Citrus Sinensis ID: 027173

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
MSVTCSGSFPDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccc
ccccHHHHHHHHHcHHccccccccccccccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHcEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHcc
msvtcsgsfpdllcgedsgifagesspacsssdlessaSIEESIAGFiedernfvpgfdyltrfqthsldasAREESVAWILKVQAYYNFLPLTSYLSVNYMDrflysrrlpdnngwpwQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWrlrsvtpfsFIYFFAckldptgtfMGFLISRATKIILSNiqgenhqllpvnattra
msvtcsgsfpdLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSniqgenhqllpvnattra
MSVTCSGSFPDLLCGEDSGIFAGesspacsssdlessasieesiagfieDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA
************LC*****************************IAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGEN************
******G***DLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA
********FPDLLCGEDSGIFAG****************IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA
*SVTCSGSFPDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSVTCSGSFPDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query227 2.2.26 [Sep-21-2011]
P42751 339 Cyclin-D1-1 OS=Arabidopsi yes no 0.920 0.616 0.735 2e-85
Q0J233308 Cyclin-D2-1 OS=Oryza sati yes no 0.762 0.561 0.578 6e-53
Q8H339354 Cyclin-D1-2 OS=Oryza sati yes no 0.748 0.480 0.580 3e-50
Q67V81363 Cyclin-D1-1 OS=Oryza sati yes no 0.599 0.374 0.627 6e-44
P42752 361 Cyclin-D2-1 OS=Arabidopsi no no 0.753 0.473 0.491 2e-41
Q6YXH8356 Cyclin-D4-1 OS=Oryza sati yes no 0.845 0.539 0.451 4e-40
Q4KYM5 383 Cyclin-D4-2 OS=Oryza sati no no 0.762 0.451 0.468 1e-39
Q8LHA8 356 Cyclin-D2-2 OS=Oryza sati no no 0.660 0.421 0.52 2e-39
Q10K98 405 Putative cyclin-D2-3 OS=O no no 0.744 0.417 0.465 3e-39
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.872 0.642 0.422 7e-39
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function desciption
 Score =  315 bits (806), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/212 (73%), Positives = 181/212 (85%), Gaps = 3/212 (1%)

Query: 1   MSVTCSGSFPDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDY 60
           MSV+ S    DL CGEDSG+F+GES+   SSS+++S     +SIA FIEDER+FVPG DY
Sbjct: 12  MSVSFSNDM-DLFCGEDSGVFSGESTVDFSSSEVDSWPG--DSIACFIEDERHFVPGHDY 68

Query: 61  LTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120
           L+RFQT SLDASARE+SVAWILKVQAYYNF PLT+YL+VNYMDRFLY+RRLP+ +GWP Q
Sbjct: 69  LSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQ 128

Query: 121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFS 180
           LL+VACLSLAAKMEE +VPSL D QV G KY+FE KTI+RMELLVLSVLDWRLRSVTPF 
Sbjct: 129 LLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFD 188

Query: 181 FIYFFACKLDPTGTFMGFLISRATKIILSNIQ 212
           FI FFA K+DP+GTF+GF IS AT+IILSNI+
Sbjct: 189 FISFFAYKIDPSGTFLGFFISHATEIILSNIK 220
May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.
Arabidopsis thaliana (taxid: 3702)
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1 Back     alignment and function description
>sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3 Back     alignment and function description
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3 PE=3 SV=1 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
225424764324 PREDICTED: cyclin-D1-1 [Vitis vinifera] 0.925 0.648 0.801 9e-91
356501290 339 PREDICTED: cyclin-D1-1-like [Glycine max 0.920 0.616 0.787 3e-88
255581192 386 cyclin d, putative [Ricinus communis] gi 0.929 0.546 0.784 5e-88
224108117327 predicted protein [Populus trichocarpa] 0.903 0.626 0.794 2e-87
224102013 328 predicted protein [Populus trichocarpa] 0.903 0.625 0.789 4e-86
359359230327 D1-type cyclin [Populus x canadensis] 0.903 0.626 0.784 3e-85
356498000 339 PREDICTED: cyclin-D1-1-like [Glycine max 0.925 0.619 0.780 4e-85
25989347315 cyclin D1 [Helianthus tuberosus] 0.929 0.669 0.731 2e-84
2995130 335 cyclin delta-1 [Arabidopsis thaliana] 0.920 0.623 0.735 8e-84
15223075 339 cyclin-D1-1 [Arabidopsis thaliana] gi|59 0.920 0.616 0.735 1e-83
>gi|225424764|ref|XP_002268394.1| PREDICTED: cyclin-D1-1 [Vitis vinifera] gi|296086502|emb|CBI32091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 170/212 (80%), Positives = 187/212 (88%), Gaps = 2/212 (0%)

Query: 1   MSVTCSGSFPDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDY 60
           MS++ S  F DLLCGEDS I +G+  P CSS DLES   IEESIAGFIEDERNFVPGFDY
Sbjct: 1   MSLSYSDRFSDLLCGEDSSILSGDL-PECSS-DLESPTDIEESIAGFIEDERNFVPGFDY 58

Query: 61  LTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120
           L RF++HSLDASAREESVAWILKVQAY+ F PLT+YLSVNY+DRFLYSRRLP  NGWP Q
Sbjct: 59  LARFRSHSLDASAREESVAWILKVQAYHGFQPLTAYLSVNYLDRFLYSRRLPQTNGWPLQ 118

Query: 121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFS 180
           LLSVACLSLAAKMEE +VPSLLDLQVEGAK+IFE+KTIRRMELLVL VLDWRLRS+TPFS
Sbjct: 119 LLSVACLSLAAKMEEPLVPSLLDLQVEGAKFIFESKTIRRMELLVLGVLDWRLRSITPFS 178

Query: 181 FIYFFACKLDPTGTFMGFLISRATKIILSNIQ 212
           FI FFA KLD +G+ +GFLISRAT+IILSNIQ
Sbjct: 179 FIGFFAYKLDSSGSVIGFLISRATQIILSNIQ 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356501290|ref|XP_003519458.1| PREDICTED: cyclin-D1-1-like [Glycine max] Back     alignment and taxonomy information
>gi|255581192|ref|XP_002531409.1| cyclin d, putative [Ricinus communis] gi|223529002|gb|EEF30993.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224108117|ref|XP_002314728.1| predicted protein [Populus trichocarpa] gi|159025699|emb|CAN88850.1| D1-type cyclin [Populus trichocarpa] gi|222863768|gb|EEF00899.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102013|ref|XP_002312511.1| predicted protein [Populus trichocarpa] gi|159025697|emb|CAN88849.1| D1-type cyclin [Populus trichocarpa] gi|222852331|gb|EEE89878.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359359230|gb|AEV41133.1| D1-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|356498000|ref|XP_003517843.1| PREDICTED: cyclin-D1-1-like [Glycine max] Back     alignment and taxonomy information
>gi|25989347|gb|AAL47479.1| cyclin D1 [Helianthus tuberosus] Back     alignment and taxonomy information
>gi|2995130|emb|CAA58285.1| cyclin delta-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15223075|ref|NP_177178.1| cyclin-D1-1 [Arabidopsis thaliana] gi|59802916|sp|P42751.3|CCD11_ARATH RecName: Full=Cyclin-D1-1; AltName: Full=Cyclin-delta-1; Short=Cyclin-d1; AltName: Full=G1/S-specific cyclin-D1-1; Short=CycD1;1 gi|2194121|gb|AAB61096.1| Strong similarity to Arabidopsis cyclin delta-1 (gb|ATCD1). EST gb|ATTS4338 comes from this gene [Arabidopsis thaliana] gi|26449478|dbj|BAC41865.1| unknown protein [Arabidopsis thaliana] gi|28950911|gb|AAO63379.1| At1g70210 [Arabidopsis thaliana] gi|332196913|gb|AEE35034.1| cyclin-D1-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query227
TAIR|locus:2020663 339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.920 0.616 0.679 1.1e-71
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.718 0.546 0.451 1.3e-31
TAIR|locus:2083128 361 CYCD3;3 "AT3G50070" [Arabidops 0.607 0.382 0.5 6.2e-30
TAIR|locus:2124331 376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.607 0.367 0.471 1e-29
TAIR|locus:2157172 367 CYCD3;2 "AT5G67260" [Arabidops 0.484 0.299 0.572 3.4e-29
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.555 0.390 0.393 3e-21
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.577 0.433 0.392 5.7e-20
UNIPROTKB|Q10QA2345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.497 0.327 0.427 1.5e-19
TAIR|locus:2185178 341 CYCD7;1 "AT5G02110" [Arabidops 0.599 0.398 0.297 9.8e-16
TAIR|locus:2031407442 CYCA1;2 "CYCLIN A1;2" [Arabido 0.555 0.285 0.374 2.9e-13
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 144/212 (67%), Positives = 164/212 (77%)

Query:     1 MSVTCSGSFPDLLCGEDSGIFAGXXXXXXXXXXXXXXXXXXXXXXXXXXDERNFVPGFDY 60
             MSV+ S    DL CGEDSG+F+G                          DER+FVPG DY
Sbjct:    12 MSVSFSNDM-DLFCGEDSGVFSGESTVDFSSSEVDSWPGDSIACFIE--DERHFVPGHDY 68

Query:    61 LTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120
             L+RFQT SLDASARE+SVAWILKVQAYYNF PLT+YL+VNYMDRFLY+RRLP+ +GWP Q
Sbjct:    69 LSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQ 128

Query:   121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFS 180
             LL+VACLSLAAKMEE +VPSL D QV G KY+FE KTI+RMELLVLSVLDWRLRSVTPF 
Sbjct:   129 LLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFD 188

Query:   181 FIYFFACKLDPTGTFMGFLISRATKIILSNIQ 212
             FI FFA K+DP+GTF+GF IS AT+IILSNI+
Sbjct:   189 FISFFAYKIDPSGTFLGFFISHATEIILSNIK 220
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2185178 CYCD7;1 "AT5G02110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031407 CYCA1;2 "CYCLIN A1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42751CCD11_ARATHNo assigned EC number0.73580.92070.6165yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028896001
SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (324 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 8e-37
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 1e-16
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-14
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 4e-14
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  125 bits (316), Expect = 8e-37
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 42  ESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNY 101
           +  A   E E    P  DYL +     ++   R   + W+++V   +  LP T YL+VNY
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPD--INPKMRAILIDWLVEVHEEFKLLPETLYLAVNY 58

Query: 102 MDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRM 161
           +DRFL  + +P       QL+ V CL +AAK EE   PS+ D         +  + I RM
Sbjct: 59  LDRFLSKQPVPRTK---LQLVGVTCLLIAAKYEEIYPPSVEDFVYI-TDNAYTKEEILRM 114

Query: 162 ELLVLSVLDWRLR 174
           ELL+LS L+W L 
Sbjct: 115 ELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 227
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.98
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.95
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.87
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 99.77
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.68
KOG0835 367 consensus Cyclin L [General function prediction on 99.66
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.56
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.48
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 99.37
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.13
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.87
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.34
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 98.28
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.26
KOG1597308 consensus Transcription initiation factor TFIIB [T 97.74
KOG1674218 consensus Cyclin [General function prediction only 97.41
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.51
KOG1675343 consensus Predicted cyclin [General function predi 94.7
KOG1598 521 consensus Transcription initiation factor TFIIIB, 94.37
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.21
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 93.51
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 91.23
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 89.85
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 84.26
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 83.75
PF09080106 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IP 80.44
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-45  Score=315.79  Aligned_cols=216  Identities=43%  Similarity=0.651  Sum_probs=192.2

Q ss_pred             ccccccccccccC---CCCCCCCCCCCC---CCcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHH
Q 027173           11 DLLCGEDSGIFAG---ESSPACSSSDLE---SSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKV   84 (227)
Q Consensus        11 ~l~c~e~~~~~~~---~~~p~~~~~d~~---~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v   84 (227)
                      .|+|+|.+.....   .+++...-.++.   ..-+++|.+.+|+++|..+.|..+|...+|. .+++.+|.++++||.+|
T Consensus        10 ~l~c~E~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~e~~i~~ll~kEe~~~p~~~~~~~~~~-~~~~~~R~~A~~WIl~V   88 (335)
T KOG0656|consen   10 QLLCHEESTSDEQDRADNDESSTESSIPQLGFLLWDERVLANLLEKEEQHNPSLDYFLCVQK-LILSSMRKQALDWILKV   88 (335)
T ss_pred             ccccCCCCcccccccccCCcccccccccccccccccHHHHHHHHHHHHHhCCCCchhhhccc-ccccHHHHHHHHHHHHH
Confidence            4899997664432   111111111111   1357899999999999999999997777654 59999999999999999


Q ss_pred             HHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHH
Q 027173           85 QAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELL  164 (227)
Q Consensus        85 ~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~  164 (227)
                      |.++++.++|+++|+||||||++.+++++.++|.+||+|++||+||+|+||..+|.+.++....+++.|..+.|.+||+.
T Consensus        89 ~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rmELL  168 (335)
T KOG0656|consen   89 CEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRMELL  168 (335)
T ss_pred             HHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHHHHH
Confidence            99999999999999999999999999999989999999999999999999999999999998889999999999999999


Q ss_pred             HHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173          165 VLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA  227 (227)
Q Consensus       165 IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A  227 (227)
                      ||++|+|+++.+||++|+++|+++++..+...+.+..++..++.+..+|+.|+.|+||+||+|
T Consensus       169 VLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa  231 (335)
T KOG0656|consen  169 VLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDIKFLEYPPSVIAAA  231 (335)
T ss_pred             HHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhhhhhcCChHHHHHH
Confidence            999999999999999999999999999988889999999999999999999999999999986

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF09080 K-cyclin_vir_C: K cyclin, C terminal; InterPro: IPR015164 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 6e-08
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 6e-08
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 7e-08
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 7e-08
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 8e-08
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 8e-08
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 9e-08
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 9e-08
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 9e-08
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-08
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 9e-08
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-08
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 9e-08
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-08
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-07
1vin_A268 Bovine Cyclin A3 Length = 268 1e-07
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-07
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-07
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-07
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 1e-07
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 4e-06
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 7e-06
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-05
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-04
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-04
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 6e-04
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 56  PGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNN 115
           P   Y+ R     +  S R   V W+++V   Y     T +L+VNY+DRFL S  +    
Sbjct: 24  PKVGYMKR--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK 81
Query: 116 GWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRS 175
               QL+  A + LA+K EE   P + +  V      +  K + RME LVL VL + L +
Sbjct: 82  ---LQLVGTAAMLLASKFEEIYPPEVAEF-VYITDDTYSKKQVLRMEHLVLKVLAFDLAA 137
Query: 176 VTPFSFI--YFFA-----CKLDPTGTFMGFL 199
            T   F+  YF       CK++    F+G L
Sbjct: 138 PTVNQFLTQYFLHLQPANCKVESLAMFLGEL 168
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query227
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 6e-38
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 5e-35
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-26
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-23
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-23
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 4e-23
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 4e-22
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-21
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 4e-10
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 3e-08
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-06
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-06
2ivx_A257 Cyclin-T2; transcription regulation, cell division 2e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score =  132 bits (335), Expect = 6e-38
 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 12/179 (6%)

Query: 11  DLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLD 70
           +LLC E +         A  +         +  +   +  E  +VP   Y    Q   + 
Sbjct: 16  ELLCCEGT-------RHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQRE-IK 67

Query: 71  ASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLA 130
              R+    W+L+V            L++NY+DR+L             QLL   C+ LA
Sbjct: 68  PHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ---LQLLGAVCMLLA 124

Query: 131 AKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKL 189
           +K+ ET   ++  L      +    + +R  E+LVL  L W L +V    F+ F   +L
Sbjct: 125 SKLRETTPLTIEKL-CIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRL 182
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.98
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.97
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.96
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.96
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.96
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.95
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.87
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.74
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.47
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.91
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.83
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.6
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.69
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 89.48
2ivx_A257 Cyclin-T2; transcription regulation, cell division 89.23
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 88.14
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 85.83
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 84.54
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 83.46
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 80.35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-46  Score=326.85  Aligned_cols=209  Identities=23%  Similarity=0.363  Sum_probs=172.6

Q ss_pred             CCCCCcccccccccc--ccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHH
Q 027173            4 TCSGSFPDLLCGEDS--GIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWI   81 (227)
Q Consensus         4 ~~~~~~~~l~c~e~~--~~~~~~~~p~~~~~d~~~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm   81 (227)
                      +.|+.+ +|+|+|+.  .....+| |...        +++|++++|+++|.++.|+++|++..| +++++.||.++++||
T Consensus        10 ~~~~~~-~l~~~e~~~~~~~a~~d-p~l~--------~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl   78 (306)
T 3g33_B           10 SPGGSM-ELLCCEGTRHAPRAGPD-PRLL--------GDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWM   78 (306)
T ss_dssp             -------------------------------------CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHH
T ss_pred             CCCCCc-ceeeecccccccccCCC-Cccc--------chHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHH
Confidence            346676 79999943  2555555 4433        788999999999999999999998655 469999999999999


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCchhHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHH
Q 027173           82 LKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRM  161 (227)
Q Consensus        82 ~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~  161 (227)
                      ++|+.+|+++++|+++||+|||||+++..+.+.   ++|++|+|||+||+|+||..+|.+.+++. .+++.|++++|++|
T Consensus        79 ~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~---~lqLv~~tcL~lAsK~eE~~p~~~~~l~~-~~~~~~~~~~i~~m  154 (306)
T 3g33_B           79 LEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA---QLQLLGAVCMLLASKLRETTPLTIEKLCI-YTDHAVSPRQLRDW  154 (306)
T ss_dssp             HHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG---GHHHHHHHHHHHHHHHHCSSCCCTTHHHH-HTTTSSCHHHHHHH
T ss_pred             HHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHH-HhccCccHHHHHHH
Confidence            999999999999999999999999999999887   89999999999999999999999999985 68889999999999


Q ss_pred             HHHHHHHcCCcccCCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccccccccccchhccC
Q 027173          162 ELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQGENHQLLPVNATTRA  227 (227)
Q Consensus       162 E~~IL~~L~~~l~~pTp~~fl~~~l~~l~~~~~~~~~i~~~a~~~l~~~l~d~~fl~~~PS~~A~A  227 (227)
                      |+.||++|+|+++.|||++|+.+|++.++..+.....+...+.++++.++.++.|+.|+||+||+|
T Consensus       155 E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaA  220 (306)
T 3g33_B          155 EVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATG  220 (306)
T ss_dssp             HHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHH
T ss_pred             HHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHH
Confidence            999999999999999999999999999887765556677889999999999999999999999986
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 227
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-28
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 3e-28
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 6e-27
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 1e-26
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 4e-25
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-20
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-17
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-15
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

 Score =  101 bits (254), Expect = 3e-28
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 41  EESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVN 100
           +      +E E  F+        FQ   L +  R+    W+  V   YN  P    L++N
Sbjct: 4   DRIFYNILEIEPRFLTSDSVFGTFQQS-LTSHMRKLLGTWMFSVCQEYNLEPNVVALALN 62

Query: 101 YMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRR 160
            +DR L  +++   +   +Q    ACL +A+K+      S   L    A   F  + +  
Sbjct: 63  LLDRLLLIKQVSKEH---FQKTGSACLLVASKLRSLTPISTSSL-CYAAADSFSRQELID 118

Query: 161 MELLVLSVLDWRL 173
            E  +L  L WR 
Sbjct: 119 QEKELLEKLAWRT 131
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query227
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 100.0
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.86
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 97.98
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.92
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.82
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.45
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.81
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 96.81
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 95.97
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.8
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.49
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 94.94
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.2
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=100.00  E-value=4.2e-36  Score=228.97  Aligned_cols=131  Identities=25%  Similarity=0.360  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHhcCccCCCCCch
Q 027173           39 SIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWP  118 (227)
Q Consensus        39 ~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lv~wm~~v~~~~~l~~etl~lAv~~~Drfls~~~i~~~~~~~  118 (227)
                      .++|++++|++.|.++.|+++|+..+|+ ++++.+|..+++||.+|+..++++++|+|+||+|||||++..++++.   +
T Consensus         2 ~~~~i~~~l~~~E~~~~p~~~y~~~~q~-~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~---~   77 (132)
T d1g3nc1           2 CEDRIFYNILEIEPRFLTSDSVFGTFQQ-SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE---H   77 (132)
T ss_dssp             HHHHHHHHHHHHGGGGCCCGGGHHHHTS-SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---H
T ss_pred             chHHHHHHHHHHHHHHCCChHHHHhcCc-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHH---H
Confidence            4678999999999999999999998876 59999999999999999999999999999999999999999999988   8


Q ss_pred             hHHHHHHHHHHHhhcccccCCChhhHHHhhcCCCccHHHHHHHHHHHHHHcCCccc
Q 027173          119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLR  174 (227)
Q Consensus       119 lql~~~~cl~IAsK~ee~~~~~~~~l~~~~~~~~~t~~~i~~~E~~IL~~L~~~l~  174 (227)
                      +|++|+||+|||+|+||..+|.++++.. .+++.|+.++|.+||+.||++|+|++.
T Consensus        78 lqLia~tcl~iAsK~ee~~~~~~~~l~~-~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          78 FQKTGSACLLVASKLRSLTPISTSSLCY-AAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCCHHHHHH-HTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHH-HHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999999999999985 788899999999999999999999974
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure