 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKG-CRVVGIAGG 183 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 3457899999999999999999999999 899999883
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0003 Score=57.16 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=32.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~Vi~~~~~ 179 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLG-ATVIGTVST 179 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999984
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=59.90 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=33.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++|+.
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~V~~~~~~~ 204 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMG-YRVLGIDGGE 204 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECST
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CcEEEEcCCH
Confidence 457899999999999999999999999 8999999843
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00029 Score=60.97 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~~ 108 (228)
.+++++|+|| |.+|++++..|.+.| .+|+++.|.. +....+......+.... |+.+.....+|++||+++.+
T Consensus 363 ~~k~vlV~Ga-GGig~aia~~L~~~G-~~V~i~~R~~----~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg 435 (523)
T 2o7s_A 363 ASKTVVVIGA-GGAGKALAYGAKEKG-AKVVIANRTY----ERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMG 435 (523)
T ss_dssp ---CEEEECC-SHHHHHHHHHHHHHC-C-CEEEESSH----HHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTT
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCC
Confidence 3689999998 799999999999999 7999999842 22222211001111111 22111123489999999874
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00053 Score=54.48 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=47.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.+++++|+|+ |.+|++++..|.+.|..+|++..|...+..+....+.....+.....+ +.. .++|+||++...+
T Consensus 125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~--~l~-~~aDiIInaTp~g 198 (281)
T 3o8q_A 125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE--QLK-QSYDVIINSTSAS 198 (281)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCC-SCEEEEEECSCCC
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH--Hhc-CCCCEEEEcCcCC
Confidence 4789999997 789999999999999449999999433222222222111123443322 211 5799999987543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00048 Score=56.48 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=32.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~G-a~Vi~~~~~ 204 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGT 204 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0029 Score=51.78 Aligned_cols=103 Identities=10% Similarity=0.173 Sum_probs=66.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------hhhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|.++++.|...|..++++++...-... +.+.++.....++....+
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 689999995 899999999999999779999865321111 111222223345666555
Q ss_pred CCC---cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~---~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
+.+ ..+.++|+||.+.. |...-..+-++|++.++.+|..++.+.+|
T Consensus 115 ~~~~~~~~~~~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~G~~G 163 (346)
T 1y8q_A 115 IEKKPESFFTQFDAVCLTCC-----------------SRDVIVKVDQICHKNSIKFFTGDVFGYHG 163 (346)
T ss_dssp GGGCCHHHHTTCSEEEEESC-----------------CHHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred cCcchHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence 532 22357999998652 22233467778888888888877666554
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0035 Score=51.42 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=66.1
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~ 83 (228)
++.+. ..+|+|.|+ |.+|.++++.|...|..+++++++..-.... .+..+.+...+
T Consensus 113 q~~L~-~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v 190 (353)
T 3h5n_A 113 QDKLK-NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISV 190 (353)
T ss_dssp HHHHH-TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEE
T ss_pred HHHHh-CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeE
Confidence 34444 689999996 8899999999999997799999874322111 11122223456
Q ss_pred EEEeccCCCcc----cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 84 ELIRHDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 84 ~~~~~d~~~~~----~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
+.+..+++... +.++|+||.+.. +... .-..+-++|.+.++.+|+.+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~DlVvd~~D---------n~~~-------~r~~ln~~c~~~~~p~i~~~~ 242 (353)
T 3h5n_A 191 SEIALNINDYTDLHKVPEADIWVVSAD---------HPFN-------LINWVNKYCVRANQPYINAGY 242 (353)
T ss_dssp EEEECCCCSGGGGGGSCCCSEEEECCC---------CSTT-------HHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeecccCchhhhhHhccCCEEEEecC---------ChHH-------HHHHHHHHHHHhCCCEEEEEE
Confidence 66665554433 568999998762 1110 112455678888887776543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0008 Score=53.45 Aligned_cols=65 Identities=14% Similarity=0.275 Sum_probs=44.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
||+|.|+|+||.+|..+++.|.+.| ++|++.+|+ .+....+... .+.. .+ ......++|+||.+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~----~~~~~~~~~~-g~~~--~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA-HHLAAIEIA----PEGRDRLQGM-GIPL--TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCS----HHHHHHHHHT-TCCC--CC-SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECC----HHHHHHHHhc-CCCc--CC-HHHHhcCCCEEEEcC
Confidence 4799999988999999999999999 999999883 3332222211 1221 12 122345799999876
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=57.50 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=47.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCC-----cccCCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTE-----PLLIEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~-----~~~~~~D~ 100 (228)
..+++++|+|+ |.+|++++..|.+.|..+|+++.|... ..++.+++. ....+.+...++.+ ....++|+
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~-~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDD-FYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSST-THHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCc-hHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 34789999997 899999999999999448999999521 122222211 11112222222322 12347999
Q ss_pred EEEccCCC
Q 027129 101 IYHLACPA 108 (228)
Q Consensus 101 vi~~a~~~ 108 (228)
||++...+
T Consensus 230 IINaTp~G 237 (315)
T 3tnl_A 230 FTNATGVG 237 (315)
T ss_dssp EEECSSTT
T ss_pred EEECccCC
Confidence 99987543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=50.83 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=55.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.++++|+|+|| |-+|...++.|++.| ..|++++.. ....+..+.....+.++..+.....+.++|.||-+.
T Consensus 29 L~gk~VLVVGg-G~va~~ka~~Ll~~G-A~VtVvap~---~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT 99 (223)
T 3dfz_A 29 LKGRSVLVVGG-GTIATRRIKGFLQEG-AAITVVAPT---VSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT 99 (223)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHGGGC-CCEEEECSS---CCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCC---CCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC
Confidence 44799999996 999999999999999 899998873 223344444456788888888777788999998654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00058 Score=54.37 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=47.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC---C---ceEEEeccCCCcccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH---P---RFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~---~---~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
.+++++|+|++ .+|+++++.|.+.| +|++.+|+..+..+....+... . .++.. |+ .....++|++|++
T Consensus 127 ~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~--~~-~~~~~~~DilVn~ 200 (287)
T 1nvt_A 127 KDKNIVIYGAG-GAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS--GL-DVDLDGVDIIINA 200 (287)
T ss_dssp CSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE--CT-TCCCTTCCEEEEC
T ss_pred CCCEEEEECch-HHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe--eH-HHhhCCCCEEEEC
Confidence 47899999985 99999999999999 9999988432211111111100 0 12222 22 2344589999999
Q ss_pred cCCCC
Q 027129 105 ACPAS 109 (228)
Q Consensus 105 a~~~~ 109 (228)
++...
T Consensus 201 ag~~~ 205 (287)
T 1nvt_A 201 TPIGM 205 (287)
T ss_dssp SCTTC
T ss_pred CCCCC
Confidence 98654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0005 Score=52.33 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.+|+|.|+| +|.+|+.+++.|.+.| ++|++.+|+ .+....+... .+... +.. ....++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g-~~V~~~~r~----~~~~~~~~~~-g~~~~--~~~-~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSG-FKVVVGSRN----PKRTARLFPS-AAQVT--FQE-EAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESS----HHHHHHHSBT-TSEEE--EHH-HHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCC-CEEEEEeCC----HHHHHHHHHc-CCcee--cHH-HHHhCCCEEEECCC
Confidence 468999999 7999999999999999 999999883 3333333221 33332 211 22357999998763
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=50.36 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=28.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r 65 (228)
|+|.|+|++|.+|+.+++.+.+. + +++++...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~-~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD-LTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT-CEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEEEc
Confidence 58999999999999999999876 6 88887765
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=7.7e-05 Score=61.28 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=32.6
Q ss_pred cCC--CEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCC
Q 027129 30 QSN--MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY 66 (228)
Q Consensus 30 ~~~--~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~ 66 (228)
..+ ++|+|+||+|.||..+++.+...| . +|++++++
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~G-a~~Vi~~~~~ 195 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLG-CSRVVGICGT 195 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCC-CCeEEEEeCC
Confidence 457 999999999999999999999999 7 99999883
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00054 Score=56.18 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=32.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G-a~Vi~~~~~ 196 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAG-AIPLVTAGS 196 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999999999 899999984
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0003 Score=59.92 Aligned_cols=68 Identities=22% Similarity=0.502 Sum_probs=53.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
.|+|+|.|+ |-+|+.+++.|..+| +.|+++++ ..+.++.+.....+..+.+|-++... .++|++|-+.
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~-~~v~vId~----d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGEN-NDITIVDK----DGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTT-EEEEEEES----CHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEC----CHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 589999996 999999999999999 99999998 45555544433467889999998743 3789888544
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0012 Score=53.74 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=32.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G-~~V~~~~~~ 189 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMG-CYVVGSAGS 189 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=56.16 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=46.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.+++++|+|+ |.+|++++..|.+.|..+|++.+|...+..+ +.+......-.....+-......++|+||++.+...
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~-la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAER-LVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHH-HHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 4789999997 7899999999999993399999994222111 111111100012211111123357999999987543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=51.47 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=46.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+++++|+|+ |..|++++..|.+.| .+|++..|...+..+.. .+ .+..... .+. .+.|+||++...+
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~----~~~~~~~--~~l--~~~DiVInaTp~G 183 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RL----GCDCFME--PPK--SAFDLIINATSAS 183 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HH----TCEEESS--CCS--SCCSEEEECCTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HC----CCeEecH--HHh--ccCCEEEEcccCC
Confidence 789999996 999999999999999 99999999544333222 21 1333322 121 2899999987543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=53.69 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=31.6
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEE-EcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r~ 66 (228)
++.||+|.|+| +|.+|.++++.|.+.| ++|++ .+|+
T Consensus 20 ~m~mmkI~IIG-~G~mG~~la~~l~~~g-~~V~~v~~r~ 56 (220)
T 4huj_A 20 FQSMTTYAIIG-AGAIGSALAERFTAAQ-IPAIIANSRG 56 (220)
T ss_dssp GGGSCCEEEEE-CHHHHHHHHHHHHHTT-CCEEEECTTC
T ss_pred hhcCCEEEEEC-CCHHHHHHHHHHHhCC-CEEEEEECCC
Confidence 35578999999 6999999999999999 99998 7774
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=57.46 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=48.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~D~v 101 (228)
+.+.+|+|+||+|.+|..+++.+...| .+|++++++..+ .+..+++... ..+..+..+. ...++|+|
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~-~~~~~~lga~---~~~~~~~~~~~~~~~~~~~~~g~Dvv 217 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKH-TEELLRLGAA---YVIDTSTAPLYETVMELTNGIGADAA 217 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTT-HHHHHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHH-HHHHHhCCCc---EEEeCCcccHHHHHHHHhCCCCCcEE
Confidence 457899999999999999999999899 899999985432 3333333211 1222111111 01269999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
|+++|
T Consensus 218 id~~g 222 (340)
T 3gms_A 218 IDSIG 222 (340)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99997
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00096 Score=54.15 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=32.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+|+|+||+|.+|...++.+...| .+|++++++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 182 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKG-AHTIAVAST 182 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=48.48 Aligned_cols=106 Identities=10% Similarity=0.124 Sum_probs=63.6
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---------------hh-------hhhhcCCCce
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------------DN-------LRKWIGHPRF 83 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---------------~~-------~~~~~~~~~~ 83 (228)
++.+. .++|+|.|+ |.+|.++++.|...|..+++++++..-... .+ +..+.....+
T Consensus 23 q~~l~-~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v 100 (251)
T 1zud_1 23 QQKLL-DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQL 100 (251)
T ss_dssp HHHHH-TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEE
T ss_pred HHHHh-cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEE
Confidence 33444 689999996 779999999999999678888876431110 00 1111122344
Q ss_pred EEEeccCCCc----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 84 ELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 84 ~~~~~d~~~~----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
+.+..+++.. .+.++|+||.+.. |...-..+.++|.+.++.+|..+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~~p~i~~~~~g~ 154 (251)
T 1zud_1 101 TALQQRLTGEALKDAVARADVVLDCTD-----------------NMATRQEINAACVALNTPLITASAVGF 154 (251)
T ss_dssp EEECSCCCHHHHHHHHHHCSEEEECCS-----------------SHHHHHHHHHHHHHTTCCEEEEEEEBT
T ss_pred EEEeccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 5554444332 2236899998752 111223566677777777777665443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00028 Score=56.18 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=47.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCcccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
..+++++|+|+ |.+|++++..|.+.|..+|++++|...+..+....+. ....+.....+-......+.|+||++..
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence 34789999997 8999999999999994489999994332222111111 1112333221111122346899999875
Q ss_pred C
Q 027129 107 P 107 (228)
Q Consensus 107 ~ 107 (228)
.
T Consensus 204 ~ 204 (283)
T 3jyo_A 204 M 204 (283)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00092 Score=54.53 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=47.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------c-cCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------L-LIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~-~~~~D~v 101 (228)
..+.+|+|+||+|.+|..+++.+...| .+|++++++..+ .+..+++.. -..+..+ .+. . ..++|+|
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~G-a~Vi~~~~~~~~-~~~~~~~ga---~~v~~~~-~~~~~~v~~~~~~~g~Dvv 231 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMG-AKVIAVVNRTAA-TEFVKSVGA---DIVLPLE-EGWAKAVREATGGAGVDMV 231 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSGGG-HHHHHHHTC---SEEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHH-HHHHHhcCC---cEEecCc-hhHHHHHHHHhCCCCceEE
Confidence 457899999999999999999999999 899999884332 223333211 1222222 111 0 1269999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
|+++|
T Consensus 232 id~~g 236 (342)
T 4eye_A 232 VDPIG 236 (342)
T ss_dssp EESCC
T ss_pred EECCc
Confidence 99997
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00016 Score=59.73 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccC--CCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV--TEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~D~vi~~a~~ 107 (228)
+++|+|+|+ |.+|+.+++.|...| .+|++++|+..+. +...+... ..+.....+. ......++|+||++++.
T Consensus 166 ~~~V~ViGa-G~iG~~~a~~l~~~G-a~V~~~d~~~~~~-~~~~~~~g-~~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 166 PASVVILGG-GTVGTNAAKIALGMG-AQVTILDVNHKRL-QYLDDVFG-GRVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHTT-TSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECCHHHH-HHHHHhcC-ceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 689999998 999999999999999 8999999842211 11111111 1121111111 01122379999999874
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00064 Score=56.06 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-C--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-ccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-E--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~D~vi~~a~~ 107 (228)
|++|.|.||+|++|+.+++.|+.+ + ...++.+.....+.. .... ....+.+... .+. ...++|+||.|.+.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~--v~~~-~g~~i~~~~~--~~~~~~~~~DvVf~a~g~ 75 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQA--APSF-GGTTGTLQDA--FDLEALKALDIIVTCQGG 75 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB--CCGG-GTCCCBCEET--TCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCC--cccc-CCCceEEEec--CChHHhcCCCEEEECCCc
Confidence 579999999999999999955554 3 135666655322111 1101 1112222222 221 13479999998862
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCe--EEEEccc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTS 148 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r--~i~~Ss~ 148 (228)
.........+.+.|++ +|=.|+.
T Consensus 76 ------------------~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 76 ------------------DYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp ------------------HHHHHHHHHHHHTTCCCEEEECSST
T ss_pred ------------------hhHHHHHHHHHHCCCCEEEEcCChh
Confidence 2224555666677873 4444444
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.001 Score=53.84 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=32.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~ 174 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALG-AKLIGTVSS 174 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00091 Score=54.79 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=32.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+.+|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~G-a~Vi~~~~~ 201 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFG-AEVYATAGS 201 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 457899999999999999999999999 899999983
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=53.70 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=32.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G-~~Vi~~~~~ 200 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFG-ARVIATAGS 200 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCC
Confidence 457899999999999999999999999 899999883
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00043 Score=55.39 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=47.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc----CCCcccCCccEEEEc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD----VTEPLLIEVDQIYHL 104 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~D~vi~~ 104 (228)
.+.+.+|+|+||+|.+|..+++.+...| .+|++++++..+. +..+++.. . ..+..+ +.+ ...++|+||+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G-a~Vi~~~~~~~~~-~~~~~~ga--~-~~~~~~~~~~~~~-~~~~~d~vid- 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKL-ALPLALGA--E-EAATYAEVPERAK-AWGGLDLVLE- 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGS-HHHHHTTC--S-EEEEGGGHHHHHH-HTTSEEEEEE-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHH-HHHHhcCC--C-EEEECCcchhHHH-HhcCceEEEE-
Confidence 4557899999999999999999999999 7999999843322 22222211 1 122211 111 1157999999
Q ss_pred cC
Q 027129 105 AC 106 (228)
Q Consensus 105 a~ 106 (228)
+|
T Consensus 196 ~g 197 (302)
T 1iz0_A 196 VR 197 (302)
T ss_dssp CS
T ss_pred CC
Confidence 86
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0043 Score=49.40 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=64.8
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---------------------hhhhhhcCCCceE
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------------------DNLRKWIGHPRFE 84 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---------------------~~~~~~~~~~~~~ 84 (228)
++.+. ..+|+|.|+ |.+|.++++.|.+.|.-++.+++...-... +.+..+.....++
T Consensus 31 q~kL~-~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~ 108 (292)
T 3h8v_A 31 YEKIR-TFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFE 108 (292)
T ss_dssp -CGGG-GCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHh-CCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEE
Confidence 33344 589999996 999999999999998778999887431110 1112222334566
Q ss_pred EEeccCCCcc----c------------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 85 LIRHDVTEPL----L------------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 85 ~~~~d~~~~~----~------------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
.+..++++.. + .++|+||.+.. |...-..+-++|.+.++.+|+.+.
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~Pli~~gv 170 (292)
T 3h8v_A 109 VHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQTWMESGV 170 (292)
T ss_dssp EECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCCCEEEeee
Confidence 6666665411 1 47899998762 222224566788888887776543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=52.10 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=46.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc---c-----cCCccEEEE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---L-----LIEVDQIYH 103 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~-----~~~~D~vi~ 103 (228)
+++++|+||+|.+|...++.+...| .+|++++++..+ .+..+++.. -..+..+..+. . -.++|+||+
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~G-a~Vi~~~~~~~~-~~~~~~~Ga---~~~~~~~~~~~~~~v~~~~~~~g~D~vid 239 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEG-FRPIVTVRRDEQ-IALLKDIGA---AHVLNEKAPDFEATLREVMKAEQPRIFLD 239 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESCGGG-HHHHHHHTC---SEEEETTSTTHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHH-HHHHHHcCC---CEEEECCcHHHHHHHHHHhcCCCCcEEEE
Confidence 3799999999999999999999999 799999884322 223333211 12222221111 0 026999999
Q ss_pred ccC
Q 027129 104 LAC 106 (228)
Q Consensus 104 ~a~ 106 (228)
++|
T Consensus 240 ~~g 242 (349)
T 3pi7_A 240 AVT 242 (349)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0017 Score=53.40 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=32.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
...+.+|+|+||+|.+|..+++.+...| .+|++++++
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~G-a~Vi~~~~~ 197 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAK-CHVIGTCSS 197 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEECC
Confidence 3457899999999999999999999999 799999883
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0062 Score=56.50 Aligned_cols=104 Identities=12% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|.++++.|...|..++++++...-.... .+.++.....++....+
T Consensus 27 ~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~~ 105 (1015)
T 3cmm_A 27 TSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSL 105 (1015)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCCC
T ss_pred cCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecCC
Confidence 689999996 8899999999999997799998764221111 11112222356666666
Q ss_pred CCCcccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
++...+.++|+||.+.. .|...-..+.++|++.++.+|..++.+.+|
T Consensus 106 l~~~~l~~~DvVv~~~d----------------~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 106 DDVTQLSQFQVVVATDT----------------VSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp CCSTTGGGCSEEEECTT----------------SCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred CCHHHHhcCCEEEEcCC----------------CCHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 65555568999997541 023334567778888888888877655444
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0018 Score=52.88 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=32.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~ 66 (228)
..+++|+|+||+|.+|..+++.+... | .+|++++++
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~G-a~Vi~~~~~ 205 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVR 205 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCC-CeEEEEcCC
Confidence 45789999999989999999999998 9 899999883
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0005 Score=55.40 Aligned_cols=77 Identities=8% Similarity=0.029 Sum_probs=47.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh----cCCCceEEEeccCCCc-----ccCCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW----IGHPRFELIRHDVTEP-----LLIEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~d~~~~-----~~~~~D~ 100 (228)
..+++++|+|+ |.+|++++..|.+.|..+|++..|.... .++.+++ ...........+..+. ...+.|+
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~-~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDF-FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTH-HHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCch-HHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence 34789999997 8999999999999994589999994211 2222221 1111122222233221 2346899
Q ss_pred EEEccCCC
Q 027129 101 IYHLACPA 108 (228)
Q Consensus 101 vi~~a~~~ 108 (228)
||++...+
T Consensus 224 IINaTp~G 231 (312)
T 3t4e_A 224 LTNGTKVG 231 (312)
T ss_dssp EEECSSTT
T ss_pred EEECCcCC
Confidence 99987554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0031 Score=52.87 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=52.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
.++|+|+|. |-+|+.+++.|.+.| +.|+++++ ..+....+.. ..+.++.+|.++.. ..++|+||.+.
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g-~~vvvId~----d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSG-VKMVVLDH----DPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEEC----CHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCC-CCEEEEEC----CHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 468999995 999999999999999 99999999 4444443322 35778999998864 34789998776
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
.
T Consensus 77 ~ 77 (413)
T 3l9w_A 77 D 77 (413)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0064 Score=47.94 Aligned_cols=73 Identities=27% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhc----------------------CCCce-EEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI----------------------GHPRF-ELI 86 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~----------------------~~~~~-~~~ 86 (228)
++|+|+|+|| |-+|...++.|++.| ++|++++....... .....+. ....+ .++
T Consensus 12 ~~k~VLVVGg-G~va~rka~~Ll~~G-a~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i 89 (274)
T 1kyq_A 12 KDKRILLIGG-GEVGLTRLYKLMPTG-CKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEYI 89 (274)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGT-CEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEEE
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCC-CEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEEE
Confidence 4799999995 999999999999999 99999987432111 1222222 22355 777
Q ss_pred eccCCCcccC------CccEEEEcc
Q 027129 87 RHDVTEPLLI------EVDQIYHLA 105 (228)
Q Consensus 87 ~~d~~~~~~~------~~D~vi~~a 105 (228)
..++....+. ++|.||-+.
T Consensus 90 ~~~~~~~dL~~l~~~~~adlViaat 114 (274)
T 1kyq_A 90 RSDFKDEYLDLENENDAWYIIMTCI 114 (274)
T ss_dssp CSSCCGGGGCCSSTTCCEEEEEECC
T ss_pred cCCCCHHHHhhcccCCCeEEEEEcC
Confidence 7776665555 788887655
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0034 Score=49.81 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=47.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~ 107 (228)
..+++++|+|+ |..|++++..|.+.|..+|+++.| +.++.+.+.. .+..... ++.+ . ++|+||++...
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nR----t~~ka~~La~--~~~~~~~~~l~~--l-~~DivInaTp~ 188 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTR----NPEKTSEIYG--EFKVISYDELSN--L-KGDVIINCTPK 188 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEES----CHHHHHHHCT--TSEEEEHHHHTT--C-CCSEEEECSST
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeC----CHHHHHHHHH--hcCcccHHHHHh--c-cCCEEEECCcc
Confidence 34789999996 889999999999999449999999 4444444333 2222222 2222 3 89999998754
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00096 Score=52.85 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=45.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+++++|+|+ |.+|++++..|.+.|..+|++..|.. ++.+.+.. .+.....+-......+.|+||++...
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~----~~a~~la~--~~~~~~~~~~~~~~~~aDiVInaTp~ 185 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTM----SRFNNWSL--NINKINLSHAESHLDEFDIIINTTPA 185 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCG----GGGTTCCS--CCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHH--hcccccHhhHHHHhcCCCEEEECccC
Confidence 4789999996 89999999999999933899999943 33332222 22222211111224478999998654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0033 Score=48.74 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=27.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DN 65 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r 65 (228)
+||||.|+|+ |.+|+.+++.+.+.+ +++++. ++
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~-~eLva~~d~ 35 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKG-HEIVGVIEN 35 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECS
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCC-CEEEEEEec
Confidence 4799999999 999999999999988 477764 55
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0049 Score=50.77 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=39.3
Q ss_pred CEEEEecCcchhHHHHHH-HHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-cccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVD-KLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~-~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~D~vi~~a~ 106 (228)
|+|.|.||||++|+.+++ .|.+.. ..++..+.....+.. ...+.. ....+. +..+ ..+.++|+||.|.+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~~~-~~~~~~--~~~~~~~~~~~Dvvf~a~~ 73 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--APNFGK-DAGMLH--DAFDIESLKQLDAVITCQG 73 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB--CCCSSS-CCCBCE--ETTCHHHHTTCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcC--HHHhCC-CceEEE--ecCChhHhccCCEEEECCC
Confidence 689999999999999999 555443 136665543222211 111111 112222 2222 22458999999885
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0039 Score=49.22 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
.+|+++|+|+ |.+|++++..|.+.| .+|++.+| +.+..+.+.....+.... ++ .....++|+||++....
T Consensus 128 ~~~~v~iiGa-G~~g~aia~~L~~~g-~~V~v~~r----~~~~~~~l~~~~g~~~~~-~~-~~~~~~aDiVi~atp~~ 197 (275)
T 2hk9_A 128 KEKSILVLGA-GGASRAVIYALVKEG-AKVFLWNR----TKEKAIKLAQKFPLEVVN-SP-EEVIDKVQVIVNTTSVG 197 (275)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHHT-CEEEEECS----SHHHHHHHTTTSCEEECS-CG-GGTGGGCSEEEECSSTT
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHcC-CEEEEEEC----CHHHHHHHHHHcCCeeeh-hH-HhhhcCCCEEEEeCCCC
Confidence 4689999995 899999999999999 79999988 333333333222333221 22 22335799999987543
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.02 Score=50.42 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=68.3
Q ss_pred hhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCc
Q 027129 25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPR 82 (228)
Q Consensus 25 ~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~ 82 (228)
.++.+. ..+|+|.|+ |.+|.++++.|...|..++++++...-.... .+..+.....
T Consensus 11 ~Q~kL~-~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~ 88 (640)
T 1y8q_B 11 LAEAVA-GGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKAN 88 (640)
T ss_dssp HHHHHH-HCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCE
T ss_pred HHHHHh-cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCe
Confidence 344444 589999996 9999999999999997799998764322111 1111222335
Q ss_pred eEEEeccCCCc-----ccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 83 FELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 83 ~~~~~~d~~~~-----~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
+..+..+++.. .+.++|+||.+.. |...-..+.++|.+.++.+|..++.+.+
T Consensus 89 V~a~~~~i~~~~~~~~~~~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iPlI~~g~~G~~ 145 (640)
T 1y8q_B 89 IVAYHDSIMNPDYNVEFFRQFILVMNALD-----------------NRAARNHVNRMCLAADVPLIESGTAGYL 145 (640)
T ss_dssp EEEEESCTTSTTSCHHHHTTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTE
T ss_pred EEEEecccchhhhhHhhhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEeccc
Confidence 66666666532 2347999998752 2233345667777888777776655433
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=47.20 Aligned_cols=73 Identities=14% Similarity=-0.072 Sum_probs=49.1
Q ss_pred CCCEEEEecCcchhHHH-HHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-CCccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~D~vi~~a~~~ 108 (228)
.+|+|+|+|. |..|.. +++.|.+.| ++|.+.++..... ....+ ....+.+..+...+... .++|.||...|+.
T Consensus 3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G-~~V~~~D~~~~~~--~~~~L-~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 3 AMKHIHIIGI-GGTFMGGLAAIAKEAG-FEVSGCDAKMYPP--MSTQL-EALGIDVYEGFDAAQLDEFKADVYVIGNVAK 77 (326)
T ss_dssp CCCEEEEESC-CSHHHHHHHHHHHHTT-CEEEEEESSCCTT--HHHHH-HHTTCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred CCcEEEEEEE-CHHHHHHHHHHHHhCC-CEEEEEcCCCCcH--HHHHH-HhCCCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence 3789999996 888885 899999999 9999999854321 11111 12356666553333222 4689999877653
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0053 Score=51.79 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=29.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|.|+| +|++|..++..|.+.| ++|++++|+
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G-~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVS 32 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEECC
Confidence 6899998 6999999999999999 999999983
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0057 Score=50.51 Aligned_cols=71 Identities=23% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCEEEEecCcchhHHHHHH-HHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-cccCCccEEEEccC
Q 027129 31 SNMRILVTGGAGFIGSHLVD-KLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC 106 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~-~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~D~vi~~a~ 106 (228)
..++|.|.||||++|+.|++ .|.+.. ..++..+.....+.. ...+.. ....+. +.++ ..+.++|+||.|.+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~~~-~~~~v~--~~~~~~~~~~vDvvf~a~~ 77 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGK--APSFAK-NETTLK--DATSIDDLKKCDVIITCQG 77 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSB--CCTTCC-SCCBCE--ETTCHHHHHTCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCC--HHHcCC-CceEEE--eCCChhHhcCCCEEEECCC
Confidence 35799999999999999999 555443 136665544222211 111111 111222 2222 12357999998875
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.01 Score=50.25 Aligned_cols=75 Identities=16% Similarity=0.028 Sum_probs=52.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCC-ccEEEEccCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-VDQIYHLACPA 108 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~D~vi~~a~~~ 108 (228)
.+++|+|+|. |..|.++++.|.+.| ++|.+.++...........+ ...++.+..+...+....+ +|.||...|+.
T Consensus 8 ~~k~v~viG~-G~sG~s~A~~l~~~G-~~V~~~D~~~~~~~~~~~~L-~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 8 ENKKVLVLGL-ARSGEAAARLLAKLG-AIVTVNDGKPFDENPTAQSL-LEEGIKVVCGSHPLELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp TTCEEEEECC-TTTHHHHHHHHHHTT-CEEEEEESSCGGGCHHHHHH-HHTTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCC-CEEEEEeCCcccCChHHHHH-HhCCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence 3789999997 889999999999999 99999998542212222222 2235677666544433345 89999887653
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.02 Score=48.57 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
++|+|+|.|+ |-+|...++.|++.| .+|++++.. ....+..+.....+.++..+.....+.+.|.||-+.
T Consensus 11 ~~~~vlVvGg-G~va~~k~~~L~~~g-a~V~vi~~~---~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at 80 (457)
T 1pjq_A 11 RDRDCLIVGG-GDVAERKARLLLEAG-ARLTVNALT---FIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (457)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTT-BEEEEEESS---CCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCc-CEEEEEcCC---CCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcC
Confidence 4799999996 899999999999999 999999873 222344444445788888887777777899888754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0056 Score=49.33 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.|+|.|+| .|.+|..+++.|.+.| + +|++.+|+ .+..........++....|..+....++|+||.+.
T Consensus 33 ~~kI~IIG-~G~mG~slA~~l~~~G-~~~~V~~~dr~----~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav 102 (314)
T 3ggo_A 33 MQNVLIVG-VGFMGGSFAKSLRRSG-FKGKIYGYDIN----PESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS 102 (314)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHTT-CCSEEEEECSC----HHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS
T ss_pred CCEEEEEe-eCHHHHHHHHHHHhCC-CCCEEEEEECC----HHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC
Confidence 47999999 6999999999999999 7 99999983 33333222222221112222210355899999876
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.002 Score=52.88 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=47.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~ 107 (228)
..+.+|+|+|+ |.+|..+++.+...| .+|++++++.. ..+..+++....-++.... |..+....++|+||.++|.
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~G-a~Vi~~~~~~~-~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSR-KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSST-THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEcCCHH-HHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 45789999999 999999999988889 78999998433 2333333321111111111 1111111479999999874
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0065 Score=52.53 Aligned_cols=103 Identities=9% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch----------------------hhhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|..+++.|...|..++++++...-.... .+.++.+...+..+..+
T Consensus 32 ~~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~ 110 (531)
T 1tt5_A 32 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 110 (531)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred cCeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 579999996 8899999999999997789888763211110 11122222344555444
Q ss_pred CCC------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
+.. ..+.++|+||.+.. |...-..+.++|.+.++.+|..++.+.+|
T Consensus 111 ~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~ln~~c~~~~iplI~~~~~G~~G 162 (531)
T 1tt5_A 111 PENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVG 162 (531)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHTTCCEEEEEEETTEE
T ss_pred cchhhhhhHHHhcCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCeE
Confidence 421 23457899998752 22233456678888888888877666554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=53.81 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=46.9
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC---c--ccCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---P--LLIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~--~~~~~D~vi~ 103 (228)
...+.+|+|+||+|.+|..+++.+...| .+|+++++ ....+..+++.. . ..+..+..+ . ...++|+||+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G-a~Vi~~~~--~~~~~~~~~lGa--~-~v~~~~~~~~~~~~~~~~g~D~vid 254 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD-AHVTAVCS--QDASELVRKLGA--D-DVIDYKSGSVEEQLKSLKPFDFILD 254 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC--GGGHHHHHHTTC--S-EEEETTSSCHHHHHHTSCCBSEEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEeC--hHHHHHHHHcCC--C-EEEECCchHHHHHHhhcCCCCEEEE
Confidence 3457899999999999999999998899 78988874 222333333211 1 122211111 0 1136999999
Q ss_pred ccCC
Q 027129 104 LACP 107 (228)
Q Consensus 104 ~a~~ 107 (228)
++|.
T Consensus 255 ~~g~ 258 (375)
T 2vn8_A 255 NVGG 258 (375)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 9874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.001 Score=53.74 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=46.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC---cccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~D~vi~~a~ 106 (228)
..+.+|+|+||+|.+|...++.+...| .+|+++.+.. ..+..+++... ..+..+-.+ ....++|+||.+.|
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~G-a~vi~~~~~~--~~~~~~~lGa~---~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKG-TTVITTASKR--NHAFLKALGAE---QCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEECHH--HHHHHHHHTCS---EEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeccc--hHHHHHHcCCC---EEEeCCCcchhhhhccCCCEEEECCC
Confidence 457899999999999999999999999 7898887521 12333332211 122222111 12257999999986
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.019 Score=48.72 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=57.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC---eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------ccCCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~D~ 100 (228)
.++|+|+| .|.||+.++..|.++... +|++.+...... +..... ++.+...+++.. .+.+.|+
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~~~~~~----g~~~~~~~Vdadnv~~~l~aLl~~~Dv 86 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-DVAQQY----GVSFKLQQITPQNYLEVIGSTLEENDF 86 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-CHHHHH----TCEEEECCCCTTTHHHHTGGGCCTTCE
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-hHHhhc----CCceeEEeccchhHHHHHHHHhcCCCE
Confidence 57899999 599999999999987534 788887754432 222111 234443333222 2234599
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEc
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~S 146 (228)
|||++-.. ....++++|.++|+.+|-++
T Consensus 87 VIN~s~~~------------------~~l~Im~acleaGv~YlDTa 114 (480)
T 2ph5_A 87 LIDVSIGI------------------SSLALIILCNQKGALYINAA 114 (480)
T ss_dssp EEECCSSS------------------CHHHHHHHHHHHTCEEEESS
T ss_pred EEECCccc------------------cCHHHHHHHHHcCCCEEECC
Confidence 99865211 11478889999987765444
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=54.29 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=46.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..+++|+|+|+ |.+|+.+++.|...|..+|++++|...+..+....+ +.+.+..+-......++|+||.+.+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----GGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----CCceecHHhHHHHhcCCCEEEEccCC
Confidence 35899999997 999999999999999339999998422111111111 12222211111122479999998764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.001 Score=54.73 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=45.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC--CcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT--EPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~D~vi~~a~~ 107 (228)
+++|+|+|+ |.+|+.+++.+...| .+|++++|+..+. +...+... ..+.....+.. .....+.|+||++++.
T Consensus 167 ~~~VlViGa-GgvG~~aa~~a~~~G-a~V~v~dr~~~r~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 167 PGKVVILGG-GVVGTEAAKMAVGLG-AQVQIFDINVERL-SYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCHHHH-HHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 489999998 999999999999999 7999999942211 11222111 11222211111 1122379999999875
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.042 Score=46.82 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=33.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhc-CCC-eEEEEcCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKN-EVIVVDNYFT 68 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~-~V~~~~r~~~ 68 (228)
.++|+|.|+| .|++|..++..|.+. | + +|++++++..
T Consensus 16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G-~~~V~~~D~~~~ 54 (478)
T 3g79_A 16 GPIKKIGVLG-MGYVGIPAAVLFADAPC-FEKVLGFQRNSK 54 (478)
T ss_dssp CSCCEEEEEC-CSTTHHHHHHHHHHSTT-CCEEEEECCCCT
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHhCC-CCeEEEEECChh
Confidence 3478999998 599999999999999 9 9 9999999655
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.004 Score=50.31 Aligned_cols=71 Identities=18% Similarity=0.032 Sum_probs=44.4
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc--C-CCcccCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--V-TEPLLIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--~-~~~~~~~~D~vi~~a~ 106 (228)
+|+|+||+|.+|...++.+...| .+|++++++.. ..+..+++....-++....+ . ......++|+||+++|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g 225 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAA-EHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 225 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTT-CHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred eEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCHH-HHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCc
Confidence 89999999999999999998899 78999988533 33333333211112211111 0 0011136899999986
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0069 Score=47.67 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=42.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|+|.|+| .|.+|..+++.|.+.| ++|++.+|+ .+....+...........|..+ . .++|+||.+.
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~~~----~~~~~~~~~~g~~~~~~~~~~~-~-~~~D~vi~av 65 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQ----QSTCEKAVERQLVDEAGQDLSL-L-QTAKIIFLCT 65 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC----HHHHHHHHHTTSCSEEESCGGG-G-TTCSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHhCCCCccccCCHHH-h-CCCCEEEEEC
Confidence 6899999 6999999999999999 899999883 3333222111111111222222 2 6789999876
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0037 Score=51.04 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+|+|.|+|+ |.+|..++..|.+.| ++|++++|+
T Consensus 3 ~~mki~iiG~-G~~G~~~a~~L~~~g-~~V~~~~r~ 36 (359)
T 1bg6_A 3 ESKTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDID 36 (359)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 3589999996 999999999999999 999999883
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0086 Score=45.20 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+|+|.|+| .|.+|..++..|.+.| ++|++.+|+
T Consensus 18 ~~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~~~~ 51 (209)
T 2raf_A 18 QGMEITIFG-KGNMGQAIGHNFEIAG-HEVTYYGSK 51 (209)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEcCC
Confidence 378999999 6999999999999999 999999884
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0045 Score=52.31 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|+||+|.||...++.+...| .+|+++++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~G-a~vi~~~~ 253 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGG-GIPVAVVS 253 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeC
Confidence 457899999999999999999999999 89988887
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0067 Score=48.40 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=29.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
||+|.|+|+ |.+|..++..|.+.| ++|++++|+
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g-~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGG-NDVTLIDQW 35 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCC-CcEEEEECC
Confidence 589999996 999999999999999 999999983
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=47.33 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=44.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|+|.|+| .|.+|..+++.|.+.| ++|++.+| +.+....+... .......+ ......++|+||-+.
T Consensus 7 ~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr----~~~~~~~~~~~-g~~~~~~~-~~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 7 DFHVGIVG-LGSMGMGAARSCLRAG-LSTWGADL----NPQACANLLAE-GACGAAAS-AREFAGVVDALVILV 72 (303)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS----CHHHHHHHHHT-TCSEEESS-STTTTTTCSEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCC-CeEEEEEC----CHHHHHHHHHc-CCccccCC-HHHHHhcCCEEEEEC
Confidence 57999998 5999999999999999 99999998 33333333221 11111112 122334688888776
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=50.51 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=46.1
Q ss_pred CC-EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc--C-CCcccCCccEEEEccC
Q 027129 32 NM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--V-TEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~-~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--~-~~~~~~~~D~vi~~a~ 106 (228)
+. +|+|+||+|.+|...++.+...| .+|++++++.. ..+..+++....-++....+ . ......++|++|+++|
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~G-a~vi~~~~~~~-~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g 226 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNRE-AADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG 226 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSS-THHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHH-HHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCc
Confidence 44 89999999999999999998899 78999988533 23333333211112211111 0 0111136899999986
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.016 Score=48.87 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|.+|.|+| .||+|..++..|.+.| ++|++++.+
T Consensus 21 m~~IaViG-lGYVGLp~A~~~A~~G-~~V~g~Did 53 (444)
T 3vtf_A 21 MASLSVLG-LGYVGVVHAVGFALLG-HRVVGYDVN 53 (444)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSC
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCC-CcEEEEECC
Confidence 78999998 6999999999999999 999999983
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.007 Score=49.27 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=45.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~D~v 101 (228)
..+.+|+|+||+|.+|..+++.+...| .+|+++ ++.. ..+..+++ ..+.+. +..+. ...++|+|
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~G-a~Vi~~-~~~~-~~~~~~~l----Ga~~i~-~~~~~~~~~~~~~~~~g~D~v 220 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARG-ARVFAT-ARGS-DLEYVRDL----GATPID-ASREPEDYAAEHTAGQGFDLV 220 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEE-ECHH-HHHHHHHH----TSEEEE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE-eCHH-HHHHHHHc----CCCEec-cCCCHHHHHHHHhcCCCceEE
Confidence 447899999999999999999999999 799988 5221 22223332 222222 11111 01369999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
|+++|
T Consensus 221 id~~g 225 (343)
T 3gaz_A 221 YDTLG 225 (343)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99986
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0034 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=29.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|.+|.|.||||++|+.+++.|.+....++..+..
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S 46 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 46 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 6799999999999999999999886567777654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0082 Score=50.85 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=29.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|.|+| .|++|..++..|.+.| ++|++++|+
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G-~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELG-ANVRCIDTD 34 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcC-CEEEEEECC
Confidence 7999998 4999999999999999 999999994
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.005 Score=49.69 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.+|+|.|+| .|.+|..+++.|.+.| ++|++.+| ..+....+... .+... +-......++|+||-+.
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G-~~V~~~dr----~~~~~~~l~~~-g~~~~--~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAG-YALQVWNR----TPARAASLAAL-GATIH--EQARAAARDADIVVSML 95 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTT-CEEEEECS----CHHHHHHHHTT-TCEEE--SSHHHHHTTCSEEEECC
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCC-CeEEEEcC----CHHHHHHHHHC-CCEee--CCHHHHHhcCCEEEEEC
Confidence 468999998 5999999999999999 99999998 44444333332 22221 11112234688888766
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=53.10 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+.+|+|+|+ |.+|..+++.+...| .+|++++++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~ 220 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFG-SKVTVISTS 220 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCC
Confidence 5789999996 999999999999999 799999884
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=48.54 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=29.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+|+|.|+| .|++|..++..|.+ | ++|++++++
T Consensus 35 ~~mkIaVIG-lG~mG~~lA~~La~-G-~~V~~~D~~ 67 (432)
T 3pid_A 35 EFMKITISG-TGYVGLSNGVLIAQ-N-HEVVALDIV 67 (432)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHT-T-SEEEEECSC
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHc-C-CeEEEEecC
Confidence 368999998 59999999998887 8 999999993
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.008 Score=48.02 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=46.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
..+++++|+|+ |.+|+.+++.|...| .+|++.+|.. +....... ..++....+..+....++|+|+.+..
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~G-~~V~~~d~~~----~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAALG-ANVKVGARSS----AHLARITE-MGLVPFHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSH----HHHHHHHH-TTCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHCC-CEEEEEECCH----HHHHHHHH-CCCeEEchhhHHHHhhCCCEEEECCC
Confidence 34799999995 999999999999999 8999999842 22221111 12333322222233458999999874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0097 Score=48.30 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=31.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+++|+|+|| |.+|..+++.+...| .+|++++++
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~G-a~Vi~~~~~ 197 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMG-LNVVAVDIG 197 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 45789999999 779999999999999 899999883
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0069 Score=49.73 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC--CCchhhhhhcCCCceEEEec-cCCCcc---cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRH-DVTEPL---LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~-d~~~~~---~~~~D~vi~~a 105 (228)
+.+|+|+|| |.+|..+++.+...| .+|++++++.. ...+..+++ ..+.+.. |+.+.. ..++|+||+++
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~~~----ga~~v~~~~~~~~~~~~~~~~d~vid~~ 254 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYG-LEVWMANRREPTEVEQTVIEET----KTNYYNSSNGYDKLKDSVGKFDVIIDAT 254 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHT-CEEEEEESSCCCHHHHHHHHHH----TCEEEECTTCSHHHHHHHCCEEEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCCccchHHHHHHHHh----CCceechHHHHHHHHHhCCCCCEEEECC
Confidence 789999999 999999999999999 79999998531 111222222 2333311 111110 13699999999
Q ss_pred CC
Q 027129 106 CP 107 (228)
Q Consensus 106 ~~ 107 (228)
|.
T Consensus 255 g~ 256 (366)
T 2cdc_A 255 GA 256 (366)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0043 Score=49.00 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=41.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
||+|.|+| .|.+|..++..|.+ | ++|++.+|+.. ....+... .+... + ......++|+||.+..
T Consensus 1 M~~i~iiG-~G~~G~~~a~~l~~-g-~~V~~~~~~~~----~~~~~~~~-g~~~~--~-~~~~~~~~D~vi~~v~ 64 (289)
T 2cvz_A 1 MEKVAFIG-LGAMGYPMAGHLAR-R-FPTLVWNRTFE----KALRHQEE-FGSEA--V-PLERVAEARVIFTCLP 64 (289)
T ss_dssp -CCEEEEC-CSTTHHHHHHHHHT-T-SCEEEECSSTH----HHHHHHHH-HCCEE--C-CGGGGGGCSEEEECCS
T ss_pred CCeEEEEc-ccHHHHHHHHHHhC-C-CeEEEEeCCHH----HHHHHHHC-CCccc--C-HHHHHhCCCEEEEeCC
Confidence 57899998 59999999999999 9 99999988432 22211110 12222 1 2223347888888763
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0045 Score=49.73 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=32.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
..||+|.|+| .|.+|..+++.|.+.| ++|++.+|+.
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G-~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNG-FKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSG
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence 4479999998 5999999999999999 9999999943
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.015 Score=47.39 Aligned_cols=70 Identities=20% Similarity=0.085 Sum_probs=46.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..+.+|+|+|+ |.+|...++.+...| .+|++++++.. ..+..+++.. . ..+ .|. +....++|+||.++|.
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~G-a~Vi~~~~~~~-~~~~~~~lGa-~--~v~-~~~-~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMG-AEVSVFARNEH-KKQDALSMGV-K--HFY-TDP-KQCKEELDFIISTIPT 244 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTT-CEEEEECSSST-THHHHHHTTC-S--EEE-SSG-GGCCSCEEEEEECCCS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCC-CeEEEEeCCHH-HHHHHHhcCC-C--eec-CCH-HHHhcCCCEEEECCCc
Confidence 45789999997 999999999998899 79999988443 2333333221 1 122 221 1112289999999873
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0054 Score=49.98 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=32.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+.+|+|+||+|.+|...++.+...| .+|++++++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G-a~Vi~~~~~ 184 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG-LRVITTASR 184 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 57899999999999999999999999 799999883
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0018 Score=53.62 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+++|+|+|+ |.+|+.+++.+...| .+|++++|+
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~G-a~V~~~d~~ 200 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMG-ATVTVLDIN 200 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 3789999998 999999999999999 799999983
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.086 Score=36.11 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=53.9
Q ss_pred CCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
++++|.|.||+ +-.|..+++.|++.| ++|+.+... .+... +.. ...++.+.. . +|.++-+..
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~----~~~i~------G~~-~y~sl~dlp-~-vDlavi~~p- 67 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRK----KGEVL------GKT-IINERPVIE-G-VDTVTLYIN- 67 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSS----CSEET------TEE-CBCSCCCCT-T-CCEEEECSC-
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCC----CCcCC------Cee-ccCChHHCC-C-CCEEEEEeC-
Confidence 36889999997 578999999999999 899998662 11111 111 122344433 2 888776542
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~ 148 (228)
-.....+++.|.+.|+|.|.+++.
T Consensus 68 -----------------~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 68 -----------------PQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp -----------------HHHHGGGHHHHHHHCCSEEEECTT
T ss_pred -----------------HHHHHHHHHHHHhcCCCEEEECCC
Confidence 122235566677778754556653
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.014 Score=49.45 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=31.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|+||+|.+|...++.+...| .+|+++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~G-a~vi~~~~ 261 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGG-ANPICVVS 261 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcC-CeEEEEEC
Confidence 447899999999999999999999999 89888887
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0075 Score=47.03 Aligned_cols=69 Identities=10% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+ +++|+|+ |..|++++..|.+.|..+|++.+| +.++.+.+... +.....+.......++|+||++...
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR----~~~ka~~la~~--~~~~~~~~~~~~~~~aDiVInatp~ 176 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNR----TIERAKALDFP--VKIFSLDQLDEVVKKAKSLFNTTSV 176 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEES----CHHHHHTCCSS--CEEEEGGGHHHHHHTCSEEEECSST
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeC----CHHHHHHHHHH--cccCCHHHHHhhhcCCCEEEECCCC
Confidence 36 8999996 999999999999999348999999 44444443332 2212221111223479999998743
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.021 Score=45.72 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
..+.+|+|+|| |.+|...++.+...| .+|++++ + ....+..+++ ..+.+--| .+....++|+||.+.|
T Consensus 141 ~~g~~VlV~Ga-G~vG~~a~qlak~~G-a~Vi~~~-~-~~~~~~~~~l----Ga~~v~~d-~~~v~~g~Dvv~d~~g 208 (315)
T 3goh_A 141 TKQREVLIVGF-GAVNNLLTQMLNNAG-YVVDLVS-A-SLSQALAAKR----GVRHLYRE-PSQVTQKYFAIFDAVN 208 (315)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEC-S-SCCHHHHHHH----TEEEEESS-GGGCCSCEEEEECC--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcC-CEEEEEE-C-hhhHHHHHHc----CCCEEEcC-HHHhCCCccEEEECCC
Confidence 45789999999 999999999998899 7999998 3 3344444443 22322213 2222347999999986
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0087 Score=46.74 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=43.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCe-EEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|+|.|+|+ |.+|..+++.|.+.| ++ |.+.+|+ .+....+.....+... .|. .....++|+||.+.
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g-~~~v~~~~~~----~~~~~~~~~~~g~~~~-~~~-~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKG-FRIVQVYSRT----EESARELAQKVEAEYT-TDL-AEVNPYAKLYIVSL 76 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHT-CCEEEEECSS----HHHHHHHHHHTTCEEE-SCG-GGSCSCCSEEEECC
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCC-CeEEEEEeCC----HHHHHHHHHHcCCcee-CCH-HHHhcCCCEEEEec
Confidence 578999996 999999999999999 87 8888883 3333222211123221 122 12334799999876
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=47.56 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=32.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
...+.+|+|+||+|.+|...++.+...| .+++++.+...
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~G-a~vi~~~~~~~ 203 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAALG-LRTINVVRDRP 203 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEECCCS
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHHcC-CEEEEEecCcc
Confidence 3457899999999999999999888889 78888776433
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0048 Score=50.67 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=30.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
++++|+|.|+| .|.+|..+++.|.+.| ++|++.+|+
T Consensus 19 Mm~~mkIgiIG-lG~mG~~~A~~L~~~G-~~V~v~dr~ 54 (358)
T 4e21_A 19 YFQSMQIGMIG-LGRMGADMVRRLRKGG-HECVVYDLN 54 (358)
T ss_dssp ---CCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred hhcCCEEEEEC-chHHHHHHHHHHHhCC-CEEEEEeCC
Confidence 34568999998 6999999999999999 999999993
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=45.27 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=42.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-CccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~D~vi~~a 105 (228)
||+|.|+| .|.+|..+++.|.+.| + +|++.+|+ .+................|. ..... ++|+||-+.
T Consensus 1 m~~I~iIG-~G~mG~~~a~~l~~~g-~~~~V~~~d~~----~~~~~~~~~~g~~~~~~~~~-~~~~~~~aDvVilav 70 (281)
T 2g5c_A 1 MQNVLIVG-VGFMGGSFAKSLRRSG-FKGKIYGYDIN----PESISKAVDLGIIDEGTTSI-AKVEDFSPDFVMLSS 70 (281)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTT-CCSEEEEECSC----HHHHHHHHHTTSCSEEESCG-GGGGGTCCSEEEECS
T ss_pred CcEEEEEe-cCHHHHHHHHHHHhcC-CCcEEEEEeCC----HHHHHHHHHCCCcccccCCH-HHHhcCCCCEEEEcC
Confidence 57999999 6999999999999998 7 89999883 33222221111111111121 12344 789999876
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.023 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=31.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++|+|.|+ |.+|.++++.|...|..+++++++..
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 689999996 99999999999999977899987743
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0047 Score=50.91 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=45.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..+.+|+|+|+ |.+|...++.+...| .+|++++++.. ..+..+++....-++....|.......++|+||.++|.
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~G-a~Vi~~~~~~~-~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~ 267 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAMG-AHVVAFTTSEA-KREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA 267 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHH-HHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCC
Confidence 45789999998 789999999888889 78999988432 22223332111111111111111112479999999873
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.011 Score=47.02 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=46.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.+++++|+| .|.+|+.+++.|...| .+|++.+|.. +....... ..++....+-.+....+.|+|+.+..
T Consensus 154 ~g~~v~IiG-~G~iG~~~a~~l~~~G-~~V~~~dr~~----~~~~~~~~-~g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 154 HGANVAVLG-LGRVGMSVARKFAALG-AKVKVGARES----DLLARIAE-MGMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSH----HHHHHHHH-TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCC-CEEEEEECCH----HHHHHHHH-CCCeecChhhHHHHhcCCCEEEECCC
Confidence 479999999 5999999999999999 8999999842 22211111 12333322212233468999998873
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.073 Score=43.18 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc--CCCeEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVD 64 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~ 64 (228)
+++|.|.|+ |.+|+.+++.|.+. ...+|+++.
T Consensus 1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaIn 34 (337)
T 1rm4_O 1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVIN 34 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 368999999 99999999999987 435666654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.084 Score=37.22 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=33.1
Q ss_pred chhhhccCCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcC
Q 027129 24 RFSKFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.+..++.+.++|.|+|++ |.+|..+++.|.+.| ++|+.+..
T Consensus 14 ~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp 57 (144)
T 2d59_A 14 DIREILTRYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNP 57 (144)
T ss_dssp HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECT
T ss_pred HHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECC
Confidence 344555447899999998 899999999999999 88777654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0056 Score=48.74 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|+|.|+| .|.+|..+++.|.+.| ++|++.+|+ .+....+... .+... .+ ......++|+||.+.
T Consensus 4 ~~~i~iiG-~G~~G~~~a~~l~~~g-~~V~~~~~~----~~~~~~~~~~-g~~~~-~~-~~~~~~~~D~vi~~v 68 (301)
T 3cky_A 4 SIKIGFIG-LGAMGKPMAINLLKEG-VTVYAFDLM----EANVAAVVAQ-GAQAC-EN-NQKVAAASDIIFTSL 68 (301)
T ss_dssp CCEEEEEC-CCTTHHHHHHHHHHTT-CEEEEECSS----HHHHHHHHTT-TCEEC-SS-HHHHHHHCSEEEECC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCC-CeEEEEeCC----HHHHHHHHHC-CCeec-CC-HHHHHhCCCEEEEEC
Confidence 57999998 5999999999999999 999999883 3333333221 22211 11 111223578888776
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.033 Score=42.42 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~ 64 (228)
-|+++|+|++|-+|+.+++.....+ .++++..
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~~~-~elv~~i 43 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSEKG-HELVLKV 43 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cceeEEEEecCHHHHHHHHHHhCCC-CEEEEEE
Confidence 4899999999999999988665556 7766553
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.11 Score=36.42 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.8
Q ss_pred cCCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.+.++|.|+|++ |.+|..+++.|++.| ++|+.+++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp 49 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNP 49 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECT
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCC
Confidence 346899999987 899999999999999 89888776
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=47.64 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=49.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a 105 (228)
.++++|+|+ |.+|+.+++.|.+.| + |++++++ .+... +. ...+.++.+|.++.. ..++|.|+-+.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~----~~~~~-~~-~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDE----NVRKK-VL-RSGANFVHGDPTRVSDLEKANVRGARAVIVDL 185 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCG----GGHHH-HH-HTTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCC----hhhhh-HH-hCCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence 468999996 999999999999999 8 9998873 33333 22 246889999998864 34788888765
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
+
T Consensus 186 ~ 186 (336)
T 1lnq_A 186 E 186 (336)
T ss_dssp S
T ss_pred C
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 228 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 2e-78 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-53 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 4e-49 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-46 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 9e-43 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-39 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-38 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 6e-36 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-35 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 2e-31 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 3e-31 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 2e-30 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 4e-30 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 8e-27 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-23 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-19 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 4e-18 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 5e-16 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 4e-13 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 7e-12 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 3e-11 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-11 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 9e-11 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-10 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 1e-10 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 2e-10 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 3e-10 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 8e-10 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 1e-06 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 2e-05 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-04 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 0.004 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 236 bits (602), Expect = 2e-78
Identities = 143/195 (73%), Positives = 166/195 (85%), Gaps = 1/195 (0%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
RIL+TGGAGF+GSHL DKLM + +EV VVDN+FTG K N+ WIGH FELI HDV EP
Sbjct: 3 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61
Query: 94 LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
L IEVDQIYHLA PASP Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 62 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 121
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 122 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 181
Query: 214 DDGRVVSNFIAQAIR 228
+DGRVVSNFI QA++
Sbjct: 182 NDGRVVSNFILQALQ 196
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 174 bits (442), Expect = 1e-53
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 25/219 (11%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
M+IL+TGGAGFIGS +V +++N ++ V+ +D + G+ ++L R+ D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 92 EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
+ I D + HLA + P I+TN++GT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 141 ------RILLTSTSEVYGDPLVHPQDES-----YWGNVNPIGVRSCYDEGKRVAETLMFD 189
R ST EVYGD + E+ + S Y K ++ L+
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
+ R +G+ + N YGP + +++ I A+
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALE 217
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 162 bits (410), Expect = 4e-49
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 24/213 (11%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKW--IGHPRFELIR 87
L+TG G GS+L + L+E EV + + T D++ + +P+F L
Sbjct: 3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 88 HDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
D+++ + D++Y+L + +P T + +GTL +L + +G
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121
Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
R STSE+YG PQ E+ P RS Y K A + +Y +G+
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 197 EIRIARIFNTYGPRMNID-DGRVVSNFIAQAIR 228
+FN PR R ++ IA +
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIANIAQ 209
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 154 bits (391), Expect = 1e-46
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 33 MRILVTGGAGFIGSHLVDKLMEN-----EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
MR+LVTGGAGFIGSH V +L+ +EVIV+D+ + G++ NL PR +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87 RHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
D+ + L+ D I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
R++ ST++VYG ES +P+ S Y K ++ + YHR +G+++RI
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
R N YGP + + +++ F+ +
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLD 201
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 9e-43
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 15/186 (8%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ R+ + G G +GS + +L + + +V+ +D L + +
Sbjct: 1 AKQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRT-----RDELNLLDSRAVHDFFASE- 53
Query: 91 TEPLLIEVDQIYHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTS 148
+DQ+Y A + P I N++ N++ A + ++L +S
Sbjct: 54 ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 107
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
+Y P ES Y K L Y+RQ+G + R N YG
Sbjct: 108 CIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 167
Query: 209 PRMNID 214
P N
Sbjct: 168 PHDNFH 173
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 136 bits (343), Expect = 2e-39
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 24/200 (12%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIG---HPRFELIR 87
L+TG G GS+L + L+E EV + + TG ++L K +L
Sbjct: 4 ALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 62
Query: 88 HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
D+T+ + + +IY+L + T + +GTL +L K G
Sbjct: 63 GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 122
Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
+ STSE+YG PQ E+ P RS Y K A ++ ++ + +
Sbjct: 123 INSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNL 177
Query: 197 EIRIARIFNTYGPRMNIDDG 216
+FN PR +
Sbjct: 178 FAVNGILFNHESPRRGANFV 197
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 135 bits (339), Expect = 1e-38
Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
I+VTGGAGFIGS+ V + N + V V+D + I R EL+ D+
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62
Query: 92 EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
+ L++ D I H A + +P I TN IGT +L A++ R S
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122
Query: 147 TSEVYGD-------PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
T EVYGD P + S Y K ++ ++ + R G++
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKAT 182
Query: 200 IARIFNTYGPRMNID 214
I+ N YGP +I+
Sbjct: 183 ISNCSNNYGPYQHIE 197
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 127 bits (319), Expect = 6e-36
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 16/207 (7%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
MR+LVTGG+G+IGSH +L++N ++VI++DN + L + +G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59
Query: 91 TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
L+ +D + H A + P++ NV GTL ++ +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIA 201
+ +S++ VYGD P ES+ +S Y + K + E ++ D + I +
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 202 RIFNTYGPRMNIDDGRVVSNFIAQAIR 228
R FN G + D G +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMP 202
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 126 bits (318), Expect = 1e-35
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IG 79
+ L+TG AGFIGS+L++ L++ +V+ +DN+ TG + NL +
Sbjct: 10 KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 68
Query: 80 HPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
F+ I+ D+ VD + H A S +P+ + TN+ G LNML
Sbjct: 69 WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 128
Query: 135 AKRVGARILL-TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
A+ + ++S YGD P+ E G S Y K V E + R
Sbjct: 129 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK-----PLSPYAVTKYVNELYADVFSRC 183
Query: 194 HGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIR 228
+G R FN +G R + + V+ + + I+
Sbjct: 184 YGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ 220
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 116 bits (290), Expect = 2e-31
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 12/207 (5%)
Query: 19 TPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW 77
T L +++ S N++I +TG GFI SH+ +L E + VI D +++ +
Sbjct: 1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASDWK---KNEHMTED 56
Query: 78 IGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTI----KTNVIGTLNMLG 133
+ F L+ V E L + + H+ A+ + N + + NM+
Sbjct: 57 MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIE 116
Query: 134 LAKRVG-ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
A+ G R S++ +Y L + P + + K E L Y
Sbjct: 117 AARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHY 176
Query: 191 HRQHGIEIRIARIFNTYGPRMNIDDGR 217
++ GIE RI R N YGP GR
Sbjct: 177 NKDFGIECRIGRFHNIYGPFGTWKGGR 203
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 114 bits (286), Expect = 3e-31
Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 17/206 (8%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
LVTG G G++L L+E V + + ++ LR+ + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60
Query: 93 PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARIL 143
+ + ++Y+LA + PV T + +G ++L ++ R
Sbjct: 61 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120
Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
STSE++G QDE+ P RS Y K + +Y G+ +
Sbjct: 121 QASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGIL 175
Query: 204 FNTYGPRMNID-DGRVVSNFIAQAIR 228
FN P I+ R V++ +A+
Sbjct: 176 FNHESPLRGIEFVTRKVTDAVARIKL 201
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (281), Expect = 2e-30
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTE 92
+LVTGGAG+IGSH V +L+EN + +V DN + D++ + + D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 62
Query: 93 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
+E +D + H A + P++ N++GT+ +L L ++ +
Sbjct: 63 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 122
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIEIRIAR 202
+S++ VYGD P P+G + Y K E ++ D + + + I R
Sbjct: 123 SSSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIR 228
FN G + G +
Sbjct: 182 YFNPIGAHPSGLIGEDPLGIPNNLLP 207
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 112 bits (279), Expect = 4e-30
Identities = 54/202 (26%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
++L+TGG GF+GS+L + ++IV DN G+ DNL FE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 93 PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA--KRVGARIL 143
+ D +HLA + NP + NV GTLN+L I+
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 144 LTSTSEVYGDPLVHPQDESYWGNVN-----------PIGVRSCYDEGKRVAETLMFDYHR 192
+ST++VYGD + +E+ + S Y K A+ M DY R
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180
Query: 193 QHGIEIRIARIFNTYGPRMNID 214
G+ + R + YG R
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFAT 202
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 103 bits (256), Expect = 8e-27
Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 25/200 (12%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLR---KWIGHPRFELI 86
L+TG G GS+L + L+ + EV + + T +++ + +L
Sbjct: 3 IALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61
Query: 87 RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
D+T+ + D++Y+LA + P T G L +L +
Sbjct: 62 YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121
Query: 140 AR-----ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
+ S PQ E+ P RS Y K A +Y +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAY 176
Query: 195 GIEIRIARIFNTYGPRMNID 214
G+ +FN PR +
Sbjct: 177 GLFACNGILFNHESPRRGEN 196
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.0 bits (232), Expect = 3e-23
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 20/211 (9%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--------KWIGHPRFEL 85
++LVTGGAG+IGSH V +L+E +V+DN+ + + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 86 IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
D+ + ++ + H A + P+ + N+ GT+ +L + K
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY-HRQHGIE 197
G + L+ S+S +PQ G + Y + K E ++ D
Sbjct: 123 GVKNLVFSSSATVYG---NPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 198 IRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228
+ R FN G + G +
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMP 210
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 84.5 bits (207), Expect = 1e-19
Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 36/234 (15%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------KD 72
S+MR+LV GGAG+IGSH V L+ + + V++VD+ D
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 73 NLRKWIGHPRFELIRHDVTEPLLIE--------VDQIYHLACPASPIFYKYNPVKTIKTN 124
+ L DV + +D + H+ + +P+K N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV---RSCYDEGKR 181
V+G L +L ++ S+S + ++ S Y E K
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIR 228
+AE ++ D +GI+ R FN G + D G ++ + + +
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 79.6 bits (194), Expect = 4e-18
Identities = 51/190 (26%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
MR+L+ G GFIG+HL ++L+ + EV +D D + +++ HP F + D++
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 92 -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
E + + D + L A+PI Y NP++ + + L ++ + RI+ S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGV--RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
TSEVYG DE + + R Y K++ + +++ Y + G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 205 NTYGPRMNID 214
N GPR++
Sbjct: 177 NWMGPRLDNL 186
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 73.7 bits (179), Expect = 5e-16
Identities = 36/212 (16%), Positives = 62/212 (29%), Gaps = 17/212 (8%)
Query: 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
+ F+Q R+ VTG GF G L L V +
Sbjct: 3 NSFWQ-GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQS 60
Query: 86 IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL---- 134
D+ + + ++H+A PV+T TNV+GT+ +L
Sbjct: 61 EIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV 120
Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV---AETLMFDYH 191
+ + + + ++ G +P E +
Sbjct: 121 GGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANY 180
Query: 192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFI 223
QHG + R N G D R+V + +
Sbjct: 181 GQHGTAVATVRAGNVIGGGDWALD-RIVPDIL 211
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 65.0 bits (156), Expect = 4e-13
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
I+VTGGAGFIGS++V L + +++VVDN G+K + + + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 95 LIEVDQIYHLACP 107
+ + A
Sbjct: 61 MAGEEFGDVEAIF 73
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 61.5 bits (147), Expect = 7e-12
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----------------- 75
R++V GG G+ G L + EV +VDN D+
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 76 -KWIGHPRFELIRHDVTEPLLIE 97
K + EL D+ + +
Sbjct: 61 WKALTGKSIELYVGDICDFEFLA 83
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 59.5 bits (142), Expect = 3e-11
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 27/182 (14%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDV 90
M+IL+TG G +G + +L + + EVI D + + K+ +
Sbjct: 2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP------- 53
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150
+ + + A + + K N IG N+ A VGA I+ ST V
Sbjct: 54 --------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYV 105
Query: 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210
+ P E N ++ + + + + I R YG
Sbjct: 106 FDGEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDG 156
Query: 211 MN 212
N
Sbjct: 157 NN 158
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 59.0 bits (141), Expect = 5e-11
Identities = 19/186 (10%), Positives = 47/186 (25%), Gaps = 24/186 (12%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELI 86
R+L+ GG G+IG +V+ + + V+ S K + + +LI
Sbjct: 1 DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59
Query: 87 RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
+ + + ++ + + + + + + + L S
Sbjct: 60 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+ D + H + + + I
Sbjct: 115 EFGMDPDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 207 YGPRMN 212
G
Sbjct: 160 AGYFAG 165
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.3 bits (137), Expect = 9e-11
Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 9/135 (6%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ +I + G G G + + ++ EV V+ + + ++++
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60
Query: 91 TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
+ + D + L N + G N++ K G ++ +++
Sbjct: 61 VDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113
Query: 150 VYGDPLVHPQDESYW 164
+ DP P
Sbjct: 114 LLWDPTKVPPRLQAV 128
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 57.9 bits (138), Expect = 1e-10
Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 8/137 (5%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHD 89
+LVTG GF+ SH+V++L+E+ + NL+K + D
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARS--ASKLANLQKRWDAKYPGRFETAVVED 70
Query: 90 VTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
+ + + + +A AS + + + + + GTLN L A + T
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130
Query: 148 SEVYGDPLVHPQDESYW 164
S + P E +
Sbjct: 131 SSTVSALIPKPNVEGIY 147
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 57.1 bits (136), Expect = 1e-10
Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 4/185 (2%)
Query: 31 SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRH 88
+N+ +LVTG +G G + KL E ++ + + + + ++
Sbjct: 1 ANLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 59
Query: 89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
D P +D + L + ++P K + I + +
Sbjct: 60 DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 119
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
+V G S G + + V + Y G I R
Sbjct: 120 KVAGVK-HIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLD 178
Query: 209 PRMNI 213
+
Sbjct: 179 KEGGV 183
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 57.3 bits (136), Expect = 2e-10
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)
Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
M IL+ G G +G L L +I +D + + + + V +
Sbjct: 1 MNILLFGKTGQVGWELQRSL--APVGNLIALDVHSKEFCGDFSN------PKGVAETVRK 52
Query: 93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
+ D I + A + + P N + A GA ++ ST V+
Sbjct: 53 ---LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109
Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
P E+ + + ++ K + + +
Sbjct: 110 GTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTS 152
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 56.7 bits (135), Expect = 3e-10
Identities = 17/186 (9%), Positives = 44/186 (23%), Gaps = 30/186 (16%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELI 86
S RIL+ G G+IG H+ ++ + ++ T S ++ + + ++
Sbjct: 2 SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV 60
Query: 87 RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
+ + + ++ + I A + +
Sbjct: 61 HGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIK----------------AIKEVGT 104
Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
+ + D + + GI
Sbjct: 105 VKRFFPSEFGNDVDNVHAVEPAKSVFEVKAK---------VRRAIEAEGIPYTYVSSNCF 155
Query: 207 YGPRMN 212
G +
Sbjct: 156 AGYFLR 161
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 55.8 bits (133), Expect = 8e-10
Identities = 22/205 (10%), Positives = 43/205 (20%), Gaps = 10/205 (4%)
Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
Q I V G G G+ L+ + V + + P L +
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS---LKGLIAEELQAIPNVTLFQGP 57
Query: 90 VTEP------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
+ L + + GT+ + +
Sbjct: 58 LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY 117
Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
+ P ++ + V Y+ +F
Sbjct: 118 GPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHA 177
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAI 227
F+ P +D V + Q
Sbjct: 178 PFDPDIPLPWLDAEHDVGPALLQIF 202
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
F N + + G +G G L+ +++E + +
Sbjct: 9 DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 45
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.7 bits (96), Expect = 2e-05
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
R+L+ G G G HL+D+++ ++
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVIA 33
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 8/116 (6%), Positives = 23/116 (19%), Gaps = 6/116 (5%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
+ +V G G +G L V+ + + + +
Sbjct: 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAET 80
Query: 91 T-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
+ ++ + + ++ N G
Sbjct: 81 ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 35.0 bits (79), Expect = 0.004
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHD 89
+ +L+ G+GF+ +D L ++ +V V +K P + D
Sbjct: 1 ATKSVLM-LGSGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDD 58
Query: 90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL----NMLGLAKRVGA----- 140
+ + P + K +V+ T M+ L +
Sbjct: 59 AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 118
Query: 141 --RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
I ++ +++ G P G ++ GV + ++ + LM + ++GIE
Sbjct: 119 MNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAP--MNSKINDPLMKELKEKYGIEC 176
Query: 199 R 199
+
Sbjct: 177 K 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.98 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.97 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.97 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.97 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.97 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.96 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.96 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.96 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.96 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.95 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.95 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.95 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.94 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.94 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.93 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.93 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.92 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.9 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.9 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.9 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.89 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.87 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.81 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.81 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.81 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.81 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.81 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.8 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.8 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.8 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.8 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.8 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.8 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.8 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.8 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.79 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.79 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.79 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.79 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.79 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.79 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.79 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.79 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.79 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.79 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.78 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.78 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.78 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.77 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.77 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.77 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.77 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.76 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.76 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.76 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.75 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.75 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.75 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.74 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.74 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.74 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.74 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.74 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.74 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.74 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.74 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.72 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.72 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.72 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.72 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.72 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.71 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.71 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.69 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.69 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.68 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.68 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.67 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.67 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.67 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.67 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.66 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.64 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.53 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.52 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.52 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.47 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.47 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.4 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.36 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.36 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.14 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.51 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.5 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.49 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.39 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.36 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.34 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.31 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.3 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.27 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.25 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.25 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.23 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.2 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.16 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.16 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 98.15 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.12 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.09 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.07 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.06 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 98.05 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.03 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.97 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.96 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.94 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.91 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.88 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.87 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.84 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.81 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.72 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.69 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.69 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.64 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.61 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.59 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.58 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.56 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.54 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.49 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.46 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.4 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.37 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.37 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.36 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 97.31 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.26 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 97.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.22 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.18 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.13 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.1 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.05 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.96 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.96 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.95 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.94 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.89 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.87 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.87 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.8 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.79 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.75 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.71 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.66 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.59 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.56 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.55 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.49 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.45 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.44 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.43 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.43 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.4 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.37 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.37 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 96.35 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.32 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.3 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.23 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.22 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.21 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.2 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 96.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.16 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.09 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.01 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.01 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.99 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.99 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.95 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.93 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.92 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.9 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.85 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.83 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.81 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.79 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.73 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.7 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.63 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.63 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.59 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.58 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.57 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.49 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.48 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.47 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.46 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 95.45 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 95.39 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.35 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.31 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.29 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.29 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.27 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.26 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.17 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.09 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.08 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.01 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.96 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 94.94 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.89 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.87 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.84 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.8 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.72 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.7 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.65 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.63 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.58 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.54 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.52 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.42 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.39 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.38 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.31 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.29 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.24 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.16 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.13 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.11 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.04 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.98 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.57 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.55 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 93.47 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.47 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.39 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.14 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.13 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.09 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.04 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.71 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 92.65 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.62 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.48 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.4 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.33 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.14 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 91.99 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.92 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.92 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.83 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 91.71 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 91.37 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 91.34 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.3 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.26 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 91.18 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.79 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.72 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 90.72 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.66 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.48 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.44 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 90.04 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 89.99 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 89.61 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 89.38 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.14 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 88.94 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 88.73 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 88.66 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 88.4 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 88.36 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 88.3 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 88.21 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.93 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 87.83 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 87.55 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.16 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 87.07 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 86.76 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 86.66 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 86.6 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 86.2 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 86.19 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 85.71 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 85.46 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 84.65 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 84.39 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 83.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 83.77 | |
| d1m3sa_ | 186 | Hypothetical protein YckF {Bacillus subtilis [TaxI | 83.41 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 83.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 83.33 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 83.18 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.05 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 83.05 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 82.48 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 82.37 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 82.28 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.17 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 82.08 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 82.07 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 81.92 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 81.71 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 81.37 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 81.31 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 81.25 | |
| d2ax3a2 | 211 | Hypothetical protein TM0922, N-terminal domain {Th | 80.34 | |
| d1jeoa_ | 177 | Probable 3-hexulose-6-phosphate isomerase MJ1247 { | 80.25 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 80.18 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 80.11 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-37 Score=248.50 Aligned_cols=195 Identities=73% Similarity=1.232 Sum_probs=174.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
.||||||||+||||++++++|+++| ++|+++++.................+++...|..+....++|+|||+|+.....
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~ 79 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPP 79 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCch
Confidence 3799999999999999999999999 999999986665555555556667899999999998888999999999977665
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHH
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 191 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~ 191 (228)
....++...+++|+.++.++++++++.++|+||+||..+|+.....+.+|+.+...+|..|.+.|+.+|.++|.+++.++
T Consensus 80 ~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~ 159 (312)
T d2b69a1 80 NYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYM 159 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999999999999888888888877777788899999999999999999999
Q ss_pred HHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 192 ~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+.++++++++||++||||++....+++++.++.+++
T Consensus 160 ~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~ 195 (312)
T d2b69a1 160 KQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQAL 195 (312)
T ss_dssp HHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHH
T ss_pred HHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHH
Confidence 999999999999999999988776789999998875
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-32 Score=226.61 Aligned_cols=176 Identities=27% Similarity=0.337 Sum_probs=145.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhh-----hhcCCCceEEEeccCCCcccC-------Ccc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLR-----KWIGHPRFELIRHDVTEPLLI-------EVD 99 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~-----~~~~~~~~~~~~~d~~~~~~~-------~~D 99 (228)
|.|||||||||||++|+++|++.| ++|++++|..... ..... ......+++++++|++|.... ++|
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence 789999999999999999999999 9999999954321 11111 112235799999999986532 689
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
+|||+|+.........++...+++|+.++.+|+++|++.++ |||++||..+||.....+++|+ ++..|.+.
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~ 155 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 155 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCCh
Confidence 99999998877777788889999999999999999998764 6999999999998877889998 67788899
Q ss_pred HHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
|+.+|..+|.+++.++++++++++++||+++|||+....
T Consensus 156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~ 194 (357)
T d1db3a_ 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGET 194 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcC
Confidence 999999999999999999999999999999999976543
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.2e-32 Score=223.79 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=158.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCe------EEEEcCCCCC-CchhhhhhcCCCceEEEeccCCCcc-----cCCccE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNE------VIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ 100 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~------V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~ 100 (228)
|||||||||||||++++++|+++| +. |+.+++.... .............++++++|..+.. ...+|.
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g-~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~ 79 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGA-YPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA 79 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTS-CTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccce
Confidence 789999999999999999999998 54 5555543222 2223333444568999999998753 347999
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHh
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG 179 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~s 179 (228)
|+|+|+.........++.+.++.|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..|.+.|+.+
T Consensus 80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~s 154 (322)
T d1r6da_ 80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAAS 154 (322)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHH
T ss_pred EEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHH
Confidence 9999987766666677888899999999999999999998 8999999999999888888998 788899999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHhC
Q 027129 180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR 228 (228)
Q Consensus 180 K~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~~ 228 (228)
|..+|.+++.++++++++++++||+.||||++.. .++++.+++++++
T Consensus 155 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~~ 201 (322)
T d1r6da_ 155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLD 201 (322)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc--CcHHHHHHHHHHc
Confidence 9999999999999999999999999999999876 4599999988753
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.98 E-value=1.1e-31 Score=221.47 Aligned_cols=192 Identities=27% Similarity=0.403 Sum_probs=154.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeE-EEEcCCCCC-CchhhhhhcCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEV-IVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V-~~~~r~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|||||||||||||++|+++|++.| ++| .++++.... .......+....+++++.+|+++... .++|+|||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g-~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih 79 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNT-QDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH 79 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHC-SCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence 789999999999999999999999 764 455543222 23334455556789999999998743 26999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC---------C-eEEEEccceeccCCCCCCCCCCCC-----CCCC
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---------A-RILLTSTSEVYGDPLVHPQDESYW-----GNVN 168 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~-r~i~~Ss~~~y~~~~~~~~~e~~~-----~~~~ 168 (228)
+|+...+.....++...+++|+.++.+++++|++.+ + |||++||..+||.....+..|... ....
T Consensus 80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~ 159 (361)
T d1kewa_ 80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT 159 (361)
T ss_dssp CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence 999876666667788899999999999999998753 2 799999999999776544443321 1235
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
+..|.+.|+.+|.++|.+++.++++++++++++||++||||++.. .++++.++++++
T Consensus 160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~ 216 (361)
T d1kewa_ 160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNAL 216 (361)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc--CcHHHHHHHHHH
Confidence 677889999999999999999999999999999999999998776 458999988775
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=2.9e-31 Score=217.14 Aligned_cols=192 Identities=29% Similarity=0.358 Sum_probs=161.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh---hh---cCCCceEEEeccCCCcc-----cCCc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KW---IGHPRFELIRHDVTEPL-----LIEV 98 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~---~~~~~~~~~~~d~~~~~-----~~~~ 98 (228)
..+|++||||||||||++|+++|++.| ++|++++|.......... .. .....++++.+|..+.. ...+
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~ 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence 446899999999999999999999999 999999985544433221 11 11246899999998863 3479
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHH
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~ 177 (228)
+.++|+++.........++...++.|+.++.+++++|++.++ +||++||..+||.....+.+|+ .+..|.+.|+
T Consensus 93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~ 167 (341)
T d1sb8a_ 93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYA 167 (341)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHH
T ss_pred cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcch
Confidence 999999987665555677788899999999999999999998 9999999999998888889998 7888999999
Q ss_pred HhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
.+|.++|.+++.+++.++++++++||+.|||++..+.. ..+++.++..++
T Consensus 168 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~ 219 (341)
T d1sb8a_ 168 VTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMI 219 (341)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999877643 458888887764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.5e-30 Score=212.73 Aligned_cols=190 Identities=27% Similarity=0.436 Sum_probs=153.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh--hhcCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|||||||||||||++|++.|+++| ++|++++|.......... .......++++++|+++... .++|+|||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 789999999999999999999999 999999885554443322 12234579999999998743 27999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
+|+.........++...+++|+.++.+++++|++.++ +||++||..+|+.....+..|.. ....|...|+.+|..
T Consensus 80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~ 155 (338)
T d1udca_ 80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLM 155 (338)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHH
T ss_pred CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhh
Confidence 9997765556677889999999999999999999998 89999999999877666665552 455688899999999
Q ss_pred HHHHHHHHHHH-hCCcEEEeeeccccCCCCCCC--------CccHHHHHHHHHh
Q 027129 183 AETLMFDYHRQ-HGIEIRIARIFNTYGPRMNID--------DGRVVSNFIAQAI 227 (228)
Q Consensus 183 ~e~~~~~~~~~-~~i~~~ilRp~~i~G~~~~~~--------~~~~~~~~i~~~~ 227 (228)
+|.++..+... .+++++++||+.+||++.... ...+++.++..++
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (338)
T d1udca_ 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAV 209 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHT
T ss_pred hhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHh
Confidence 99999977665 489999999999999875432 1357787776653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.97 E-value=4.3e-30 Score=210.60 Aligned_cols=193 Identities=28% Similarity=0.385 Sum_probs=147.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE--cCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV--DNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
+||+|||||||||||++|+++|++.| +.|.++ ++................+++++.+|+.+.. ....|.|+|
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g-~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~ 79 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNH-PDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVH 79 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCC-CCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence 48999999999999999999999998 765444 4322222222112223468999999998864 347999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCC---CCCC----CCCCCCCCCCCCCCChH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL---VHPQ----DESYWGNVNPIGVRSCY 176 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~---~~~~----~e~~~~~~~~~~~~~~y 176 (228)
+|+.........++.+.+++|+.++.++++++.+.+.++|++||..+||... ..+. ....+...++..|.+.|
T Consensus 80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y 159 (346)
T d1oc2a_ 80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY 159 (346)
T ss_dssp CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence 9987766555677888999999999999999999999999999999997421 1111 11112233677888999
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
+.+|.++|.+++.++++++++++++||+.+|||+.... ..+..++..+
T Consensus 160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~--~~~~~~i~~~ 207 (346)
T d1oc2a_ 160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--KFIPRQITNI 207 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc--chhHHHHHHH
Confidence 99999999999999999999999999999999987653 3666666543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.9e-30 Score=211.38 Aligned_cols=176 Identities=24% Similarity=0.284 Sum_probs=145.5
Q ss_pred CEE-EEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhh------cCCCceEEEeccCCCccc-------CC
Q 027129 33 MRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW------IGHPRFELIRHDVTEPLL-------IE 97 (228)
Q Consensus 33 ~~v-lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~------~~~~~~~~~~~d~~~~~~-------~~ 97 (228)
||| ||||||||||++|+++|++.| |+|++++|..... ......+ .....++++.+|+++... .+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 79 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK 79 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence 578 999999999999999999999 9999999964432 1111111 112468999999998643 27
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC----eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
+++++|+++.........+....+++|+.++.++++++++++. +||++||..+||.....+++|+ .+..|.
T Consensus 80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~ 154 (347)
T d1t2aa_ 80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPR 154 (347)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCC
T ss_pred cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCC
Confidence 8999999987665555667777889999999999999999774 7999999999998877888888 688888
Q ss_pred ChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
+.|+.+|.++|++++.+++.++++++++||+.+|||+....
T Consensus 155 ~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~ 195 (347)
T d1t2aa_ 155 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGAN 195 (347)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCC
Confidence 99999999999999999999999999999999999976653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=4.8e-29 Score=201.94 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=150.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-chhhhhhcCCCceEEEeccCCCcccC-------CccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi~~ 104 (228)
|+|||||||||||++|+++|+++| |+|++++|..... ...+..+....++.++.+|+.+.... .+++++|+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence 689999999999999999999999 9999999965442 23344444456799999999986432 58899999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
++.........++...++.|+.++.++++++++.+. +|++.||..+|+.......+|+ .+..|.+.|+.+|.+
T Consensus 80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~ 154 (321)
T d1rpna_ 80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLY 154 (321)
T ss_dssp CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHH
T ss_pred cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHHHH
Confidence 987666666677888999999999999999999886 6888999999988888888887 688888999999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
+|.+++.++++++++++++||+++|||.....
T Consensus 155 ~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~ 186 (321)
T d1rpna_ 155 GHWITVNYRESFGLHASSGILFNHESPLRGIE 186 (321)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTT
T ss_pred HHHHHHHHHhhcCCcEEEEEEecccCCCcccc
Confidence 99999999999999999999999999976553
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.4e-29 Score=202.39 Aligned_cols=163 Identities=22% Similarity=0.274 Sum_probs=131.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------cCCccEEEEc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL 104 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~D~vi~~ 104 (228)
.|||||||||||||++|+++|+++| +.|+++++... .|+.+.. ..++|.|+|+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-~~vi~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~v~~~ 61 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRDE-------------------LNLLDSRAVHDFFASERIDQVYLA 61 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTTT-------------------CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-CEEEEecCchh-------------------ccccCHHHHHHHHhhcCCCEEEEc
Confidence 5799999999999999999999999 88877755321 1222211 1268999999
Q ss_pred cCCCCcc-cccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHH
Q 027129 105 ACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV 182 (228)
Q Consensus 105 a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~ 182 (228)
|+..... ....+....++.|+.++.+++++|++.++ ||||+||.++||.....+++|+......+..+.+.|+.+|.+
T Consensus 62 a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~ 141 (315)
T d1e6ua_ 62 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA 141 (315)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred chhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHH
Confidence 9765432 22345667789999999999999999998 899999999999888888888755544555556789999999
Q ss_pred HHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 183 ~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
+|+.++.++++++++++++||++||||++...
T Consensus 142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~ 173 (315)
T d1e6ua_ 142 GIKLCESYNRQYGRDYRSVMPTNLYGPHDNFH 173 (315)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEESTTCCCC
T ss_pred HHHHHHHHHHHhCCCEEEEeeccEECCCCCCC
Confidence 99999999999999999999999999987653
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.3e-29 Score=203.67 Aligned_cols=188 Identities=26% Similarity=0.391 Sum_probs=150.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh--hhhcCCCceEEEeccCCCccc-------CCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL--RKWIGHPRFELIRHDVTEPLL-------IEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~ 103 (228)
|.|||||||||||++|+++|+++| ++|+++++......... .......+++++++|+.+... .++|+|||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih 80 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 80 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 569999999999999999999999 99999987544433322 122234578999999998643 27999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCC----CCCCCCCCCCCCCCCCCChHHH
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGVRSCYDE 178 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~----~~~~e~~~~~~~~~~~~~~y~~ 178 (228)
+|+...+.....++.....+|+.++.+++++|++.++ |||++||..+||.... .+++|+ .+..|.+.|+.
T Consensus 81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~ 155 (347)
T d1z45a2 81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGH 155 (347)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHH
T ss_pred ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHh
Confidence 9998766666667788889999999999999999998 8999999999986654 334444 67788899999
Q ss_pred hHHHHHHHHHHHHHH--hCCcEEEeeeccccCCCCCC--------CCccHHHHHHHHH
Q 027129 179 GKRVAETLMFDYHRQ--HGIEIRIARIFNTYGPRMNI--------DDGRVVSNFIAQA 226 (228)
Q Consensus 179 sK~~~e~~~~~~~~~--~~i~~~ilRp~~i~G~~~~~--------~~~~~~~~~i~~~ 226 (228)
+|.++|++++.+.+. ++++++++||+.+||+.... ..+.+++.++..+
T Consensus 156 sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 213 (347)
T d1z45a2 156 TKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVA 213 (347)
T ss_dssp HHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHH
Confidence 999999999998754 58999999999999975432 1234777776654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.7e-28 Score=200.58 Aligned_cols=191 Identities=27% Similarity=0.475 Sum_probs=153.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~a~ 106 (228)
|||||||||||||++|+++|+++|.++|+++++.. ..........+++++++|+++.. ..++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~----~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS----DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC----GGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC----cchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 78999999999999999999999845899998832 22333444578999999998752 236999999999
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCC--CCCCCCCCChHHHhHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAE 184 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~--~~~~~~~~~~y~~sK~~~e 184 (228)
.........++...++.|+.++.++++++.+.++++++.||..+|+........|.... ......|...|+.+|.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 87766566777888999999999999999999998899999999998776666554221 1234456788999999999
Q ss_pred HHHHHHHHHhCCcEEEeeeccccCCCCCCCC------ccHHHHHHHHHh
Q 027129 185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDD------GRVVSNFIAQAI 227 (228)
Q Consensus 185 ~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~------~~~~~~~i~~~~ 227 (228)
++++.+++.++++++++||+.+||+...... ...++.++.+++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLV 205 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHH
Confidence 9999999999999999999999999755421 346777777654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.96 E-value=2.3e-28 Score=201.30 Aligned_cols=182 Identities=24% Similarity=0.296 Sum_probs=145.7
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccE
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ 100 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~ 100 (228)
+..+-++|||||||||||||++|+++|+++| ++|+++++......... ....++..+|+.+.. ..++|.
T Consensus 9 ~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~ 82 (363)
T d2c5aa1 9 QYWPSENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDH 82 (363)
T ss_dssp CSCTTSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred CcCCCCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccchhhh-----cccCcEEEeechhHHHHHHHhhcCCe
Confidence 3344458999999999999999999999999 99999987544322111 124567777877652 347999
Q ss_pred EEEccCCCCcccc-cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCC--CCCCCCCCCChH
Q 027129 101 IYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYW--GNVNPIGVRSCY 176 (228)
Q Consensus 101 vi~~a~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~--~~~~~~~~~~~y 176 (228)
|||+|+....... ...+......|+.++.++++++++.++ |||++||..+|+.....+.+|... ....+..|.+.|
T Consensus 83 Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y 162 (363)
T d2c5aa1 83 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF 162 (363)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred EeecccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHH
Confidence 9999976554333 356677889999999999999999998 899999999999777666655422 233567788999
Q ss_pred HHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
+.+|..+|++++.+.++++++++++||+++||+++..
T Consensus 163 g~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~ 199 (363)
T d2c5aa1 163 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 199 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcc
Confidence 9999999999999999999999999999999998764
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.95 E-value=6.8e-27 Score=193.85 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=148.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCC--------chhhhh-h---------cCCCceEEEeccCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGS--------KDNLRK-W---------IGHPRFELIRHDVTE 92 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~--------~~~~~~-~---------~~~~~~~~~~~d~~~ 92 (228)
.|||||||||||||++|+++|+++ | ++|+++++..... .+.... + .....+.++.+|++|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 589999999999999999999974 6 9999997522111 011000 0 112357899999998
Q ss_pred ccc--------CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCC--CC
Q 027129 93 PLL--------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQ--DE 161 (228)
Q Consensus 93 ~~~--------~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~--~e 161 (228)
... .++|+|||+|+..........+...++.|+.++.++++++++.++ +++++|+..+|+....... .+
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 632 367999999998776666667778889999999999999999998 8999999998875543321 11
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCCC-------ccHHHHHHHHHh
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-------GRVVSNFIAQAI 227 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~-------~~~~~~~i~~~~ 227 (228)
.......+..|.+.|+.+|...|.+++.+.+.++++++++||+.+|||++.... ..++|.++.+++
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~ 233 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVM 233 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHH
Confidence 122233677889999999999999999999999999999999999999887532 346777766543
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=4.7e-27 Score=191.41 Aligned_cols=176 Identities=23% Similarity=0.289 Sum_probs=140.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC-Cchhhhhh------cCCCceEEEeccCCCccc-------CC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKW------IGHPRFELIRHDVTEPLL-------IE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~------~~~~~~~~~~~d~~~~~~-------~~ 97 (228)
.|++||||||||||++|+++|+++| |+|++++|.... ..+....+ .....+.+..+|+.+... .+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~ 79 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK 79 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence 3799999999999999999999999 999999995432 11111111 223568899999988643 37
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-----C-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
+|+|||+|+.........++...+..|+.++.++++++++.. . ++++.||..+|+.. ..+.+|+ .+..
T Consensus 80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~-----~~~~ 153 (339)
T d1n7ha_ 80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSET-----TPFH 153 (339)
T ss_dssp CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTT-----SCCC
T ss_pred cchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCC-----CCCC
Confidence 899999999766555557778889999999999999987642 2 67778888777654 4567777 6788
Q ss_pred CCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID 214 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~ 214 (228)
|.+.|+.+|..+|+++..+++.++++++++||++||||.....
T Consensus 154 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~ 196 (339)
T d1n7ha_ 154 PRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGEN 196 (339)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTT
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCC
Confidence 9999999999999999999999999999999999999986653
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.95 E-value=1.5e-26 Score=189.52 Aligned_cols=192 Identities=22% Similarity=0.261 Sum_probs=151.9
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccE
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQ 100 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~ 100 (228)
|.+ +|||||||||||||++++++|++.| ++|++++|.................++++.+|++|.... .+|+
T Consensus 5 ~~~-~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 5 FWQ-GKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp HHT-TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred hhC-CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 344 7999999999999999999999999 999999997666555444333345799999999986432 6899
Q ss_pred EEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCC-CCCCCCCCCCCCCCCCCChHH
Q 027129 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYD 177 (228)
Q Consensus 101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~-~~~~e~~~~~~~~~~~~~~y~ 177 (228)
|+|+|+..........+...+.+|+.++.++++++++.+. .+++.|+..+|..... .+.+|+ .+..|.+.|+
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~ 157 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYS 157 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCccc
Confidence 9999998776666677888999999999999999999875 4666666655544433 344454 5677788999
Q ss_pred HhHHHHHHHHHHHHH---------HhCCcEEEeeeccccCCCCCCCCccHHHHHHHHHh
Q 027129 178 EGKRVAETLMFDYHR---------QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI 227 (228)
Q Consensus 178 ~sK~~~e~~~~~~~~---------~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~~ 227 (228)
.+|...|..+..++. .+++.++++||+++|||++... .++++.+++.+.
T Consensus 158 ~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~-~~~i~~~~~~~~ 215 (356)
T d1rkxa_ 158 NSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFE 215 (356)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-SCHHHHHHHHHH
T ss_pred cccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh-hHHHHHHHHHHh
Confidence 999999999988765 3478899999999999987654 468888877654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.94 E-value=6.7e-27 Score=194.47 Aligned_cols=180 Identities=27% Similarity=0.314 Sum_probs=134.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC-------------CCCC---chhhh--hhcCCCceEEEeccCCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-------------FTGS---KDNLR--KWIGHPRFELIRHDVTEP 93 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~-------------~~~~---~~~~~--~~~~~~~~~~~~~d~~~~ 93 (228)
||||||||||||||++|+++|++.| |+|++++.. .... .+... .......++++.+|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 6999999999999999999999999 999998621 0001 01111 111235789999999986
Q ss_pred ccC-------CccEEEEccCCCCcccccCC---chhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCC
Q 027129 94 LLI-------EVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 94 ~~~-------~~D~vi~~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e 161 (228)
... ++|+|||+|+.........+ +...++.|+.++.+++++|++.+. ++++.||..+|+... .+..|
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~-~~~~~ 158 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEE 158 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCS
T ss_pred HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc-ccccc
Confidence 432 68999999987665544444 335678999999999999999886 578888888887443 22222
Q ss_pred CCC---------CCCCCCCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 162 SYW---------GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 162 ~~~---------~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
... ....+..|.+.|+.+|..+|.+++.++++++++++++||++||||+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~ 219 (393)
T d1i24a_ 159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDE 219 (393)
T ss_dssp SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTT
T ss_pred ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccc
Confidence 211 0113567778899999999999999999999999999999999998653
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.1e-26 Score=186.59 Aligned_cols=189 Identities=25% Similarity=0.372 Sum_probs=147.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC------chhhh--hhcCCCceEEEeccCCCccc-------CC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------KDNLR--KWIGHPRFELIRHDVTEPLL-------IE 97 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------~~~~~--~~~~~~~~~~~~~d~~~~~~-------~~ 97 (228)
|||||||||||||++|+++|++.| ++|+++++..... .+... .......+.++++|++|... ..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence 689999999999999999999999 9999997632221 11111 12234678999999998643 36
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChH
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y 176 (228)
+++++|+|+.........++.+.++.|+.++.++++++++.++ +|+++||..+|+........+.. ....+.+.|
T Consensus 82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y 157 (346)
T d1ek6a_ 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPY 157 (346)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHH
T ss_pred cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChH
Confidence 8899999998776666667888899999999999999999998 89999999999876554433331 344566789
Q ss_pred HHhHHHHHHHHHHHHHH-hCCcEEEeeeccccCCCCCCC--------CccHHHHHHHHH
Q 027129 177 DEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPRMNID--------DGRVVSNFIAQA 226 (228)
Q Consensus 177 ~~sK~~~e~~~~~~~~~-~~i~~~ilRp~~i~G~~~~~~--------~~~~~~~~i~~~ 226 (228)
+.+|..+|..++.+++. .+++.+++||+.+||+..... ...+++.++..+
T Consensus 158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (346)
T d1ek6a_ 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVA 216 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHH
Confidence 99999999999998775 489999999999999875421 234666666543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.93 E-value=1.7e-24 Score=176.78 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=140.3
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh---hcC-CCceEEEeccCCCc-----ccCCc
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIG-HPRFELIRHDVTEP-----LLIEV 98 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~-~~~~~~~~~d~~~~-----~~~~~ 98 (228)
+++.+|+||||||+||||++|+++|+++| ++|++++|+..+. ..+.. ... ......+.+|+.+. .+.++
T Consensus 7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (342)
T d1y1pa1 7 VLPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhH-HHHHHhhhccccccccEEEeccccchhhhhhhcccc
Confidence 46779999999999999999999999999 9999999943221 11111 111 22345577888765 33479
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcC-C-eEEEEccceeccCCC----CCCCCCCCC--------
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----VHPQDESYW-------- 164 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-r~i~~Ss~~~y~~~~----~~~~~e~~~-------- 164 (228)
|.|+|+++... ...++...+..|+.++.+++++|++.+ + +||++||..++.... ....+|..|
T Consensus 85 ~~v~~~a~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 161 (342)
T d1y1pa1 85 AGVAHIASVVS---FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161 (342)
T ss_dssp SEEEECCCCCS---CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHH
T ss_pred hhhhhhccccc---ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccc
Confidence 99999998543 345566778899999999999999875 4 899999976533211 112233321
Q ss_pred ---CCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCCCCCCCC-ccHHHHHHHHHh
Q 027129 165 ---GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAI 227 (228)
Q Consensus 165 ---~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~~~~~~~-~~~~~~~i~~~~ 227 (228)
....+..|.+.|+.+|..+|++++.+++++ +++++++||+.+|||...+.. ...+..++.+++
T Consensus 162 ~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~ 230 (342)
T d1y1pa1 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLF 230 (342)
T ss_dssp HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHH
T ss_pred ccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHH
Confidence 122456677789999999999999998876 477889999999999755432 346666666554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.93 E-value=9e-25 Score=177.28 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=145.4
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc-hhhhhhcCCCceEEEeccCCCccc-------CCccEEEEcc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 105 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~~a 105 (228)
||||||||||||++|+++|+++| ++|+++++...... .....+....+++++.+|+++... .++|+|||+|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 79999999999999999999999 99999986433332 233344455789999999998643 2689999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc-eeccCCCCCCCCCC-----------CCCCCCCCCC
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLVHPQDES-----------YWGNVNPIGV 172 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~-~~y~~~~~~~~~e~-----------~~~~~~~~~~ 172 (228)
+.........++...+++|+.++.++++++.+.++ ++|+.||. .+|+.....+..+. ......+..+
T Consensus 81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
T d1orra_ 81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF 160 (338)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence 98766555567788999999999999999999987 55555554 44443332221111 1112345667
Q ss_pred CChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCCC-CccHHHHHHHHHh
Q 027129 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAI 227 (228)
Q Consensus 173 ~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~~-~~~~~~~~i~~~~ 227 (228)
.+.|+.+|...|.++..+...++....++|++.+|++..... ....++.++..++
T Consensus 161 ~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (338)
T d1orra_ 161 HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAV 216 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHH
Confidence 789999999999999999999999999999999998765443 3457777776653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.7e-25 Score=169.04 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=121.1
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEE
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQI 101 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~v 101 (228)
+.+++|+|+|||||||||++++++|+++|. ++|++++|++....... ...++...+|+.+. .+.++|++
T Consensus 10 ~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred hCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccccc
Confidence 445679999999999999999999999984 48999999655433222 13566777777654 34589999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
||++|.. ....+.....+.|+.++.+++++|++.++ +||++||..+++. +.+.|+.+|
T Consensus 85 i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~~K 143 (232)
T d2bkaa1 85 FCCLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVK 143 (232)
T ss_dssp EECCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHH
T ss_pred ccccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHHHH
Confidence 9999743 22334556788999999999999999998 7999999876532 225699999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEeeeccccCCCCCC
Q 027129 181 RVAETLMFDYHRQHGIE-IRIARIFNTYGPRMNI 213 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~-~~ilRp~~i~G~~~~~ 213 (228)
..+|+.++. .+++ ++|+||+.+||++...
T Consensus 144 ~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~ 173 (232)
T d2bkaa1 144 GEVEAKVEE----LKFDRYSVFRPGVLLCDRQES 173 (232)
T ss_dssp HHHHHHHHT----TCCSEEEEEECCEEECTTGGG
T ss_pred HHhhhcccc----ccccceEEecCceeecCCCcC
Confidence 999998755 3554 8999999999987664
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.90 E-value=1.8e-23 Score=165.47 Aligned_cols=159 Identities=26% Similarity=0.283 Sum_probs=130.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------cCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~D~vi~~a 105 (228)
|||||||||||||++|+++|.++| ++|++++|... |+.+.. ..++|+|||+|
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~~--------------------D~~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKN-VEVIPTDVQDL--------------------DITNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTTC--------------------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEeechhc--------------------cCCCHHHHHHHHHHcCCCEEEeec
Confidence 789999999999999999999999 99999988421 333321 12689999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
+..........+......|......+.+.+...+.++++.||..+|+.....+..|. ++..+...|+.+|...|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~~~~k~~~e~ 135 (281)
T d1vl0a_ 61 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGEN 135 (281)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhhhhhhhHHHH
Confidence 877665666667788889999999999999988888999999999998888888888 677888999999999998
Q ss_pred HHHHHHHHhCCcEEEeeeccccCCCCCCCCccHHHHHHHHH
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA 226 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~~~~~~~~~~~~~~i~~~ 226 (228)
.++. ++.+++++||+.+||++.+ ++..++..+
T Consensus 136 ~~~~----~~~~~~i~R~~~vyG~~~~-----~~~~~~~~~ 167 (281)
T d1vl0a_ 136 FVKA----LNPKYYIVRTAWLYGDGNN-----FVKTMINLG 167 (281)
T ss_dssp HHHH----HCSSEEEEEECSEESSSSC-----HHHHHHHHH
T ss_pred HHHH----hCCCccccceeEEeCCCcc-----cccchhhhh
Confidence 7654 4789999999999999754 455555543
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.6e-22 Score=161.48 Aligned_cols=184 Identities=22% Similarity=0.294 Sum_probs=135.9
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEe-ccCCC-----cccCCccEEEEccCCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTE-----PLLIEVDQIYHLACPA 108 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~-----~~~~~~D~vi~~a~~~ 108 (228)
||||||+||||++|+++|+++|.+.|+++++..... ...........+... .++.+ .....+++|+|+|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG--GGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc--hhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 899999999999999999999944798887533222 111222222233332 22221 2345789999999754
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHH
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~ 188 (228)
.. ...+.......|+.++.+++++++..++++++.||..+|.........+. .+..+.+.|+.+|..+|.+++
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K~~~e~~~~ 152 (307)
T d1eq2a_ 80 ST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (307)
T ss_dssp CT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred cc--cccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccchhhhhcc
Confidence 32 23455667788999999999999999999999999988877766665555 566778899999999999999
Q ss_pred HHHHHhCCcEEEeeeccccCCCCCCCC--ccHHHHHHHHHh
Q 027129 189 DYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAI 227 (228)
Q Consensus 189 ~~~~~~~i~~~ilRp~~i~G~~~~~~~--~~~~~~~i~~~~ 227 (228)
.++.+++++++++||+.+|||++.... +.+++.++.++.
T Consensus 153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~ 193 (307)
T d1eq2a_ 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLN 193 (307)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHH
T ss_pred ccccccccccccccceeEeeccccccccccccccccccccc
Confidence 999999999999999999999876432 346666666543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-23 Score=158.19 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=116.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~~ 104 (228)
+.||||+||||||+||++++++|+++| ++|+++.|+..+..+. ....++++.+|+++.. +.++|+|||+
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~ 74 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEE
Confidence 458999999999999999999999999 9999999954433221 2356899999999864 4589999999
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
+|..... .....+..++.+++++++++++ |||++||.++|.+... .......|...|..+
T Consensus 75 ~g~~~~~-------~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~------------~~~~~~~~~~~~~~~ 135 (205)
T d1hdoa_ 75 LGTRNDL-------SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK------------VPPRLQAVTDDHIRM 135 (205)
T ss_dssp CCCTTCC-------SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC------------SCGGGHHHHHHHHHH
T ss_pred eccCCch-------hhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc------------ccccccccchHHHHH
Confidence 9753211 1124677889999999999998 8999999988764321 122234578888888
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
|++++ +.+++|+++||+.+++.
T Consensus 136 e~~l~----~~~~~~tiirp~~~~~~ 157 (205)
T d1hdoa_ 136 HKVLR----ESGLKYVAVMPPHIGDQ 157 (205)
T ss_dssp HHHHH----HTCSEEEEECCSEEECC
T ss_pred HHHHH----hcCCceEEEecceecCC
Confidence 87764 45899999999999864
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.89 E-value=1.4e-22 Score=161.27 Aligned_cols=150 Identities=22% Similarity=0.180 Sum_probs=120.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~D~vi~~a 105 (228)
|||||||||||||++|+++|.+.| + ++.+.+.... ..+|+++... .++|+|||+|
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g-~-~v~~~~~~~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~A 62 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVG-N-LIALDVHSKE----------------FCGDFSNPKGVAETVRKLRPDVIVNAA 62 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTS-E-EEEECTTCSS----------------SCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-C-EEEEECCCcc----------------ccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence 789999999999999999999988 5 5555552211 2345555321 2689999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
|.........++...++.|+.++.++++++++.+++++++||..+|+.....+.+|. .+..|.+.|+.+|..+|.
T Consensus 63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y~~~k~~~e~ 137 (298)
T d1n2sa_ 63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEK 137 (298)
T ss_dssp CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHH
T ss_pred ccccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchHhhhhhhhhh
Confidence 987766677888889999999999999999998889999999999998888888888 677888999999999999
Q ss_pred HHHHHHHHhCCcEEEeeeccccCC
Q 027129 186 LMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 186 ~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
.++.. .....++|++.+|+.
T Consensus 138 ~~~~~----~~~~~~~~~~~~~~~ 157 (298)
T d1n2sa_ 138 ALQDN----CPKHLIFRTSWVYAG 157 (298)
T ss_dssp HHHHH----CSSEEEEEECSEECS
T ss_pred hHHhh----hcccccccccceeec
Confidence 87664 345667777766643
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=1.9e-22 Score=153.80 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=111.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC--eEEEEcCCCCCCchhhhhhcCCCceEEEeccCC---CcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT---EPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~D~vi~~a~ 106 (228)
.|+|||||||||||++++++|++++ + +|+++.|+..... ..++....|+. +.....+|+|||++|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~-~~~~v~~~~r~~~~~~---------~~~~~~~~d~~~~~~~~~~~~d~vi~~~g 71 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEP-TLAKVIAPARKALAEH---------PRLDNPVGPLAELLPQLDGSIDTAFCCLG 71 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCT-TCCEEECCBSSCCCCC---------TTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEEEeCCchhhc---------ccccccccchhhhhhccccchheeeeeee
Confidence 4899999999999999999999999 5 6777777433222 23333333332 223446899999987
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHH
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~ 185 (228)
... ........+.+.|+.++.+++++|++.++ +|+++||.++++. +.+.|..+|..+|+
T Consensus 72 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~ 131 (212)
T d2a35a1 72 TTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQ 131 (212)
T ss_dssp CCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHH
T ss_pred eec--cccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhh
Confidence 532 22344567889999999999999999998 8999999877642 22569999999998
Q ss_pred HHHHHHHHhCC-cEEEeeeccccCCCCCC
Q 027129 186 LMFDYHRQHGI-EIRIARIFNTYGPRMNI 213 (228)
Q Consensus 186 ~~~~~~~~~~i-~~~ilRp~~i~G~~~~~ 213 (228)
.+++ .++ +++|+||+.|||+.+..
T Consensus 132 ~l~~----~~~~~~~I~Rp~~v~G~~~~~ 156 (212)
T d2a35a1 132 ALQE----QGWPQLTIARPSLLFGPREEF 156 (212)
T ss_dssp HHTT----SCCSEEEEEECCSEESTTSCE
T ss_pred hccc----cccccceeeCCcceeCCcccc
Confidence 8754 355 59999999999997653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=1.2e-19 Score=140.87 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=123.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++ ...+.++++|++++.. .++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 48999999999999999999999999 99999999433222222222 2367889999998642 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ +++.+.+++|+.++..+.+.+ ++.+. +||++||...+. +
T Consensus 82 dilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----------------~ 145 (244)
T d1nffa_ 82 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA----------------G 145 (244)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred eEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc----------------c
Confidence 9999999986554333 335678899999998888754 33444 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +||+++.|-||.+..+.
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~ 189 (244)
T d1nffa_ 146 TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM 189 (244)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGG
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChh
Confidence 233467999999999999999876 48999999999987654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=5.5e-19 Score=137.02 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=124.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+| +.+.+++..+......+.+|+++... .++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r----~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 78 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDI----EEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRL 78 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES----CHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEEC----CHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 48999999999999999999999999 99999999 44445444444567889999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||...+.... +++...+++|+.++..+.+++.+ .+. +++++||....+
T Consensus 79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~----------------- 141 (242)
T d1ulsa_ 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG----------------- 141 (242)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC-----------------
T ss_pred eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC-----------------
Confidence 9999999986554332 34567889999999999887643 233 577777754322
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~~ 213 (228)
......|+.+|...+.+.+.++.+ +||+++.|.||.+-.+....
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~ 188 (242)
T d1ulsa_ 142 NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK 188 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc
Confidence 223367999999999999999876 48999999999998765443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.81 E-value=1.4e-19 Score=141.21 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=123.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+..+..+..+++ ..++.++++|+++... .++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 48999999999999999999999999 99999999433222222222 2468899999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ +++...+++|+.++..+.+++ ++.+. +||++||...+. +
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~----------------~ 144 (254)
T d1hdca_ 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------------G 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------C
T ss_pred cEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------------c
Confidence 9999999986654333 334577899999998888865 34444 999999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.+ +||+++.|.||.+..+
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~ 187 (254)
T d1hdca_ 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP 187 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc
Confidence 223467999999999999999876 4899999999998653
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=2.3e-19 Score=138.75 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=116.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+.... ..+..+++|+++... .++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 74 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPV 74 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 48999999999999999999999999 9999999954322 245678899998642 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++++..+++|+.++..+.+++ ++.+. +||++||...+. +
T Consensus 75 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~----------------~ 138 (237)
T d1uzma1 75 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW----------------G 138 (237)
T ss_dssp SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-------------------
T ss_pred eEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc----------------C
Confidence 9999999976543322 345677899999998877643 44555 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +||+++.|.||.+..+
T Consensus 139 ~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~ 181 (237)
T d1uzma1 139 IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTD 181 (237)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCCh
Confidence 223467999999999999998876 4899999999999764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9.7e-20 Score=141.39 Aligned_cols=160 Identities=18% Similarity=0.086 Sum_probs=122.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+.....+...++ ..+...+.+|+++... .++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 48999999999999999999999999 99999999432222211222 2367888999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ +++...+++|+.++..+.+++ ++.+. +||++||...+. +
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~----------------~ 143 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM----------------G 143 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------C
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------------C
Confidence 9999999876554333 334677899999999888865 34444 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.+ +||+++.|.||.+-.+
T Consensus 144 ~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~ 186 (243)
T d1q7ba_ 144 NGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETD 186 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEech
Confidence 223367999999999999999876 4899999999998654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.80 E-value=2.2e-19 Score=140.78 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=124.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hc--CCCceEEEeccCCCccc-----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI--GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~--~~~~~~~~~~d~~~~~~----------- 95 (228)
.++|+++||||++.||++++++|+++| ++|++.+|+.....+.... +. ...++.++++|+++...
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQG-ADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999 9999999953322222221 11 13468889999998632
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ +++...+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~------------- 147 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV------------- 147 (260)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-------------
Confidence 3799999999987654333 335678899999998877754 44454 999999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|-.+
T Consensus 148 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 191 (260)
T d1x1ta1 148 ---ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTP 191 (260)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-
T ss_pred ---ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCCh
Confidence 2223367999999999999999876 4899999999998665
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.80 E-value=4.9e-19 Score=137.74 Aligned_cols=162 Identities=18% Similarity=0.128 Sum_probs=122.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||+++++.|+++| ++|++.+|+.....+...+. ...++..+++|+++... .++
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i 81 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEG-ADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC 81 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHHH-cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 38999999999999999999999999 99999998543222111111 23468889999998742 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ ++++..+++|+.++..+.+++ ++.+. ++|++||..... +
T Consensus 82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------------~ 145 (247)
T d2ew8a1 82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL----------------K 145 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------C
T ss_pred CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------------c
Confidence 9999999986544332 345678899999999888865 44454 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
......|+.+|...+.+.+.++.+ +||+++.|.||.|..+.
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~ 189 (247)
T d2ew8a1 146 IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTAT 189 (247)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----
T ss_pred CcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcc
Confidence 233467999999999999999876 48999999999987653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.80 E-value=2.4e-19 Score=139.79 Aligned_cols=167 Identities=14% Similarity=0.028 Sum_probs=124.6
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------c
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~ 95 (228)
..++|+++||||++.||++++++|+++| ++|++.+|+.....+...++.. ..++..+++|+++.. +
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4558999999999999999999999999 9999999943322222222222 246888999999863 2
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
.++|++||+||........ +++...+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~-------------- 151 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------------- 151 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC--------------
Confidence 3799999999876554333 345677899999998887754 44454 999999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.+..+...
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~ 198 (251)
T d2c07a1 152 --GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTD 198 (251)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccc
Confidence 2223357999999999999999876 4899999999999876533
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.80 E-value=2.3e-19 Score=139.91 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=123.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+.....+..+.+....++.++++|+++... .++
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 83 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence 38999999999999999999999999 99999999533322222333334578899999998742 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC--CeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ +++...+++|+.++..+.+++. +.+ .++|++||...+.
T Consensus 84 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~---------------- 147 (251)
T d1zk4a1 84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---------------- 147 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS----------------
T ss_pred eEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec----------------
Confidence 9999999987654333 2345678999999999888753 333 2789999986431
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 148 ~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~ 193 (251)
T d1zk4a1 148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTP 193 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCH
T ss_pred cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCCh
Confidence 2222367999999999999987654 4799999999998654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-18 Score=134.90 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=122.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc--------cCCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL--------LIEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~--------~~~~D~ 100 (228)
.++|+++||||++.||++++++|+++| ++|++.+|+ .+.+.+.. +...+..+..|+++.. +.++|+
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~----~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRT----QADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECC----HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 458999999999999999999999999 999999994 33333222 1245788899999863 347999
Q ss_pred EEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH-----cCC-eEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 101 IYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 101 vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~-----~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
+||+||........ ++++..+++|+.++..+.+++.+ .+. ++|++||...+. +.
T Consensus 80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~ 143 (244)
T d1pr9a_ 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AV 143 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CC
T ss_pred EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------cc
Confidence 99999986544332 33567789999999888775432 233 899999986542 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.....|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 144 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~ 185 (244)
T d1pr9a_ 144 TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTS 185 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcCh
Confidence 23467999999999999999876 4899999999998765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=4.8e-19 Score=137.80 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=121.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||+++++.|+++| ++|++.+|+... .+..+. ....++++|+++... .++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-~~V~~~~~~~~~-~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEG-KEVAEA----IGGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSTTH-HHHHHH----HTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHH-HHHHHH----cCCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999999999999 999999995332 222221 245678899998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||...+.... ++++..+++|+.++..+.+++. +.+. +||++||...+. +
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------------~ 141 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------A 141 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------B
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------------c
Confidence 9999999986554332 3356788999999998888764 3444 899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ +||+++.|.||.+-.+
T Consensus 142 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~ 184 (248)
T d2d1ya1 142 EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE 184 (248)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCc
Confidence 233467999999999999999876 4899999999998654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=6.2e-19 Score=137.41 Aligned_cols=166 Identities=17% Similarity=0.087 Sum_probs=124.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
..++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++.. ..++..+++|++++..
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999 9999999954333222222221 2467888999998632
Q ss_pred -CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ ++++..+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~------------- 147 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE------------- 147 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC-------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc-------------
Confidence 3799999999976543322 3456778999999998888754 3343 899999864321
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.+......|+.+|...+.+.+.++.+ +||+++.|.||.+-.+.
T Consensus 148 --~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~ 193 (251)
T d1vl8a_ 148 --VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKM 193 (251)
T ss_dssp --CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTT
T ss_pred --ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHH
Confidence 11222357999999999999999876 48999999999997654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.80 E-value=4.6e-19 Score=138.59 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=123.1
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||+++++.|+++| ++|++.+|+.....+...++ ..++..+.+|++++.. .++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 48999999999999999999999999 99999999433222222222 2467889999998742 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
|++||+||........ ++++..+++|+.++..+.+++. +.+ . +||++||...+.
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------------- 144 (256)
T d1k2wa_ 81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---------------- 144 (256)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc----------------
Confidence 9999999976543322 3356778999999988887532 222 3 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.+-.+.
T Consensus 145 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~ 189 (256)
T d1k2wa_ 145 GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH 189 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT
T ss_pred ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh
Confidence 2233467999999999999999876 48999999999887663
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=4.9e-19 Score=138.30 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=124.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~ 96 (228)
.++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++.. ..++..+++|++++.. .
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 358999999999999999999999999 9999999943322222222222 2468889999998632 3
Q ss_pred CccEEEEccCCCCccccc---CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||.......+ ++++..+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~---------------- 151 (255)
T d1fmca_ 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------- 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc----------------
Confidence 799999999976654333 334577899999998888754 33444 899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|-||.|..+
T Consensus 152 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 195 (255)
T d1fmca_ 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTD 195 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSH
T ss_pred cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcCh
Confidence 2233467999999999999999876 4899999999998664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.79 E-value=5.2e-19 Score=138.50 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=124.6
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------ 94 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------ 94 (228)
|..++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++.. ...+..+.+|+++..
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999999999 9999999943332222222222 246778899999863
Q ss_pred cC-CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 95 LI-EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 95 ~~-~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
+. ++|++||+||........ ++++..+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 150 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------------ 150 (259)
T ss_dssp TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------------
T ss_pred hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc------------
Confidence 22 589999999976544332 3356788999999988887653 3444 899999986432
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 151 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~ 194 (259)
T d2ae2a_ 151 ----AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATS 194 (259)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSH
T ss_pred ----ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCH
Confidence 2223467999999999999999876 4899999999998654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.79 E-value=6.9e-19 Score=137.70 Aligned_cols=162 Identities=18% Similarity=0.141 Sum_probs=122.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||++.||++++++|+++| ++|++.+|+..+..+....+ ....++..+++|+++...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999 99999999433222222221 223468889999998743
Q ss_pred CCccEEEEccCCCCccc-c----cCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIF-Y----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~-~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||...+.. . .++++..+++|+.++..+.+++. +.+. +||++||...+.
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------- 148 (258)
T d1iy8a_ 82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------- 148 (258)
T ss_dssp SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc-------------
Confidence 37999999999754321 2 23456788999999999988653 3333 899999986542
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.+..+
T Consensus 149 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~ 192 (258)
T d1iy8a_ 149 ---GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTP 192 (258)
T ss_dssp ---BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCH
Confidence 2223467999999999999999876 4899999999998654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.79 E-value=4.1e-19 Score=139.00 Aligned_cols=162 Identities=17% Similarity=0.071 Sum_probs=123.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|.+|||||++.||++++++|+++| ++|++.+|+..+..+...++.. ..++..+++|+++... .+
T Consensus 1 DgKValITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999 9999999943322222222221 2468889999998732 37
Q ss_pred ccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH------cCC-eEEEEccceeccCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~------~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+|++||+||........ ++++..+++|+.++..+.+++.. .+. ++|++||...+.
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~-------------- 145 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-------------- 145 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS--------------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc--------------
Confidence 99999999986544332 34567889999999999997643 233 799999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ ||+++.|.||.|-.+
T Consensus 146 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 189 (257)
T d2rhca1 146 --GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETP 189 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSH
T ss_pred --ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCH
Confidence 22233679999999999999998874 799999999998543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=1.4e-18 Score=133.66 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=110.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCe--EEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-----cCCccEEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNE--VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH 103 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi~ 103 (228)
+|++|||||||||||++++++|+++| +. |+.+.|+ .+....+ ...++++.+|.++.. +.++|.|||
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g-~~v~v~~~~R~----~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 74 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGS-DKFVAKGLVRS----AQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVI 74 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTT-TTCEEEEEESC----HHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CcEEEEEEcCC----HHHHHhc--cCCcEEEEeeeccccccccccccceeeEE
Confidence 58999999999999999999999998 54 6666672 3333222 236788899988863 347999999
Q ss_pred ccCCCCcccc-------------cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 104 LACPASPIFY-------------KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 104 ~a~~~~~~~~-------------~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+++....... ........++|+.++++++..+..... ++.+.|+...+..... ..
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~ 143 (252)
T d2q46a1 75 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LN 143 (252)
T ss_dssp CCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GG
T ss_pred EEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------cc
Confidence 9986542211 122345668899999999999988777 7788887655432110 01
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~~ 213 (228)
......|...+... ..+..+.+++++++||+.+||+....
T Consensus 144 ~~~~~~~~~~~~~~----~~~~~~~~~~~~ilRp~~v~g~~~~~ 183 (252)
T d2q46a1 144 KLGNGNILVWKRKA----EQYLADSGTPYTIIRAGGLLDKEGGV 183 (252)
T ss_dssp GGGGCCHHHHHHHH----HHHHHHSSSCEEEEEECEEECSCTTS
T ss_pred cccccchhhhhhhh----hhhhhcccccceeecceEEECCCcch
Confidence 11112344444433 34445679999999999999997654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.79 E-value=1.5e-18 Score=136.63 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=123.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++.+|+.....+...++.....+.++.+|+++... .++
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 83 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 48999999999999999999999999 99999999533333333333344568889999998632 379
Q ss_pred cEEEEccCCCCccc--cc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIF--YK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 99 D~vi~~a~~~~~~~--~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
|++||+||...... .. ++++..+++|+.++..+.+++. +.+. ++|++||...+..
T Consensus 84 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~-------------- 149 (268)
T d2bgka1 84 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------- 149 (268)
T ss_dssp CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC--------------
T ss_pred ceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc--------------
Confidence 99999999754321 11 2355678999999988888653 3444 8999998865421
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.......|+.+|...+.+.+.++.+ +||+++.|.||.+..+.
T Consensus 150 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~ 194 (268)
T d2bgka1 150 -GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPL 194 (268)
T ss_dssp -CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCC
T ss_pred -ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChH
Confidence 1111236999999999999999876 48999999999998764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=5.3e-19 Score=138.42 Aligned_cols=167 Identities=18% Similarity=0.114 Sum_probs=117.2
Q ss_pred hhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc----------
Q 027129 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---------- 95 (228)
.|..++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++. ...++..+.+|+++...
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 355669999999999999999999999999 999999994333222222222 23468889999998632
Q ss_pred ---CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 ---IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 ---~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
..+|++||+||........ ++++..+++|+.++..+.+++ ++.+. ++|++||.....
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------- 150 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV----------- 150 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc-----------
Confidence 2599999999976543332 345678899999998888865 33443 999999986532
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +||+++.|-||.|-.+.
T Consensus 151 -----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~ 195 (259)
T d1xq1a_ 151 -----SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPL 195 (259)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---
T ss_pred -----cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHH
Confidence 2223467999999999999999876 48999999999987653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=2.5e-18 Score=133.24 Aligned_cols=158 Identities=18% Similarity=0.118 Sum_probs=121.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc--------cCCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL--------LIEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~--------~~~~D~v 101 (228)
++|+++||||++.||++++++|+++| ++|++.+|+ .+.+.++. +...+..+.+|+++.. +.++|++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~----~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRT----NSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 58999999999999999999999999 999999994 33332221 2246788899999863 3479999
Q ss_pred EEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----c-CC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----V-GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~-~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
||+||........ ++++..+++|+.++..+.+++.. . +. ++|++||...+. +..
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 142 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 142 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence 9999976543332 33567789999999988875432 2 33 899999986542 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....|+.+|...+.+.+.++.+ +||+++.|-||.+..+
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~ 183 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTD 183 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCH
Confidence 3367999999999999999876 4899999999998754
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.79 E-value=1.1e-18 Score=136.76 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=123.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||++.||++++++|+++| ++|++.+|+.....+...+.. ...++..+++|+++...
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999 999999995432222222211 12467889999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC--eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA--RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||...+.... +++...+++|+.++..+.+++ .+.+. +||++||...+.
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------- 150 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------- 150 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-------------
Confidence 3799999999986654332 345677899999998887764 34443 588999986431
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 151 ---~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~ 194 (261)
T d1geea_ 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTP 194 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSG
T ss_pred ---cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCH
Confidence 2223367999999999999999876 4899999999999765
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.79 E-value=1.1e-17 Score=130.04 Aligned_cols=166 Identities=14% Similarity=0.040 Sum_probs=121.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHh---cCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-------------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------- 95 (228)
||+|+||||++.||++++++|++ .| ++|++..|+..+..+.........++.++.+|+++...
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 79999999999999999999984 57 89999999766544322212234678999999998632
Q ss_pred -CCccEEEEccCCCCccc-c-c---CCchhhHHhhHHHHHHHHHHHH----Hc-----------CC-eEEEEccceeccC
Q 027129 96 -IEVDQIYHLACPASPIF-Y-K---YNPVKTIKTNVIGTLNMLGLAK----RV-----------GA-RILLTSTSEVYGD 153 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~-~-~---~~~~~~~~~n~~~~~~l~~~~~----~~-----------~~-r~i~~Ss~~~y~~ 153 (228)
.++|++||+||...... . . ++.++.+++|+.++..+.+++. +. +. ++|++||....-.
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 26999999999754432 1 2 2245678999999998887652 21 22 7999999743211
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 154 ~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
. .+......|+.||.....+.+.++.+ +|++++.+.||.+--+..
T Consensus 161 ~-------------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~ 208 (248)
T d1snya_ 161 G-------------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG 208 (248)
T ss_dssp T-------------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred C-------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcc
Confidence 0 12233457999999999999998765 489999999999876543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-18 Score=135.15 Aligned_cols=158 Identities=18% Similarity=0.159 Sum_probs=121.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||++.||+++++.|+++| ++|++.+|+ .+.++.+. +.....++.+|+++... .+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~----~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKD----ESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGR 79 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999999999 999999994 33333222 12467889999998632 37
Q ss_pred ccEEEEccCCCCccc-cc----CCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPIF-YK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~-~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
+|++||+||...... .. +++++.+++|+.++..+.+++. +.+.++|++||...+.
T Consensus 80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~---------------- 143 (250)
T d1ydea1 80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------------- 143 (250)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------
T ss_pred CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------------
Confidence 999999999653322 21 3356778999999988888653 3345899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~ 187 (250)
T d1ydea1 144 GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTP 187 (250)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCH
T ss_pred cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCh
Confidence 2223367999999999999999876 4899999999998543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.78 E-value=1.1e-18 Score=136.43 Aligned_cols=166 Identities=15% Similarity=0.087 Sum_probs=124.3
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc-----------
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~----------- 95 (228)
|..++|+++||||++.||++++++|+++| ++|++++|+..+..+..+.+.. ...+.++.+|+++...
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 44569999999999999999999999999 9999999954322222222221 3467788999998632
Q ss_pred --CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
..+|++||+||........ +++...+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------------ 148 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------ 148 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS------------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc------------
Confidence 2589999999976543332 3456788999999988887653 3344 899999987542
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +||++++|.||.+..+.
T Consensus 149 ----~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~ 193 (258)
T d1ae1a_ 149 ----ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPL 193 (258)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---
T ss_pred ----ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcc
Confidence 2233467999999999999999876 48999999999998753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=4.4e-19 Score=137.60 Aligned_cols=163 Identities=12% Similarity=0.010 Sum_probs=123.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
-++|+++||||++.||++++++|+++| .+|++.+|+..+..+...++. ...++..+.+|+++... .
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 358999999999999999999999999 999999994332222222221 23468889999998732 3
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
++|++||+||........ +..+..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~--------------- 148 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV--------------- 148 (244)
T ss_dssp CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC---------------
T ss_pred CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC---------------
Confidence 699999999987654433 234577899999998887754 44555 899999986541
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHH------hCCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQ------HGIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~------~~i~~~ilRp~~i~G~ 209 (228)
+....+.|+.+|.+.+.+.+.++.+ .|++++.+.||.|--+
T Consensus 149 -~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~ 195 (244)
T d1yb1a_ 149 -SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 195 (244)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence 2223367999999999999999875 3799999999987554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.77 E-value=1.5e-18 Score=135.94 Aligned_cols=162 Identities=16% Similarity=0.063 Sum_probs=122.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc------------CC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~------------~~ 97 (228)
++|+++||||++.||+++++.|.++| ++|++.+|+.....+....+.. ..++..+.+|+++... .+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999999 9999999943322222222222 2467889999998632 37
Q ss_pred ccEEEEccCCCCcc-ccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 98 ~D~vi~~a~~~~~~-~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
+|++||+||..... ... +++...+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~--------------- 147 (260)
T d1zema1 83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------------- 147 (260)
T ss_dssp CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS---------------
T ss_pred CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc---------------
Confidence 99999999975432 121 3356778999999998888653 3344 899999986542
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ ||+++.|.||.|-.+
T Consensus 148 -~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~ 191 (260)
T d1zema1 148 -GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 191 (260)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCc
Confidence 22233679999999999999998764 899999999998654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.77 E-value=2.6e-18 Score=134.25 Aligned_cols=160 Identities=20% Similarity=0.084 Sum_probs=120.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCcc------------cCCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEVD 99 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~------------~~~~D 99 (228)
|.++||||++.||++++++|+++| ++|++.+|+..+..+...++.. ..++..+++|+++.. +.++|
T Consensus 2 KValITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 457999999999999999999999 9999999953322222222221 246888999999863 23799
Q ss_pred EEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC--eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 100 QIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~--r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
++||+||........ ++++..+++|+.++..+.+++ .+.+. ++|++||...+. +
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------~ 144 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------G 144 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------C
T ss_pred EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc----------------c
Confidence 999999976543332 335678899999999888764 23332 799999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
....+.|+.+|...+.+.+.++.+ +||+++.|.||.+-.+
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 187 (255)
T d1gega_ 145 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP 187 (255)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH
T ss_pred CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh
Confidence 233467999999999999999876 4899999999998543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.77 E-value=5.8e-18 Score=132.10 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=122.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh--hhhhcCCCceEEEeccCCCc-c------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEP-L------------ 94 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~------------ 94 (228)
.++|+|+||||++.||.+++++|+++| .+|+++.|+..+..+. +........+.+...|++.. .
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G-~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRN-LKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTC-CSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999 8898988865543221 12233445788899998743 1
Q ss_pred cCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHH----c--C--CeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V--G--ARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 95 ~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
+.++|++||+||... .++.++.+++|+.++..+.+++.. . + .++|++||...+.
T Consensus 82 ~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~-------------- 143 (254)
T d1sbya1 82 LKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------- 143 (254)
T ss_dssp HSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred cCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc--------------
Confidence 137999999998543 466788999999999988886543 2 1 2799999986542
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|.....+.+.++.+ +|++++.|.||.|..+
T Consensus 144 --~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~ 187 (254)
T d1sbya1 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP 187 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence 3333467999999999999998876 4899999999999865
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.4e-17 Score=128.47 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=119.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc------ccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~D~vi~~ 104 (228)
++|+++||||++.||++++++|+++| ++|++.+| +.+.+++ ...+++..|+++. .+.++|++||+
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~G-a~V~~~~r----~~~~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEG-AEVTICAR----NEELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEES----CHHHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEEC----CHHHHHh----cCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 47999999999999999999999999 99999999 3444433 2346777888764 23479999999
Q ss_pred cCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCCh
Q 027129 105 ACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC 175 (228)
Q Consensus 105 a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~ 175 (228)
||........ +++++.+++|+.++..+.+++ ++.+. ++|++||..... +......
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~----------------~~~~~~~ 137 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PIENLYT 137 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CCTTBHH
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc----------------ccccccc
Confidence 9976543322 334567889999988887765 44454 899999976432 3333467
Q ss_pred HHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 176 YDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 176 y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
|+.+|...+.+.+.++.+ +||+++.|.||.+-.+.
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~ 175 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETER 175 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTT
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhh
Confidence 999999999999998876 48999999999987664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.77 E-value=1.6e-18 Score=135.27 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=120.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||+++++.|+++| ++|++.+|+.....+...++ ..+..++++|+++... .++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 81 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGTL 81 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 48999999999999999999999999 99999998432222222222 2457788999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCCeEEEEccceeccCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNPI 170 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~ 170 (228)
|++||+||...+.... ++++..+++|+.++..+.+++.. .+.+||++||...+. +.
T Consensus 82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------------~~ 145 (253)
T d1hxha_ 82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------PI 145 (253)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------CC
T ss_pred CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------------Cc
Confidence 9999999986543322 33567889999999888876543 333899999986531 22
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 171 GVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 171 ~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
.....|+.+|...+.+.+.++.+ ++|+++.|-||.+..+
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~ 189 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTP 189 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCH
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCH
Confidence 33467999999999999988765 3599999999998654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.8e-18 Score=132.79 Aligned_cols=163 Identities=17% Similarity=0.054 Sum_probs=121.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccCCCccc------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~------------~ 96 (228)
+|++|||||++.||+++++.|+++| ++|++.+|+..+..+..+++. ...++..+++|++++.. .
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999 999999995333222222222 22468889999998742 3
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcC---CeEEEEccceeccCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
++|++||+||........ ++++..+++|+.++..+.+.+ ++.+ .++|++||...+..
T Consensus 89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------------ 156 (257)
T d1xg5a_ 89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------------ 156 (257)
T ss_dssp CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC------------
T ss_pred CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC------------
Confidence 799999999976543332 345677899999988876654 3443 38999999864321
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
.|......|+.+|...+.+.+.++.+ ++++++.+-||.+-.+
T Consensus 157 --~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~ 203 (257)
T d1xg5a_ 157 --LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ 203 (257)
T ss_dssp --CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS
T ss_pred --CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCCh
Confidence 13333456999999999999988754 4899999999987543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=9.5e-18 Score=130.20 Aligned_cols=159 Identities=17% Similarity=0.092 Sum_probs=123.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc--------cCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~D~vi 102 (228)
++|+++||||++.||+++++.|+++| ++|++.+| +.+.+++..+...++....|+.... ..++|++|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~Vi~~~r----~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lV 79 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREG-AKVIATDI----NESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEES----CHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeC----CHHHHHHHHhccCCceeeeeccccccccccccccccceeEE
Confidence 48999999999999999999999999 99999999 4455555555567777777876642 23799999
Q ss_pred EccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCC
Q 027129 103 HLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR 173 (228)
Q Consensus 103 ~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~ 173 (228)
|++|........ +++...+++|+.++..+.+++. +.+. ++|++||.... . .+....
T Consensus 80 n~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~--~-------------~~~~~~ 144 (245)
T d2ag5a1 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS--V-------------KGVVNR 144 (245)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT--T-------------BCCTTB
T ss_pred ecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc--c-------------CCccch
Confidence 999987654332 3356778999999998887654 3344 89999986421 0 123344
Q ss_pred ChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 174 SCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 174 ~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
..|+.+|...+.+++.++.+ +||+++.|.||.|-.+
T Consensus 145 ~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~ 183 (245)
T d2ag5a1 145 CVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTP 183 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeech
Confidence 67999999999999999876 4899999999998765
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.76 E-value=3.7e-18 Score=132.40 Aligned_cols=160 Identities=15% Similarity=0.023 Sum_probs=120.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------CCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~~~ 98 (228)
+.++||||++.||++++++|+++| ++|++.+++.....+...+... ..++..+++|+++... .++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999 9998876533322222222111 2467889999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
|++||+||........ +++++.+++|+.++..+.+++ ++.+. +||++||...+- +
T Consensus 81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------------~ 144 (244)
T d1edoa_ 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------G 144 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------C
T ss_pred CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------------C
Confidence 9999999976544332 345678899999998888765 34444 999999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.++ ||+++.|.||.+-.+
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~ 187 (244)
T d1edoa_ 145 NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASD 187 (244)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSH
T ss_pred CCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccH
Confidence 2233679999999999999998774 899999999998654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.6e-18 Score=133.36 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=119.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCccc------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~------------ 95 (228)
++|+++||||++.||++++++|+++| .+|++++|+..+..+...++.. ..++.++++|+++...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999 9999999954333222222222 2468889999998632
Q ss_pred CCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHH----c--C--CeEEEEccceeccCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V--G--ARILLTSTSEVYGDPLVHPQDESYWGNV 167 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~ 167 (228)
.++|++||+||... ..++++.+++|+.++..+.+++.. . + .+||++||...+
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~---------------- 140 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL---------------- 140 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT----------------
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc----------------
Confidence 37999999998654 356778889999988877776532 2 2 269999998654
Q ss_pred CCCCCCChHHHhHHHHHHHHHH--HHH---HhCCcEEEeeeccccCC
Q 027129 168 NPIGVRSCYDEGKRVAETLMFD--YHR---QHGIEIRIARIFNTYGP 209 (228)
Q Consensus 168 ~~~~~~~~y~~sK~~~e~~~~~--~~~---~~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+. ++. .+|++++.|.||.|-.+
T Consensus 141 ~~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~ 187 (254)
T d2gdza1 141 MPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA 187 (254)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH
T ss_pred cCCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCCh
Confidence 2233346799999999999875 333 35899999999998543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.75 E-value=2e-18 Score=137.69 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=110.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh-h--hhhcCCCceEEEeccCCCcc-----cCCccEEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-L--RKWIGHPRFELIRHDVTEPL-----LIEVDQIY 102 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~--~~~~~~~~~~~~~~d~~~~~-----~~~~D~vi 102 (228)
+.+||||||||||||++++++|++.| |+|++++|........ . .......+++++++|+.+.. ..+.+.++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~ 80 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI 80 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhh
Confidence 35789999999999999999999999 9999999965543321 1 11223457899999998864 34789999
Q ss_pred EccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHH
Q 027129 103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR 181 (228)
Q Consensus 103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~ 181 (228)
++++.... ..|.....++++++++.+. ++++.||.++++.... .+..+...|...+.
T Consensus 81 ~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~-----------~~~~~~~~~~~~~~ 138 (312)
T d1qyda_ 81 SALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME-----------HALQPGSITFIDKR 138 (312)
T ss_dssp ECCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC-----------CCCSSTTHHHHHHH
T ss_pred hhhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc-----------cccchhhhhhHHHH
Confidence 98864321 2345556778888888876 8888898765543211 23444455666666
Q ss_pred HHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 182 ~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
.++.. ....+++++++||+.+||+...
T Consensus 139 ~~~~~----~~~~~~~~~i~r~~~~~g~~~~ 165 (312)
T d1qyda_ 139 KVRRA----IEAASIPYTYVSSNMFAGYFAG 165 (312)
T ss_dssp HHHHH----HHHTTCCBCEEECCEEHHHHTT
T ss_pred HHHHh----hcccccceEEeccceeecCCcc
Confidence 65554 4556899999999999996543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.75 E-value=1.3e-17 Score=131.45 Aligned_cols=162 Identities=16% Similarity=0.069 Sum_probs=118.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC----CCceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~----------- 95 (228)
++|+++||||++.||++++++|.++| ++|++.+|+..+..+....+.. ..++..+++|+++...
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999999943322222222222 2368899999998642
Q ss_pred -CCccEEEEccCCCCccccc----C----CchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccc-eeccCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYK----Y----NPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTS-EVYGDPLVHPQDE 161 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~----~----~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~-~~y~~~~~~~~~e 161 (228)
.++|++||+||...+.... + .+...+++|+.++..+.+++. +.+.++|+++|. ...
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~---------- 152 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP---------- 152 (272)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------
T ss_pred hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc----------
Confidence 3799999999986543321 1 245677899999988888653 333455555553 322
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ +||+++.|.||.|-.+
T Consensus 153 ------~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~ 197 (272)
T d1xkqa_ 153 ------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETG 197 (272)
T ss_dssp ------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSS
T ss_pred ------cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcch
Confidence 12223367999999999999999876 4899999999998654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.74 E-value=9.4e-18 Score=132.35 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=119.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~----------- 95 (228)
++|+++||||++.||++++++|+++| .+|++.+|+..+..+...++. ...++..+.+|+++...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 999999994332222222221 12368899999998742
Q ss_pred -CCccEEEEccCCCCccc--cc----CCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF--YK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~--~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||...... .. ++++..+++|+.++..+.+++. +.+. +++++||...+.
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~----------- 150 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ----------- 150 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS-----------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc-----------
Confidence 37999999998653321 11 2356778999999988887654 3344 677777764321
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|-.+
T Consensus 151 -----~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~ 194 (274)
T d1xhla_ 151 -----AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATG 194 (274)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSS
T ss_pred -----cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCc
Confidence 2223367999999999999998876 4899999999999654
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.74 E-value=1.3e-17 Score=128.97 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=119.9
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCe-------EEEEcCCCCCCchhhhhhcC-CCceEEEeccCCCccc----------
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNE-------VIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~-------V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~---------- 95 (228)
.|+||||++.||++++++|.++| ++ |++.+|+..+..+...++.. ...+..+.+|+++...
T Consensus 3 VvlITGas~GIG~aia~~la~~G-~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAA-RHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHT-TTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhC-ccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999 65 88888843222222222222 2467889999998632
Q ss_pred --CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||........ ++++..+++|+.++..+.+++ ++.+. ++|++||...+.
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 149 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------------ 149 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC------------
Confidence 3799999999986554333 345678899999998887765 44454 899999986542
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+....+.|+.+|...+.+.+.++.+ +|++++.+.||.+-.+.
T Consensus 150 ----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~ 194 (240)
T d2bd0a1 150 ----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPM 194 (240)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTT
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCch
Confidence 2223467999999999999998876 48999999999987654
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=9.8e-18 Score=133.58 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=121.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc------CCCceEEEeccCCCccc--------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~-------- 95 (228)
.++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++. ...++..+++|+++...
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~G-a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 348999999999999999999999999 999999995333222222221 12468889999998742
Q ss_pred ----CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHH----cCC-eEEEEccceeccCCCCCCCCCC
Q 027129 96 ----IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 96 ----~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
.++|++||+||........ +++...+++|+.++..+.+++.. .+. ++|++|+....
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~----------- 157 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA----------- 157 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-----------
Confidence 3799999999876543332 33567789999999998887643 233 78877765322
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.......|+.+|...+.+.+.++.+ +||+++.|.||.|..+.
T Consensus 158 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~ 202 (297)
T d1yxma1 158 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT 202 (297)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred ------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcc
Confidence 1122367999999999999999876 48999999999997653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.74 E-value=1.2e-17 Score=131.12 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=115.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCccc-----------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~----------- 95 (228)
++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++. ...++..+++|+++...
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 999999994332222222221 12358899999998632
Q ss_pred -CCccEEEEccCCCCccc--------ccCCchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccce-eccCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSE-VYGDPLVHPQDE 161 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~-~y~~~~~~~~~e 161 (228)
.++|++||+||...+.. ..++++..+++|+.++..+.+++. +.+.++|+++|.. .+
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~---------- 152 (264)
T d1spxa_ 83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL---------- 152 (264)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS----------
T ss_pred hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc----------
Confidence 37999999998753321 112356778999999988887653 3344666666543 22
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ +||+++.|.||.|-.+
T Consensus 153 ------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~ 197 (264)
T d1spxa_ 153 ------HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATG 197 (264)
T ss_dssp ------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCC
T ss_pred ------ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCc
Confidence 12222356999999999999999876 4899999999998655
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.74 E-value=2e-17 Score=129.49 Aligned_cols=171 Identities=16% Similarity=0.063 Sum_probs=123.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 95 (228)
-++|+++||||++.||++++++|+++| ++|++.+|+..+..+...++.. ..++..+++|++++..
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 85 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 348999999999999999999999999 9999999966554433333321 2468889999998742
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHH----Hc-CC-eEEEEccceeccCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLVHPQDESYWG 165 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~-~~-r~i~~Ss~~~y~~~~~~~~~e~~~~ 165 (228)
.++|++||+||........ +++++.+++|+.++..+.+++. +. +. +++..|+...+.......
T Consensus 86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~------- 158 (260)
T d1h5qa_ 86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL------- 158 (260)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET-------
T ss_pred CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc-------
Confidence 3799999999976543322 3456778999999988877543 22 33 677777765432211000
Q ss_pred CCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 166 ~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
........|+.+|...+.+.+.++.+ +||+++.|.||.|-.+.
T Consensus 159 --~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~ 204 (260)
T d1h5qa_ 159 --NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQ 204 (260)
T ss_dssp --TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGG
T ss_pred --ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcc
Confidence 11122357999999999999999876 48999999999997654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=5.3e-18 Score=132.57 Aligned_cols=167 Identities=14% Similarity=0.002 Sum_probs=118.1
Q ss_pred ccCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------- 95 (228)
..++|+++||||+| .||++++++|+++| ++|++.+|+.....+..+..........++.|+++...
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence 45689999999988 89999999999999 99988888432211111111223456788999998632
Q ss_pred -CCccEEEEccCCCCcccc-----c---CCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFY-----K---YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~-----~---~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
.++|++||+||....... + .++...+++|+.++..+.+++...- .++|++||.....
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----------- 152 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------- 152 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----------
Confidence 379999999987543211 1 2234577899999999888775431 2799999986532
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~~ 212 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+..+...
T Consensus 153 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~ 199 (256)
T d1ulua_ 153 -----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAAR 199 (256)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeecccc
Confidence 2233467999999999999999876 4899999999998776433
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.74 E-value=2e-17 Score=130.56 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=118.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
++|+++||||++.||++++++|+++| ++|++.+|+ .+.+.++.. ..++..+.+|+++... .
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~----~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 78 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKS----AERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFG 78 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC----HHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECC----HHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999 999999994 333332221 2468889999998632 3
Q ss_pred CccEEEEccCCCCcccc-----cC----CchhhHHhhHHHHHHHHHHH----HHcCCeEEEEccceeccCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFY-----KY----NPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~-----~~----~~~~~~~~n~~~~~~l~~~~----~~~~~r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
++|++||+||....... .+ .+++.+++|+.++..+.+++ ++.+.++|++||...+-
T Consensus 79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~----------- 147 (276)
T d1bdba_ 79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFY----------- 147 (276)
T ss_dssp CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS-----------
T ss_pred CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhcc-----------
Confidence 79999999997543221 11 24577899999998887765 34445888888875431
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHHh--CCcEEEeeeccccCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGP 209 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.++ +|+++.|.||.|-.+
T Consensus 148 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~ 190 (276)
T d1bdba_ 148 -----PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSD 190 (276)
T ss_dssp -----TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSC
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecC
Confidence 22233579999999999999998775 599999999998654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-17 Score=130.15 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=119.2
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--cCCCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~----------- 95 (228)
+.++|+++||||+++||++++++|+++| ++|++++|+..+..+...+. ...........|..+...
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G-~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 89 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 89 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 3558999999999999999999999999 99999999433222222221 123456777778776522
Q ss_pred -CCccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHH----HcCCeEEEEccceeccCCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGN 166 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~----~~~~r~i~~Ss~~~y~~~~~~~~~e~~~~~ 166 (228)
...|+++++||........+ +....+++|+.++..+.+.+. +.+.++|++||...+
T Consensus 90 ~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~--------------- 154 (269)
T d1xu9a_ 90 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK--------------- 154 (269)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT---------------
T ss_pred hCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc---------------
Confidence 26999999998765443332 234668999999888877653 334589999998653
Q ss_pred CCCCCCCChHHHhHHHHHHHHHHHHHHh-----CCcEEEeeeccccCC
Q 027129 167 VNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP 209 (228)
Q Consensus 167 ~~~~~~~~~y~~sK~~~e~~~~~~~~~~-----~i~~~ilRp~~i~G~ 209 (228)
.+......|+.||+..+.+.+.++.++ +++++.+.||.|-.+
T Consensus 155 -~~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~ 201 (269)
T d1xu9a_ 155 -VAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE 201 (269)
T ss_dssp -SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc
Confidence 233334689999999999999998653 588999999988643
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.72 E-value=6.4e-17 Score=126.47 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=119.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCc---hhhhhhc-CCCceEEEeccCCCccc----------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPLL---------- 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~d~~~~~~---------- 95 (228)
+.+.+++||||+|.||++++++|.++|..+|+++.|+..... +...++. ...++.++.+|+++...
T Consensus 7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~ 86 (259)
T d2fr1a1 7 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 86 (259)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence 346799999999999999999999999336888888532221 1122221 23468899999998532
Q ss_pred -CCccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
.++|.|||++|........+ +....++.|+.+..++.++++..+. +||++||....-.
T Consensus 87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g---------------- 150 (259)
T d2fr1a1 87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG---------------- 150 (259)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC----------------
T ss_pred cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccC----------------
Confidence 26999999999876544332 2345678999999999998877766 8999999865421
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhCCcEEEeeeccccCCCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~ 211 (228)
....+.|+.+|...+.+.+.+..+ |++++.|.||.+.+++.
T Consensus 151 ~~~~~~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~ 191 (259)
T d2fr1a1 151 APGLGGYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGM 191 (259)
T ss_dssp CTTCTTTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC----
T ss_pred CcccHHHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCcc
Confidence 222356999999999998877654 99999999999877653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.72 E-value=7.1e-17 Score=127.12 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=121.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc--CCCceEEEeccCCCccc------------
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------ 95 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~------------ 95 (228)
.++|+++||||++.||+++++.|+++| ++|++.+|+.....+...+.. ....+.++++|++++..
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 448999999999999999999999999 999999884333222222211 23468889999998632
Q ss_pred CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
.++|++||+++........ .++...+++|+.++..+.+++... +.++++++|..... .
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~---------------~ 159 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA---------------K 159 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC---------------S
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc---------------c
Confidence 3799999999876654333 234567789999999999887642 22777777764211 1
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
+......|+.+|+..+.+.+.++.+ +||+++.|.||.+-.
T Consensus 160 ~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T 202 (272)
T d1g0oa_ 160 AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKT 202 (272)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCC
Confidence 2334467999999999999999876 489999999999854
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.72 E-value=1.2e-17 Score=129.20 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=117.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------------CCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------------~~~ 98 (228)
++|+++||||++.||++++++|+++| ++|++..|+..+..+...++ ..++..+++|+++... .++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 48999999999999999999999999 99999999433222222222 2467788999998632 379
Q ss_pred cEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|++||+||........ +++...+++|+.++..+.+++...-. .++++|+.+.. +..
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-----------------~~~ 143 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-----------------GAF 143 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-----------------CHH
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-----------------ccc
Confidence 9999999876543332 33457789999999999998765432 45555554321 112
Q ss_pred CCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP 209 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~ 209 (228)
....|+.+|+..+.+.+.++.++ |+++++|.||.+-.+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~ 184 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTP 184 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCG
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCH
Confidence 23569999999999999998875 799999999998654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.72 E-value=1.9e-17 Score=131.14 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=103.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh--h--hhcCCCceEEEeccCCCccc-----CCccEE
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL--R--KWIGHPRFELIRHDVTEPLL-----IEVDQI 101 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~--~--~~~~~~~~~~~~~d~~~~~~-----~~~D~v 101 (228)
+.|||||||||||||++++++|+++| ++|++++|......... . .......++++.+|+.+... .+.+.+
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v 80 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 80 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence 46899999999999999999999999 99999999655532211 1 11223568899999888643 479999
Q ss_pred EEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhH
Q 027129 102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK 180 (228)
+|+++. .+..+..++++++...+. ++++.|+...+... . ....+...+...+
T Consensus 81 i~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~-------~-----~~~~~~~~~~~~~ 133 (307)
T d1qyca_ 81 ISTVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN-------V-----HAVEPAKSVFEVK 133 (307)
T ss_dssp EECCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTS-------C-----CCCTTHHHHHHHH
T ss_pred eecccc---------------cccchhhHHHHHHHHhccccceeeecccccccc-------c-----ccccccccccccc
Confidence 998852 233344577788888877 77877775443221 1 1222223344444
Q ss_pred HHHHHHHHHHHHHhCCcEEEeeeccccCCCCC
Q 027129 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 181 ~~~e~~~~~~~~~~~i~~~ilRp~~i~G~~~~ 212 (228)
...+. +..+.+++++++||+.+||+...
T Consensus 134 ~~~~~----~~~~~~~~~~i~r~~~v~g~~~~ 161 (307)
T d1qyca_ 134 AKVRR----AIEAEGIPYTYVSSNCFAGYFLR 161 (307)
T ss_dssp HHHHH----HHHHHTCCBEEEECCEEHHHHTT
T ss_pred ccccc----hhhccCCCceecccceecCCCcc
Confidence 44444 44556899999999999997644
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.72 E-value=3e-17 Score=128.44 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=117.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc------------C
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~------------~ 96 (228)
.+|+++||||++.||++++++|+++| ++|++..+...+..+...+... ...+..+.+|+++... .
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 38999999999999999999999999 9999876643332222222221 2467889999998632 3
Q ss_pred CccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccc-eeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTS-EVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~-~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||........ ++++..+++|+.++..+++.+...= .+++.++|. +.+.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~---------------- 147 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT---------------- 147 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC----------------
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc----------------
Confidence 799999999986544322 3346778999999999988776521 256666554 3221
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG 208 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G 208 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.+-.
T Consensus 148 ~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T 190 (259)
T d1ja9a_ 148 GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKT 190 (259)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSS
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccC
Confidence 1222357999999999999999876 489999999999853
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.5e-17 Score=130.58 Aligned_cols=162 Identities=15% Similarity=0.013 Sum_probs=116.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCC-----chhhhhhcCC--CceEEEeccCCCcc---------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-----KDNLRKWIGH--PRFELIRHDVTEPL--------- 94 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-----~~~~~~~~~~--~~~~~~~~d~~~~~--------- 94 (228)
++|+++||||++.||++++++|+++| .+|++.+|..... .+...+.... ........|.++..
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~G-a~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 84 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA 84 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence 48999999999999999999999999 9999998854321 1222211110 11223334444432
Q ss_pred ---cCCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCC
Q 027129 95 ---LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 95 ---~~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
+.++|++|||||...+.... ++++..+++|+.++..+.+++ ++.+. +||++||...+.
T Consensus 85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~---------- 154 (302)
T d1gz6a_ 85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY---------- 154 (302)
T ss_dssp HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------
T ss_pred HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC----------
Confidence 23799999999987654333 335678899999999888864 44554 999999986542
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|-|+.+--.
T Consensus 155 ------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~ 198 (302)
T d1gz6a_ 155 ------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRM 198 (302)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTT
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcc
Confidence 1222367999999999999999876 4899999999977443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.71 E-value=1.4e-16 Score=123.92 Aligned_cols=168 Identities=12% Similarity=-0.002 Sum_probs=116.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--------------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------------- 95 (228)
+.|+|+||||++.||++++++|+++|. ..|++..|+..+..+ +.+. ...++.++++|+++...
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~-l~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH-HHHh-hCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999983 378888885433222 2221 23578999999998632
Q ss_pred CCccEEEEccCCCCcccc--c---CCchhhHHhhHHHHHHHHHHHH----Hc------------CCeEEEEccceeccCC
Q 027129 96 IEVDQIYHLACPASPIFY--K---YNPVKTIKTNVIGTLNMLGLAK----RV------------GARILLTSTSEVYGDP 154 (228)
Q Consensus 96 ~~~D~vi~~a~~~~~~~~--~---~~~~~~~~~n~~~~~~l~~~~~----~~------------~~r~i~~Ss~~~y~~~ 154 (228)
.++|++||+||...+... . ++.++.+++|+.++..+.+.+. +. ..+++.+|+...+-..
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 159 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence 149999999997543221 1 2245788999999998887643 21 0157777776443211
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 155 ~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
.. .. .+..+...|+.||+....+.+.++.+ .|++++.+-||.|--+
T Consensus 160 ~~---~~------~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~ 208 (250)
T d1yo6a1 160 NT---SG------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp CC---ST------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---
T ss_pred Cc---cc------ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC
Confidence 00 00 23334456999999999999999876 4899999999998543
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=9.3e-17 Score=123.88 Aligned_cols=153 Identities=17% Similarity=0.070 Sum_probs=110.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------------ccC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------------LLI 96 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------~~~ 96 (228)
++|+|+||||+|.||++++++|.++| ++|.++++....... .......+..+. ...
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G-~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARN-WWVASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQ 70 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCcccccc---------ccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence 37999999999999999999999999 999999885433221 111222222211 012
Q ss_pred CccEEEEccCCCCc-cccc----CCchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCC
Q 027129 97 EVDQIYHLACPASP-IFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVN 168 (228)
Q Consensus 97 ~~D~vi~~a~~~~~-~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~ 168 (228)
++|++||+||.... .... ++.+..+++|+.++..+.+++.+. +.++|++||...+.
T Consensus 71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------------- 134 (236)
T d1dhra_ 71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------------- 134 (236)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------------
Confidence 58999999985322 2222 234567899999999998887653 22899999986542
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 169 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 169 ~~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
+......|+.||...+.+.+.++.+ .|++++.+.||.+..+
T Consensus 135 ~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~ 180 (236)
T d1dhra_ 135 GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP 180 (236)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH
T ss_pred CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC
Confidence 2233467999999999999999865 4799999999998765
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=2e-16 Score=125.32 Aligned_cols=160 Identities=21% Similarity=0.178 Sum_probs=116.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEE---cCCCCCCchhhh----hhc-CCCceEEEeccCCCccc--------
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV---DNYFTGSKDNLR----KWI-GHPRFELIRHDVTEPLL-------- 95 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~---~r~~~~~~~~~~----~~~-~~~~~~~~~~d~~~~~~-------- 95 (228)
.|.|+||||+++||++++++|.++| .+|+.+ .|+.... +.+. .+. ....+..+++|+++...
T Consensus 2 kkVvlITGassGIG~a~A~~la~~G-a~v~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~ 79 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDP-SQSFKVYATLRDLKTQ-GRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCT-TCCEEEEEEESCGGGT-HHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCC-CCeEEEEEecCChhhh-HHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence 3567899999999999999999999 665444 3422211 1121 111 23578899999998632
Q ss_pred --CCccEEEEccCCCCccccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 --IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 --~~~D~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
..+|+++|++|........ +++...+++|+.++.++.+++ ++.+. ++|++||....-
T Consensus 80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~------------ 147 (285)
T d1jtva_ 80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------ 147 (285)
T ss_dssp TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS------------
T ss_pred cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC------------
Confidence 3699999999887654433 334567899999998888764 45555 899999986531
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++++.||.|-.+
T Consensus 148 ----~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 ----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 2233467999999999999999876 4999999999998654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.68 E-value=3.8e-16 Score=120.31 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=109.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------------ccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------------LLIE 97 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------~~~~ 97 (228)
..||+||||++.||++++++|+++| ++|++++|....... ......+|..+. ...+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 71 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQ 71 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCchhccc---------ccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999 999999995443221 112223333221 1236
Q ss_pred ccEEEEccCCCCc-ccccC----CchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCCCCCCCCCCCCCCC
Q 027129 98 VDQIYHLACPASP-IFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNP 169 (228)
Q Consensus 98 ~D~vi~~a~~~~~-~~~~~----~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~ 169 (228)
+|++||+||.... ..... ..+..+++|+.++..+.+++... +.++|++||...+. +
T Consensus 72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------------~ 135 (235)
T d1ooea_ 72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------P 135 (235)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC----------------C
Confidence 9999999986432 12222 23456899999998888877653 23899999986542 2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHH-----hCCcEEEeeeccccCC
Q 027129 170 IGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP 209 (228)
Q Consensus 170 ~~~~~~y~~sK~~~e~~~~~~~~~-----~~i~~~ilRp~~i~G~ 209 (228)
......|+.+|...+.+.+.++.+ .+++++.+.|+.+-.+
T Consensus 136 ~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~ 180 (235)
T d1ooea_ 136 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP 180 (235)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc
Confidence 333467999999999999999866 3778899999988665
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=2.4e-16 Score=123.15 Aligned_cols=162 Identities=10% Similarity=-0.007 Sum_probs=120.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHh---cCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc---------
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL--------- 95 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--------- 95 (228)
++|.++||||++.||++++++|.+ +| ++|++++|+..+..+...++ ....++..+++|+++...
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~ 83 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPG-SVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR 83 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTT-CEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 479999999999999999999986 68 99999999433222222222 223478899999998521
Q ss_pred -------CCccEEEEccCCCCccc---c-c---CCchhhHHhhHHHHHHHHHHHHH----cC-C--eEEEEccceeccCC
Q 027129 96 -------IEVDQIYHLACPASPIF---Y-K---YNPVKTIKTNVIGTLNMLGLAKR----VG-A--RILLTSTSEVYGDP 154 (228)
Q Consensus 96 -------~~~D~vi~~a~~~~~~~---~-~---~~~~~~~~~n~~~~~~l~~~~~~----~~-~--r~i~~Ss~~~y~~~ 154 (228)
...|++||+||...+.. . . +++...+++|+.++..+.+++.. .+ . ++|++||...+
T Consensus 84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~--- 160 (259)
T d1oaaa_ 84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--- 160 (259)
T ss_dssp HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred HhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc---
Confidence 25789999998754321 1 1 23456789999999999998754 22 2 79999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH-hCCcEEEeeeccccCC
Q 027129 155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGP 209 (228)
Q Consensus 155 ~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~-~~i~~~ilRp~~i~G~ 209 (228)
.+......|+.+|...+.+.+.++.+ +|++++.+.||.|..+
T Consensus 161 -------------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 161 -------------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND 203 (259)
T ss_dssp -------------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred -------------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence 23334478999999999999999766 4899999999999765
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.67 E-value=1.8e-16 Score=123.48 Aligned_cols=155 Identities=16% Similarity=0.118 Sum_probs=111.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCccEE
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQI 101 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~D~v 101 (228)
|++||||++.||++++++|.++| ++|++.+|+.... +.+.... ..+.+.|+++.. +.++|++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~G-a~V~i~~r~~~~~-~~~~~~~----~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL 75 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQK-DELEAFA----ETYPQLKPMSEQEPAELIEAVTSAYGQVDVL 75 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTT-CEEEECCGGGGSH-HHHHHHH----HHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHH-HHHHhhh----CcEEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 78999999999999999999999 9999998853332 2222211 122344554432 2379999
Q ss_pred EEccCCCCcc-ccc----CCchhhHHhhHHHHHHHHHHH----HHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCC
Q 027129 102 YHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171 (228)
Q Consensus 102 i~~a~~~~~~-~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~ 171 (228)
|||||..... ... +++...+++|+.++..+.+++ ++.+. +||++||...+. +..
T Consensus 76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~ 139 (252)
T d1zmta1 76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWK 139 (252)
T ss_dssp EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCT
T ss_pred EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------ccc
Confidence 9999865321 121 335567789999988887764 44444 999999986542 222
Q ss_pred CCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 172 ~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
....|+.+|...+.+.+.++.+ +||+++.|.||.|-.+.
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~ 181 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSED 181 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBT
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcc
Confidence 3357999999999999999876 48999999999997654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.4e-16 Score=125.63 Aligned_cols=176 Identities=18% Similarity=0.068 Sum_probs=120.9
Q ss_pred CCEE-EEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCccc------------C
Q 027129 32 NMRI-LVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I 96 (228)
Q Consensus 32 ~~~v-lItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~------------~ 96 (228)
+|+| +||||+++||++++++|++. | .+|++..|+..+..+..+++. ....+.++++|+++... .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5666 89999999999999999986 7 899999995443333233322 23468899999998642 3
Q ss_pred CccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHHHc---CCeEEEEccceeccCCCC-CC----------
Q 027129 97 EVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLV-HP---------- 158 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~---~~r~i~~Ss~~~y~~~~~-~~---------- 158 (228)
++|++||+||......... +.+..+++|+.++..+.+.+... +.|+|++||......... .+
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~ 160 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 160 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccc
Confidence 7999999999876544332 24467899999999999987542 128999999754211000 00
Q ss_pred CCC---------------CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH-------hCCcEEEeeeccccCC
Q 027129 159 QDE---------------SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-------HGIEIRIARIFNTYGP 209 (228)
Q Consensus 159 ~~e---------------~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~-------~~i~~~ilRp~~i~G~ 209 (228)
..+ ... ...+..+...|+.||.....+.+.++.+ .+++++.+-||.|-.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 161 ITEEELVGLMNKFVEDTKKGV-HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-TTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cchhhhccccccchhcccccc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 000 000 0023334567999999998887776544 2899999999998654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=5.4e-16 Score=120.38 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=118.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------------cCCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV 98 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------~~~~ 98 (228)
++|+++||||++.||++++++|.++| ++|++++|+.....+..+++. ........|..+.. ....
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKLG--NNCVFAPADVTSEKDVQTALALAKGKFGRV 80 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECTTSSHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhC--CCcccccccccccccccccccccccccccc
Confidence 48999999999999999999999999 999999996554443333332 35566666666542 1368
Q ss_pred cEEEEccCCCCcccc----------cCCchhhHHhhHHHHHHHHHHHHHc----------CC-eEEEEccceeccCCCCC
Q 027129 99 DQIYHLACPASPIFY----------KYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVH 157 (228)
Q Consensus 99 D~vi~~a~~~~~~~~----------~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-r~i~~Ss~~~y~~~~~~ 157 (228)
|.++++++....... .+++...+++|+.++..+.+++... +. +||++||...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~----- 155 (248)
T d2o23a1 81 DVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE----- 155 (248)
T ss_dssp CEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-----
T ss_pred cccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc-----
Confidence 888888765332111 1234567899999999998887442 22 799999987542
Q ss_pred CCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 158 ~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.+..+.
T Consensus 156 -----------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~ 200 (248)
T d2o23a1 156 -----------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPL 200 (248)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecch
Confidence 2233467999999999999999876 48999999999987664
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.67 E-value=3.6e-16 Score=124.34 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=116.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC--CCceEEEeccCCCccc-----------
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------- 95 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~----------- 95 (228)
.-++|+++||||+|.||++++++|+++| ++|++++|+..+..+...++.. ...+..+++|+++...
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 3448999999999999999999999999 9999999954333332322221 2467788999998643
Q ss_pred -CCccEEEEccCCCCcccccC----CchhhHHhhHHHHHHHHHHHH----HcC-C-eEEEEccceeccCCCCCCCCCCCC
Q 027129 96 -IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYW 164 (228)
Q Consensus 96 -~~~D~vi~~a~~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~----~~~-~-r~i~~Ss~~~y~~~~~~~~~e~~~ 164 (228)
.++|++||+||......... +....+.+|......+...+. ... . .++.+|+.....
T Consensus 101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------ 168 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------ 168 (294)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------
Confidence 37999999999765543332 234556777777666655432 222 3 577777764332
Q ss_pred CCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 165 ~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
+......|+.+|...+.+.+.++.+ +||++++|.||.|..+.
T Consensus 169 ----~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~ 213 (294)
T d1w6ua_ 169 ----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKG 213 (294)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ----cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccch
Confidence 1122356999999999999999876 48999999999997653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.66 E-value=8.7e-16 Score=124.79 Aligned_cols=146 Identities=13% Similarity=0.027 Sum_probs=105.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc------cCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~D~vi~~ 104 (228)
+.|+|+|||||||||++++++|++.| ++|+++.|+..+. ....+.....++++++|+++.. +..+|.+++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~--~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~ 78 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGL--IAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 78 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSH--HHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchh--hhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence 46899999999999999999999999 9999999954432 2223334467999999998852 3467877765
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHH
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA 183 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~ 183 (228)
.... ...++....++++++.+.++ +++++||....... ...+...|..+|...
T Consensus 79 ~~~~------------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~--------------~~~~~~~~~~~k~~~ 132 (350)
T d1xgka_ 79 TTSQ------------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY--------------GPWPAVPMWAPKFTV 132 (350)
T ss_dssp CCST------------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT--------------SSCCCCTTTHHHHHH
T ss_pred cccc------------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccC--------------CcccchhhhhhHHHH
Confidence 4211 13456677899999999997 88888887543221 122223467788777
Q ss_pred HHHHHHHHHHhCCcEEEeeeccccCC
Q 027129 184 ETLMFDYHRQHGIEIRIARIFNTYGP 209 (228)
Q Consensus 184 e~~~~~~~~~~~i~~~ilRp~~i~G~ 209 (228)
+.... +.+++++++||+.+++.
T Consensus 133 ~~~~~----~~~~~~~~vr~~~~~~~ 154 (350)
T d1xgka_ 133 ENYVR----QLGLPSTFVYAGIYNNN 154 (350)
T ss_dssp HHHHH----TSSSCEEEEEECEEGGG
T ss_pred HHHHH----hhccCceeeeeceeecc
Confidence 76644 35789999999987764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.6e-15 Score=116.24 Aligned_cols=165 Identities=15% Similarity=0.015 Sum_probs=116.4
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc------------
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------ 94 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------ 94 (228)
.++|+++||||+| .||+++++.|+++| ++|++..|+. +..+...+.. ........+.|..+..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G-~~V~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcC-CEEEEEeCCH-HHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 3589999999998 79999999999999 9999999953 3333333322 2334566677766642
Q ss_pred cCCccEEEEccCCCCcccccC---------CchhhHHhhHHHHHHHHHHHHHcC---CeEEEEccceeccCCCCCCCCCC
Q 027129 95 LIEVDQIYHLACPASPIFYKY---------NPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDES 162 (228)
Q Consensus 95 ~~~~D~vi~~a~~~~~~~~~~---------~~~~~~~~n~~~~~~l~~~~~~~~---~r~i~~Ss~~~y~~~~~~~~~e~ 162 (228)
...+|++||+++......... .....+..|..+...+.+++...- ..+|++||....
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~----------- 149 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------- 149 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------
Confidence 236999999998765433211 123345667777777777665432 258888887542
Q ss_pred CCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh---CCcEEEeeeccccCCCCC
Q 027129 163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN 212 (228)
Q Consensus 163 ~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~i~~~ilRp~~i~G~~~~ 212 (228)
.+......|+.+|...+.+.+.++.++ ||+++.|.||.|..+...
T Consensus 150 -----~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~ 197 (258)
T d1qsga_ 150 -----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS 197 (258)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGG
T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccc
Confidence 122233679999999999999998874 799999999999877544
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=9.8e-14 Score=106.70 Aligned_cols=150 Identities=21% Similarity=0.165 Sum_probs=107.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----------CCccE
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ 100 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~D~ 100 (228)
.|+++||||++.||++++++|+++| ++|++.+|+.... +....+.|+.+... ...+.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 68 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFA 68 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCcccc-----------cceEeeccccchhhhHHHHHhhhccccccc
Confidence 4899999999999999999999999 9999999953321 34455666665421 24555
Q ss_pred EEEccCCCCcccc--------cCCchhhHHhhHHHHHHHHHHHHHc----------CC-eEEEEccceeccCCCCCCCCC
Q 027129 101 IYHLACPASPIFY--------KYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 101 vi~~a~~~~~~~~--------~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-r~i~~Ss~~~y~~~~~~~~~e 161 (228)
++++++....... .......++.|......+.+.+... +. ++|++||...+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--------- 139 (241)
T d1uaya_ 69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--------- 139 (241)
T ss_dssp EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---------
T ss_pred hhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---------
Confidence 5555544322111 1223466788988888887765432 22 799999986542
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +||+++.|.||.|..+
T Consensus 140 -------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~ 183 (241)
T d1uaya_ 140 -------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTP 183 (241)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSH
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCccccc
Confidence 2223467999999999999999876 4899999999998654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.52 E-value=1.4e-13 Score=107.98 Aligned_cols=164 Identities=12% Similarity=-0.003 Sum_probs=106.7
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-CCCceEEEeccCCCcc------------
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------ 94 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~------------ 94 (228)
.++|++|||||+| .||++++++|+++| ++|++.+|+. ...+..+++. ......+...|+++..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~G-a~V~i~~r~~-~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNE-SLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCC-CEEEEEeCCH-HHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 3489999999877 89999999999999 9999999963 2222333222 1235567788888753
Q ss_pred cCCccEEEEccCCCCcccccCC----chhhHH----hhHHHHHHHHHHHHHcCC---eEEEEccceeccCCCCCCCCCCC
Q 027129 95 LIEVDQIYHLACPASPIFYKYN----PVKTIK----TNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY 163 (228)
Q Consensus 95 ~~~~D~vi~~a~~~~~~~~~~~----~~~~~~----~n~~~~~~l~~~~~~~~~---r~i~~Ss~~~y~~~~~~~~~e~~ 163 (228)
+..+|++||++|.......... ....+. .+............+... .++.+|+.....
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~----------- 149 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------- 149 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence 2379999999987654332222 112222 122223333333333222 355555554432
Q ss_pred CCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCCC
Q 027129 164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM 211 (228)
Q Consensus 164 ~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~~ 211 (228)
+......|+.+|...+.+.+.++.+ +|++++.+.||.+..+..
T Consensus 150 -----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~ 195 (274)
T d2pd4a1 150 -----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLAS 195 (274)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTG
T ss_pred -----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccc
Confidence 2233356999999999999998876 489999999999887644
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.52 E-value=2.9e-13 Score=106.55 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=106.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc---CCCceEEEeccC-----------------C
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDV-----------------T 91 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~d~-----------------~ 91 (228)
+..++||||++.||++++++|+++| ++|++..++.....+.+.+.+ .......++.|. +
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~G-a~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~ 80 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT 80 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence 4678999999999999999999999 999988774333222222111 123344455443 3
Q ss_pred Ccc------------cCCccEEEEccCCCCcccccC----Cc--------------hhhHHhhHHHHHHHHHHHHHc---
Q 027129 92 EPL------------LIEVDQIYHLACPASPIFYKY----NP--------------VKTIKTNVIGTLNMLGLAKRV--- 138 (228)
Q Consensus 92 ~~~------------~~~~D~vi~~a~~~~~~~~~~----~~--------------~~~~~~n~~~~~~l~~~~~~~--- 138 (228)
+.. +.++|++||+||...+....+ ++ ...+.+|+.++..+.+++.+.
T Consensus 81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 221 137999999999865433221 11 125677888888887765431
Q ss_pred ------C-C-eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccc
Q 027129 139 ------G-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT 206 (228)
Q Consensus 139 ------~-~-r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i 206 (228)
+ . ++|++++.... .+......|+.+|...+.+.+.++.+ +||+++.|.||.+
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t 223 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTN----------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 223 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTT----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred hHHHhcCCCCccccccccccc----------------CCccceeeeccccccchhhhHHHHHHhCCccccccccccccc
Confidence 2 2 67777776432 23333467999999999999999876 4899999999964
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.47 E-value=2.8e-13 Score=105.82 Aligned_cols=162 Identities=12% Similarity=0.020 Sum_probs=105.7
Q ss_pred cCCCEEEEecCc--chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcc-------------
Q 027129 30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------- 94 (228)
Q Consensus 30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------- 94 (228)
.++|+++||||+ .+||++++++|.++| .+|++..|+..+..+...+.. ......+++|+.+..
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~G-a~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTT-CEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhcc
Confidence 458999999964 479999999999999 999999885333222222222 235667888988752
Q ss_pred --cCCccEEEEccCCCCccccc------CCc---hhhHHhhHHHHHHHHHHHHHcCC--eEEEEccceeccCCCCCCCCC
Q 027129 95 --LIEVDQIYHLACPASPIFYK------YNP---VKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE 161 (228)
Q Consensus 95 --~~~~D~vi~~a~~~~~~~~~------~~~---~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss~~~y~~~~~~~~~e 161 (228)
...+|+++|++|........ ... ...+..|................ .++.++|.....
T Consensus 82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--------- 152 (268)
T d2h7ma1 82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--------- 152 (268)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---------
T ss_pred ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---------
Confidence 12589999999865432211 111 22334455555555555444332 344444443221
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCC
Q 027129 162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP 209 (228)
Q Consensus 162 ~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~ 209 (228)
+......|+.+|...+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 153 -------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~ 196 (268)
T d2h7ma1 153 -------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL 196 (268)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred -------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCCh
Confidence 1222357999999999999998876 4899999999988543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.47 E-value=1.7e-12 Score=101.11 Aligned_cols=161 Identities=16% Similarity=0.095 Sum_probs=104.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-h--cCCCceEEEeccCCCcc---------------
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-W--IGHPRFELIRHDVTEPL--------------- 94 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~--~~~~~~~~~~~d~~~~~--------------- 94 (228)
.+++||||++.||++++++|+++| ++|++.+|+..+..+.+.+ + .........+.+..+..
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G-~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 478999999999999999999999 9999999954433222211 1 11234555555554321
Q ss_pred -cCCccEEEEccCCCCcccccCC---------------chhhHHhhHHHHHHHHHHHHHc---------CC-eEEEEccc
Q 027129 95 -LIEVDQIYHLACPASPIFYKYN---------------PVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTS 148 (228)
Q Consensus 95 -~~~~D~vi~~a~~~~~~~~~~~---------------~~~~~~~n~~~~~~l~~~~~~~---------~~-r~i~~Ss~ 148 (228)
+.++|++||+||...+...... ....+..|.............. .. .++.+|+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 2369999999997654322110 1123344555444444443321 11 45666665
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 149 ~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
... .+......|+.+|...+.+.+.++.+ +||+++.|.||.+.-+.
T Consensus 161 ~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~ 209 (266)
T d1mxha_ 161 MTD----------------LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPP 209 (266)
T ss_dssp GGG----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCS
T ss_pred ccc----------------ccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccc
Confidence 432 12334467999999999999999876 58999999999987654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.40 E-value=5e-12 Score=99.97 Aligned_cols=168 Identities=10% Similarity=-0.020 Sum_probs=106.6
Q ss_pred cCCCEEEEecCcc--hhHHHHHHHHHhcCCCeEEEEcCCCCCC------------chhhhhhcCCC---ceEEEeccCCC
Q 027129 30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNLRKWIGHP---RFELIRHDVTE 92 (228)
Q Consensus 30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------~~~~~~~~~~~---~~~~~~~d~~~ 92 (228)
.++|+++||||+| .||++++++|+++| .+|++..|..... ........... ++.....++.+
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAG-AEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCC-CEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence 4589999999887 89999999999999 9999988732110 00000000001 11222222211
Q ss_pred c------------------------------ccCCccEEEEccCCCCcc---cc---cCCchhhHHhhHHHHHHHHHHHH
Q 027129 93 P------------------------------LLIEVDQIYHLACPASPI---FY---KYNPVKTIKTNVIGTLNMLGLAK 136 (228)
Q Consensus 93 ~------------------------------~~~~~D~vi~~a~~~~~~---~~---~~~~~~~~~~n~~~~~~l~~~~~ 136 (228)
. .+.++|++||+||..... .. .+++...+++|+.+...+.+++.
T Consensus 85 ~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~ 164 (297)
T d1d7oa_ 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred cccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHH
Confidence 1 123799999999864321 11 12345678999999999998876
Q ss_pred HcCC---eEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHH----HhCCcEEEeeeccccCC
Q 027129 137 RVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR----QHGIEIRIARIFNTYGP 209 (228)
Q Consensus 137 ~~~~---r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~----~~~i~~~ilRp~~i~G~ 209 (228)
.... +++.+++...... .......|..+|...+.+.+.++. ++|++++.|.||.+..+
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~ 229 (297)
T d1d7oa_ 165 PIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCC
T ss_pred HHhhcCCcceeeeehhhccc---------------ccccccceecccccccccccccchhccccceEEecccccccccch
Confidence 5432 4555555543211 112234699999988888776554 35899999999999877
Q ss_pred CCCC
Q 027129 210 RMNI 213 (228)
Q Consensus 210 ~~~~ 213 (228)
....
T Consensus 230 ~~~~ 233 (297)
T d1d7oa_ 230 AAKA 233 (297)
T ss_dssp CSSC
T ss_pred hhhh
Confidence 5543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.36 E-value=1e-13 Score=107.65 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=97.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
||.|+||||++.||++++++|.++| ++|++++|+..+....+.. .........+........+|+++++||....
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~G-a~V~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~- 75 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAG-HQIVGIDIRDAEVIADLST---AEGRKQAIADVLAKCSKGMDGLVLCAGLGPQ- 75 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEECCTTS---HHHHHHHHHHHHTTCTTCCSEEEECCCCCTT-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHhcC---HHHHHHHHHHHHHHhCCCCcEEEEcCCCCCc-
Confidence 7889999999999999999999999 9999999854322111110 0001111112222233469999999986432
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHH----HcCC-eEEEEccceecc-CCCCCCCCC----CCC-------CCCCCCCCCC
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG-DPLVHPQDE----SYW-------GNVNPIGVRS 174 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-r~i~~Ss~~~y~-~~~~~~~~e----~~~-------~~~~~~~~~~ 174 (228)
..........|..+...+.+... +... ....+++..... .....+... ... ..........
T Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~ 153 (257)
T d1fjha_ 76 --TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL 153 (257)
T ss_dssp --CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchH
Confidence 23344556677777766665432 2233 444444432211 000000000 000 0000111223
Q ss_pred hHHHhHHHHHHHHHHHHHH---hCCcEEEeeeccccCCC
Q 027129 175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR 210 (228)
Q Consensus 175 ~y~~sK~~~e~~~~~~~~~---~~i~~~ilRp~~i~G~~ 210 (228)
.|+.+|...+.+.+.++.+ +||+++.|.||.+-.+.
T Consensus 154 ~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~ 192 (257)
T d1fjha_ 154 AYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL 192 (257)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----
T ss_pred HHHHHhhhhhccccccccccccccccccccccCCcCChh
Confidence 5999999999999998865 48999999999986653
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.36 E-value=3.6e-12 Score=102.46 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=105.0
Q ss_pred CCEEEEec--CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhh--------hhhc-C----CCceEEEecc-------
Q 027129 32 NMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL--------RKWI-G----HPRFELIRHD------- 89 (228)
Q Consensus 32 ~~~vlItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~--------~~~~-~----~~~~~~~~~d------- 89 (228)
+|.+|||| ++..||+++++.|.++| .+|++..+......... .... . .........|
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~G-A~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRN-VKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTT-CEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcC-CEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 68899999 55799999999999999 99998876322111000 0000 0 0111222222
Q ss_pred -------------CCCcc------------cCCccEEEEccCCCCcc---c---ccCCchhhHHhhHHHHHHHHHHHHHc
Q 027129 90 -------------VTEPL------------LIEVDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAKRV 138 (228)
Q Consensus 90 -------------~~~~~------------~~~~D~vi~~a~~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~~~ 138 (228)
+++.. +.++|++||++|..... . ..+++...+++|+.++..+.+++...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 22221 13799999999865421 1 11335567889999988888887653
Q ss_pred -C--CeEEEEccceeccCCCCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH----hCCcEEEeeeccccC
Q 027129 139 -G--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG 208 (228)
Q Consensus 139 -~--~r~i~~Ss~~~y~~~~~~~~~e~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~----~~i~~~ilRp~~i~G 208 (228)
. .++|.+||...... .+...+.|+.+|...+.+.+.++.+ +||+++.|.||.|--
T Consensus 161 m~~~GsIv~iss~~~~~~---------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKV---------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhccc---------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 1 27999988754321 1122356999999999999998754 589999999998743
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.14 E-value=2.7e-12 Score=95.23 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=58.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~vi~ 103 (228)
..++|+++||||+|+||+.+++.|.++| .+|+++.|+.++..+....+.....+.....|+.+. ...++|+|||
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence 3458999999999999999999999999 999999995443333222222223445566666664 3458999999
Q ss_pred ccCCCC
Q 027129 104 LACPAS 109 (228)
Q Consensus 104 ~a~~~~ 109 (228)
+||.+.
T Consensus 99 ~Ag~g~ 104 (191)
T d1luaa1 99 AGAIGL 104 (191)
T ss_dssp CCCTTC
T ss_pred cCcccc
Confidence 998643
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.51 E-value=4.5e-07 Score=63.38 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=71.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhh----cCCCceEEEeccCCCcccCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKW----IGHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
+++.|||.|+|+ |++|..++..|+..+ ..+|+++++..........++ ...........|. .+..++|+||.
T Consensus 2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvi 78 (146)
T d1ez4a1 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVI 78 (146)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEE
Confidence 455789999996 999999999999987 368999998432221111111 1112223344443 34568999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcc
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss 147 (228)
++|... ....+....++.|....+.+++.+.+++. -++.+-|
T Consensus 79 tag~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 79 TAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred eccccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 998533 22344556778999999999999999876 3444433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=8.2e-07 Score=61.89 Aligned_cols=112 Identities=16% Similarity=0.057 Sum_probs=74.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhc-C-CCeEEEEcCCCCCCchhhhhhcC---CCceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~-g-~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+|++|.+|.+++-.|... + ..++.+++..+ .......++.+ ......+..+-......+.|+||.+||.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 78999999999999999887643 3 27899998742 22222222222 1222223222222345689999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
. .....+....++.|....+.+.+.+.+++. .+|.+|.
T Consensus 80 ~--~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 80 R--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp C--CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred c--CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 4 233455667889999999999999998875 4555554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.49 E-value=1.2e-06 Score=61.11 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=73.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCc--h---hhhhhc--CCCceEEE-eccCCCcccCCccEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK--D---NLRKWI--GHPRFELI-RHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~--~---~~~~~~--~~~~~~~~-~~d~~~~~~~~~D~vi~ 103 (228)
|||.|+||+|.+|..++-.|...+- .++.++++...... . .+.... .....+.. ..+-......++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 7899999999999999999998873 69999988422111 0 111111 11223332 22222345668999999
Q ss_pred ccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEE
Q 027129 104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145 (228)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~ 145 (228)
+||.. .....+....++.|....+.++..+.+++. .++.+
T Consensus 81 tAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 81 TSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99853 333345567789999999999999988765 44434
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.39 E-value=1.4e-06 Score=60.55 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=74.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC---CceE-EEeccCCCcccCCccEEEEccCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH---PRFE-LIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~---~~~~-~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
||.|+||+|.+|.+++-.|...+- .++++++..+. .....++... .... .+..+-......+.|+||.+||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 799999999999999999988873 68999987421 2122222211 1112 222221123456899999999853
Q ss_pred CcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
.....+....++.|....+.+++.+.+++. .++.+|.
T Consensus 80 --~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 80 --RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp --CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred --CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 233456677889999999999999999876 4555544
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=5.2e-07 Score=62.97 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=57.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC---CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC-cccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~D~vi~~a~~ 107 (228)
||||.|+||||++|+.+++.|+++. ..+++++.+++.....-.. . ..... ..+..+ ..+.++|++|.+++.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~--~-~~~~~--~~~~~~~~~~~~~DivF~a~~~ 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF--G-GTTGT--LQDAFDLEALKALDIIVTCQGG 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG--G-TCCCB--CEETTCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc--c-CCcee--eecccchhhhhcCcEEEEecCc
Confidence 7899999999999999999888653 2577777664333221110 0 01111 111222 245689999988741
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
.....+...+.+.|++.+.++.++.|
T Consensus 76 ------------------~~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 76 ------------------DYTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp ------------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred ------------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence 12345566666778764445544444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.34 E-value=1.8e-06 Score=60.81 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=75.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCcccCCccEEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYH 103 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~D~vi~ 103 (228)
+...+||.|+|+ |.+|+.++..|...+-.++++++.+.........++. ..........+..+....+.|+|+.
T Consensus 4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvi 82 (154)
T d1pzga1 4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV 82 (154)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEE
Confidence 455689999997 9999999988887774589998875433222222111 1111222222222334568999999
Q ss_pred ccCCCCcccc---cCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEcc
Q 027129 104 LACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147 (228)
Q Consensus 104 ~a~~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss 147 (228)
++|....... .......+..|....+.+++.+.+++. -++.+-|
T Consensus 83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9986543221 124567788999999999999999886 3443333
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.31 E-value=7.2e-06 Score=57.22 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=74.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
++||.|+|| |++|..++..|+..+- .+++++++..........++. ..........|. .+..++|+||.++
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvita 82 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVICA 82 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEECC
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEEec
Confidence 579999997 9999999999998872 589999984332211111111 112233334332 4566899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
|... .........+..|....+.+++.+.+++. .++.+|
T Consensus 83 g~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 83 GANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp SCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred cccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 8533 33345567788899999999999998875 455544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.30 E-value=1.8e-06 Score=59.16 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=52.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
|+|+|+|+ |.+|+.+++.|.+.| +.|+++++ .++..+.+........+.+|.++... .+.|.++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~----d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDI----DKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEES----CHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCcceecC----ChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 79999997 999999999999999 99999998 45555443332357889999998743 3688888754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.27 E-value=3.3e-06 Score=60.62 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=73.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCCchhhh----hhcC--CCce-EEEeccCCCcccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGSKDNLR----KWIG--HPRF-ELIRHDVTEPLLI 96 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~~~~~----~~~~--~~~~-~~~~~d~~~~~~~ 96 (228)
++..+|.|+||+|.||.+++-.|....- -.+++++... ....+. ++.. .... ..+..+-....+.
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~--~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~ 99 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER--SFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE 99 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc--ccchhcchhhhhcccccccccCccccccchhhcc
Confidence 3345899999999999999999886421 2555555522 222111 1111 1122 2233333345667
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC--eEEEEcc
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST 147 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--r~i~~Ss 147 (228)
+.|+||-.+|. +..........++.|....+.+.+.+.++ +. +++.+|-
T Consensus 100 ~aDvVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 100 DVDWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp TCSEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCceEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 99999999985 34445666788899999999999999985 32 5666653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.25 E-value=1.1e-05 Score=55.90 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=71.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCC----CceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+||.|+|+ |.+|..++-.|+..+- .+++++++..........++.+. .......+ +..+..++|+|+.+||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--DYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--cHHHhCCCceEEEeccc
Confidence 57899997 9999999999998863 58999998666544333333221 12233222 23456789999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
.. ....+....++.|....+.+++.+.+++. .++.+|
T Consensus 79 ~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 79 NR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred cc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 42 22355567789999999999999999875 345444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.25 E-value=8.9e-06 Score=56.32 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=70.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|||.|+|| |.+|..++..|+..+- .++++++++..........+.. .....+...+. .....++|+|+.++|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 78999997 9999999999998863 6999999855432222111111 12233332221 235678999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 140 (228)
... .........++.|....+.+++.+.+++.
T Consensus 79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p 110 (142)
T d1guza1 79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSK 110 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 533 22344567788999999999999988775
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.23 E-value=4e-06 Score=58.10 Aligned_cols=110 Identities=15% Similarity=0.047 Sum_probs=72.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|||.|+|+ |.+|.+++-.|..++- .++++++++.........++. -.........+ ..++..+.|+||-.||
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~-d~~~~~~adiVvitag 78 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA-DYSLLKGSEIIVVTAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEES-CGGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCC-CHHHhccccEEEEecc
Confidence 78999996 9999999999988763 689999884322211111111 11112222221 1246778999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
... ....+....++.|......+.+.+.+++. .++.+|
T Consensus 79 ~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 79 LAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred ccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 533 33345567788999999999999998875 344444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=6.9e-06 Score=56.75 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=72.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhc----CCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
|||.|+|+ |.+|..++..|+..+- .++++++++.........++. -.........| ..+..+.|+||.+||.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 78999997 9999999998888763 689999984332211111111 11233344333 3456789999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEE
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~ 145 (228)
.. .........+..|....+.+++.+.+++. -++.+
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aiviv 114 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEE
Confidence 43 22344567778899999999999998875 34433
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=2.8e-06 Score=59.83 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=70.0
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCCchhhhhh----cC--CCceEEEe-ccCCCcccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGSKDNLRKW----IG--HPRFELIR-HDVTEPLLIE 97 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~~~~~~~----~~--~~~~~~~~-~d~~~~~~~~ 97 (228)
..|||.|+||+|++|++++-.|...+- ....++.. ....+..... .. ......+. .+-....+.+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 457999999999999999999987641 11222222 1122222111 11 12222222 2323346679
Q ss_pred ccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC--eEEEEcc
Q 027129 98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST 147 (228)
Q Consensus 98 ~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--r~i~~Ss 147 (228)
.|+||.++|.. .....+....+..|....+.+.+.+.++ +. .++.+|.
T Consensus 81 advViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 81 ADYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ccEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999854 3334556677899999999999999885 33 4555553
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.16 E-value=1.1e-05 Score=55.74 Aligned_cols=110 Identities=14% Similarity=0.001 Sum_probs=74.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCc--hhhhhhc----CCCceEEEeccCCCcccCCccEEEEccC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK--DNLRKWI----GHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~--~~~~~~~----~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
||.|+||+|.+|..++-.|..++- .++++++....... ....++. -.........| ..+..+.|+|+.+||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~--~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC--HHHhhhcCEEEEecc
Confidence 799999999999999999998873 57888886322111 1111111 12233333333 334578999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
... ....+....++.|....+.+.+.+.+++. .++.+|-
T Consensus 80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 533 33355677889999999999999998875 4555543
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=98.15 E-value=1.2e-05 Score=57.85 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC-CCCCCc----hhhhh-hcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSK----DNLRK-WIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~----~~~~~-~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|+||.|.||||++|+.|++.|.+....++..+.. ...+.. ..... +...........+..+....++|+++.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 7899999999999999999999885466655532 111111 11111 11112223333333333456789999876
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
.. .....+.....+.++++|-.|+..-+
T Consensus 81 p~------------------~~s~~~~~~~~~~~~~vIDlSadfRl 108 (179)
T d2g17a1 81 AH------------------EVSHDLAPQFLQAGCVVFDLSGAFRV 108 (179)
T ss_dssp CH------------------HHHHHHHHHHHHTTCEEEECSSTTSS
T ss_pred cc------------------hhHHHHhhhhhhcCceeecccccccc
Confidence 41 11123444556677789988887543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.12 E-value=1.2e-05 Score=56.63 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=75.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
.+||.|+|+ |.+|..++-.|...+- .++++++++.........++.+ .........| ..+..+.|+|+..|
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVitA 96 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVVTA 96 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEEec
Confidence 579999996 9999999999999873 5899999843322211111111 1122222222 34567899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|... ....+....++.|....+.++..+.+.+. -+|.+|-
T Consensus 97 g~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 97 GVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8543 22355567788999999999999998875 3555554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.09 E-value=1.2e-05 Score=55.65 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=72.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC----CCceEEEeccCCCcccCCccEEEEccCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.||.|+|+ |.+|.+++-.|..++- .+++++++..........++.. .........+.. .+..+.|+||.+||.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence 47999997 9999999999998873 6899999843322211111111 112333333322 345689999999985
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
.. .........++.|....+.++..+.+++. .++.+|
T Consensus 80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 32 33355567789999999999999999876 344444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.07 E-value=1.5e-05 Score=55.19 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=67.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-----CCceEEE-eccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELI-RHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~d~~~~~~~~~D~vi~~a~ 106 (228)
+||.|+|+ |.+|.+++-.|...+-.++.+++...........++.. .....+. ..| -....+.|+||-+||
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d--~~~~~~advvvitag 78 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN--YADTANSDVIVVTSG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc--HHHhcCCCEEEEeee
Confidence 68999996 99999999998888745899998854432222222211 1122222 122 224568999999998
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEE
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~ 145 (228)
... .........++.|....+.++..+.+++. -++.+
T Consensus 79 ~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aiviv 116 (142)
T d1uxja1 79 APR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 116 (142)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEE
T ss_pred ccC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEE
Confidence 543 22344456678899999999999988775 34433
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=5.5e-06 Score=58.44 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=72.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcC---C--CceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG---H--PRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~---~--~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
..||.|+|+ |.+|..++..|...+- .++++++++.........++.. . ........| ..+..+.|+||.+|
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvita 95 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVIITA 95 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc--hhhhccccEEEEec
Confidence 458999996 9999999999998873 5899998843322211112211 1 112222223 23456899999999
Q ss_pred CCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEcc
Q 027129 106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST 147 (228)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~Ss 147 (228)
|.... ...+....++.|....+.++..+.+++. .++.+|.
T Consensus 96 g~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 85432 2344556678899999999999888775 4555554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.05 E-value=2.2e-05 Score=54.38 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.|||.|.||||++|+.+++.|.+.+ ..++..+......... .. ...-++...+.....+.++|+++.+++.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~-i~----~~~~~~~~~~~~~~~~~~~d~vf~a~p~-- 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR-MG----FAESSLRVGDVDSFDFSSVGLAFFAAAA-- 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE-EE----ETTEEEECEEGGGCCGGGCSEEEECSCH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc-ee----eccccchhccchhhhhccceEEEecCCc--
Confidence 5899999999999999999987543 2577766543222111 10 1112333334444556689999877641
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcccee
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~ 150 (228)
.....+...+.+.++++|=.|+..-
T Consensus 75 ----------------~~s~~~~~~~~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 75 ----------------EVSRAHAERARAAGCSVIDLSGALE 99 (144)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEETTCTTT
T ss_pred ----------------chhhhhccccccCCceEEeechhhc
Confidence 1123444556677778888888743
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.03 E-value=3.6e-05 Score=53.62 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcC-----CCceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.+||.|+|+ |.+|..++..|...+-.++.++++..........++.. .........+ ......+.|+||.++|
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag 80 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAG 80 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEecc
Confidence 468999996 99999999877777656899999854432222211111 1122222221 2345678999999998
Q ss_pred CCCccccc---CCchhhHHhhHHHHHHHHHHHHHcCC-e-EEEEc
Q 027129 107 PASPIFYK---YNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTS 146 (228)
Q Consensus 107 ~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~-r-~i~~S 146 (228)
........ .+....++.|....+.+++.+.+++. - ++.+|
T Consensus 81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 65432211 23456789999999999999998876 3 44443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.97 E-value=1.6e-05 Score=55.82 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC------CeEEEEcCCCCCCchhhhhh------cCCCceE-EEeccCCCcccCCc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGSKDNLRKW------IGHPRFE-LIRHDVTEPLLIEV 98 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~~~~~~~~------~~~~~~~-~~~~d~~~~~~~~~ 98 (228)
.|||.|+||+|.+|.+++-.|...+- -.+++++.. +..+..+.+ ....... ....+-......+.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 47999999999999999999876431 245555542 222222111 1112222 22223233456789
Q ss_pred cEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHc-CC--eEEEEc
Q 027129 99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS 146 (228)
Q Consensus 99 D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--r~i~~S 146 (228)
|+||-++|... .........++.|....+.+...+.++ +. .+|.+|
T Consensus 81 dvVVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 81 DVAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp SEEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred eEEEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 99999998543 333445567899999999999998775 44 344454
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.96 E-value=1.6e-05 Score=55.16 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=70.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcCCCCCCchhhhhhc-----CCCceEEEeccCCCcccCCccEEEEccC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
|||.|+|+ |.+|..++-.|+..+ ..++++++++..+......++. ..........| .....++|+||-+||
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d--~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND--WAALADADVVISTLG 78 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC--HHHhccccEEEEecc
Confidence 78999995 999999999999876 2689999884332211111111 11122333333 234678999999998
Q ss_pred CCCcccc--cCCchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 107 PASPIFY--KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 107 ~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
....... ..+....++.|....+.+++.+.+++. -+|.+|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5432111 122345678899999999999998876 344444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.94 E-value=2.2e-05 Score=54.39 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=54.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC---CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
|||.|.||||++|+.+++.|++... .++..+..+...... ..... .............+.++|+||.+...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~--~~~~~--~~~~~~~~~~~~~~~~~DvvF~alp~-- 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA--PNFGK--DAGMLHDAFDIESLKQLDAVITCQGG-- 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC--CCSSS--CCCBCEETTCHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc--cccCC--cceeeecccchhhhccccEEEEecCc--
Confidence 7899999999999999999886531 466655443222111 00000 11111111111234689999988741
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCe--EEEEcccee
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r--~i~~Ss~~~ 150 (228)
.....+...+.+.+.+ +|=.|+..-
T Consensus 75 ----------------~~s~~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 75 ----------------SYTEKVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp ----------------HHHHHHHHHHHHTTCCSEEEESSSTTT
T ss_pred ----------------hHHHHHhHHHHHcCCceEEEeCCcccc
Confidence 1123555666677765 566677643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.91 E-value=0.00012 Score=48.31 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=68.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS 109 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~ 109 (228)
.++++|+|+|+ |-+|..-++.|++.| .+|++++... ......+....++++.+.......+.+.+.|+.+.+
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~g-a~v~v~~~~~---~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~--- 81 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAG-ARLTVNALTF---IPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD--- 81 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTT-BEEEEEESSC---CHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS---
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEeccC---ChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC---
Confidence 44899999995 999999999999999 8898887632 233444445567899998888888888999887653
Q ss_pred cccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
+ -.....+.+.|++.+ .+|++..
T Consensus 82 ------d--------~~~n~~i~~~a~~~~-ilVNv~D 104 (113)
T d1pjqa1 82 ------D--------DTVNQRVSDAAESRR-IFCNVVD 104 (113)
T ss_dssp ------C--------HHHHHHHHHHHHHTT-CEEEETT
T ss_pred ------C--------HHHHHHHHHHHHHcC-CEEEeCC
Confidence 0 111235666777765 3565543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.88 E-value=6.9e-06 Score=59.42 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
|||.|+||+|.+|+++++.|.++| ++|.+.+|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG-HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCH
Confidence 789999989999999999999999 9999999943
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.87 E-value=1.7e-05 Score=56.55 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=46.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCC-ceEEEeccCCCc-----ccCCccEEEEc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTEP-----LLIEVDQIYHL 104 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-----~~~~~D~vi~~ 104 (228)
+.|+|+|+|| |++|+.+++.|.++| ++|++.+| +.+....+.... .......+.... .....|.++.+
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr----~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACR----TLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTT-CEEEEEES----CHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEEC----ChHHHHHHHhcccccccccccccchhhhHhhhhccceeEee
Confidence 3689999997 999999999999999 99999999 454444443322 233333333222 12367777765
Q ss_pred c
Q 027129 105 A 105 (228)
Q Consensus 105 a 105 (228)
.
T Consensus 75 ~ 75 (182)
T d1e5qa1 75 I 75 (182)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=3.4e-05 Score=49.19 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 110 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~ 110 (228)
++|+|+|+|. |--|.++++.|.+.| .+|++.+.+..... ...+. ....+...........+.|.||..-|+...
T Consensus 4 ~~K~v~ViGl-G~sG~s~a~~L~~~g-~~v~~~D~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~d~vi~SPGi~~~ 77 (93)
T d2jfga1 4 QGKNVVIIGL-GLTGLSCVDFFLARG-VTPRVMDTRMTPPG--LDKLP--EAVERHTGSLNDEWLMAADLIVASPGIALA 77 (93)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESSSSCTT--GGGSC--TTSCEEESBCCHHHHHHCSEEEECTTSCTT
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHHCC-CEEEEeeCCcCchh--HHHHh--hccceeecccchhhhccCCEEEECCCCCCC
Confidence 4789999997 889999999999999 99999988443221 11111 234444444444445578999987664221
Q ss_pred ccccCCchhhHHhhHHHHHHHHHHHHHcCCeEE
Q 027129 111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143 (228)
Q Consensus 111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i 143 (228)
..+++.+++.++.+|
T Consensus 78 ------------------~~~~~~a~~~gi~ii 92 (93)
T d2jfga1 78 ------------------HPSLSAAADAGIEIV 92 (93)
T ss_dssp ------------------SHHHHHHHHTTCEEE
T ss_pred ------------------CHHHHHHHHcCCCeE
Confidence 145566777776654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=1.1e-05 Score=56.99 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=31.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
|||+|+|+ |.+|..++..|.+.| ++|.+++|...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 89999997 999999999999999 99999999554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.77 E-value=8.2e-06 Score=57.62 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=50.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.++++++|+|+ |-+|+.+++.|...|..++++..|. .++...+...-.......+-......+.|+||.+.+.
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt----~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRT----YERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSS----HHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCc----HHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC
Confidence 45899999997 9999999999999985579999883 3333332221123444433333344589999999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.72 E-value=4.5e-05 Score=54.13 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
||+|+|+| .|.+|..+++.|.+.|. .+|++.++ +.+..........++....+........+|+||.+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDI----NPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECS----CHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEEC----ChHHHHHHHHhhcchhhhhhhhhhhccccccccccC
Confidence 67899998 59999999999999882 48899888 444443333333344444444444455789888766
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=0.00016 Score=48.98 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=50.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
|+++|+|. |.+|+.+++.|.+.| +.|++++. ..+..+.+.. .....+.+|.++... .++|.||-+.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g-~~vvvid~----d~~~~~~~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDI----NEEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCCEEEES----CHHHHHHTTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEecC----cHHHHHHHHH-hCCcceeeecccchhhhccCCccccEEEEEc
Confidence 57899986 999999999999999 99999988 5555555433 345677888888743 3688877655
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=7.5e-05 Score=52.62 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=58.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEE-cCCCCCCc-hhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
++.+||.|.|++|.+|+.+++.+.+....++++. +|...... .................+-.+.....+|+||.+.-
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~- 80 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR- 80 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-
Confidence 3468999999999999999999988753555444 33222111 11111111111111112223344568999999862
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
-.++...++.|.+.++.+|.=+|
T Consensus 81 -----------------p~~~~~~~~~a~~~~~~~ViGTT 103 (162)
T d1diha1 81 -----------------PEGTLNHLAFCRQHGKGMVIGTT 103 (162)
T ss_dssp -----------------HHHHHHHHHHHHHTTCEEEECCC
T ss_pred -----------------HHHHHHHHHHHHhccceeEEecC
Confidence 23345777888888888764433
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.64 E-value=7e-05 Score=52.84 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=43.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||.|+|. |.+|..+++.|.+.| ++|++.+|+ .+..........++....+. ....++|+||-+.
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g-~~V~~~d~~----~~~~~~a~~~~~~~~~~~~~--~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRG-HYLIGVSRQ----QSTCEKAVERQLVDEAGQDL--SLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC----HHHHHHHHHTTSCSEEESCG--GGGTTCSEEEECS
T ss_pred CEEEEEee-cHHHHHHHHHHHHCC-CEEEEEECC----chHHHHHHHhhccceeeeec--ccccccccccccC
Confidence 78999985 999999999999999 999999994 33333222222222222221 2446899988654
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.00016 Score=48.80 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=50.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCccc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF 112 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~~ 112 (228)
|||.|.|++|-+|+.+++.+.+.+ +++.+.... . . ...+.++|+||.+.. |
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~-~~l~~~id~---~-----------~---------~~~~~~~DVvIDFS~---p-- 51 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKG-HELVLKVDV---N-----------G---------VEELDSPDVVIDFSS---P-- 51 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEET---T-----------E---------EEECSCCSEEEECSC---G--
T ss_pred CEEEEECCCCHHHHHHHHHHhcCC-CeEEEEECC---C-----------c---------HHHhccCCEEEEecC---H--
Confidence 789999999999999999888888 777654220 0 0 112346899999873 1
Q ss_pred ccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
.++...+++|.++++.+|.=+|
T Consensus 52 -------------~~~~~~l~~~~~~~~p~ViGTT 73 (128)
T d1vm6a3 52 -------------EALPKTVDLCKKYRAGLVLGTT 73 (128)
T ss_dssp -------------GGHHHHHHHHHHHTCEEEECCC
T ss_pred -------------HHHHHHHHHHHhcCCCEEEEcC
Confidence 1235777888888888664333
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.59 E-value=2.5e-05 Score=54.45 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=36.0
Q ss_pred hhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
...+.+++|.|+||.|.+|+.+++.|.+.| |+|.+.+|...
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~ 44 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDW 44 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCG
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccc
Confidence 344568899999999999999999999999 99999999543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=5.8e-05 Score=53.67 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=50.4
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..++|+|+|.|+ |..+++++-.|.+.| .+|+++.|+..+..+....+.....+... +..+....++|+||++...+
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g-~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSSG 90 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSCG
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccc-eEEEeccchHHHHHHHHHHHhhccccccc--ccccccccccceeecccccC
Confidence 345899999996 999999999999999 78999999433222222222222233333 33344456799999987543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.56 E-value=0.00046 Score=48.02 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=55.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcC--CCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI 111 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~ 111 (228)
||.|.||||++|+.+++.|.+.. ..++..+...+.... . .....-.....+..+..+.+.|+++.+++..
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~----~-~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~--- 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK----S-LKFKDQDITIEETTETAFEGVDIALFSAGSS--- 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC----E-EEETTEEEEEEECCTTTTTTCSEEEECSCHH---
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc----c-ccccCCcccccccchhhhhhhhhhhhccCcc---
Confidence 79999999999999999887774 134444433111110 0 0001122333344455666888888776421
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceec
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y 151 (228)
........+.+.++++|=.|+..-+
T Consensus 75 ---------------~s~~~~~~~~~~~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 75 ---------------TSAKYAPYAVKAGVVVVDNTSYFRQ 99 (154)
T ss_dssp ---------------HHHHHHHHHHHTTCEEEECSSTTTT
T ss_pred ---------------chhhHHhhhccccceehhcChhhhc
Confidence 1123444455667788888887544
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=2.9e-05 Score=55.52 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=28.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|+||.|.||||++|+.+++.|.+....++..+..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 7899999999999999999998876466666644
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.49 E-value=0.0001 Score=52.44 Aligned_cols=76 Identities=13% Similarity=0.274 Sum_probs=50.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
..++++|+|.|+ |..+++++..|...+ .+|+++.|+..+.......+.....+.....| +....++|+||++...+
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhc--cccccccceeeeccccc
Confidence 345899999985 888999999999877 89999999533222222222222334444433 33456899999997544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=2.8e-05 Score=55.46 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=47.8
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC--cccCCccEEEEccC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE--PLLIEVDQIYHLAC 106 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~D~vi~~a~ 106 (228)
.+.+.+|+|+||+|.+|...++.+...| .+|+++++++.+ .+..+++....-+++ .|..+ ....++|+||.+.|
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~-~~~~~~lGa~~~i~~--~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEK-LALPLALGAEEAATY--AEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGG-SHHHHHTTCSEEEEG--GGHHHHHHHTTSEEEEEECSC
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccc-cccccccccccc-cccccccccceeeeh--hhhhhhhhccccccccccccc
Confidence 3457899999999999999999999999 899999884332 223333221111111 11111 12247999999875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.40 E-value=0.00021 Score=50.46 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=46.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~ 108 (228)
+.+++|+|+|+ |..|++++..|...|..+|+++.|+ .++.+.+........+. .....++|+|||+...+
T Consensus 15 ~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~----~~ka~~L~~~~~~~~~~----~~~~~~~DliINaTpiG 84 (167)
T d1npya1 15 NKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARN----VKTGQYLAALYGYAYIN----SLENQQADILVNVTSIG 84 (167)
T ss_dssp CTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSC----HHHHHHHHHHHTCEEES----CCTTCCCSEEEECSSTT
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeccc----HHHHHHHHHhhhhhhhh----cccccchhhheeccccC
Confidence 35789999996 9999999999999996689999994 33332222111122221 22234789999986543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.37 E-value=0.00033 Score=50.10 Aligned_cols=72 Identities=11% Similarity=0.013 Sum_probs=48.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC---c-----ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---P-----LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~-----~~~~~D~v 101 (228)
+++.+|+|+||+|.+|...++.....| .+|++++++ .++.........-..+..+-.+ . ...++|+|
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~----~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v 102 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGS----DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCY 102 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESS----HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCC----HHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCcee
Confidence 558899999999999999999999999 899999983 3333222222222222222111 1 12379999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
+++.|
T Consensus 103 ~D~vG 107 (182)
T d1v3va2 103 FDNVG 107 (182)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 99886
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.00037 Score=50.77 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=29.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|||.|+| .|++|..++..|.+.| ++|++++.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g-~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARG-HEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCC-CcEEEEeCC
Confidence 7899997 5999999999999999 999999983
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.36 E-value=0.00014 Score=51.98 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=48.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc----ccCCccEEEEcc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLA 105 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~D~vi~~a 105 (228)
+.+.+|||+||+|.+|...++.....| .+|+++.+++. ..+.++.+....-++. ..+..+. ...++|+||.+.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~G-a~Viat~~s~~-k~~~~~~lGa~~vi~~-~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRG-YTVEASTGKAA-EHDYLRVLGAKEVLAR-EDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCTT-CHHHHHHTTCSEEEEC-C---------CCSCCEEEEEECS
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcC-CceEEecCchH-HHHHHHhcccceeeec-chhHHHHHHHhhccCcCEEEEcC
Confidence 446799999999999999999998999 99999988433 3344444322222221 1111111 223799999988
Q ss_pred C
Q 027129 106 C 106 (228)
Q Consensus 106 ~ 106 (228)
|
T Consensus 107 g 107 (176)
T d1xa0a2 107 G 107 (176)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=97.31 E-value=0.00045 Score=46.00 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.9
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.+...+.++++|.|| |++|-.++..|.+.| .+|+++.+.+.
T Consensus 24 ~~~~~~~~~vvIIGg-G~iG~E~A~~l~~~g-~~Vtli~~~~~ 64 (121)
T d1d7ya2 24 QAGLRPQSRLLIVGG-GVIGLELAATARTAG-VHVSLVETQPR 64 (121)
T ss_dssp HHHCCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred HHhhhcCCeEEEECc-chhHHHHHHHhhccc-ceEEEEeeccc
Confidence 344555789999996 999999999999999 99999988654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00013 Score=44.56 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=32.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
+++++++|+||+|.+|...++.+...| .+|+++.++
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G-~~Vi~~t~s 65 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGR 65 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESC
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcC-CeEEEEECC
Confidence 447899999999999999999988999 899999883
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.25 E-value=0.00023 Score=51.10 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=28.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+..||.|.||||+.|+.|++.|.+....++..+..
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 35699999999999999999998876466666643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0003 Score=49.90 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=32.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.++.+|+|+||+|.+|...++.+...| .+|++++++
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~ 62 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGT 62 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred CCCCEEEEEeccccccccccccccccC-ccccccccc
Confidence 457899999999999999999999999 899999883
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.19 E-value=0.0011 Score=46.51 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=30.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|+| +|.+|...++.+...| .+|+++++
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~G-a~vi~v~~ 58 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYG-AFVVCTAR 58 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhc-ccccccch
Confidence 4478999998 6899999999998899 89999998
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.18 E-value=0.00024 Score=50.25 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=48.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~vi~~ 104 (228)
+.+.+|||+||+|.+|...++.....| .+|+++.++.+ ..+.++++....-+ ...|.... ...+.|+||.+
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~G-a~Viat~~s~~-k~~~~~~lGad~vi--~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRG-YDVVASTGNRE-AADYLKQLGASEVI--SREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHT-CCEEEEESSSS-THHHHHHHTCSEEE--EHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcC-CceEEEecCHH-HHHHHHhhcccceE--eccchhchhhhcccCCCceEEEec
Confidence 345689999999999999999988899 99999999433 33344443322111 11222211 12369999998
Q ss_pred cC
Q 027129 105 AC 106 (228)
Q Consensus 105 a~ 106 (228)
.|
T Consensus 98 vg 99 (167)
T d1tt7a2 98 VG 99 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 76
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00081 Score=47.81 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=47.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCC---c-----ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---P-----LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~-----~~~~~D~v 101 (228)
.++.+|+|+||+|.+|...++.+...| .+|++++++ .++...+.+...-..+..+-.+ . ...++|++
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~----~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v 98 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGS----DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVV 98 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESS----HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecc----cccccccccccccccccCCccCHHHHHHHHhCCCCEEEE
Confidence 447899999999999999999999999 899998883 2222222222111222221111 1 12369999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
|.+.|
T Consensus 99 ~d~~g 103 (183)
T d1pqwa_ 99 LNSLA 103 (183)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 99886
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.10 E-value=0.00072 Score=46.77 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=44.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||.++|+ |-+|.++++.|++.+.++|++.+|+ .+....+.....+.... + .....++|+||-+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~----~~~~~~l~~~~~~~~~~-~--~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRG----AEKRERLEKELGVETSA-T--LPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSS----HHHHHHHHHHTCCEEES-S--CCCCCTTSEEEECS
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCC----hhHHHHhhhhccccccc-c--cccccccceEEEec
Confidence 78999985 9999999999998876899999993 44433333222333322 1 22345689988654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00083 Score=47.77 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=45.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc---CCCc-ccCCccEEEEccC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD---VTEP-LLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d---~~~~-~~~~~D~vi~~a~ 106 (228)
+.+|+|+||+|.+|...++.....| .+|+++++++.+ .+.++.+. .-.++..+ .... .....|.++++.+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~G-a~Via~~~~~~k-~~~~~~lG---ad~vi~~~~~~~~~~l~~~~~~~vvD~Vg 105 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGREST-HEYLKSLG---ASRVLPRDEFAESRPLEKQVWAGAIDTVG 105 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT-CCEEEEESCGGG-HHHHHHHT---EEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred CCcEEEEEccccchHHHHHHHHHcC-CCeEEEecchhH-HHHHHhhc---cccccccccHHHHHHHHhhcCCeeEEEcc
Confidence 4589999999999999999999999 999999984332 22333321 12222222 1111 1124788888875
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.96 E-value=0.017 Score=38.43 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..++|.|+||+ +..|..+++.|...+.++|+.+... .+... +... ..++.+ ....+|.++-+..
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~----~~~i~------G~~~-y~sl~d-lp~~vDlvvi~vp- 73 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK----EEEVQ------GVKA-YKSVKD-IPDEIDLAIIVVP- 73 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS----CSEET------TEEC-BSSTTS-CSSCCSEEEECSC-
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC----ccccC------CeEe-ecchhh-cCCCCceEEEecC-
Confidence 36899999998 9999999999877654699988662 11111 1121 112222 2246898887652
Q ss_pred CCcccccCCchhhHHhhHHHHHHHHHHHHHcCC-eEEEEccc
Q 027129 108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148 (228)
Q Consensus 108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-r~i~~Ss~ 148 (228)
-..+..+++.+.+.|+ .++.+|+.
T Consensus 74 -----------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 74 -----------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp -----------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred -----------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 2223466777878888 46777765
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00053 Score=48.67 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=47.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-----ccCCccEEEEc
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~D~vi~~ 104 (228)
+.+.+|+|+||+|.+|..+++.+...| .+|++++++..+ .+..+++....-+++...|+.+. .-.++|+|+.+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k-~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQK-AQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHH-HHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHH-HHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence 447899999999999999999999999 899999883222 22233332111122112222221 12368999998
Q ss_pred cC
Q 027129 105 AC 106 (228)
Q Consensus 105 a~ 106 (228)
.+
T Consensus 105 ~g 106 (179)
T d1qora2 105 VG 106 (179)
T ss_dssp SC
T ss_pred cc
Confidence 86
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.95 E-value=0.001 Score=47.11 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.|||.|+|+ |-+|..++..|.+.| ++|.+++|.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G-~~V~~~~r~ 33 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDID 33 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCC-CEEEEEECC
Confidence 389999996 999999999999999 999999993
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.94 E-value=0.004 Score=41.97 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=50.5
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCCCCcccc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFY 113 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~~~~~~~ 113 (228)
||.|.|++|-+|+.+++.+.+....++.+........ ......++|+||.+.-+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~--------------------~~~~~~~~DvvIDFS~p------ 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL--------------------SLLTDGNTEVVIDFTHP------ 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT--------------------HHHHTTTCSEEEECCCT------
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch--------------------hhhccccCCEEEEcccH------
Confidence 6899999999999999998887546666543211000 00112468999998731
Q ss_pred cCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 114 KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 114 ~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
..+...++.|.+.++.+|. +|++
T Consensus 55 ------------~~~~~~~~~~~~~~~~~Vi-GTTG 77 (135)
T d1yl7a1 55 ------------DVVMGNLEFLIDNGIHAVV-GTTG 77 (135)
T ss_dssp ------------TTHHHHHHHHHHTTCEEEE-CCCC
T ss_pred ------------HHHHHHHHHHHhcCCCEEE-eccc
Confidence 1224667888888888664 4443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.89 E-value=0.0076 Score=38.00 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=48.5
Q ss_pred cCCCEEEEecCcchhH-HHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG-~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
...+++.++|- |.+| ++|++.|.+.| +.|.+.++.... ..+.+.+ ..+.+..++..+. ..+.|.||...++
T Consensus 6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G-~~VsGSD~~~~~---~~~~L~~-~Gi~v~~g~~~~~-i~~~d~vV~S~AI 77 (96)
T d1p3da1 6 RRVQQIHFIGI-GGAGMSGIAEILLNEG-YQISGSDIADGV---VTQRLAQ-AGAKIYIGHAEEH-IEGASVVVVSSAI 77 (96)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHT-CEEEEEESCCSH---HHHHHHH-TTCEEEESCCGGG-GTTCSEEEECTTS
T ss_pred hhCCEEEEEEE-CHHHHHHHHHHHHhCC-CEEEEEeCCCCh---hhhHHHH-CCCeEEECCcccc-CCCCCEEEECCCc
Confidence 44789999985 5566 77899999999 999999985322 2222222 3566665554433 4678998887764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00037 Score=49.11 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=47.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.+.+.+|+|.|+ |.+|...++.+...| .++++++++.. ..+..+++....-++....+.......+.|++|.+.|.
T Consensus 28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~G-a~~i~~~~~~~-~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 28 AGPGKKVGVVGI-GGLGHMGIKLAHAMG-AHVVAFTTSEA-KREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSGG-GHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCCCEEEEecc-chHHHHHHHHhhccc-ccchhhccchh-HHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence 355889999986 889999999998899 88888887433 22333333221112111111111233479999999873
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0013 Score=46.97 Aligned_cols=78 Identities=8% Similarity=0.005 Sum_probs=49.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh---hhhhcCCCceEEEeccCCCc-----ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEP-----LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~d~~~~-----~~~~~D~v 101 (228)
.++++|+|+|+ |..|++++..|...|..+++++.|+....... ...+...........+..+. ....+|+|
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 45799999996 89999999999999877999999954432211 11111111222333333332 12479999
Q ss_pred EEccCCC
Q 027129 102 YHLACPA 108 (228)
Q Consensus 102 i~~a~~~ 108 (228)
||+...+
T Consensus 95 IN~Tp~G 101 (182)
T d1vi2a1 95 TNGTKVG 101 (182)
T ss_dssp EECSSTT
T ss_pred ccccCCc
Confidence 9997543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.0097 Score=36.91 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCEEEEecCcchhH-HHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG-~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
.|+|.++|- |.+| ++|++.|.+.| +.|.+.++......+.++ ...+.+..+. ......++|.||...++
T Consensus 1 ~~~ihfiGI-gG~GMs~LA~~L~~~G-~~VsGSD~~~~~~t~~L~----~~Gi~i~~gh-~~~~i~~~d~vV~SsAI 70 (89)
T d1j6ua1 1 HMKIHFVGI-GGIGMSAVALHEFSNG-NDVYGSNIEETERTAYLR----KLGIPIFVPH-SADNWYDPDLVIKTPAV 70 (89)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTT-CEEEEECSSCCHHHHHHH----HTTCCEESSC-CTTSCCCCSEEEECTTC
T ss_pred CcEEEEEeE-CHHHHHHHHHHHHhCC-CeEEEEeCCCChhHHHHH----HCCCeEEeee-cccccCCCCEEEEecCc
Confidence 378999985 5566 57899999999 999999985332222222 2356665442 22234579999987765
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0021 Score=47.34 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCEEEEecC----------------cchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-
Q 027129 31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93 (228)
Q Consensus 31 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 93 (228)
.+|+||||+| ||..|.+|++.+...| ++|+++.-...... ...+..+...-.+.
T Consensus 5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~G-a~V~li~g~~~~~~--------p~~~~~~~~~t~~~m 75 (223)
T d1u7za_ 5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRG-ANVTLVSGPVSLPT--------PPFVKRVDVMTALEM 75 (223)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTT-CEEEEEECSCCCCC--------CTTEEEEECCSHHHH
T ss_pred CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcC-CchhhhhcccccCc--------ccccccceehhhHHH
Confidence 3677777754 7999999999999999 99999877433211 12455544332221
Q ss_pred ------ccCCccEEEEccCCCCc
Q 027129 94 ------LLIEVDQIYHLACPASP 110 (228)
Q Consensus 94 ------~~~~~D~vi~~a~~~~~ 110 (228)
...+.|++|++|++...
T Consensus 76 ~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 76 EAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp HHHHHHHGGGCSEEEECCBCCSE
T ss_pred HHHHHhhhccceeEeeeechhhh
Confidence 23479999999987654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.0021 Score=41.85 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=46.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccC-------CccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~D~vi 102 (228)
+...||.|+|| |+||+-++....+.| +++++++.......... .-.++.+|..|.... ++|+|-
T Consensus 9 ~~~~kigIlGg-GQL~rMla~aA~~lG-~~v~v~d~~~~~PA~~v-------a~~~i~~~~~d~~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 9 PAATRVMLLGS-GELGKEVAIECQRLG-VEVIAVDRYADAPAMHV-------AHRSHVINMLDGDALRRVVELEKPHYIV 79 (111)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTT-CEEEEEESSTTCGGGGG-------SSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHCC-CEEEEEcCCCCCchhhc-------CCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence 34578999995 999999999999999 99999988433222111 225667777775422 468775
Q ss_pred E
Q 027129 103 H 103 (228)
Q Consensus 103 ~ 103 (228)
.
T Consensus 80 ~ 80 (111)
T d1kjqa2 80 P 80 (111)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0046 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=32.4
Q ss_pred hhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
++.+. ..+|+|.|+ |.+|.++++.|.+.|..++++++..
T Consensus 25 Q~kL~-~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 25 QEALK-DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHH-HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHh-CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCc
Confidence 34444 589999995 8899999999999998899998763
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.71 E-value=0.00099 Score=46.57 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|++|.++| .|-+|.++++.|++.| |+|.+.+|+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g-~~v~~~d~~ 33 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAG-YLLNVFDLV 33 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECSS
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCC-CeEEEEECc
Confidence 68999998 6999999999999999 999999983
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.66 E-value=0.0053 Score=43.02 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=41.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
+.+||.|.| +|.+|+.+++.|.+....+++++......... .......+-......++|+|+.+...
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~~~~~~~~~~~~D~Vvi~tp~ 68 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCMGS 68 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEEGGGGGGTTTTCSEEEECSCT
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------ccccccchhhhhhccccceEEEeCCC
Confidence 356899998 69999999999988654777776553332211 11222222222334579999987643
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.00022 Score=51.33 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=27.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.+|||+||+|.+|...++.....|...|+++++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~ 64 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 64 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccc
Confidence 789999999999999999988888455666655
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.0019 Score=45.30 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=47.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec-cCCCcccCCccEEEEccCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA 108 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~D~vi~~a~~~ 108 (228)
..+.+|+|+|+ |.+|...++.+...| .+|+++++++. ..+..+++....-++.... +.........|.++.+.+..
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G-~~vi~~~~~~~-k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMG-AETYVISRSSR-KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHT-CEEEEEESSST-THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhcc-ccccccccchh-HHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 44789999996 999999999888889 89999998543 3334444322111111111 11112234689999987643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.56 E-value=0.0019 Score=45.24 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~D~v 101 (228)
..+.+|+|+|++|.+|...+..+...|...|+++++++. ..+..+++. .-..+..+-.+. ...++|++
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-~~~~~~~~G---a~~~i~~~~~~~~~~~~~~~~~~~~d~v 101 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-AVEAAKRAG---ADYVINASMQDPLAEIRRITESKGVDAV 101 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-HHHHHHHHT---CSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh-hHHHHHHcC---CceeeccCCcCHHHHHHHHhhcccchhh
Confidence 346799999999999999999998888568888887321 122222221 112333222221 11359999
Q ss_pred EEccC
Q 027129 102 YHLAC 106 (228)
Q Consensus 102 i~~a~ 106 (228)
|.++|
T Consensus 102 id~~g 106 (170)
T d1jvba2 102 IDLNN 106 (170)
T ss_dssp EESCC
T ss_pred hcccc
Confidence 99986
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.55 E-value=0.0026 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=30.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+.+.+|+|+|+ |.+|...++.+...|..+|+++++
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~ 61 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAG 61 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEES
T ss_pred CCCCEEEEECC-Cccchhheeccccccccccccccc
Confidence 44789999997 899999999999999448999988
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.49 E-value=0.0011 Score=46.15 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=43.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||-|+| .|.+|+.+++.|++.| ++|++.+| +.+....+... .... .+-..+...++|+||-|.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G-~~V~~~d~----~~~~~~~~~~~-~~~~--~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAG-YSLVVSDR----NPEAIADVIAA-GAET--ASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTT-CEEEEECS----CHHHHHHHHHT-TCEE--CSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCC-CeEEEEeC----CcchhHHHHHh-hhhh--cccHHHHHhCCCeEEEEc
Confidence 7899998 6999999999999999 99999999 34433333221 1111 111122334688888775
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.45 E-value=0.0026 Score=42.80 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=34.3
Q ss_pred hhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
+.....++++|.|| |++|-.++..|.+.| .+|+++.+.+.
T Consensus 30 ~~~~~~k~v~VIGg-G~iG~E~A~~l~~~g-~~Vtvie~~~~ 69 (133)
T d1q1ra2 30 RQLIADNRLVVIGG-GYIGLEVAATAIKAN-MHVTLLDTAAR 69 (133)
T ss_dssp HTCCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred HhhccCCEEEEECC-chHHHHHHHHHHhhC-cceeeeeeccc
Confidence 34455789999996 999999999999999 99999988544
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.44 E-value=0.0013 Score=43.71 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=32.7
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.....++++|.|| |++|-.++..|.+.| .+|+++.|.+
T Consensus 28 ~~~~~~~vvIiGg-G~iG~E~A~~l~~~g-~~Vtlv~~~~ 65 (122)
T d1xhca2 28 SIENSGEAIIIGG-GFIGLELAGNLAEAG-YHVKLIHRGA 65 (122)
T ss_dssp HHHHHSEEEEEEC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred HhhcCCcEEEECC-cHHHHHHHHHhhccc-ceEEEEeccc
Confidence 3444689999996 999999999999999 9999998843
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.43 E-value=0.0027 Score=41.73 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=31.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
...++++|.|| |++|-.++..|.+.| .+|+++.|.+
T Consensus 20 ~~p~~v~IiGg-G~iG~E~A~~l~~~g-~~Vtlv~~~~ 55 (117)
T d1onfa2 20 KESKKIGIVGS-GYIAVELINVIKRLG-IDSYIFARGN 55 (117)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHTTT-CEEEEECSSS
T ss_pred CCCCEEEEECC-chHHHHHHHHHHhcc-ccceeeehhc
Confidence 34689999996 999999999999999 9999999854
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.43 E-value=0.0061 Score=42.79 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=45.6
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEe-ccCCCc--------ccCCcc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP--------LLIEVD 99 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~d~~~~--------~~~~~D 99 (228)
.+.+.+|+|+|+ |.+|...+..+...+..+|++++++..+ .+..++. .....+. .+..+. ...+.|
T Consensus 26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k-~~~a~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 26 VTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK-FAKAKEV---GATECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHH-HHHHHHh---CCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence 345789999998 6699999999998875788888883222 2222222 2222222 122121 113799
Q ss_pred EEEEccC
Q 027129 100 QIYHLAC 106 (228)
Q Consensus 100 ~vi~~a~ 106 (228)
++|.+.|
T Consensus 101 ~vid~~G 107 (176)
T d2jhfa2 101 FSFEVIG 107 (176)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9999987
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.40 E-value=0.0028 Score=42.00 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=31.2
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
..++++|.|| |++|..++..|.+.| .+|+++.+.+
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g-~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAG-KKVTVIDILD 63 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccc-eEEEEEEecC
Confidence 4689999986 999999999999999 9999998743
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0022 Score=44.16 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=50.5
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
.++|+|. |-+|+.+++.|.+.| +.|++++..+........... ...+.++.+|.+++.. .++|.||-+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 4788885 999999999999999 999999874322222222222 2468999999998743 3688888765
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.37 E-value=0.0062 Score=42.17 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=37.9
Q ss_pred CCCEEEEecCcchhHHHHHHHHHh-cCCCeEEEEcCCCCCCchhhhhhcCCCceEEEec--c--CCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH--D--VTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--d--~~~~~~~~~D~vi~~a 105 (228)
+.+|+.|+| +|.+|+.+...+++ ....+++++...+.......... ...+..... | +.+..+.++|+||.+.
T Consensus 3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~--~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ--RMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH--HTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh--hcCCcccccceeeeeecccccccCEEEEcC
Confidence 357999999 89999975544444 33357777743222222111111 112333222 1 1123445799999764
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.011 Score=47.61 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=33.8
Q ss_pred CcchhhhccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 22 ~~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+.+...+. ..||||+|+ |.+|.++++.|...|..++++++..
T Consensus 28 ~e~~~~~l~-~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 28 TESLQFLLD-TCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp SSHHHHHHH-HCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred hHHHHHHHh-cCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 344444444 689999997 7799999999999996689888763
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.32 E-value=0.0032 Score=41.22 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++|.|| |++|-.++..|.+.| .+|+++.|.+
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G-~~Vtlve~~~ 55 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFG-TKVTILEGAG 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCeEEEECC-Cccceeeeeeecccc-cEEEEEEecc
Confidence 489999996 999999999999999 9999998843
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.30 E-value=0.0007 Score=46.90 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=42.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||.++| +|-+|+++++.|++.+ +++++..|+ .+....+.....+... .-.+....+.|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~-~~i~v~~r~----~~~~~~l~~~~g~~~~--~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTP-HELIISGSS----LERSKEIAEQLALPYA--MSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSS-CEEEEECSS----HHHHHHHHHHHTCCBC--SSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCC-CeEEEEcCh----HHhHHhhccccceeee--chhhhhhhccceeeeec
Confidence 7899998 6999999999999999 999999884 3333322111112111 11112234799888765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.24 E-value=0.0016 Score=46.78 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=32.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
++.|+||.|+|| |-.|.+++..|.++| ++|.+..|+
T Consensus 4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g-~~V~l~~r~ 39 (189)
T d1n1ea2 4 LLYLNKAVVFGS-GAFGTALAMVLSKKC-REVCVWHMN 39 (189)
T ss_dssp CCCEEEEEEECC-SHHHHHHHHHHHTTE-EEEEEECSC
T ss_pred cceeceEEEECC-CHHHHHHHHHHHHcC-CeEEEEEec
Confidence 455789999995 999999999999999 999999983
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.23 E-value=0.0095 Score=41.88 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=46.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc---------ccCCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~D~ 100 (228)
+.+.+|+|+|+ |.||...+..+...|...|++.++++. ..+..+++ ..-+.+.....+. ...++|+
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-r~~~a~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-KFPKAKAL---GATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-GHHHHHHT---TCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH-HHHHHHHh---CCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 44789999985 999999999999999557888877322 22233332 1222333222221 1237999
Q ss_pred EEEccC
Q 027129 101 IYHLAC 106 (228)
Q Consensus 101 vi~~a~ 106 (228)
+|.++|
T Consensus 102 vie~~G 107 (174)
T d1e3ia2 102 SLDCAG 107 (174)
T ss_dssp EEESSC
T ss_pred EEEecc
Confidence 999997
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.22 E-value=0.0059 Score=43.04 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=44.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
++|+|+|+|+ |+.+++++..|...+ +|+++.|+..+..+....+ ........+..+.........|++|++...
T Consensus 17 ~~k~vlIlGa-GG~arai~~aL~~~~--~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177)
T d1nvta1 17 KDKNIVIYGA-GGAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CCCEEEEECC-cHHHHHHHHHHcccc--ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence 4799999995 889999999997665 9999999433222111111 111111112222222334578999998754
Q ss_pred C
Q 027129 108 A 108 (228)
Q Consensus 108 ~ 108 (228)
+
T Consensus 94 g 94 (177)
T d1nvta1 94 G 94 (177)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.21 E-value=0.003 Score=45.14 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+.++|.|+|| |.+|+.++..++..| ++|++++++.
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINE 37 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCH
Confidence 3578999997 999999999999999 9999999943
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0074 Score=42.16 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|+|+ |.+|...+..+...|..+|+++++
T Consensus 25 ~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~ 59 (171)
T d1pl8a2 25 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDL 59 (171)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccC
Confidence 34679999986 999999999999999458999988
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0069 Score=50.34 Aligned_cols=103 Identities=9% Similarity=0.138 Sum_probs=66.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh----------------------hhhhcCCCceEEEecc
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHD 89 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~d 89 (228)
..+|+|.|+ |.+|..+++.|...|..++++++...-..... +.++.+...++.+..+
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~ 103 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES 103 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 579999996 78999999999999977898886632211110 1111112234445443
Q ss_pred CCC------cccCCccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccceecc
Q 027129 90 VTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152 (228)
Q Consensus 90 ~~~------~~~~~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~~y~ 152 (228)
..+ ..+.++|+||.+.. +......+-++|++.++.+|..++.+.||
T Consensus 104 ~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip~i~~~~~G~~G 155 (529)
T d1yova1 104 PENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVG 155 (529)
T ss_dssp HHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred chhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 322 22346888887642 23334567788888888899888877766
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.16 E-value=0.0098 Score=41.76 Aligned_cols=73 Identities=14% Similarity=-0.038 Sum_probs=46.5
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc---------ccCCcc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVD 99 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~D 99 (228)
.+.+.+|+|+|+ |.+|...++.+...|..+|++++++.. ..+..+++ ..-..+...-.|. ...+.|
T Consensus 25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~-kl~~a~~l---Ga~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD-KFPKAIEL---GATECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-GHHHHHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHH-HHHHHHHc---CCcEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 344789999996 999999999999998568988888322 22222222 2223332221221 113699
Q ss_pred EEEEccC
Q 027129 100 QIYHLAC 106 (228)
Q Consensus 100 ~vi~~a~ 106 (228)
++|.+.|
T Consensus 100 ~vid~~g 106 (174)
T d1p0fa2 100 YAVECAG 106 (174)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 9999986
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0049 Score=40.70 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=30.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++|+|| |++|-.++..|.+.| .+|+++.+.+
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG-~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLG-SKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhC-cceeEEEecc
Confidence 479999996 999999999999999 9999998844
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.05 E-value=0.0055 Score=43.07 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=44.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi 102 (228)
+.+.+|+|+|+ |.+|...+..+...|...|++.+++ +...+..+++ ...+++..+-.+. ...++|+||
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~-~~k~~~a~~~---Ga~~~i~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV-ESRLELAKQL---GATHVINSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC-HHHHHHHHHH---TCSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccH-HHHHHHHHHc---CCeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence 44789999997 9999999998888884556666652 2122222332 1223333322221 112689999
Q ss_pred EccC
Q 027129 103 HLAC 106 (228)
Q Consensus 103 ~~a~ 106 (228)
.+.|
T Consensus 102 d~~G 105 (174)
T d1f8fa2 102 ESTG 105 (174)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9987
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.01 E-value=0.0038 Score=43.99 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=45.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc--------ccCCccEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI 101 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~D~v 101 (228)
+.+.+|+|+|+ |.+|...++.+...|..+|+++++++. ..+..+++. ..+.++.+-.+. .-.++|+|
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~-r~~~a~~lG---a~~~i~~~~~~~~~~v~~~t~g~G~D~v 100 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPI-CVEAAKFYG---ATDILNYKNGHIEDQVMKLTNGKGVDRV 100 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHH-HHHHHHHHT---CSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhh-hHHHHHhhC---ccccccccchhHHHHHHHHhhccCcceE
Confidence 44789999986 999999999998888557999888322 122223221 122332221111 11359999
Q ss_pred EEccCC
Q 027129 102 YHLACP 107 (228)
Q Consensus 102 i~~a~~ 107 (228)
|.++|.
T Consensus 101 id~~g~ 106 (174)
T d1jqba2 101 IMAGGG 106 (174)
T ss_dssp EECSSC
T ss_pred EEccCC
Confidence 999973
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.0029 Score=44.60 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=64.2
Q ss_pred CCEEEEecCcchhHHH--HHHHHHhcC---CCeEEEEcCCCCCCchh---hhhhc--CCCceEEEeccCCCcccCCccEE
Q 027129 32 NMRILVTGGAGFIGSH--LVDKLMENE---KNEVIVVDNYFTGSKDN---LRKWI--GHPRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~--l~~~L~~~g---~~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~~d~~~~~~~~~D~v 101 (228)
.|||.|+|| |.+|.. ++..|+... ..++++++++..+.... ..... .....++...+-.++.+.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 589999996 888864 444455431 15999999943322111 11111 11234444443334456789999
Q ss_pred EEccCCCCcccccC------------------------CchhhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 102 YHLACPASPIFYKY------------------------NPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 102 i~~a~~~~~~~~~~------------------------~~~~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
+..++.+....... ........|+...+.+++.+++... .+|.+|
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 99987543211000 0000124588889999999988775 345444
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.99 E-value=0.0029 Score=45.23 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=33.9
Q ss_pred cCCCEEEE-ecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchh
Q 027129 30 QSNMRILV-TGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN 73 (228)
Q Consensus 30 ~~~~~vlI-tGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~ 73 (228)
..+.+++| +||+|.+|...++.....| .+|+++.|...+..+.
T Consensus 27 ~~g~~vli~~ga~g~vG~~aiqlAk~~G-a~vI~~v~~~~~~~~~ 70 (189)
T d1gu7a2 27 TPGKDWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPNLDEV 70 (189)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHT-CEEEEEECCCTTHHHH
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHhhcC-CeEEEEEecccccchH
Confidence 34667777 5899999999999998899 8999998865544433
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.006 Score=39.83 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++|.|| |++|..++..|.+.| .+|+++.|.+
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G-~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLG-AKTHLFEMFD 54 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccc-cEEEEEeecc
Confidence 478999996 999999999999999 9999998854
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.95 E-value=0.0078 Score=43.03 Aligned_cols=31 Identities=42% Similarity=0.622 Sum_probs=26.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|||.|+| .|++|..++..| +.| ++|++++.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g-~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQ-NEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTT-SEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCC-CcEEEEECC
Confidence 7899997 699999998755 678 999999883
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.93 E-value=0.0066 Score=39.86 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++|+|| |+||-.++..|.+.| .+|+++.+...
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G-~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLG-AEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcC-CceEEEEeecc
Confidence 479999996 999999999999999 99999988543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.92 E-value=0.006 Score=39.72 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=30.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++|.|| |++|-.++..|.+.| .+|+++.+.+
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g-~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLG-AQVSVVEARE 54 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcc-cceEEEeeec
Confidence 478999986 999999999999999 9999998843
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0068 Score=40.15 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++|.|| |++|-.++..|.+.| .+|+++.|.+.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G-~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALG-SKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCC-cEEEEEeeccc
Confidence 479999996 999999999999999 99999999543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.85 E-value=0.0078 Score=42.09 Aligned_cols=72 Identities=14% Similarity=0.040 Sum_probs=44.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-------ccCCccEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY 102 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~D~vi 102 (228)
..+.+|+|.|+ |.+|...++.+...|...|++.+++ .++.....+.....++..+-.+. ...++|+||
T Consensus 31 ~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~----~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK----EEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS----HHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch----hHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEE
Confidence 44789999986 9999999999888885677777773 33332222222223333321111 113699999
Q ss_pred EccC
Q 027129 103 HLAC 106 (228)
Q Consensus 103 ~~a~ 106 (228)
.++|
T Consensus 106 d~~g 109 (172)
T d1h2ba2 106 DFVG 109 (172)
T ss_dssp ESSC
T ss_pred EecC
Confidence 9987
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.83 E-value=0.014 Score=41.05 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=47.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc------ccCCccEEE
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIY 102 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~D~vi 102 (228)
.+.+.+|+|+|+ |.+|...+..+...|..+|++++++..+ .+..+++....-++..+.|.... ...++|++|
T Consensus 27 ~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~k-l~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi 104 (176)
T d1d1ta2 27 VKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDK-FEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTF 104 (176)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEE
T ss_pred CCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHH-HHHHHhcCCcEEECccccchHHHHHHHHhccccceEEE
Confidence 344789999986 9999999999999985689999984332 22222222211122122221111 123799999
Q ss_pred EccC
Q 027129 103 HLAC 106 (228)
Q Consensus 103 ~~a~ 106 (228)
.+.+
T Consensus 105 ~~~g 108 (176)
T d1d1ta2 105 EVIG 108 (176)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 9986
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.81 E-value=0.0055 Score=45.14 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=32.0
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.+.++|+|+|| |..|...+..|.++| ++|.++.|..
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G-~~V~vier~~ 39 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKG-YSVHILARDL 39 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence 44579999996 999999999999999 9999999853
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.79 E-value=0.013 Score=40.87 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=44.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-Cc--------ccCCccE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EP--------LLIEVDQ 100 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~--------~~~~~D~ 100 (228)
+.+.+|+|.|+ |.+|...++.+...|...|++++++ +...+..+++.. -..+..+-. +. ...+.|+
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~-~~k~~~ak~lGa---~~~i~~~~~~~~~~~~~~~~~~~g~D~ 101 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDIN-KDKFARAKEFGA---TECINPQDFSKPIQEVLIEMTDGGVDY 101 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC-GGGHHHHHHHTC---SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEccc-HHHHHHHHHhCC---cEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence 44789999997 6789999999998885567777662 222333333322 222322111 11 1237999
Q ss_pred EEEccC
Q 027129 101 IYHLAC 106 (228)
Q Consensus 101 vi~~a~ 106 (228)
||.+.|
T Consensus 102 vid~~G 107 (176)
T d2fzwa2 102 SFECIG 107 (176)
T ss_dssp EEECSC
T ss_pred eeecCC
Confidence 999986
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0054 Score=42.10 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=29.4
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r 65 (228)
||+|.|.|+||-||...++-+.+.. .++|+++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 7899999999999999999887763 279998866
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.017 Score=40.69 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=51.2
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch------------------hhhhhcCCCceEEEe-cc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------------------NLRKWIGHPRFELIR-HD 89 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------------------~~~~~~~~~~~~~~~-~d 89 (228)
....|+|+|+|| |..|...+..|.+.| |+|+++.+.+.-.-. ..........+++.. .+
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G-~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~ 117 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARG-HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT 117 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTT-CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhc-cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence 344689999996 999999999999999 999999885432110 001111112455432 34
Q ss_pred CCCcccCCccEEEEccCC
Q 027129 90 VTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 90 ~~~~~~~~~D~vi~~a~~ 107 (228)
++.....++|.||...|.
T Consensus 118 Vt~~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 118 VTADQLQAFDETILASGI 135 (179)
T ss_dssp CCSSSSCCSSEEEECCCE
T ss_pred EcccccccceeEEEeecC
Confidence 455555688999988774
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0077 Score=36.33 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=30.0
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
||+|.|.|+ |++|+=++..-.+-| .+++.++..
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG-~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLG-IAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGT-EEEEEECTT
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC-CEEEEEcCC
Confidence 689999995 999999999999999 999999873
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.63 E-value=0.0055 Score=43.13 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|||-|+| .|-+|.++++.|++.| ++|++.+|+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G-~~V~~~dr~ 33 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKG-FKVAVFNRT 33 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCC-CeEEEEECC
Confidence 6799998 6999999999999999 999999994
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.59 E-value=0.0091 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 67 (228)
++|||+|+|| |+.|-.++..|.+.+. .+|+++.+.+
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4799999996 9999999999999872 4788887744
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.58 E-value=0.007 Score=39.94 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.++++|+|| |+||-.++..|.+.| .+|+++.|.
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG-~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIG-LDVTVMVRS 52 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred CCeEEEECC-CccHHHHHHHHhhcC-CeEEEEEec
Confidence 468999996 999999999999999 999999874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.57 E-value=0.0082 Score=39.60 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=31.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++|.|| |++|-.++..|.+.| .+|+++.|.+.
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G-~~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIG-SEVTVVEFASE 59 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcC-CeEEEEEEccc
Confidence 579999996 999999999999999 99999988544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.01 Score=42.46 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++|.|+|| |.+|+.++..++..| ++|++++++.
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTE 37 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECCh
Confidence 479999997 999999999999999 9999999943
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.48 E-value=0.011 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++|.|| |+||-.++..|.+.| .+|+++.+.+
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G-~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLG-SRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHT-CEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCC-CEEEEEEeec
Confidence 579999996 999999999999999 9999998844
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.47 E-value=0.013 Score=38.19 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=31.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
+++++|.|| |++|-.++..|.+.| .+|.++.|.+.
T Consensus 22 ~~~vvVvGg-G~ig~E~A~~l~~~g-~~vt~i~~~~~ 56 (121)
T d1mo9a2 22 GSTVVVVGG-SKTAVEYGCFFNATG-RRTVMLVRTEP 56 (121)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcc-hhheEeeccch
Confidence 689999985 999999999999999 99999988543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.46 E-value=0.06 Score=36.13 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=59.3
Q ss_pred cchhhhccCCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCcc
Q 027129 23 LRFSKFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVD 99 (228)
Q Consensus 23 ~~~~~~~~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D 99 (228)
+.+.+.+.+.++|.|+||+ +-.|..+++.|.+.| ++|+.+... ..... +... ..++.+ ....+|
T Consensus 10 ~~i~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~----~~~i~------G~~~-~~sl~d-lp~~iD 76 (139)
T d2d59a1 10 EDIREILTRYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK----YEEVL------GRKC-YPSVLD-IPDKIE 76 (139)
T ss_dssp HHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT----CSEET------TEEC-BSSGGG-CSSCCS
T ss_pred HHHHHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCc----ccccC------CCcc-cccccc-cCccce
Confidence 3445556567999999998 789999999999999 999988652 11111 1222 122222 223588
Q ss_pred EEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
.++-+.. -.....+++.+.+.|++.+.+.+
T Consensus 77 ~v~i~vp------------------~~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 77 VVDLFVK------------------PKLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp EEEECSC------------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred EEEEEeC------------------HHHHHHHHHHHHHhCCCEEEEec
Confidence 8776652 22334667777777886555433
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=95.39 E-value=0.0067 Score=41.58 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=29.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcC-CCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r 65 (228)
+|+|.|.|+||-||....+-+.+.. .++|+++.-
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 6899999999999999999887753 289999866
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.35 E-value=0.011 Score=40.51 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=42.1
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
|||.|+| .|.+|+.+++.|++.| ++|+..++.+......... .+... +...+...++|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g-~~v~~~~~~~~~~~~~~~~-----~~~~~--~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRG-VEVVTSLEGRSPSTIERAR-----TVGVT--ETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTT-CEEEECCTTCCHHHHHHHH-----HHTCE--ECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCC-CeEEEEcCchhHHHHHhhh-----ccccc--ccHHHHHhhcCeEEEEe
Confidence 7899997 6999999999999999 9998887743322221111 11111 11223345799999876
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.31 E-value=0.011 Score=45.73 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=32.3
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF 67 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 67 (228)
|+.||+|+|+|| |.-|...+..|++++. ++|+++.|..
T Consensus 1 m~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 1 LPTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CCSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 466899999996 9999999999998763 6999998853
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.29 E-value=0.01 Score=41.93 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=29.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|+|.|+|+ |-.|.+++..|.++| ++|.+..|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g-~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNG-NEVRIWGT 31 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHC-CEEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEEEEe
Confidence 89999996 999999999999999 99999988
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.029 Score=38.91 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=32.2
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
..+|+++|.|.+.-+|+.++..|.++| .+|+.....
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~g-atVt~~h~~ 70 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTHRF 70 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEECSS
T ss_pred cccceEEEEeccccccHHHHHHHHHhh-ccccccccc
Confidence 458999999999999999999999999 899887663
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.27 E-value=0.011 Score=45.51 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=30.8
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+|+|+|+|| |.-|...|..|.+.| ++|.++.+..
T Consensus 2 ~KKI~IIGa-G~sGL~aA~~L~k~G-~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGA-GFSGAVIGRQLAEKG-HQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred CCEEEEECC-cHHHHHHHHHHHhCC-CCEEEEECCC
Confidence 689999996 999999999999999 9999998843
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.26 E-value=0.14 Score=35.86 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=31.5
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++.|+| .|-||+.+++.|..-| .+|++.+|..
T Consensus 41 ~gk~vgIiG-~G~IG~~va~~l~~~g-~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLG-LGEIGTRVGKILAALG-AQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEES-CSTHHHHHHHHHHHTT-CEEEEECSSC
T ss_pred cCceEEEec-cccccccceeeeeccc-cccccccccc
Confidence 489999999 5999999999999999 9999999854
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.17 E-value=0.016 Score=40.79 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|-||.|.| .|.||+.+++.|..++..+|+++...
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~ 34 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKT 34 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECC
Confidence 56899998 79999999999998865788887653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.10 E-value=0.016 Score=42.82 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
..+||+|+|| |..|..++..|.+.| ++|+++.|..
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G-~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAG-VDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence 4689999996 999999999999999 9999999853
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.09 E-value=0.028 Score=38.78 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=30.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|.|+ |.+|...++.+...| .+|+++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G-~~Vi~~~~ 59 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMG-LHVAAIDI 59 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcC-Cccceecc
Confidence 44789999986 999999999888889 89999988
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.08 E-value=0.014 Score=43.75 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+|||+|+|| |.-|...+.+|.+.| ++|.++.+.+
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G-~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHG-LNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTS-CEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC-CCEEEEeCCC
Confidence 489999996 999999999999999 9999998743
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.01 E-value=0.021 Score=41.06 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=45.7
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
..+++|.|-| .|-+|+++++.|.+.| .+|++.+.+ ......... ...+.+. ..+....++|+++-||.
T Consensus 25 L~gk~v~IqG-~G~VG~~~A~~L~~~G-akvvv~d~d----~~~~~~~~~-~g~~~~~--~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 25 LDGLTVLVQG-LGAVGGSLASLAAEAG-AQLLVADTD----TERVAHAVA-LGHTAVA--LEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC----HHHHHHHHH-TTCEECC--GGGGGGCCCSEEEECSC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEecch----HHHHHHHHh-hcccccC--ccccccccceeeecccc
Confidence 3479999998 6999999999999999 999988762 222222111 1222222 22334458999998874
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.96 E-value=0.057 Score=37.40 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=44.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc---------ccCCcc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVD 99 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~D 99 (228)
.+.+.+|+|+|+ |.+|...+..+...+...|+++++. .++++...+..--..+..+-.+. ...+.|
T Consensus 26 ~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~----~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 26 VEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN----PDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC----GGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEEEEEec-CCccchHHHHHHHHhhchheeecch----HHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcc
Confidence 344789999996 6677777777777765789888883 33332222222223333221111 113699
Q ss_pred EEEEccC
Q 027129 100 QIYHLAC 106 (228)
Q Consensus 100 ~vi~~a~ 106 (228)
++|.+.|
T Consensus 101 ~vid~~G 107 (175)
T d1cdoa2 101 FSLECVG 107 (175)
T ss_dssp EEEECSC
T ss_pred eeeeecC
Confidence 9999987
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.089 Score=35.04 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=33.6
Q ss_pred chhhhccCCCEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcC
Q 027129 24 RFSKFFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 24 ~~~~~~~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.+.+.+.+.++|.|+||+ +-.|..+++.|++.| +.++.+.-
T Consensus 5 ~i~~~L~~pksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~ 48 (136)
T d1iuka_ 5 ELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNP 48 (136)
T ss_dssp HHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECG
T ss_pred HHHHHHhCCCeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEe
Confidence 345555567999999988 668999999999999 99988755
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.89 E-value=0.25 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.6
Q ss_pred CEEEEecCc---chhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|+|.|.|++ +-.|..+++.|++.| ++|+.+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP 36 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNP 36 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEcc
Confidence 689999987 779999999999999 99998865
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.87 E-value=0.013 Score=41.35 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=30.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCC-eEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~ 68 (228)
++||+|+|| |..|...+..|.+.| + .|+++.|.+.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G-~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLG-YSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTT-CCCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCC-CCeEEEEEecCc
Confidence 589999996 999999999999999 7 5999988543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.84 E-value=0.026 Score=41.42 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEccCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~~ 107 (228)
..+++|+|-| -|-+|+++++.|.+.| .+|++.+. ..............+.+ +..+....++|+++-||-.
T Consensus 37 l~g~~v~IqG-~GnVG~~~a~~L~~~G-akvv~~d~----~~~~~~~~~~~~g~~~~--~~~~~~~~~cDIl~PcA~~ 106 (230)
T d1leha1 37 LEGLAVSVQG-LGNVAKALCKKLNTEG-AKLVVTDV----NKAAVSAAVAEEGADAV--APNAIYGVTCDIFAPCALG 106 (230)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS----CHHHHHHHHHHHCCEEC--CGGGTTTCCCSEEEECSCS
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEeecc----cHHHHHHHHHhcCCccc--CCcccccccccEecccccc
Confidence 4489999998 6999999999999999 89988876 33333322222222322 2223344589999998853
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.014 Score=39.75 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=30.5
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.++|+++|+|| |.+|..-++.|++.| .+|+++..
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~G-A~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTG-CKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGT-CEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeC
Confidence 34899999997 999999999999999 89998865
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.72 E-value=0.014 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=29.6
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|+|+|| |.-|...+..|.+.| ++|+++.+.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G-~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRG-TDAVLLESS 32 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTT-CCEEEECSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCC-CCEEEEecC
Confidence 68999996 999999999999999 999999874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.70 E-value=0.0059 Score=42.58 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEecc--CCCcccCCccEEEEccCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEPLLIEVDQIYHLACP 107 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~D~vi~~a~~ 107 (228)
..+|+|+|+ |-.|..-++...+.| ..|++++.+.... +.++.... ..++....+ ...+...+.|+||.++-.
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~lG-A~V~~~D~~~~~l-~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGLG-AQVQIFDINVERL-SYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHH-HHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CcEEEEECC-ChHHHHHHHHHhhCC-CEEEEEeCcHHHH-HHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 469999996 999999999999999 9999999932221 12222221 123333222 122334589999998854
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.65 E-value=0.014 Score=43.51 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=29.3
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.|+|+|| |..|..++.+|.++| .+|+++.+..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G-~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKEN-KNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 3999996 999999999999999 9999999854
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.63 E-value=0.02 Score=40.10 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=30.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
..+|-|+| .|-+|..+++.|++.| ++|++.+|.+
T Consensus 2 ~~nIg~IG-lG~MG~~mA~~L~~~G-~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIG-LAVMGQNLILNMNDHG-FVVCAFNRTV 35 (176)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSST
T ss_pred CCcEEEEe-EhHHHHHHHHHHHHCC-CeEEEEcCCH
Confidence 46799998 5999999999999999 9999999943
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.017 Score=40.43 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=31.7
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
...+|+++|+|-+.-+|+.++..|+++| ..|+....
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~g-aTVt~~~~ 61 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDG-ATVYSVDV 61 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTS-CEEEEECS
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCC-CEEEEecc
Confidence 3458999999999999999999999999 88887765
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.54 E-value=0.027 Score=35.94 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
+|+|+|.|+ |--|..++..|.+.. .+++.+.|+
T Consensus 32 gK~VlVVG~-g~Sa~dia~~l~~~a-k~v~~~~~r 64 (107)
T d2gv8a2 32 GESVLVVGG-ASSANDLVRHLTPVA-KHPIYQSLL 64 (107)
T ss_dssp TCCEEEECS-SHHHHHHHHHHTTTS-CSSEEEECT
T ss_pred CCeEEEECC-CCCHHHHHHHHHHhc-CEEEEEEec
Confidence 799999995 899999999998887 555555553
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.52 E-value=0.021 Score=39.82 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=59.3
Q ss_pred CEEEEecCc-chhHHHHHHHHHhcCC---CeEEEEcCCCCCCchhhhhh-----c--CCCceEEEeccCCCcccCCccEE
Q 027129 33 MRILVTGGA-GFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKW-----I--GHPRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 33 ~~vlItGat-G~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~~~~~d~~~~~~~~~D~v 101 (228)
|||.|+||. .+.+..++..+..... .++++++.+........... . ...........-......+.|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 689999973 3444555554444321 38888888433211111111 1 11223333332223345689999
Q ss_pred EEccCCCCcccccCC----------------c--hhhHHhhHHHHHHHHHHHHHcCC-eEEEE
Q 027129 102 YHLACPASPIFYKYN----------------P--VKTIKTNVIGTLNMLGLAKRVGA-RILLT 145 (228)
Q Consensus 102 i~~a~~~~~~~~~~~----------------~--~~~~~~n~~~~~~l~~~~~~~~~-r~i~~ 145 (228)
|..++.........+ + ......|+...+.+++.+++... -++.+
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~ 144 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLIN 144 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEE
Confidence 999986532111000 0 01134688888888888888765 34433
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.42 E-value=0.054 Score=38.52 Aligned_cols=73 Identities=19% Similarity=0.085 Sum_probs=45.0
Q ss_pred ccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCC-Cc--------ccCCcc
Q 027129 29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EP--------LLIEVD 99 (228)
Q Consensus 29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~-~~--------~~~~~D 99 (228)
...+.+|+|+|+ |.+|...+..+...|..+|+++++ ..+++...... ..+.+.-... +. .-.+.|
T Consensus 23 v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~----~~~rl~~a~~~-Ga~~~~~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 23 VGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL----NPARLAHAKAQ-GFEIADLSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES----CHHHHHHHHHT-TCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecc----cchhhHhhhhc-cccEEEeCCCcCHHHHHHHHhCCCCcE
Confidence 345789999986 999988888887777568888887 33332222111 2333321111 11 123699
Q ss_pred EEEEccCC
Q 027129 100 QIYHLACP 107 (228)
Q Consensus 100 ~vi~~a~~ 107 (228)
++|.+.|.
T Consensus 97 ~vid~vG~ 104 (195)
T d1kola2 97 CAVDAVGF 104 (195)
T ss_dssp EEEECCCT
T ss_pred EEEECccc
Confidence 99999873
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.39 E-value=0.047 Score=38.07 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|++|.|-| .|-||+.+++.|..+++.+|+++..
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd 33 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK 33 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence 68999997 7999999999998887567777654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.38 E-value=0.075 Score=37.01 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=26.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
+||.|-| .|-||+.+++.|..++..+|+++..
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 6899998 6999999999998876577777754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.31 E-value=0.054 Score=39.43 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=32.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
...++|+|+|| |..|...+.+|.+.| ++|+++.+..
T Consensus 47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G-~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVGA-GPSGSEAARVLMESG-YTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSS
T ss_pred cCCceEEEEcc-cHHHHHHHHHHHHhc-cceeeEeecc
Confidence 45789999996 999999999999999 9999998744
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.15 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
-.+|+++|+|.+.-+|+.++..|.++| ..|+.....
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~g-atVt~~~~~ 72 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCHSK 72 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEECTT
T ss_pred cccceEEEEecCCccchHHHHHHHhcc-CceEEEecc
Confidence 458999999999999999999999999 999988774
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.24 E-value=0.026 Score=40.31 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG 69 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~ 69 (228)
.++++.|.| .|-||+.+++.|..-| .+|.+.++....
T Consensus 48 ~gktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~~ 84 (193)
T d1mx3a1 48 RGETLGIIG-LGRVGQAVALRAKAFG-FNVLFYDPYLSD 84 (193)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTSCT
T ss_pred eCceEEEec-cccccccceeeeeccc-cceeeccCcccc
Confidence 479999998 5999999999999999 999999885443
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.031 Score=38.59 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=33.1
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+..+|++.|+| .|++|+.+++.|...| -+|.+....
T Consensus 20 ~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G-~~V~v~e~d 56 (163)
T d1li4a1 20 VMIAGKVAVVAG-YGDVGKGCAQALRGFG-ARVIITEID 56 (163)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred ceecCCEEEEec-cccccHHHHHHHHhCC-CeeEeeecc
Confidence 345689999998 8999999999999999 999999884
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.13 E-value=0.032 Score=42.26 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
...++|+|+|| |..|...+..|.+.| ++|.++.+.
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G-~~V~vlE~~ 62 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAG-HQVTVLEAS 62 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHT-CEEEEECSS
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 34589999996 999999999999999 999999874
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.11 E-value=0.035 Score=39.33 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=28.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF 67 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~ 67 (228)
|||+|+|| |++|-.++..|.+.+. .+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 78999996 9999999999988752 6888887743
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.023 Score=43.26 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|..|+|+|| |.-|..++..|.+.| ++|.++.++
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g-~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLN-KKVLVIEKR 33 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGT-CCEEEECSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCC-CcEEEEECC
Confidence 568999996 999999999999999 999999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.98 E-value=0.035 Score=39.34 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++.|.| .|-||+.+++.|..-| .+|...++...
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 78 (188)
T d2naca1 43 EAMHVGTVA-AGRIGLAVLRRLAPFD-VHLHYTDRHRL 78 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHGGGT-CEEEEECSSCC
T ss_pred cccceeecc-ccccchhhhhhhhccC-ceEEEEeeccc
Confidence 478999998 6999999999999989 99999998543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.57 E-value=0.062 Score=36.46 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=29.4
Q ss_pred CCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+++++|.+ +.||+|..+++.|.+.| .+|+++.+..
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G-~~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAG-HEVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcC-CeEEEEecCC
Confidence 56777762 45999999999999999 9999998843
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.045 Score=36.49 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=31.1
Q ss_pred hhccCCCEEEEecCcchhHHHHHHHHHh----cCCCeEEEEcCCCC
Q 027129 27 KFFQSNMRILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFT 68 (228)
Q Consensus 27 ~~~~~~~~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~ 68 (228)
+.+...++++|.|| |++|-.++..|.+ .| .+|+.+.+.+.
T Consensus 32 ~~~~~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g-~~Vt~i~~~~~ 75 (137)
T d1m6ia2 32 KISREVKSITIIGG-GFLGSELACALGRKARALG-TEVIQLFPEKG 75 (137)
T ss_dssp HHHHHCSEEEEECC-SHHHHHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred HHhhcCCEEEEECC-CHHHHHHHHHHHHHHHhcC-CEEEEeccccc
Confidence 34455789999986 9999999988853 47 89999887443
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.47 E-value=0.032 Score=41.85 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=29.8
Q ss_pred CC-EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~-~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|| +|+|.|| |..|..++..|.+.| .+|.++.+.
T Consensus 1 mk~~V~IvGa-Gp~Gl~~A~~L~~~G-~~v~vlE~~ 34 (292)
T d1k0ia1 1 MKTQVAIIGA-GPSGLLLGQLLHKAG-IDNVILERQ 34 (292)
T ss_dssp CBCSEEEECC-SHHHHHHHHHHHHHT-CCEEEECSS
T ss_pred CCCCEEEECc-CHHHHHHHHHHHHCC-CCEEEEeCC
Confidence 44 6999996 899999999999999 999999884
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.47 E-value=0.034 Score=38.62 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=58.0
Q ss_pred CCEEEEecCcchhHHH-HHHHHHhc-CC---CeEEEEcCCCCCCch---hhhhhc--CCCceEEEeccCCCcccCCccEE
Q 027129 32 NMRILVTGGAGFIGSH-LVDKLMEN-EK---NEVIVVDNYFTGSKD---NLRKWI--GHPRFELIRHDVTEPLLIEVDQI 101 (228)
Q Consensus 32 ~~~vlItGatG~iG~~-l~~~L~~~-g~---~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~~d~~~~~~~~~D~v 101 (228)
..||.|+|| |.+|.. ++..|+.. .. .++++++....+... .+.... ...........-..+...+.|+|
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 458999998 555654 44445443 21 389999884332211 111110 01223333322223345689999
Q ss_pred EEccCCCCcccccCCch------------------hhHHhhHHHHHHHHHHHHHcCC--eEEEEc
Q 027129 102 YHLACPASPIFYKYNPV------------------KTIKTNVIGTLNMLGLAKRVGA--RILLTS 146 (228)
Q Consensus 102 i~~a~~~~~~~~~~~~~------------------~~~~~n~~~~~~l~~~~~~~~~--r~i~~S 146 (228)
|..+|.........+.. .....|+.....+++.+++... -++.+|
T Consensus 82 vitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 82 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 99998643221111100 0012456777777777777665 344444
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.39 E-value=0.039 Score=38.27 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
++++|+|.|| |++|-.++..|.+.| .++.++.+
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g-~~v~v~~~ 34 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASG-WEGNIRLV 34 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEE
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcC-CceEEEEe
Confidence 4689999996 999999999999998 65555433
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.067 Score=40.35 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
...+|+|+|| |.-|...+..|.+.| ++|.++.+
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G-~~V~VlEa 36 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFG-MDVTLLEA 36 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC-CCEEEEeC
Confidence 3568999996 999999999999999 99999966
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.13 E-value=0.16 Score=33.25 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=54.0
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCc-ccCCccEEEEccCCCCcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACPASPI 111 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~D~vi~~a~~~~~~ 111 (228)
-+|+|.|| |.+|+++++.+..+..++++++.......... .. .++.....|.... .....++++-+..
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~---~I--~Gi~V~~~~~l~~~~~~~i~iai~~i~----- 72 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR---PV--RGGVIEHVDLLPQRVPGRIEIALLTVP----- 72 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC---EE--TTEEEEEGGGHHHHSTTTCCEEEECSC-----
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC---EE--CCEEEecHHHHHHHHhhcccEEEEeCC-----
Confidence 48999996 99999999987654338888886643322211 11 2344443332211 1124565555431
Q ss_pred cccCCchhhHHhhHHHHHHHHHHHHHcCCe-EEEEccce
Q 027129 112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149 (228)
Q Consensus 112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r-~i~~Ss~~ 149 (228)
-...+.+++.|.++|++ +..++...
T Consensus 73 -------------~~~~~~I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 73 -------------REAAQKAADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp -------------HHHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred -------------HHHHHHHHHHHHHcCCCEEeecCcee
Confidence 12225678888888984 76666554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.09 E-value=0.11 Score=35.55 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+.+|+|.|+ |-+|...+..+...| .+|+++++
T Consensus 26 ~~g~~vlv~G~-G~iG~~a~~~a~~~g-~~v~~~~~ 59 (168)
T d1rjwa2 26 KPGEWVAIYGI-GGLGHVAVQYAKAMG-LNVVAVDI 59 (168)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTT-CEEEEECS
T ss_pred CCCCEEEEeec-ccchhhhhHHHhcCC-CeEeccCC
Confidence 34789999975 899999999999999 89999987
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.28 Score=34.33 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=31.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++.|.| .|.||+.+++.|..-| .+|+..++...
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 78 (188)
T d1sc6a1 43 RGKKLGIIG-YGHIGTQLGILAESLG-MYVYFYDIENK 78 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred cceEEEEee-cccchhhhhhhccccc-ceEeecccccc
Confidence 479999997 6999999999999999 99999988543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.71 E-value=0.052 Score=38.54 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=31.6
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.++++.|.| .|.||+.+++.|..-| .+|...++...
T Consensus 46 ~g~tvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 81 (191)
T d1gdha1 46 DNKTLGIYG-FGSIGQALAKRAQGFD-MDIDYFDTHRA 81 (191)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECSSCC
T ss_pred cccceEEee-cccchHHHHHHHHhhc-ccccccccccc
Confidence 489999998 5999999999999999 99999987444
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.65 E-value=0.0097 Score=43.39 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCe
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNE 59 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~ 59 (228)
|+|+|+|| |-+|...+.+|.++| ++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G-~~ 25 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERY-HS 25 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHH-TT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCC-CC
Confidence 78999996 999999999999998 54
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.62 E-value=0.053 Score=37.28 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.7
Q ss_pred hccCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+..+|+++|.| -|++|+-+++.|...| .+|+++...
T Consensus 19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~G-a~V~V~E~D 55 (163)
T d1v8ba1 19 FLISGKIVVICG-YGDVGKGCASSMKGLG-ARVYITEID 55 (163)
T ss_dssp CCCTTSEEEEEC-CSHHHHHHHHHHHHHT-CEEEEECSC
T ss_pred ceecCCEEEEec-ccccchhHHHHHHhCC-CEEEEEecC
Confidence 345689999998 6999999999999999 999998773
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.48 E-value=0.099 Score=37.24 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.+++|.|.| .|-||+.+++.|..-| .+|++.++...
T Consensus 44 ~~ktvgIiG-~G~IG~~va~~l~~fg-~~v~~~d~~~~ 79 (199)
T d1dxya1 44 GQQTVGVMG-TGHIGQVAIKLFKGFG-AKVIAYDPYPM 79 (199)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred cceeeeeee-cccccccccccccccc-eeeeccCCccc
Confidence 379999998 6999999999999999 99999988543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.40 E-value=0.095 Score=37.32 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
.+++|.|.| .|.||+.+++.|..-| .+|++.++.
T Consensus 42 ~gk~vgIiG-~G~IG~~va~~l~~fg-~~V~~~d~~ 75 (197)
T d1j4aa1 42 RDQVVGVVG-TGHIGQVFMQIMEGFG-AKVITYDIF 75 (197)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred cCCeEEEec-ccccchhHHHhHhhhc-ccccccCcc
Confidence 379999998 6999999999999989 999999874
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.33 E-value=0.12 Score=33.24 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCEEEEecCcchhHHHHHHHHHhc---CCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~~ 68 (228)
.++++|.|| |++|-.++..|.+. | .+|+++.|.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g-~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARG-GQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTT-CEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccc-cccceeccccc
Confidence 479999996 99999999876553 6 79999988443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.078 Score=37.97 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=28.7
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.|+|+|| |.-|...+..|.+.| ++|.++.+..
T Consensus 7 DviViGa-G~~Gl~~A~~La~~G-~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGT-GITECILSGLLSVDG-KKVLHIDKQD 38 (297)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CCEEEEcCCC
Confidence 4799995 999999999999999 9999998854
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.088 Score=37.64 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
||++++| ++..|..+++.|++.| ++|.++..
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g-~~I~~Vvt 31 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAG-YEISAIFT 31 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCC-CCEEEEEc
Confidence 7888887 4668999999999999 99987764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.92 E-value=0.088 Score=39.08 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=28.4
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
|+|+|| |..|..++.+|.++| ++|+++.+..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G-~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQG-VKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTT-CCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence 899996 999999999999999 9999998853
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.92 E-value=0.12 Score=37.92 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
++|+|+|| |..|..++..|.+.|.+.|.++.|.+.
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 68999996 999999999999999448889888543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.83 E-value=0.17 Score=35.39 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=30.5
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
-+|+|+|| |-.|..-++.....| ..|.+++.+..
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lG-A~V~v~D~~~~ 63 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLG-AVVMATDVRAA 63 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCST
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcC-CEEEEEeccHH
Confidence 58999996 999999999999999 99999998543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.71 E-value=0.16 Score=34.39 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++|+|+|| |..|...+..+++.|...|+++.|..
T Consensus 45 ~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 578999986 99999999999999867888888743
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=91.37 E-value=0.089 Score=39.58 Aligned_cols=33 Identities=33% Similarity=0.623 Sum_probs=28.3
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
+|+|+|| |.+|..++.+|.++|.++|.+++|..
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999996 99999999999999833699998853
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=91.34 E-value=0.32 Score=34.74 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=47.0
Q ss_pred ccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCccc--CCccEEE
Q 027129 29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL--IEVDQIY 102 (228)
Q Consensus 29 ~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~--~~~D~vi 102 (228)
+..+++||-+| |+|++...+++.+-..+ .|++++..+.- .+..+.. .....+.++.+|..+... ..+|.|+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g--~V~~id~~~~~-~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~ 149 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKI-CEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIF 149 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTC--EEEEEESCHHH-HHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCC--cEEEeecchhh-HHHhhhhHhhhcccccccccCchHHccccccchhhhh
Confidence 35578999888 66777776666554554 99999883221 1111111 123467778888765332 3589988
Q ss_pred EccCC
Q 027129 103 HLACP 107 (228)
Q Consensus 103 ~~a~~ 107 (228)
..++.
T Consensus 150 ~~~~~ 154 (213)
T d1dl5a1 150 VTVGV 154 (213)
T ss_dssp ECSBB
T ss_pred hhccH
Confidence 87653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.30 E-value=0.092 Score=34.40 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=43.7
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc------CCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~D~vi~~a 105 (228)
|-++|+|. |-+|+.+++.|. + +.|++++.. .+...... ...+.++.+|.++... .+++.+|-+.
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~-~~i~vi~~d----~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--G-SEVFVLAED----ENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--G-GGEEEEESC----TTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHc--C-CCCEEEEcc----hHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 34788885 889999999984 4 567777763 22222221 2468899999998743 3688888655
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.26 E-value=0.13 Score=33.14 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC--CeEEEEcCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYF 67 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~ 67 (228)
.++++|.|| |++|-.++..|.+.+. .+|+++.|.+
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 579999996 9999999987765541 5799988743
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=91.18 E-value=0.22 Score=34.02 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=35.5
Q ss_pred CEEEEecCcchhHHH-HHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+|+.|+|+ |.+|+. .+..|.+.+..++++.++ ..+......+...+.....|..+....++|+|+-+.
T Consensus 2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~t 70 (167)
T d1xeaa1 2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTR----NPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHA 70 (167)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECS----CHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECS
T ss_pred eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEC----CHHHHHHHHHhcccccccccHHHhcccccceecccc
Confidence 68999985 788865 556665554357666655 232222221111121122233332223689888665
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.79 E-value=0.14 Score=36.89 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=27.7
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
+|+|+|| |.-|...+..|.+.|.++|+++.+.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECC
Confidence 5999996 9999999999999993369999874
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.72 E-value=0.15 Score=34.61 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=26.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
||+|+|| |++|-.++..|.+ + .+|+++.+.+
T Consensus 2 rVvIIGg-G~~G~e~A~~l~~-~-~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLSQ-T-YEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHTT-T-SEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHHc-C-CCEEEEeccc
Confidence 7899996 9999999999854 5 7999998743
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=90.72 E-value=0.057 Score=37.55 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=23.3
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEE
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~ 63 (228)
.+|+|+|| |++|-.++..|.+.| .++.++
T Consensus 4 a~VvIIGg-G~~G~e~A~~l~~~g-~~v~i~ 32 (183)
T d1d7ya1 4 APVVVLGA-GLASVSFVAELRQAG-YQGLIT 32 (183)
T ss_dssp SSEEEECC-SHHHHHHHHHHHHHT-CCSCEE
T ss_pred CCEEEECc-cHHHHHHHHHHHhcC-CceEEE
Confidence 36999995 999999999999988 544443
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.66 E-value=0.14 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=29.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
...|+|+|| |+.|..++.+|.+.| .+|+++.+.
T Consensus 7 ~~dV~IIGA-G~sGl~~a~~L~~~G-~~v~i~Ek~ 39 (298)
T d1w4xa1 7 EVDVLVVGA-GFSGLYALYRLRELG-RSVHVIETA 39 (298)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CCCEEEECc-cHHHHHHHHHHHhCC-CCEEEEEcC
Confidence 357999997 999999999999999 899999874
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.44 E-value=0.24 Score=36.35 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.++++|+|-| -|-+|+++++.|.+.| .+|++++.
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~G-akvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMG-AKVIAVSD 62 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEEEC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CeEEEeec
Confidence 4589999998 6999999999999999 89988765
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=90.04 E-value=0.26 Score=36.29 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=49.6
Q ss_pred cCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCch---hhhhhcCCCceEEEeccCCCccc-CCccEEEEc
Q 027129 30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHL 104 (228)
Q Consensus 30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~-~~~D~vi~~ 104 (228)
..+++||=.| |+|.+..++++.+-..| +|++++++...... .+........+++..+|+.+... ..+|.|+..
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g--~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld 161 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD 161 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence 4578999999 67888888888876666 99999983221111 11122233578999999887543 358988754
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=89.99 E-value=0.33 Score=32.68 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=24.5
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
||-++| .|.+|..+++.|++.| +.+ ...|.
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g-~~~-~~~~~ 31 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRF-PTL-VWNRT 31 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTS-CEE-EECSS
T ss_pred eEEEEe-HHHHHHHHHHHHHhCC-CEE-EEeCC
Confidence 578888 6999999999999988 665 55663
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.61 E-value=0.28 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=25.9
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~ 64 (228)
|||||+| +|.=-.++++.|.+.. +++++.-
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~-~~v~~~p 30 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQG-YEVHFYP 30 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCC-CeEEEec
Confidence 7999999 5777899999999888 8888873
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=89.38 E-value=1.1 Score=30.54 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=23.7
Q ss_pred ccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 29 ~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.+++++||..| |+|. .+..|.+.| ++|++++.
T Consensus 18 ~~~~~rvLd~GCG~G~----~a~~la~~G-~~V~gvD~ 50 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQ----DMSWLSGQG-YHVVGAEL 50 (201)
T ss_dssp CCTTCEEEETTTCCSH----HHHHHHHHC-CEEEEEEE
T ss_pred CCCCCEEEEecCcCCH----HHHHHHHcC-CceEeecc
Confidence 34578999999 4443 344566679 99999998
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.2 Score=37.80 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=27.5
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
|+|+|| |.-|...+..|.+.| ++|+++.+.
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G-~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSG-LNVVVLEAR 31 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred EEEECC-CHHHHHHHHHHHhCC-CCEEEEecC
Confidence 789996 999999999999999 999999763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.64 Score=33.41 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=44.8
Q ss_pred cCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh--------cCCCceEEEeccCCCcc--cCCc
Q 027129 30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--------IGHPRFELIRHDVTEPL--LIEV 98 (228)
Q Consensus 30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~--~~~~ 98 (228)
..+.+||-+| |+|+....+++.+-.. .+|+++++...- .+..++. .....+.+..+|..+.. ...+
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~--g~V~~ie~~~~l-~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f 151 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCT--GKVIGIDHIKEL-VDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY 151 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT--CEEEEEESCHHH-HHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCC--ceEEEEcCCHHH-HHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence 4578999999 5566655555544334 499999883221 1111111 12246778888876533 3368
Q ss_pred cEEEEccCC
Q 027129 99 DQIYHLACP 107 (228)
Q Consensus 99 D~vi~~a~~ 107 (228)
|.|+..++.
T Consensus 152 D~I~~~~~~ 160 (224)
T d1i1na_ 152 DAIHVGAAA 160 (224)
T ss_dssp EEEEECSBB
T ss_pred hhhhhhcch
Confidence 999887753
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=1 Score=30.26 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=35.9
Q ss_pred CEEEEecCcchhHHH-HHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 33 ~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+++.|+| +|.+|+. .+..|...+..+++++............... ++.+ .|..+....++|+|+-+.
T Consensus 2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~D~V~I~t 69 (164)
T d1tlta1 2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---RIPY--ADSLSSLAASCDAVFVHS 69 (164)
T ss_dssp EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---TCCB--CSSHHHHHTTCSEEEECS
T ss_pred CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---cccc--cccchhhhhhcccccccc
Confidence 6899998 5999975 5666665533677766543333322222211 1221 111122234789888665
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.66 E-value=0.95 Score=32.45 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=49.1
Q ss_pred cCCCEEEEec-CcchhHHHHHHHHHhcCC---CeEEEEcCCCCCCchhhhh--------hcCCCceEEEeccCCCcc--c
Q 027129 30 QSNMRILVTG-GAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRK--------WIGHPRFELIRHDVTEPL--L 95 (228)
Q Consensus 30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~~--~ 95 (228)
.++.+||.+| ||||....+++.+-..|. .+|+.+.+...- .+..++ ......+.+..+|..+.. .
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l-~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAEL-VRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHH-HHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHH-HHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 4478999999 688888777777766551 489999883211 011111 011246888888877643 3
Q ss_pred CCccEEEEccCC
Q 027129 96 IEVDQIYHLACP 107 (228)
Q Consensus 96 ~~~D~vi~~a~~ 107 (228)
..+|.|+..++.
T Consensus 158 ~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 158 APYNAIHVGAAA 169 (223)
T ss_dssp CSEEEEEECSCB
T ss_pred cceeeEEEEeec
Confidence 368988887764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=88.40 E-value=0.36 Score=34.87 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=44.0
Q ss_pred ccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh-hcCCCceEEEeccCCCc--ccCCccEEEEc
Q 027129 29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WIGHPRFELIRHDVTEP--LLIEVDQIYHL 104 (228)
Q Consensus 29 ~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~d~~~~--~~~~~D~vi~~ 104 (228)
+..+++||-+| |+||+-..+++ .+ .+|+++.+.+.- .+..+. ......+.++.+|.... ....+|.|+..
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~----l~-~~V~aiE~~~~~-~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~ 141 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAE----IV-DKVVSVEINEKM-YNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVW 141 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHH----HS-SEEEEEESCHHH-HHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEES
T ss_pred hcccceEEEecCCCCHHHHHHHH----Hh-cccccccccHHH-HHHHHHHHhcccccccccCchhhcchhhhhHHHHHhh
Confidence 35578999998 56665543333 34 589999873221 112222 22345788999887653 23458998877
Q ss_pred cC
Q 027129 105 AC 106 (228)
Q Consensus 105 a~ 106 (228)
++
T Consensus 142 ~a 143 (224)
T d1vbfa_ 142 AT 143 (224)
T ss_dssp SB
T ss_pred cc
Confidence 65
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=88.36 E-value=0.2 Score=34.30 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=40.8
Q ss_pred CEEEEecCcchhHHHHHHH-HHhcC----CCeEEEEcCCCCCCchhh---hhhcCCCceEEEeccCCCcccCCccEEEEc
Q 027129 33 MRILVTGGAGFIGSHLVDK-LMENE----KNEVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~-L~~~g----~~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
|||.|+|| |.+|...+-. |+..- ..++.+++.+..+..... ..... .........-......++|+||..
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~-~~~~~~~t~~~~~~l~~aDvVVit 78 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK-DRFKVLISDTFEGAVVDAKYVIFQ 78 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT-TSSEEEECSSHHHHHTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc-cCceEEEecCcccccCCCCEEEEe
Confidence 78999998 5577666533 33221 158999998433221110 11111 223333322233456789999999
Q ss_pred cCCC
Q 027129 105 ACPA 108 (228)
Q Consensus 105 a~~~ 108 (228)
++..
T Consensus 79 a~~~ 82 (162)
T d1up7a1 79 FRPG 82 (162)
T ss_dssp CCTT
T ss_pred cccC
Confidence 9864
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.30 E-value=0.35 Score=34.34 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.2
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
|||++.| ++..|..+++.|++++ ++|.++..
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~-~~i~~V~t 31 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEG-HEVVGVFT 31 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCC-CcEEEEEc
Confidence 7899997 5789999999999999 99988764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=88.21 E-value=0.25 Score=38.13 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=49.3
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
+.+++.|+| +|..+..-++.+.+. +-.+|++.+|++.+.......+.....+++...+-.+....+.|+|+.+.
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECC
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecc
Confidence 357999998 588999888877764 34799999995444333444443444667766655555555677776554
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.93 E-value=0.8 Score=32.58 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred cCCCEEEEecCcchhHHHHHHHHH--------------------hcCCCeEEEEcCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLM--------------------ENEKNEVIVVDNYFT 68 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~--------------------~~g~~~V~~~~r~~~ 68 (228)
..+++|+|+|+ |.++..+++.|+ +.+..+|+++.|...
T Consensus 37 ~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 37 LSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94 (216)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred ccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence 34799999995 999999999887 566689999998544
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.83 E-value=0.45 Score=33.14 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=30.8
Q ss_pred CCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.++++.|.| .|.||+.+++.+..-| .+|++.++..
T Consensus 43 ~~k~vgiiG-~G~IG~~va~~~~~fg-~~v~~~d~~~ 77 (184)
T d1ygya1 43 FGKTVGVVG-LGRIGQLVAQRIAAFG-AYVVAYDPYV 77 (184)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTT-CEEEEECTTS
T ss_pred cceeeeecc-ccchhHHHHHHhhhcc-ceEEeecCCC
Confidence 478999998 5999999999999989 9999998843
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=87.55 E-value=0.78 Score=32.58 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=50.9
Q ss_pred hccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhh-------hhcCCCceEEEeccCCCcccCCcc
Q 027129 28 FFQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-------KWIGHPRFELIRHDVTEPLLIEVD 99 (228)
Q Consensus 28 ~~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~D 99 (228)
..+.+.+||=.| |+|.+...+++++...+ .+|++++. +.+.+. .......+.+...|..+....+.|
T Consensus 36 ~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~-~~v~giD~----S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d 110 (225)
T d1im8a_ 36 FVTADSNVYDLGCSRGAATLSARRNINQPN-VKIIGIDN----SQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNAS 110 (225)
T ss_dssp HCCTTCEEEEESCTTCHHHHHHHHTCCCSS-CEEEEECS----CHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEE
T ss_pred hcCCCCEEEEeccchhhHHHHHHHhhcCCC-CceEEeCC----CHHHHHHHHHHhHhhcccchhhhccchhhccccccce
Confidence 455678999999 67888888887665556 89999998 333222 112234678888888877777788
Q ss_pred EEEEcc
Q 027129 100 QIYHLA 105 (228)
Q Consensus 100 ~vi~~a 105 (228)
+++.+.
T Consensus 111 ~i~~~~ 116 (225)
T d1im8a_ 111 MVILNF 116 (225)
T ss_dssp EEEEES
T ss_pred eeEEee
Confidence 776554
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.64 Score=29.94 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCEEEEecCc----------chhHHHHHHHHHhcCCCeEEEEcCCCCC
Q 027129 32 NMRILVTGGA----------GFIGSHLVDKLMENEKNEVIVVDNYFTG 69 (228)
Q Consensus 32 ~~~vlItGat----------G~iG~~l~~~L~~~g~~~V~~~~r~~~~ 69 (228)
.++|+|+|+. -|.+.+.++.|.+.| ++++++..++..
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g-~~~IliN~NPeT 50 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG-YETIMVNCNPET 50 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT-CEEEEECCCTTS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC-CeEEEEecChhh
Confidence 5799999973 378899999999999 999998875443
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=87.07 E-value=0.34 Score=34.91 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.2
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
.|+|+|| |..|...+..|.+.| ++|.++.+.+.
T Consensus 4 DViIIGa-G~aGl~aA~~la~~G-~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGG-GPSGLMAAIGAAEEG-ANVLLLDKGNK 36 (251)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence 4899996 999999999999999 99999988543
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.76 E-value=0.51 Score=33.91 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.9
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHh--------------------cCCCeEEEEcCCCC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLME--------------------NEKNEVIVVDNYFT 68 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~--------------------~g~~~V~~~~r~~~ 68 (228)
.++++|+|+|+ |.++..+++.|++ .+..+|+++.|+..
T Consensus 37 ~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 37 LSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp TTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred ccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 44899999985 9999999999998 36689999999543
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=86.66 E-value=0.3 Score=37.53 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
-|+|+| +|+-|..++.+|.+.| ++|.++.+-
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG-~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAG-VQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCc-CeEEEEecC
Confidence 488998 5999999999999999 999999883
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.66 Score=34.82 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=23.5
Q ss_pred CEEEEecC-c-chh--HHHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGG-A-GFI--GSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGa-t-G~i--G~~l~~~L~~~g~~~V~~~~r 65 (228)
|||+|++| | |.+ +.+|+++|.+.| |+|..+..
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G-~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQG-WQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTT-CEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCC-CEEEEEEe
Confidence 57888764 3 343 346889999999 99988765
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.20 E-value=0.28 Score=33.98 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCC-CceEEEeccCCCc-ccCCccEEEEccCCCCc
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEP-LLIEVDQIYHLACPASP 110 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~-~~~~~D~vi~~a~~~~~ 110 (228)
+|+.|+| +|.+|+..++.|...+..+|+++................. ....+ ..|..+. ...++|+|+-+......
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI-HGSYESLLEDPEIDALYVPLPTSLH 79 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEE-ESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceee-cCcHHHhhhccccceeeecccchhh
Confidence 5899999 5899999999998764378877643211111111111111 11222 1222221 12468988865421100
Q ss_pred cc-----ccCC----chhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 111 IF-----YKYN----PVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 111 ~~-----~~~~----~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
.. .... .++-+..+..-...+.+.+++.+..+ +++-
T Consensus 80 ~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~-~v~~ 124 (184)
T d1ydwa1 80 VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI-MDGT 124 (184)
T ss_dssp HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE-EECC
T ss_pred cchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE-EEEE
Confidence 00 0000 11222346666777888887766543 3443
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.19 E-value=0.49 Score=33.71 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred CEEEEecCcchhHHHHHHHHHhc--CCCeEEEEcCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYF 67 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~ 67 (228)
.+|.|+|| |--|...+++|.+. + ++|+++.+.+
T Consensus 2 ~kv~iIGa-GpaGl~aA~~L~~~~~~-~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGS-GPAGFYTAQHLLKHHSR-AHVDIYEKQL 36 (230)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSS-CEEEEECSSS
T ss_pred CeEEEECc-cHHHHHHHHHHHhcCCC-CeEEEEeCCC
Confidence 37999995 99999999999876 5 8999998854
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=85.71 E-value=0.6 Score=32.55 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=27.0
Q ss_pred CccEEEEccCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEccce
Q 027129 97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149 (228)
Q Consensus 97 ~~D~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss~~ 149 (228)
+.|+||-+.|.=..........+.+ ......+++.+++.+.++|+++...
T Consensus 71 ~~D~vvi~~G~ND~~~~~~~~~~~~---~~~l~~li~~~~~~~~~~vl~~~~~ 120 (208)
T d2o14a2 71 PGDYFMLQLGINDTNPKHKESEAEF---KEVMRDMIRQVKAKGADVILSTPQG 120 (208)
T ss_dssp TTCEEEEECCTGGGCGGGCCCHHHH---HHHHHHHHHHHHTTTCEEEEECCCC
T ss_pred CCCEEEEEcCCCcccccccccHHHH---HHHHHHHHHHHHhcCCceeeccccc
Confidence 5688877765211101112222222 3445566777777777877777654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=0.82 Score=29.72 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCEEEEecC----------cchhHHHHHHHHHhcCCCeEEEEcCCCCC
Q 027129 32 NMRILVTGG----------AGFIGSHLVDKLMENEKNEVIVVDNYFTG 69 (228)
Q Consensus 32 ~~~vlItGa----------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~ 69 (228)
.++|+|+|+ --|.+.+.++.|.+.| ++++.+..++..
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g-~~~iliN~NP~T 53 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEG-YRVINVNSNPAT 53 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT-CEEEEECSCTTC
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC-CeEEEecCchHh
Confidence 589999998 3478899999999999 999998875443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.65 E-value=1 Score=32.14 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=45.3
Q ss_pred cCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh---cCCCceEEEeccCCCc--ccCCccEEEE
Q 027129 30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEP--LLIEVDQIYH 103 (228)
Q Consensus 30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~d~~~~--~~~~~D~vi~ 103 (228)
..+.+||.+| ||||....+++ |. | .+|+++.+.+. ..+..+.. .....+.++.+|..+- .....|.|+-
T Consensus 77 ~~g~~VLeIGsGsGY~taila~-l~--g-~~V~~ie~~~~-l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv 151 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISE-IV--K-TDVYTIERIPE-LVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIV 151 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHH-HH--C-SCEEEEESCHH-HHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CccceEEEecCCCChhHHHHHH-hh--C-ceeEEEeccHH-HHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEe
Confidence 4478999988 66777665554 44 3 47889988321 11112211 2335788999998763 3346898887
Q ss_pred ccCC
Q 027129 104 LACP 107 (228)
Q Consensus 104 ~a~~ 107 (228)
.++.
T Consensus 152 ~~a~ 155 (215)
T d1jg1a_ 152 TAGA 155 (215)
T ss_dssp CSBB
T ss_pred eccc
Confidence 7654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.39 E-value=0.66 Score=34.82 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
..+++|+|-| .|-+|+++++.|.+.| .+|++++.
T Consensus 34 L~gktvaIqG-fGnVG~~~A~~L~e~G-akvv~vsD 67 (293)
T d1hwxa1 34 FGDKTFAVQG-FGNVGLHSMRYLHRFG-AKCVAVGE 67 (293)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEEc
Confidence 3478999998 5999999999999999 89988865
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=83.80 E-value=0.59 Score=35.26 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=28.1
Q ss_pred EEEEecCcchhHHHHHHHHH-----hcCCCeEEEEcCCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLM-----ENEKNEVIVVDNYFT 68 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~-----~~g~~~V~~~~r~~~ 68 (228)
-|+|+|| |-.|..++..|. +.| ++|+++.|.+.
T Consensus 9 DV~IvGa-G~aGl~lA~~La~~~~~~~G-~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGA-GPAGLMAARVLSEYVRQKPD-LKVRIIDKRST 46 (360)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHHHHSTT-CCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHhcccccCC-CcEEEEcCCCC
Confidence 4899996 999999999996 468 99999998544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=83.77 E-value=1.1 Score=31.94 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=42.4
Q ss_pred hccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc--CCccEEEEc
Q 027129 28 FFQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--IEVDQIYHL 104 (228)
Q Consensus 28 ~~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~D~vi~~ 104 (228)
...++++||=+| |+|.... .|.+.| ++|++++. +...+........-..+++|..+..+ ...|+|+.+
T Consensus 39 ~~~~~~~vLDiGcG~G~~~~----~l~~~~-~~v~giD~----s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~ 109 (246)
T d2avna1 39 YLKNPCRVLDLGGGTGKWSL----FLQERG-FEVVLVDP----SKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL 109 (246)
T ss_dssp HCCSCCEEEEETCTTCHHHH----HHHTTT-CEEEEEES----CHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEEC
T ss_pred hcCCCCEEEEECCCCchhcc----cccccc-eEEEEeec----ccccccccccccccccccccccccccccccccceeee
Confidence 345678999998 4555444 445668 89999998 34333322222223456777766543 368988876
Q ss_pred c
Q 027129 105 A 105 (228)
Q Consensus 105 a 105 (228)
.
T Consensus 110 ~ 110 (246)
T d2avna1 110 G 110 (246)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Hypothetical protein YckF species: Bacillus subtilis [TaxId: 1423]
Probab=83.41 E-value=2.4 Score=29.13 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=51.6
Q ss_pred hhccCCCEEEEec--CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEc
Q 027129 27 KFFQSNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 27 ~~~~~~~~vlItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
+.+.+.++|.|+| .++.++..+..+|...| ..+..+.- .......+-|++|-.
T Consensus 32 ~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg-~~~~~~~d------------------------~~~~~~~~~Dl~I~i 86 (186)
T d1m3sa_ 32 DHILSSHQIFTAGAGRSGLMAKSFAMRLMHMG-FNAHIVGE------------------------ILTPPLAEGDLVIIG 86 (186)
T ss_dssp HHHHHCSCEEEECSHHHHHHHHHHHHHHHHTT-CCEEETTS------------------------TTCCCCCTTCEEEEE
T ss_pred HHHHcCCeEEEEECcHHHHHHHHHHHHHHhcc-CCCCcCCh------------------------hhcccCCCCCEEEEe
Confidence 3444568999998 56778888888888888 66655321 111112345777765
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
...+. ..-+..+++.+++.|+++|.+++
T Consensus 87 S~sG~---------------t~~~i~~~~~ak~~g~~iI~IT~ 114 (186)
T d1m3sa_ 87 SGSGE---------------TKSLIHTAAKAKSLHGIVAALTI 114 (186)
T ss_dssp CSSSC---------------CHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCccc---------------hhhhHHHHHHHHHCCCCEEEEec
Confidence 53221 22345777888899998887765
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=83.38 E-value=0.62 Score=36.16 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=24.6
Q ss_pred CEEEEecC------cchhH---HHHHHHHHhcCCCeEEEEcC
Q 027129 33 MRILVTGG------AGFIG---SHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 33 ~~vlItGa------tG~iG---~~l~~~L~~~g~~~V~~~~r 65 (228)
|||++++. +|++| ..|+++|.+.| |+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~G-h~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLG-HEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTT-CEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcC-CEEEEEec
Confidence 67777663 46665 66789999999 99999864
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=83.33 E-value=0.57 Score=32.93 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=27.5
Q ss_pred EEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
++|+|| |+.|...+.++.+.| .+|.++.+.
T Consensus 5 vvVIG~-G~aG~~aA~~a~~~G-~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGG-GSGGIASINRAAMYG-QKCALIEAK 34 (217)
T ss_dssp EEEECC-SHHHHHHHHHHHTTT-CCEEEEESS
T ss_pred EEEECC-CHHHHHHHHHHHHCC-CEEEEEecc
Confidence 799996 999999999999999 999999873
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.18 E-value=2.6 Score=29.76 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=42.8
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhh-----------------------cCCCceEEE
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-----------------------IGHPRFELI 86 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-----------------------~~~~~~~~~ 86 (228)
+.+.+||..|. |- | ..+..|.+.| ++|++++-+ .+.+... .....+++.
T Consensus 44 ~~~~rvLd~GC-G~-G-~~a~~LA~~G-~~V~gvD~S----~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 44 KSGLRVFFPLC-GK-A-VEMKWFADRG-HSVVGVEIS----ELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp CCSCEEEETTC-TT-C-THHHHHHHTT-CEEEEECSC----HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred CCCCEEEEeCC-CC-c-HHHHHHHhCC-CcEEEEeCC----HHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 45789999983 22 3 3355566789 999999884 3222111 112367888
Q ss_pred eccCCCccc---CCccEEEEccC
Q 027129 87 RHDVTEPLL---IEVDQIYHLAC 106 (228)
Q Consensus 87 ~~d~~~~~~---~~~D~vi~~a~ 106 (228)
.+|+.+... ...|+|+..+.
T Consensus 116 ~~d~~~l~~~~~~~fd~i~~~~~ 138 (229)
T d2bzga1 116 CCSIFDLPRTNIGKFDMIWDRGA 138 (229)
T ss_dssp ESCGGGGGGSCCCCEEEEEESSS
T ss_pred EcchhhccccccCceeEEEEEEE
Confidence 888876532 25777776654
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.05 E-value=0.56 Score=36.01 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=27.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
-|+|+| +|+-|..++.+|.+.| ++|.++.+-
T Consensus 9 dvIVVG-sG~aG~v~A~rLaeaG-~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIG-SGYGGAVAALRLTQAG-IPTQIVEMG 39 (370)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 488998 5999999999999999 999999873
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=83.05 E-value=0.18 Score=33.85 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=30.2
Q ss_pred EEecCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEcc
Q 027129 36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA 105 (228)
Q Consensus 36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~a 105 (228)
-++| +|-+|+++++.|.+.+ +.+.+..| +.++.+.+.+...... .+ ......+.|+||-+.
T Consensus 3 gfIG-~G~mg~~l~~~L~~~~-~~~~v~~R----~~~~~~~l~~~~~~~~--~~-~~~~~~~~DiVil~v 63 (153)
T d2i76a2 3 NFVG-TGTLTRFFLECLKDRY-EIGYILSR----SIDRARNLAEVYGGKA--AT-LEKHPELNGVVFVIV 63 (153)
T ss_dssp EEES-CCHHHHHHHHTTC-----CCCEECS----SHHHHHHHHHHTCCCC--CS-SCCCCC---CEEECS
T ss_pred EEEe-CcHHHHHHHHHHHhCC-CEEEEEeC----Chhhhcchhhcccccc--cc-hhhhhccCcEEEEec
Confidence 3566 6999999999886544 44456777 4444433322111111 12 223345789998765
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=82.48 E-value=0.73 Score=33.87 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.1
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.++++|.|-| .|-+|+++++.|.+.| .+|+++.-
T Consensus 34 l~g~~v~IQG-fGnVG~~~a~~L~e~G-akvvavsD 67 (255)
T d1bgva1 34 LVGKTVALAG-FGNVAWGAAKKLAELG-AKAVTLSG 67 (255)
T ss_dssp STTCEEEECC-SSHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcC-CeEEEEec
Confidence 4579999998 6999999999999999 89988754
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.37 E-value=0.39 Score=32.30 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.6
Q ss_pred cCCCEEEEecCcchhHHHHHHHHHhcC
Q 027129 30 QSNMRILVTGGAGFIGSHLVDKLMENE 56 (228)
Q Consensus 30 ~~~~~vlItGatG~iG~~l~~~L~~~g 56 (228)
..+++|+|+|| |++|..++..+.+.|
T Consensus 27 ~~gkrVvVIGg-G~~g~d~a~~~~r~G 52 (162)
T d1ps9a2 27 PVGNKVAIIGC-GGIGFDTAMYLSQPG 52 (162)
T ss_dssp CCCSEEEEECC-HHHHHHHHHHHTCCS
T ss_pred ccCCceEEEcC-chhHHHHHHHHHHcC
Confidence 44789999996 999999999999998
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=82.28 E-value=2.3 Score=30.16 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=51.3
Q ss_pred CEEEEecCcchhHH-HHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEE-eccCCCc-ccCCccEEEEccCCCC
Q 027129 33 MRILVTGGAGFIGS-HLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELI-RHDVTEP-LLIEVDQIYHLACPAS 109 (228)
Q Consensus 33 ~~vlItGatG~iG~-~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~d~~~~-~~~~~D~vi~~a~~~~ 109 (228)
-+|.|+| +|.+|+ +++..+......+|+++........+...+.......... ..|+.+. ...++|+|+-+.....
T Consensus 34 iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 34 FGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 112 (221)
T ss_dssp EEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred EEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhh
Confidence 4899998 589996 5666665543267776643211111111111111111111 1222221 1236898887653211
Q ss_pred ccc-------ccCC--chhhHHhhHHHHHHHHHHHHHcCCe
Q 027129 110 PIF-------YKYN--PVKTIKTNVIGTLNMLGLAKRVGAR 141 (228)
Q Consensus 110 ~~~-------~~~~--~~~~~~~n~~~~~~l~~~~~~~~~r 141 (228)
... ...+ .++=+..|..-...+.+.+++.++.
T Consensus 113 H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~ 153 (221)
T d1h6da1 113 HAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK 153 (221)
T ss_dssp HHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCc
Confidence 000 0000 1122345666777888888777654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.17 E-value=0.71 Score=35.13 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=27.5
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.|+|+| +|.-|..++.+|.+.| ++|.++.+
T Consensus 6 DviIVG-sG~aG~v~A~~La~~G-~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVG-SGPIGCTYARELVGAG-YKVAMFDI 35 (379)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred cEEEEC-cCHHHHHHHHHHhhCC-CeEEEEec
Confidence 589998 5999999999999999 99999976
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=82.08 E-value=2.8 Score=26.79 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
+|+|+|.|+ |--+-.-+..|.+-. .+|+++.|.+.
T Consensus 30 gk~V~VvGg-G~sA~~~A~~L~~~a-~~V~li~r~~~ 64 (126)
T d1fl2a2 30 GKRVAVIGG-GNSGVEAAIDLAGIV-EHVTLLEFAPE 64 (126)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTB-SEEEEECSSSS
T ss_pred CceEEEEeC-CHHHHHHHHhhhccC-CceEEEecccc
Confidence 899999996 777777777888776 89999988544
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=82.07 E-value=1.2 Score=31.30 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=26.9
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCCCeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r 65 (228)
.|||+++| ++..+..+.+.|++.+ ++|.++..
T Consensus 3 ~mKI~f~G-~~~~~~~~L~~L~~~~-~~i~~Vit 34 (206)
T d1fmta2 3 SLRIIFAG-TPDFAARHLDALLSSG-HNVVGVFT 34 (206)
T ss_dssp CCEEEEEE-CSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CcEEEEEC-CCHHHHHHHHHHHhCC-CCEEEEEe
Confidence 58899998 5788999999999999 88877764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.92 E-value=0.72 Score=32.62 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=26.6
Q ss_pred CCEEEEecCcchhHHHHHHHHHhcCC-CeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r 65 (228)
-.+++|.|| |+.|-.++..|.+.+. .+|+++.+
T Consensus 4 ~~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~ 37 (213)
T d1m6ia1 4 HVPFLLIGG-GTAAFAAARSIRARDPGARVLIVSE 37 (213)
T ss_dssp EEEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 356889986 9999999999988762 46888865
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=81.71 E-value=0.61 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=29.8
Q ss_pred CEEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCCC
Q 027129 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68 (228)
Q Consensus 33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~ 68 (228)
..|+|+|| |-.|...+..|.+.| .+|.++.+.+.
T Consensus 5 ~DViIIGa-G~aGl~aA~~la~~G-~~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGA-GAAGLFCAAQLAKLG-KSVTVFDNGKK 38 (253)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred CcEEEECc-CHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence 35999996 999999999999999 99999998543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=81.37 E-value=1.3 Score=31.82 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=48.4
Q ss_pred ccCCCEEEEec-CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCccc-----CCccEEE
Q 027129 29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIY 102 (228)
Q Consensus 29 ~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~D~vi 102 (228)
+..+++||=.| |+|..-.++++..-..| .|++++..+...............+..+..|..+... ..+|+|+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G--~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEG--KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCC--EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEE
Confidence 34589999998 78888899998665666 9999998322212211222233457777777765432 3567777
Q ss_pred Ecc
Q 027129 103 HLA 105 (228)
Q Consensus 103 ~~a 105 (228)
+..
T Consensus 149 ~d~ 151 (227)
T d1g8aa_ 149 EDV 151 (227)
T ss_dssp ECC
T ss_pred EEc
Confidence 643
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.31 E-value=0.74 Score=34.27 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=28.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~ 67 (228)
.|+|+|+ |..|...+..|.+.| .+|.++.+..
T Consensus 18 DVlVIG~-G~aGl~aA~~la~~G-~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGS-GGAGFSAAISATDSG-AKVILIEKEP 49 (308)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCC-CcEEEEecCC
Confidence 4999995 999999999999999 9999998743
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=81.25 E-value=0.82 Score=33.61 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.3
Q ss_pred EEEEecCcchhHHHHHHHHHhc-CCCeEEEEcCCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYF 67 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~ 67 (228)
.|+|+|| |.-|...+..|.++ | ++|.++.+.+
T Consensus 35 DViVIGa-GpaGL~aA~~LA~~~G-~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGA-GSAGLSAAYEISKNPN-VQVAIIEQSV 67 (278)
T ss_dssp EEEEECC-SHHHHHHHHHHHTSTT-SCEEEEESSS
T ss_pred CEEEECC-CHHHHHHHHHHHHccC-CeEEEEecCC
Confidence 5999997 99999999999874 9 9999999853
|
| >d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YjeF N-terminal domain-like superfamily: YjeF N-terminal domain-like family: YjeF N-terminal domain-like domain: Hypothetical protein TM0922, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.34 E-value=3.1 Score=29.34 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCEEEEe---cCcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhh--hcCCCceEEEeccCCCcccCCccEEEEccC
Q 027129 32 NMRILVT---GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106 (228)
Q Consensus 32 ~~~vlIt---GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~D~vi~~a~ 106 (228)
.++|+|. |-+|.=|..++++|...| ++|.++........+.... ........... +.......+.|+||.+.-
T Consensus 40 ~~~vlvl~G~GNNGGDGl~~Ar~L~~~g-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dlIIDal~ 117 (211)
T d2ax3a2 40 DYRFLVLCGGGNNGGDGFVVARNLLGVV-KDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVE-QFEPSILNEFDVVVDAIF 117 (211)
T ss_dssp TCEEEEEECSSHHHHHHHHHHHHHTTTS-SEEEEEECCSSCCHHHHHHHHHHHHTTCCEES-CCCGGGGGGCSEEEEESC
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhcC-CeeEEEecCccCCcHHHHHHHHHHHcCCcccc-ccccccccCceEEEEecc
Confidence 4566665 346677889999999999 9998887644433322111 11111222221 112223457899998762
Q ss_pred CCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEc
Q 027129 107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146 (228)
Q Consensus 107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~S 146 (228)
-+. ........ ...+++++.+.+..++-+-
T Consensus 118 G~G---l~~~l~~~-------~~~~i~~iN~~~~~vlsiD 147 (211)
T d2ax3a2 118 GTG---LRGEITGE-------YAEIINLVNKSGKVVVSVD 147 (211)
T ss_dssp CTT---CCSCCCHH-------HHHHHHHHHHSCCEEEEES
T ss_pred cCC---ccccchHH-------HHHHHHHHHhhccceeeec
Confidence 111 12222222 2366667767666655444
|
| >d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: mono-SIS domain domain: Probable 3-hexulose-6-phosphate isomerase MJ1247 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.25 E-value=2.5 Score=28.75 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=51.5
Q ss_pred hhccCCCEEEEec--CcchhHHHHHHHHHhcCCCeEEEEcCCCCCCchhhhhhcCCCceEEEeccCCCcccCCccEEEEc
Q 027129 27 KFFQSNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL 104 (228)
Q Consensus 27 ~~~~~~~~vlItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~D~vi~~ 104 (228)
+.+.+.++|.++| .++.++..+...|.+-| ..+..+... . .....+-|++|-.
T Consensus 32 ~~i~~a~~I~~~G~G~S~~~a~~~~~~l~~lg-~~~~~~~~~----~--------------------~~~~~~~Dl~I~i 86 (177)
T d1jeoa_ 32 DRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLG-FKSYFVGET----T--------------------TPSYEKDDLLILI 86 (177)
T ss_dssp HHHHHCSSEEEECCHHHHHHHHHHHHHHHHTT-CCEEETTST----T--------------------CCCCCTTCEEEEE
T ss_pred HHHHCCCeEEEEEccHHHHHHHHHHHHHHhcC-Ccccccccc----c--------------------ccccCCCCeEEEe
Confidence 3444568899997 68888999999999988 666554331 0 0012244666665
Q ss_pred cCCCCcccccCCchhhHHhhHHHHHHHHHHHHHcCCeEEEEcc
Q 027129 105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147 (228)
Q Consensus 105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~r~i~~Ss 147 (228)
...+. ..-+..+++.+++.|+++|.+++
T Consensus 87 S~sG~---------------t~~~i~~~~~ak~~g~~vI~IT~ 114 (177)
T d1jeoa_ 87 SGSGR---------------TESVLTVAKKAKNINNNIIAIVC 114 (177)
T ss_dssp ESSSC---------------CHHHHHHHHHHHTTCSCEEEEES
T ss_pred ccccc---------------hHHHHHHHHHHHHcCCceeEEec
Confidence 53222 22235677888888988777765
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.18 E-value=0.93 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.8
Q ss_pred EEEEecCcchhHHHHHHHHHhcCCCeEEEEcCC
Q 027129 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66 (228)
Q Consensus 34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~ 66 (228)
-|+|+|| |..|...+..+.+.| .+|.++.+.
T Consensus 5 DvvVIGg-GpaGl~aA~~aa~~G-~kV~vie~~ 35 (221)
T d1dxla1 5 DVVIIGG-GPGGYVAAIKAAQLG-FKTTCIEKR 35 (221)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHT-CCEEEEECS
T ss_pred CEEEECC-CHHHHHHHHHHHHCC-CcEEEEEec
Confidence 3899996 999999999999999 999999873
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=80.11 E-value=2 Score=29.34 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCEEEEecCcchhHHH-HHHHHHhcCC-CeEEEEcC
Q 027129 32 NMRILVTGGAGFIGSH-LVDKLMENEK-NEVIVVDN 65 (228)
Q Consensus 32 ~~~vlItGatG~iG~~-l~~~L~~~g~-~~V~~~~r 65 (228)
.+++.|+| +|.+|+. .+..+.+.+. .+|+++..
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d 37 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTS 37 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEEC
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 45899998 5999986 4666665432 47776643
|