Citrus Sinensis ID: 027226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGEYCSRRSFRL
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccHHHHHHHHHHHHccccEEEEccccccHHHHcccccEEEEccccccHHHHHcccccEEEEEcccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccEEEcHHHHHHHccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHHHHHHHHHHHcccccEEEccccHHHHHHHHccccEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEEEcccEEEEEEccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccEEccHHHHHHHccEEcccccccccccc
Coil and Loop (DISEMBL)
megmarssdknitrvlfcgphfpashnytkeylqnypsiqvdvvpisdvpdVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGvglegvdinaatrcgikvaripgdvtgnaaSCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetllgKTVFILGFGNIGVELAKRLRPFGVKIiatkrswashsqvscqssgwhcKQVISIFnekgfssgeycsrrsfrl
Flexible Loop (DISEMBL)
megmarssdkniTRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetlLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFnekgfssgeycsrrsfrl
Low Complexity Region (SEG)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPsiqvdvvpisdvpdviANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGEYCSRRSFRL
Disordered region (IsUnstruct)
***********ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFS************
Disordered Region (DISOPRED)
**************VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGEYCSRR**R*
Disordered Region (DISEMBL)
*********KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK**************GWHCKQVISIFNEKGFSSGEYCSRRSFRL
Disordered Region (DISPRO)
*****RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGEYCS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGEYCSRRSFRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.557	0.239	0.366	6e-13
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.553	0.368	0.357	1e-12
A5GFY8	533	D-3-phosphoglycerate dehy	yes	no	0.517	0.219	0.367	2e-11
A5A6P1	533	D-3-phosphoglycerate dehy	yes	no	0.517	0.219	0.359	2e-11
O43175	533	D-3-phosphoglycerate dehy	yes	no	0.517	0.219	0.359	2e-11
Q60HD7	533	D-3-phosphoglycerate dehy	N/A	no	0.517	0.219	0.351	3e-11
P35136	525	D-3-phosphoglycerate dehy	yes	no	0.619	0.266	0.278	3e-11
Q5EAD2	533	D-3-phosphoglycerate dehy	yes	no	0.517	0.219	0.359	5e-11
O08651	533	D-3-phosphoglycerate dehy	yes	no	0.530	0.225	0.336	8e-11
Q61753	533	D-3-phosphoglycerate dehy	yes	no	0.530	0.225	0.344	8e-11

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 46  ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
           I +VP     Y   VV++  ++D+  I  A  +K+I + GVG++ +DINAAT+ GI V  
Sbjct: 36  IREVP----KYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVN 91

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFIL 159
            PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++
Sbjct: 92  APG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVI 145

Query: 160 GFGNIGVELAKRLRPFGVKIIA 181
           G G +G E+AKR +   + ++A
Sbjct: 146 GLGRVGFEVAKRCKALEMNVLA 167

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 12/137 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           LC++ T ++D+  +  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + A
Sbjct: 52  LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 171
           E T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKR
Sbjct: 108 EFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKR 167

Query: 172 LRPFGVKII--ATKRSW 186
           L  F VKI+    +R W
Sbjct: 168 LSSFDVKILYYDIERRW 184

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct: 108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 81/151 (53%), Gaps = 11/151 (7%)

Query: 37  PSIQVDVVPI-----SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 90
           P I+ D + I     +D  D +  +   +V++  ++  +  ++   +K++ + GVG++ +
Sbjct: 17  PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNI 76

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTG 148
           DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G
Sbjct: 77  DIDEATKHGVIVINAP---NGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVG 133

Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
             L GKT+ I+G G IG E+A+R R FG+ +
Sbjct: 134 SELYGKTLGIVGLGRIGSEIAQRARAFGMTV 164

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 11/128 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct: 108 ELTCGMIMCLARQIPQAAASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 165 QSFGMKTI 172

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 5/125 (4%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
           ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct: 108 ELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAF 167

Query: 176 GVKII 180
           G+K +
Sbjct: 168 GMKTV 172

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 5/125 (4%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 51  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
           ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct: 108 ELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSF 167

Query: 176 GVKII 180
           G+K +
Sbjct: 168 GMKTV 172

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
224136053	343	predicted protein [Populus trichocarpa]	0.867	0.571	0.775	1e-86
118488445	343	unknown [Populus trichocarpa]	0.867	0.571	0.775	1e-86
255561522	380	phosphoglycerate dehydrogenase, putative	0.862	0.513	0.753	5e-83
363807464	391	uncharacterized protein LOC100785085 [Gl	0.849	0.491	0.723	5e-79
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.827	0.561	0.737	5e-78
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	0.880	0.533	0.718	2e-77
296089431	343	unnamed protein product [Vitis vinifera]	0.924	0.609	0.687	6e-77
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.831	0.492	0.702	1e-76
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.840	0.563	0.715	2e-76
388510518	344	unknown [Medicago truncatula]	0.831	0.546	0.702	3e-76

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 176/196 (89%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSGW 199
           RSWA HS+ S QS+G+
Sbjct: 181 RSWALHSEGSLQSNGF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 176/196 (89%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSGW 199
           RSWA HS+ S QS+G+
Sbjct: 181 RSWALHSEGSLQSNGF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 147/195 (75%), Positives = 170/195 (87%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           MA  +   ITRVLFCGPHFPASH YTK+YLQ YP IQVD VP++DVP+VIANYH+CV KT
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
            R+DS+ ISRA QMKLIMQFGVGLEG++I+AA+RCGIKVARIPGD TGNAASCAE+ IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQN+M+++I+QKKLG P GETLLGKTVFILG+GNIG+ELAKRL+PFGVK+IATK
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 184 RSWASHSQVSCQSSG 198
           R W S+  V  Q  G
Sbjct: 218 RKWTSNLHVLHQQKG 232

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 139/192 (72%), Positives = 169/192 (88%)

Query: 6   RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMR 65
           + ++K ITRVLFCGP FPASH YT EYLQN+  I+VDV+P+ DVP  IANYH+C+VK MR
Sbjct: 56  KDAEKQITRVLFCGPRFPASHEYTIEYLQNHSHIKVDVLPLEDVPKDIANYHVCIVKNMR 115

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           LDS  ISRA QM+LIMQ+GVGLEGVDI+AAT+ GIKVARIPGDV+GN+ASCAE+ IYLML
Sbjct: 116 LDSEIISRAVQMQLIMQYGVGLEGVDIDAATKHGIKVARIPGDVSGNSASCAEMAIYLML 175

Query: 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           GLLRKQNE++++I+QKKLG P  ETLLGKT+FILGFGNIG++LAKRL+PFGVK+IA KRS
Sbjct: 176 GLLRKQNELQVSIQQKKLGEPITETLLGKTIFILGFGNIGMDLAKRLQPFGVKVIAIKRS 235

Query: 186 WASHSQVSCQSS 197
           WAS++Q + + S
Sbjct: 236 WASYAQHASKLS 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 163/187 (87%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHS 190
           RSWAS S
Sbjct: 181 RSWASQS 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/199 (71%), Positives = 171/199 (85%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           +E M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+
Sbjct: 28  IEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCI 87

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK+MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ 
Sbjct: 88  VKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMA 147

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+
Sbjct: 148 IYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRIL 207

Query: 181 ATKRSWASHSQVSCQSSGW 199
           ATKRSWAS S  S QS+G+
Sbjct: 208 ATKRSWASQSLNSSQSNGF 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 145/211 (68%), Positives = 174/211 (82%), Gaps = 2/211 (0%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSGWHC--KQVISIFNEKG 212
           RSWAS S  S QS+G+         + +EKG
Sbjct: 181 RSWASQSLNSSQSNGFPTPNDNADELVDEKG 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 162/188 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 184 RSWASHSQ 191
           RSWAS++Q
Sbjct: 225 RSWASYAQ 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/190 (71%), Positives = 160/190 (84%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ME     S K + RVLFCG  FP+SHNYT EYL NYP +QVD+VP  DVP VI+NYH+CV
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK M+ D + ISRA+QMKLI+QFGVGL+GVD++AAT+ GIKVARIP  VTGNA SCAE+ 
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM++A++ K LGVPTG+TLLGKTVFI+GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 181 ATKRSWASHS 190
           ATKRSW  +S
Sbjct: 181 ATKRSWTENS 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 162/188 (86%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 184 RSWASHSQ 191
           RSWAS++Q
Sbjct: 187 RSWASYAQ 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.823	0.498	0.623	3.4e-61
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.544	0.232	0.341	9.7e-14
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.592	0.408	0.326	3.4e-13
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.539	0.232	0.359	1.1e-12
UNIPROTKB|E1C7Y3	525	PHGDH "Uncharacterized protein	0.530	0.228	0.344	1.8e-12
UNIPROTKB|Q5SZU1	499	PHGDH "D-3-phosphoglycerate de	0.517	0.234	0.359	7.3e-12
UNIPROTKB|O43175	533	PHGDH "D-3-phosphoglycerate de	0.517	0.219	0.359	8.3e-12
UNIPROTKB|A5GFY8	533	PHGDH "D-3-phosphoglycerate de	0.517	0.219	0.367	8.3e-12
MGI|MGI:1355330	533	Phgdh "3-phosphoglycerate dehy	0.530	0.225	0.344	1.1e-11
RGD|61987	533	Phgdh "phosphoglycerate dehydr	0.530	0.225	0.336	1.1e-11

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 116/186 (62%), Positives = 147/186 (79%)

Query:     1 MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPXXXXXXXXXXXXXXXXANYHLCV 60
             +E +    D ++TRVLFCGPHFP S+N+T+EYLQ YP                 NYH+CV
Sbjct:    40 IERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHICV 99

Query:    61 VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
               TM++DSN ISRA+ +KLIMQ+GVGL+GVDI+AAT+ GIKVARIP + TGNAASC+E+ 
Sbjct:   100 AMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMA 159

Query:   121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             IYLMLGLL+KQNEM++++  + LG PTG+TLLGKTVFILG+GNIG+ELAKRL+PFG ++I
Sbjct:   160 IYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVI 219

Query:   181 ATKRSW 186
             ATKR W
Sbjct:   220 ATKRFW 225

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    55 NYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
             NY   +V++  ++ ++ I+  + +K+I + G G++ VD++AAT+ GI V   P   +GN 
Sbjct:    47 NYDGLIVRSATKVTADVINAGSSLKIIGRAGTGVDNVDVDAATKRGIIVMNTP---SGNT 103

Query:   114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKR 171
              S AELT  L++ L R   +  ++++  K       G  L GK + I+G G IG E+A R
Sbjct:   104 LSAAELTCALVMSLSRHIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATR 163

Query:   172 LRPFGVKII 180
             ++ FG+K I
Sbjct:   164 MQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 177 (67.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 47/144 (32%), Positives = 81/144 (56%)

Query:    63 TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTI 121
             T ++D   ++RA +Q++LI QFG G++ +D+ +A + GI V   PG +T + A  A   +
Sbjct:    57 TDKIDGRLMARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVA---M 113

Query:   122 YLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFG 176
              L+L + R+ +E    +E  K     PT   G  L GK + I+G G IG  +A+R R FG
Sbjct:   114 ALILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFG 173

Query:   177 VKI-IATKRSWASHSQVSCQSSGW 199
             ++I    ++  +S  + S +++ W
Sbjct:   174 MQIHYHNRKPVSSRIEESLEATYW 197

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 46/128 (35%), Positives = 73/128 (57%)

Query:    56 YHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAA 114
             Y   +V++  ++ +  I  A  +K+I + GVG++ +D+ AA++ GI V   P    GN  
Sbjct:    42 YDALIVRSETKVTARIIEAAENLKIIGRAGVGVDNIDLAAASKKGIIVVNSP---EGNTI 98

Query:   115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-LGVP-TGETLLGKTVFILGFGNIGVELAKRL 172
             + AE T  LM+ LLR   +   A+++ K L    TG  L GKTV I+G G IG  +AKR+
Sbjct:    99 AAAEHTFALMMALLRNIPQAHAALKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRV 158

Query:   173 RPFGVKII 180
             + F  ++I
Sbjct:   159 KAFETRVI 166

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 43/125 (34%), Positives = 74/125 (59%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ +  A +++++ + G G++ VD++AATR G+ V   P   TGN+ S A
Sbjct:    51 LIVRSATKVSADVLEAAGRLQVVGRAGTGVDNVDVDAATRKGVLVMNTP---TGNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  ++L L R+  +   ++++ K       G  L GKT+ +LG G IG E+A R++ F
Sbjct:   108 ELTCGMILCLARQIPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAF 167

Query:   176 GVKII 180
             G+K I
Sbjct:   168 GMKTI 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

UNIPROTKB|Q5SZU1 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    17 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 73

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:    74 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 130

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   131 QSFGMKTI 138

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 46/128 (35%), Positives = 74/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0007420 "brain development" evidence=TAS

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006564 "L-serine biosynthetic process" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A5GFY8 PHGDH "D-3-phosphoglycerate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 47/128 (36%), Positives = 73/128 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ S+ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
             ELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R+
Sbjct:   108 ELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRM 164

Query:   173 RPFGVKII 180
             + FG+K I
Sbjct:   165 QSFGMKTI 172

GO:0031175 "neuron projection development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 43/125 (34%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISO;TAS

GO:0006541 "glutamine metabolic process" evidence=IMP

GO:0006544 "glycine metabolic process" evidence=IMP

GO:0006563 "L-serine metabolic process" evidence=IMP

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IMP

GO:0021510 "spinal cord development" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0022402 "cell cycle process" evidence=IMP

GO:0031175 "neuron projection development" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/125 (33%), Positives = 72/125 (57%)

Query:    58 LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             L V    ++ ++ I+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S A
Sbjct:    51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPN---GNSLSAA 107

Query:   118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPF 175
             ELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ F
Sbjct:   108 ELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAF 167

Query:   176 GVKII 180
             G+K +
Sbjct:   168 GMKTV 172

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA;ISO

GO:0006544 "glycine metabolic process" evidence=IEA;ISO

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA;ISO

GO:0009070 "serine family amino acid biosynthetic process" evidence=TAS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0019530 "taurine metabolic process" evidence=IEA;ISO

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021782 "glial cell development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0022402 "cell cycle process" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_410478	SubName- Full=Putative uncharacterized protein; (344 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1441.1.1	annotation not avaliable (142 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	1e-123
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-61
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-29
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-25
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-25
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	5e-25
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	9e-25
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	6e-24
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-23
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-22
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	5e-22
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-21
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	9e-21
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-20
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	8e-20
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-18
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-18
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-18
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	1e-17
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	7e-17
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	3e-16
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	5e-16
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-16
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	7e-16
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	8e-16
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	1e-14
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	5e-14
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-13
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	3e-13
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	8e-13
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	1e-12
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	3e-12
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	1e-11
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-10
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	3e-10
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	4e-10
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	5e-10
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	8e-10
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	9e-10
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	7e-09
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-08
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-08
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-08
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	7e-07
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	4e-06
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	6e-06
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	7e-06
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	3e-05
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-05
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	8e-05
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-04
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	7e-04
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	0.002
PRK08306	296	PRK08306, PRK08306, dipicolinate synthase subunit	0.004

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  352 bits (905), Expect = e-123
 Identities = 131/195 (67%), Positives = 160/195 (82%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ++     SD   TRVLFCGP FPAS++YT+EYLQ YP IQVD V   DVPDVIANY +CV
Sbjct: 7   IDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICV 66

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
            K MRLD++ I+RA+QMKLIMQFGVGLEGVD++AAT+ GIKVARIP + TGNAASCAE+ 
Sbjct: 67  PKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMA 126

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQNEM+++++ ++LG P G+TL GKTVFILG+G IG+ELAKRLRPFGVK++
Sbjct: 127 IYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL 186

Query: 181 ATKRSWASHSQVSCQ 195
           AT+RSW S  +    
Sbjct: 187 ATRRSWTSEPEDGLL 201

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  193 bits (494), Expect = 3e-61
 Identities = 71/180 (39%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVP-DVIANYHLCVVKTMR-LDSNCI 71
           +VLF GP FP +    +  L   P ++V      D    ++A+  + V    + +D+  +
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 72  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 131
           + A +++LI Q GVGL+GVD+ AAT  GI VA IPG   GNA S AE  + LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 132 NEMRMAIEQKKLGVPTGE---TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
            E    +   + G P G     L GKTV I+G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  111 bits (280), Expect = 1e-29
 Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 3/111 (2%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           ++ A ++K+I ++GVG + +D+ AA + GI V   PG    N+ S AELTI LML L R+
Sbjct: 63  LAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLALARQ 119

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             +    +       P G  L GKT+ I+G G IG  +A+RL  FG+K++A
Sbjct: 120 IPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLA 170

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  100 bits (253), Expect = 1e-25
 Identities = 60/177 (33%), Positives = 92/177 (51%), Gaps = 20/177 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          E L+    I+VDV P      +  +IA+    +V++  ++ + 
Sbjct: 1   KVLVTDPIDEEGL----ELLREA-GIEVDVAPGLSEEELLAIIADADALIVRSATKVTAE 55

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVG++ +D+ AAT  GI V   PG    N  S AE TI LML L R
Sbjct: 56  VIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLALAR 112

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
              +   ++     ++KK     G  L GKT+ I+G G IG E+A+R R FG+K++A
Sbjct: 113 NIPQADASLRAGKWDRKKF---MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLA 166

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  101 bits (253), Expect = 1e-25
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 39  IQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC 98
                +   ++ + +A+    +V    +    ++ A  +K I + G G++ +D+ AAT+ 
Sbjct: 29  PDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKR 88

Query: 99  GIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGK 154
           GI V   PG   GNA S AEL + L+L L R+        R     +K     G  L GK
Sbjct: 89  GILVVNAPG---GNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF--RGTELAGK 143

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWA 187
           TV I+G G IG  +AKRL+ FG+K+I     + R  A
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERA 180

Length = 324

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score = 99.6 bits (249), Expect = 5e-25
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%)

Query: 39  IQVDVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATR 97
            + D+ P +++ + + +   +      R+D+  + +   +KLI     G + VD+ AA  
Sbjct: 28  YEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKE 87

Query: 98  CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEMRMA----IEQKKLGVPTGETL 151
            GI V  +PG  T    + AE  + L+L L R+  + + R+               G  L
Sbjct: 88  RGITVTNVPGYST---EAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            GKT+ I+G G IG  +A+RL+ FG+K++   RS
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRS 178

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 98.9 bits (247), Expect = 9e-25
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 8/119 (6%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++A ++K I   G G++ +D++AA + GI V  +PG    NA + AE  + L+L LLR+
Sbjct: 58  LAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLRR 114

Query: 131 ----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
                  +R        G P G  L GKTV I+G G IG  +AKRL+ FG+K++   R+
Sbjct: 115 LPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT 172

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 96.5 bits (241), Expect = 6e-24
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 16/161 (9%)

Query: 31  EYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG 86
           E L+     +VD  P+     + + I +Y + +V++  ++    I  A  +K+I + GVG
Sbjct: 15  EKLEE-AGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVG 73

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAI-EQK 141
           L+ +D+  A + GIKV   PG    ++ S AEL I LML L R       EM++    +K
Sbjct: 74  LDNIDVEYAKKKGIKVINTPG---ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK 130

Query: 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           K     G  L GKT+ I+GFG IG E+AK  R  G+ +IA 
Sbjct: 131 KY---KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAY 168

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 17/174 (9%)

Query: 15  VLFCGPHFPASHNYTKEYLQNYPSIQV-DVVPISDVPDVIANYH-LCVVKTMRLDSNCIS 72
           VL   P          E L+    ++V D +   ++ +   +   L V  T  + +  + 
Sbjct: 1   VLITDP----LRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLE 56

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
            A  +K+I + GVG++ +D++AAT  GI V  +PG    +  S AELT+ L+L L R+  
Sbjct: 57  AAPGLKVIARRGVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILALARRIP 113

Query: 133 EMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           E   A    + G      P G  L GKT+ ++G G IG   A   +  G+ ++A
Sbjct: 114 E---ADASVRAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVA 164

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 94.4 bits (236), Expect = 2e-22
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 23/164 (14%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVG 86
           E L++ P ++VDV    D     ++I +Y   +V++  ++ +  +  A  +K+I + GVG
Sbjct: 15  EILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMA 137
           ++ VD+ AATR GI V   P   TGN  S AE TI LML L R         K  +    
Sbjct: 75  VDNVDVPAATRRGIIVVNAP---TGNTISAAEHTIALMLALARNIPQAHASLKAGKW--- 128

Query: 138 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            E+KK     G  L GKT+ I+G G IG E+AKR + FG+K+IA
Sbjct: 129 -ERKKF---MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA 168

Length = 526

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 91.5 bits (228), Expect = 5e-22
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 14/135 (10%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    +  +D   I  A  +K+I  +G G + +D++ A   GI V   P   T      A
Sbjct: 47  LITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVST---EPTA 103

Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELA 169
           ELT  L+L L R+       MR       LG       G  L GKT+ I+G G IG  +A
Sbjct: 104 ELTFGLILALARRIAEGDRLMR---RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVA 160

Query: 170 KRLRPFGVKIIATKR 184
           +R + FG+KI+   R
Sbjct: 161 RRAKAFGMKILYYNR 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 28/181 (15%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-------ISDVPDVIANYHLCVVKTM-R 65
           +VL   P          + L++   ++VDV         +  +PD    Y   +V++  +
Sbjct: 1   KVLIADP----ISPDGIDILED-VGVEVDVQTGLSREELLEIIPD----YDALIVRSATK 51

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +    I+ A ++K+I + GVG++ +DI AAT  GI V   P   TGN  S AE  + ++L
Sbjct: 52  VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP---TGNTISAAEHALAMLL 108

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              R   +   ++     ++K      G  L GKT+ ++G G IG  +AKR + FG+K++
Sbjct: 109 AAARNIPQADASLKEGEWDRKAF---MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165

Query: 181 A 181
           A
Sbjct: 166 A 166

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 87.8 bits (219), Expect = 9e-21
 Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    T ++D+  +  A  +K+I  + VG + +D++AA   GI V   P  +T    + A
Sbjct: 47  LLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLT---DATA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGV-PT---GETLLGKTVFILGFGNIGVELAKRL 172
           +L   L+L   R+  E  R     +  G  PT   G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRS 185
           + FG+KI+   RS
Sbjct: 164 KGFGMKILYHNRS 176

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 87.2 bits (217), Expect = 2e-20
 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 15/140 (10%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGV---GLEGVDINAATRCGIKVARIPG 107
           + + +  + +     +    I  A ++KLI   GV   G E VD+ AAT  GI V   PG
Sbjct: 42  EALKDADILITHFAPVTKKVIEAAPKLKLI---GVCRGGPENVDVEAATERGIPVLNTPG 98

Query: 108 DVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKL--GVPTGETLLGKTVFILGF 161
               NA + AE T+ LML   R        ++    +K        G  L GKTV I+GF
Sbjct: 99  R---NAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGF 155

Query: 162 GNIGVELAKRLRPFGVKIIA 181
           G IG  +AKRL+ FG +++ 
Sbjct: 156 GAIGRRVAKRLKAFGAEVLV 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 85.5 bits (212), Expect = 8e-20
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 6/109 (5%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           KLI + G+G + VD+ AAT  G+ V R+PG V     + AE  + L+L +LRK N+   A
Sbjct: 71  KLIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRKINQASEA 128

Query: 138 IEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIAT 182
           +++ K        G  L GKTV I+G+GNIG  +A+ L+  F  K++A 
Sbjct: 129 VKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY 177

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 36  YPSIQVDVVPISD--VPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
              +  +V  + D    + + +  + V   +  +   ++   ++KLI     G++ + + 
Sbjct: 19  LEGLYAEVPELPDEAAEEALEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPL- 76

Query: 94  AATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLLRK----QNEMRMAI-EQKKL 143
                     R+P  V      GN+ + AE  + L+L L ++     N++R  I   +  
Sbjct: 77  ---------ERLPEGVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAG 127

Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             P  + L GKTV ILG+G+IG E+A+ L+ FG+++I   RS
Sbjct: 128 EEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRS 169

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 39  IQVDVVPIS---DVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            +VD  P     ++  +I  Y   ++++   +D   I +A  +K I + G GLE +D+  
Sbjct: 21  FEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEY 80

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN----EMRMAI---EQKKLGVPT 147
           A   GI++   P    GN  +  E  + ++L L  K N    E+R  I   E  +     
Sbjct: 81  AKEKGIELFNAP---EGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREGNR----- 132

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  L+GKTV I+G+GN+G   AKRL  FG K+IA
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIA 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
             L +  I+    ++LI  FGVG +G+D++AA   GI+V   PG         A+L + L
Sbjct: 52  TGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGV---LTDDVADLAVGL 108

Query: 124 MLGLLRK--QNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           +L +LR+    + R     +  K   P    + GK V I+G G IG  +A+RL  FG++I
Sbjct: 109 LLAVLRRIPAAD-RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 79.5 bits (197), Expect = 1e-17
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 13/115 (11%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K+I   G G + +D++A T+ GI+V+  PG V     + A+  ++L+LG LR  +    +
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVD---EATADTALFLILGALRNFSRAERS 134

Query: 138 IEQKKLGVPTGETLL-------GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
               + G   G   L       GKT+ ILG G IG  +A++   FG+KII   RS
Sbjct: 135 A---RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRS 186

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score = 77.2 bits (191), Expect = 7e-17
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 20/138 (14%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG--- 107
           D +   +        + +  I    ++K+I+++GVG++ VD+ AAT  GI V  +P    
Sbjct: 46  DALLVQYA------PVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCT 99

Query: 108 -DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL---GKTVFILGFGN 163
            +V       A+  + L+L L RK   +  A+         G  +    G T+ ++GFG 
Sbjct: 100 EEV-------ADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGR 152

Query: 164 IGVELAKRLRPFGVKIIA 181
           IG  +AKR + FG ++IA
Sbjct: 153 IGRAVAKRAKAFGFRVIA 170

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 20/138 (14%)

Query: 60  VVKTMR----LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS 115
            +  MR      +  + R   +KL++  G+    +D+ AA   GI V    G  T    +
Sbjct: 49  AIVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGPT----A 104

Query: 116 CAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            AELT  L+L L R        +R    Q  LG      L GKT+ I+G G IG  +A+ 
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTTLGT----GLAGKTLGIVGLGRIGARVARI 160

Query: 172 LRPFGVKIIATKRSWASH 189
            + FG+++IA    W+S+
Sbjct: 161 GQAFGMRVIA----WSSN 174

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 74.9 bits (185), Expect = 5e-16
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 16/120 (13%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--- 130
           A  +K I + G G+  +D++AA++ GI V   PG    NA + AEL I +ML L R    
Sbjct: 48  APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSRNIIQ 104

Query: 131 ---------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                     +++   +E+ K      E L GKT+ ++G GNIG  +A      G+K+I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTE-LRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 74.8 bits (184), Expect = 6e-16
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 154
             PG +T  A   A+    L+L   R+  E    +   E K+ GV        G  + GK
Sbjct: 95  NTPGVLT-EAT--ADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGK 151

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           T+ I+GFG IG  +A+R + FG++I+   R+
Sbjct: 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182

Length = 333

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 74.5 bits (184), Expect = 7e-16
 Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 8/167 (4%)

Query: 21  HFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLI 80
             P    + +      P  ++ VV   ++ + +A+    V+         +  A +++ I
Sbjct: 6   LSPLDDEHLERLRAAAPGAELRVVTAEELTEELADAD--VLLGNPPLPELLPAAPRLRWI 63

Query: 81  MQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLRKQNEMRMAIE 139
                G++ +         + +        G      AE  +  ML   RK         
Sbjct: 64  QSTSAGVDALLFPELLERDVVLTN----ARGIFGPPIAEYVLGYMLAFARKLPRYARNQA 119

Query: 140 QKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           +++         L GKTV I+G G+IG E+A+R + FG+++I  +RS
Sbjct: 120 ERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRS 166

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL-------CVVKTMR 65
            +VL    +        KE L+      VDV  ++ + +      L           T +
Sbjct: 1   MKVLIYD-YRDDELEIEKEILKAGG---VDVEIVTYLLNDDETAELAKGADAILTAFTDK 56

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D+  + +A  +K I     G + +D++ A   GI V  +P        + AE TI L+L
Sbjct: 57  IDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPN---AVAEHTIALIL 113

Query: 126 GLLRKQ--NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
            LLR +   + R   +  +     G  L  +TV ++G G IG  +A+R + FG+K+IA 
Sbjct: 114 ALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 7/127 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L      R+D++ +    ++K+I     G +  D+ A T  GI V  +P  +T      A
Sbjct: 48  LMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLT---EPTA 104

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT--GETLLGKTVFILGFGNIGVELAKRLR 173
           ELTI L++GL R        +   K G   P   G  L GKTV ILG G +G  +A+RL 
Sbjct: 105 ELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLS 164

Query: 174 PFGVKII 180
            FG  ++
Sbjct: 165 GFGATLL 171

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 24/141 (17%)

Query: 52  VIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
           +IAN        M L    I     +K+I     G++ VD+ A    GI V+        
Sbjct: 53  MIAN--------MPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVS-------- 96

Query: 112 NAA-----SCAELTIYLMLGLLRK--QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNI 164
           NAA     + AELTI L + LLR     +  +     K G+  G  L GKTV I+G G I
Sbjct: 97  NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGL-IGRELAGKTVGIVGTGAI 155

Query: 165 GVELAKRLRPFGVKIIATKRS 185
           G+ +A+  + FG K++A  RS
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS 176

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 65.6 bits (161), Expect = 2e-13
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 121 IYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           + L+L L R+  E    +   +       G  L GKTV I+G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 179 IIATKRS 185
           +IA  R 
Sbjct: 61  VIAYDRY 67

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 25/127 (19%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA   GI VA    +VTG N  S AE  + ++L L+R
Sbjct: 79  IAKAKNLKLALTAGIGSDHVDLQAANDRGITVA----EVTGSNVVSVAEHVVMMILILVR 134

Query: 130 K-QNEMRMAIEQKKLGVPTGE-----------TLLGKTVFILGFGNIGVELAKRLRPFGV 177
                   AIE        G             L GKTV  +G G IG+ + +RL+PF V
Sbjct: 135 NYVPGHEQAIE--------GGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186

Query: 178 KIIATKR 184
            ++   R
Sbjct: 187 HLLYYDR 193

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
           A + AE  + L+L  LR+      A              L G TV I+G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 172 LRPFGVKIIATKRS 185
           L PFG K+IA  RS
Sbjct: 144 LAPFGAKVIAVNRS 157

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            LD+  +++   +KLI     G   VD+ AA   GI V  +PG  T    S A+ T  L+
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYST---DSVAQHTFALL 110

Query: 125 LGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           L L R        ++  +            P  E L GKT+ I+G+GNIG  +A+  R F
Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAF 169

Query: 176 GVKIIATKRS 185
           G+K++  +R 
Sbjct: 170 GMKVLFAERK 179

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA+  GI VA    +VTG N+ S AE  + ++L L+R
Sbjct: 109 IAKAPNLKLAITAGIGSDHVDLQAASEHGITVA----EVTGSNSISVAEHVVMMILALVR 164

Query: 130 KQNEMRMAIEQKKLG-------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
                  +  Q   G       V     L G TV I+G G IG+ + +RL+PF VK+  T
Sbjct: 165 NYEP---SHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 183 KR 184
            R
Sbjct: 222 DR 223

Length = 385

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V    RLD+  + +  ++KLI     G + +D+ A    GI V  +P    G A + A
Sbjct: 45  ISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPD--YGEA-TVA 101

Query: 118 ELTIYLMLGLLRKQNEM-----RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           E    L+L L RK  E      R    Q  L    G  L GKT+ ++G G IG  +A+  
Sbjct: 102 EHAFALLLALSRKLREAIERTRRGDFSQAGL---RGFELAGKTLGVVGTGRIGRRVARIA 158

Query: 173 RPFGVKIIA 181
           R FG+K++A
Sbjct: 159 RGFGMKVLA 167

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 6/99 (6%)

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
           +G + +D++AA   GIKV     +VT +  S A+ T+ LML  LRK  ++  R  +    
Sbjct: 77  IGYDHIDLDAAKELGIKV----SNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYS 132

Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           LG   G  L   TV ++G G IG  + K L  FG KI+A
Sbjct: 133 LGGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILA 171

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 102 VARIPGDVT-GNA-----ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKT 155
           +  +P  VT  NA     AS AEL + L+L  LR       A  + +       +L  + 
Sbjct: 75  LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRR 134

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           V I+G+G+IG  + +RL PF V++    R+
Sbjct: 135 VLIVGYGSIGRAIERRLAPFEVRVTRVART 164

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 23/129 (17%)

Query: 65  RLDSNCISR--ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS---CAEL 119
            LD+  + +     +KLI     G   VD+ AA   GI V R+P      A S    AE 
Sbjct: 55  DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVP------AYSPYAVAEH 108

Query: 120 TIYLMLGLLRK----QNEMRM---AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
            + L+L L RK     N +R    +++    G+  G  L GKTV ++G G IG   A+ L
Sbjct: 109 AVALLLALNRKIHRAYNRVREGNFSLD----GL-LGFDLHGKTVGVIGTGKIGQAFARIL 163

Query: 173 RPFGVKIIA 181
           + FG +++A
Sbjct: 164 KGFGCRVLA 172

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 20/144 (13%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           +      I+N      K   LD+  ++ A Q+KLI+    G   VD+ AA   GI V   
Sbjct: 43  LRGAQVAISN------KVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNC 95

Query: 106 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTV 156
            G  T    S A+ T+ L+L L  +  + + A+   +         L  P  E L GKT+
Sbjct: 96  QGYGT---PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVE-LEGKTL 151

Query: 157 FILGFGNIGVELAKRLRPFGVKII 180
            +LG G +G  +A+    FG++++
Sbjct: 152 GLLGHGELGGAVARLAEAFGMRVL 175

Length = 317

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ-KKLGVPT---GE 149
           A    GI V     D   NA   AE T+  +L  LR+      A    +  G PT   G 
Sbjct: 90  AVWERGILVTS-AADA--NAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR 146

Query: 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            L G+TV I+GFG IG  + + LRPFG++++ 
Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLV 178

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++   +K I  +  G++ + +    + GI +    G    ++   AE  +  +L + + 
Sbjct: 55  LAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSG---IHSIPIAEWIVGYILEIYKG 111

Query: 131 QNEMRMAIEQKK----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              ++ A + +K        +   L GKT+  LG G+IG E+AKRL+ FG+K+I
Sbjct: 112 ---LKKAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI 162

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 25/127 (19%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I +A  ++L++  G+G + +D+ AA   G+ VA    +VTG N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVA----EVTGSNVVSVAEDELMRILILLR 171

Query: 130 K-QNEMRMAIEQKKLGVPTGE-----------TLLGKTVFILGFGNIGVELAKRLRPFGV 177
                    +         GE            L GKTV  +G G IG  L +RL+PF  
Sbjct: 172 NFLPGYHQVVS--------GEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 178 KIIATKR 184
            ++   R
Sbjct: 224 NLLYHDR 230

Length = 386

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)

Query: 15  VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVV--KTMRLDS 68
           +L    H P++    +        I+V+ +  +    ++ + + + HL  +  KT +L  
Sbjct: 4   LLLENIH-PSADELFRAG-----GIEVERLKGALDEDELIEALKDVHLLGIRSKT-QLTE 56

Query: 69  NCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLL 128
             +  A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  ++ L 
Sbjct: 57  EVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGEIIMLA 113

Query: 129 R----KQNEMRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           R    +       I  K     TG  E + GKT+ I+G+G+IG +L+      G+++I
Sbjct: 114 RRLPDRNAAAHRGIWNK---SATGSHE-VRGKTLGIIGYGHIGSQLSVLAEALGMRVI 167

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE 133
              +K I     G++ +D++ A   G+K+  +P     +  + AE  +   L LLR   E
Sbjct: 66  EYGIKQIALRSAGVDMIDLDLAKENGLKITNVP---AYSPRAIAEFAVTQALNLLRNTPE 122

Query: 134 MRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKIIA 181
           +   + +       G  L+G+     TV I+G G IG   AK  + FG K+IA
Sbjct: 123 IDRRVAKGDFRWAPG--LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIA 173

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 78  KLIMQFGVGLEGVDIN-AATRCGIKVARIPGDVTG----NAASCAELTIYLMLGLLRKQN 132
           +L+  + +G +  D+  A  R G+    + G        N+    EL++  +   L  Q 
Sbjct: 89  RLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQ 148

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             R+       G P    + GKTV ++G G +G E A+ LR  G +++ T  +  +  Q+
Sbjct: 149 PGRLG------GAPD---VAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 18/136 (13%)

Query: 57  HLCVVKTMRLDSNCISRANQMKLIMQFG--------VGLEGVDINAATRCGIKVARIPGD 108
           H  V+    +  NC +    +++  ++G        VG   +D+ AA   G K+AR+P  
Sbjct: 45  HDAVI----VRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPS- 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIG 165
            + NA   AEL   L + L R           K   V      + +   TV I+G G IG
Sbjct: 100 YSPNAI--AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIG 157

Query: 166 VELAKRLRPFGVKIIA 181
           +  AK  +  G K+I 
Sbjct: 158 LTAAKLFKGLGAKVIG 173

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 19/95 (20%)

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D +     GI  A  PG    NA S AE   Y++  LL       +A  Q     
Sbjct: 67  GTDHIDTDYLKERGIGFANAPG---CNANSVAE---YVLSALLV------LAQRQ----- 109

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             G +L GKTV I+G GN+G  LA+RL   G+ ++
Sbjct: 110 --GFSLKGKTVGIVGVGNVGSRLARRLEALGMNVL 142

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            A + AE  +  +L   ++  E+ +   ++    P G +L G T+ I+GFG IG  LA+R
Sbjct: 95  AAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLG-SLAGSTLGIVGFGAIGQALARR 153

Query: 172 LRPFGVKIIATKRS 185
               G++++A +RS
Sbjct: 154 ALALGMRVLALRRS 167

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 83  FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE----MRMAI 138
             VG   VD+ AA + GI V   PG +T    + AEL   L L   R+  E    MR  +
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGL 149

Query: 139 EQKKLGVPT---GETLLGKTVFILGFGNIGVELAK 170
            +  L  P    G  L G+TV ++G G IG   A+
Sbjct: 150 YEGWL--PHLFVGNLLKGQTVGVIGAGRIGSAYAR 182

Length = 386

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 11/80 (13%)

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKK----LG-----VPTGE--TLLGKTVFILGFGNIG 165
           AE T+ L+L  +R+ +EMR A  + +    LG      P G   TLLG  V I GFG+IG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 166 VELAKRLRPFGVKIIATKRS 185
             LA  L   G ++    RS
Sbjct: 156 QRLAPLLTALGARVTGVARS 175

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D   +S+   +KLI     G   VDI  A + GI V  + G  T    S A+ T  ++L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST---ESVAQHTFAMLL 109

Query: 126 GLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            LL + N     ++  +         +  P GE + GK   I+G G IG  +AK  + FG
Sbjct: 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGE-IKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 177 VKII 180
            K++
Sbjct: 169 AKVV 172

Length = 311

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 100 IKVARIPGDVT--GNAA----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           I V+ IP +V    NA     S AE    L+L   +   E    ++         + L  
Sbjct: 63  IDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYN 122

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           K++ ILG+G IG  +A   + FG+ I A  RS
Sbjct: 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154

Length = 303

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 66  LDSNCISRANQM--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           L        N++  K I Q   G +  D+  AT+  + ++ +P   + +  S AE T+  
Sbjct: 57  LSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVP---SYSPESIAEFTVTQ 113

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRL-RPFGV 177
            + L+R  N+++  +  ++        +L +      V ++G G IG+ +AK   + +G 
Sbjct: 114 AINLVRHFNQIQTKV--REHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171

Query: 178 KIIA 181
            ++A
Sbjct: 172 DVVA 175

Length = 332

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 27/180 (15%)

Query: 20  PHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKL 79
           P FP  H +  EY        ++    +D+  VI +      K +      +++  ++KL
Sbjct: 21  PSFP--HEWI-EYDHTSAEQTIERAKDADI--VITS------KVL-FTRETLAQLPKLKL 68

Query: 80  IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL-------LRKQN 132
           I     G   VD+ AA   GI V  + G  +    +  E  + ++  L        R Q 
Sbjct: 69  IAITATGTNNVDLVAAKELGIAVKNVTGYSS---TTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 133 EMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
             R A   K+      P  + + G T+ + G G +G E+ +  +  G+K++  +   AS 
Sbjct: 126 SDRWA-TCKQFCYFDYPITD-VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV 183

Length = 314

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 117 AELTI--YLML--GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           AE  I  +L+L    L+     +     ++    + E  +GK V ILG+G+IG + A+  
Sbjct: 93  AEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLA 152

Query: 173 RPFGVKIIATKRS 185
           +  G+++ A  RS
Sbjct: 153 QALGMEVYAYTRS 165

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           MAIE       T  T+ G  V +LGFG  G+ LA+ L+  G  +
Sbjct: 141 MAIEH------TPITIHGSNVLVLGFGRTGMTLARTLKALGANV 178

Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	99.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.88
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.73
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.7
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.69
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.47
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.13
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.8
PLN02494	477	adenosylhomocysteinase	98.77
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.61
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.49
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.32
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.13
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.12
PRK05225	487	ketol-acid reductoisomerase; Validated	98.08
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.99
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.97
PLN02712	667	arogenate dehydrogenase	97.94
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.86
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.81
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.77
PLN02256	304	arogenate dehydrogenase	97.76
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.75
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.73
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.67
PRK08818	370	prephenate dehydrogenase; Provisional	97.63
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.62
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	97.61
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.56
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.56
PRK06545	359	prephenate dehydrogenase; Validated	97.51
PLN02712	667	arogenate dehydrogenase	97.51
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.48
PRK07417	279	arogenate dehydrogenase; Reviewed	97.47
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.46
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.45
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.41
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.39
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.36
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.34
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.33
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.32
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.32
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.3
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.29
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.26
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.23
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.17
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.16
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.15
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.15
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.14
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.11
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.1
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.09
PLN02858	1378	fructose-bisphosphate aldolase	97.09
PLN02688	266	pyrroline-5-carboxylate reductase	97.08
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.07
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.06
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.02
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.01
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.0
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.0
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.97
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.96
PRK08507	275	prephenate dehydrogenase; Validated	96.96
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.96
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.95
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.94
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.94
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.93
PRK14031	444	glutamate dehydrogenase; Provisional	96.9
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.9
PRK08655	437	prephenate dehydrogenase; Provisional	96.89
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.89
PRK09414	445	glutamate dehydrogenase; Provisional	96.87
PLN02477	410	glutamate dehydrogenase	96.86
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.86
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.83
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.83
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.81
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.8
PRK14982	340	acyl-ACP reductase; Provisional	96.76
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.76
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.76
PLN02858	1378	fructose-bisphosphate aldolase	96.73
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.72
PLN00203	519	glutamyl-tRNA reductase	96.71
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.7
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.69
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.69
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.67
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.67
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.66
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.65
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.62
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.61
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.61
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.59
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.59
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.57
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.56
PRK14030	445	glutamate dehydrogenase; Provisional	96.55
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.52
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.52
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.5
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.5
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.49
PRK07680	273	late competence protein ComER; Validated	96.48
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.47
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.42
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.42
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.41
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.41
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	96.39
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.39
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.36
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.32
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.32
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.3
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.26
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.25
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.25
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	96.24
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.2
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.15
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.14
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.11
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.1
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.05
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.05
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.01
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.97
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	95.92
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.9
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	95.89
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	95.89
PRK08328	231	hypothetical protein; Provisional	95.88
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.88
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	95.87
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.86
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.84
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.83
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.81
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	95.78
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.76
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.74
PRK06141	314	ornithine cyclodeaminase; Validated	95.74
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.74
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	95.7
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.67
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.66
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.65
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.59
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.58
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	95.57
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.56
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.54
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.53
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.53
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.52
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.52
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.52
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.49
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.47
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	95.45
PRK09496	453	trkA potassium transporter peripheral membrane com	95.42
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.41
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	95.41
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.4
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.4
PRK07340	304	ornithine cyclodeaminase; Validated	95.36
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.33
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.3
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.3
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.25
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.23
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.2
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.18
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	95.18
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.16
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	95.1
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.08
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.07
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.05
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.02
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	95.01
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.97
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.97
PRK08223	287	hypothetical protein; Validated	94.97
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.96
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
PTZ00117	319	malate dehydrogenase; Provisional	94.95
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.94
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.91
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.9
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.87
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.87
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.85
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.84
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.82
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.81
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.79
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.76
PRK08618	325	ornithine cyclodeaminase; Validated	94.75
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.74
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.72
PRK07411	390	hypothetical protein; Validated	94.71
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.71
PRK06392	326	homoserine dehydrogenase; Provisional	94.71
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	94.69
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.66
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.66
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.6
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.59
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.59
PRK06197	306	short chain dehydrogenase; Provisional	94.57
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.55
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.5
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
PRK04148	134	hypothetical protein; Provisional	94.41
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.36
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.33
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	94.3
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.28
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.27
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.21
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.21
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.19
PRK08291	330	ectoine utilization protein EutC; Validated	94.17
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.14
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.13
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.13
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.08
PRK06841	255	short chain dehydrogenase; Provisional	94.06
PRK12828	239	short chain dehydrogenase; Provisional	94.02
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.01
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.99
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.97
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.96
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	93.85
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.8
PLN00106	323	malate dehydrogenase	93.79
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.77
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.75
PRK08703	239	short chain dehydrogenase; Provisional	93.73
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.72
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	93.7
PRK06523	260	short chain dehydrogenase; Provisional	93.68
PRK06057	255	short chain dehydrogenase; Provisional	93.67
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.58
PRK06407	301	ornithine cyclodeaminase; Provisional	93.54
PRK06823	315	ornithine cyclodeaminase; Validated	93.53
PRK06949	258	short chain dehydrogenase; Provisional	93.53
PRK14852	989	hypothetical protein; Provisional	93.52
PRK06153	393	hypothetical protein; Provisional	93.48
CHL00194	317	ycf39 Ycf39; Provisional	93.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.48
PRK06046	326	alanine dehydrogenase; Validated	93.47
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	93.47
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	93.46
PRK06398	258	aldose dehydrogenase; Validated	93.45
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.42
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.4
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.37
PRK09496	453	trkA potassium transporter peripheral membrane com	93.34
PTZ00245	287	ubiquitin activating enzyme; Provisional	93.34
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.33
PRK08862	227	short chain dehydrogenase; Provisional	93.31
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.3
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	93.3
PRK01713	334	ornithine carbamoyltransferase; Provisional	93.28
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.28
PRK02102	331	ornithine carbamoyltransferase; Validated	93.27
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.23
PRK07576	264	short chain dehydrogenase; Provisional	93.21
PRK08265	261	short chain dehydrogenase; Provisional	93.17
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	93.16
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.15
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	93.15
PRK09186	256	flagellin modification protein A; Provisional	93.14
PRK05717	255	oxidoreductase; Validated	93.11
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	93.11
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.06
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	93.01
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.01
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	93.0
PRK08339	263	short chain dehydrogenase; Provisional	93.0
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	92.92
PRK07806	248	short chain dehydrogenase; Provisional	92.89
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.88
PRK08264	238	short chain dehydrogenase; Validated	92.85
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.83
PRK08628	258	short chain dehydrogenase; Provisional	92.82
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.79
PRK07060	245	short chain dehydrogenase; Provisional	92.75
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	92.75
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.75
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.74
PRK07831	262	short chain dehydrogenase; Provisional	92.73
PRK06172	253	short chain dehydrogenase; Provisional	92.73
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.72
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.69
PRK00779	304	ornithine carbamoyltransferase; Provisional	92.68
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	92.65
PRK14804	311	ornithine carbamoyltransferase; Provisional	92.64
PRK06125	259	short chain dehydrogenase; Provisional	92.64
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	92.63
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.62
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.61
PRK07062	265	short chain dehydrogenase; Provisional	92.55
PRK05867	253	short chain dehydrogenase; Provisional	92.54
PRK08177	225	short chain dehydrogenase; Provisional	92.52
PRK08374	336	homoserine dehydrogenase; Provisional	92.52
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.5
COG5322	351	Predicted dehydrogenase [General function predicti	92.49
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	92.48
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.47
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.47
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	92.46
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.44
PRK07890	258	short chain dehydrogenase; Provisional	92.43
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.42
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	92.41
PRK09072	263	short chain dehydrogenase; Provisional	92.38
PRK07774	250	short chain dehydrogenase; Provisional	92.37
PRK07326	237	short chain dehydrogenase; Provisional	92.37
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.36
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	92.36
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.34
PRK12861	764	malic enzyme; Reviewed	92.31
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	92.3
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.28
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	92.28
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.26
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	92.25
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	92.25
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	92.23
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.18
PRK06500	249	short chain dehydrogenase; Provisional	92.18
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	92.17
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.16
PLN02602	350	lactate dehydrogenase	92.14
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.14
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	92.13
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.11
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	92.09
PRK08589	272	short chain dehydrogenase; Validated	92.07
PRK04284	332	ornithine carbamoyltransferase; Provisional	92.07
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.07
PRK05866	293	short chain dehydrogenase; Provisional	92.05
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.04
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	92.04
PRK05876	275	short chain dehydrogenase; Provisional	92.04
PRK12939	250	short chain dehydrogenase; Provisional	92.01
PRK08085	254	gluconate 5-dehydrogenase; Provisional	92.01
PRK12367	245	short chain dehydrogenase; Provisional	91.99
PLN02740	381	Alcohol dehydrogenase-like	91.98
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	91.97
PTZ00325	321	malate dehydrogenase; Provisional	91.94
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.92
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	91.92
PRK07589	346	ornithine cyclodeaminase; Validated	91.91
PRK08213	259	gluconate 5-dehydrogenase; Provisional	91.9
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	91.89
PRK06196	315	oxidoreductase; Provisional	91.87
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.85
PRK05875	276	short chain dehydrogenase; Provisional	91.85
PRK12862	763	malic enzyme; Reviewed	91.84
PRK06138	252	short chain dehydrogenase; Provisional	91.83
PLN02427	386	UDP-apiose/xylose synthase	91.82
PRK07825	273	short chain dehydrogenase; Provisional	91.82
PLN02780	320	ketoreductase/ oxidoreductase	91.82
PRK06114	254	short chain dehydrogenase; Provisional	91.81
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.78
PRK08017	256	oxidoreductase; Provisional	91.78
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.77
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.76
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.74
PRK11891	429	aspartate carbamoyltransferase; Provisional	91.71
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	91.69
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	91.68
PRK11579	346	putative oxidoreductase; Provisional	91.67
PRK07478	254	short chain dehydrogenase; Provisional	91.66
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	91.64
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.63
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.63
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.61
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	91.61
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.6
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.59
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.57
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	91.57
PRK12742	237	oxidoreductase; Provisional	91.55
PRK07856	252	short chain dehydrogenase; Provisional	91.54
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	91.54
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.54
PRK05872	296	short chain dehydrogenase; Provisional	91.51
PLN02896	353	cinnamyl-alcohol dehydrogenase	91.48
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.46
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	91.44
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.39
PRK07067	257	sorbitol dehydrogenase; Provisional	91.37
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.36
PRK08278	273	short chain dehydrogenase; Provisional	91.35
TIGR00036	266	dapB dihydrodipicolinate reductase.	91.32
PRK02255	338	putrescine carbamoyltransferase; Provisional	91.32
PRK05086	312	malate dehydrogenase; Provisional	91.32
PRK05993	277	short chain dehydrogenase; Provisional	91.31
PRK07063	260	short chain dehydrogenase; Provisional	91.29
PRK08226	263	short chain dehydrogenase; Provisional	91.29
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	91.27
PRK09242	257	tropinone reductase; Provisional	91.27
PRK06223	307	malate dehydrogenase; Reviewed	91.26
PRK07035	252	short chain dehydrogenase; Provisional	91.26
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.25
PLN02240	352	UDP-glucose 4-epimerase	91.24
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	91.22
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	91.21
PRK07577	234	short chain dehydrogenase; Provisional	91.2
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.19
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.16
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	91.16
PRK06198	260	short chain dehydrogenase; Provisional	91.12
PRK06139	330	short chain dehydrogenase; Provisional	91.04
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	91.03
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	91.0
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.0
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	90.98
PRK08303	305	short chain dehydrogenase; Provisional	90.92
PRK07814	263	short chain dehydrogenase; Provisional	90.91
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.89
PRK12829	264	short chain dehydrogenase; Provisional	90.88
PRK06940	275	short chain dehydrogenase; Provisional	90.88
PRK06194	287	hypothetical protein; Provisional	90.88
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	90.87
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	90.86
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.84
PRK14851	679	hypothetical protein; Provisional	90.83
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.83
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.83
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.8
PRK06182	273	short chain dehydrogenase; Validated	90.79
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.74
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	90.73
PRK06720	169	hypothetical protein; Provisional	90.71
PRK10637	457	cysG siroheme synthase; Provisional	90.69
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.66
PLN02527	306	aspartate carbamoyltransferase	90.6
PLN02253	280	xanthoxin dehydrogenase	90.58
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	90.58
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	90.56
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	90.55
PRK06914	280	short chain dehydrogenase; Provisional	90.54
PLN03209	576	translocon at the inner envelope of chloroplast su	90.53
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	90.51
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.5
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	90.49
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	90.39
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	90.38
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.36

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=7.2e-42  Score=296.42  Aligned_cols=204  Identities=20%  Similarity=0.272  Sum_probs=169.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (226)
                      |||+++.+..-. ....+. ++...++.... .+.+++.+.++++|+++++..+++++.++++|+||||++.|+|+|++|
T Consensus         1 mki~~~~~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          1 MKIVILDAKTLG-DKDLSV-FEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             CeEEEEecCCCC-hhhHHH-HhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            467777653211 122222 33333433322 234567788899999988766899999999999999999999999999


Q ss_pred             hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCCh
Q 027226           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN  163 (226)
Q Consensus        92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G~  163 (226)
                      +++++++||.|+|+||+   ++.+||||+++++|+++|++..+++.++++.|...        .+++|+||||||||+|+
T Consensus        79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence            99999999999999999   89999999999999999999999999999999743        14689999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ||+++|+++++|||+|++|||+.+..   ....+|++++++||+|++|     +|.++|+.+.|++
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~  221 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKL  221 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHh
Confidence            99999999999999999999975432   4567899999999999999     7888999888764

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.6e-41  Score=298.13  Aligned_cols=220  Identities=61%  Similarity=0.986  Sum_probs=187.6

Q ss_pred             CcCCCCCCCCCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEE
Q 027226            2 EGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIM   81 (226)
Q Consensus         2 ~~~~~~~~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~   81 (226)
                      ++..+++++.+++|+++.+.++....+.+++++.++...+...+.+++.+.++++|+++++..++++++++.+|+||||+
T Consensus         8 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~   87 (347)
T PLN02928          8 DKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIM   87 (347)
T ss_pred             hhhccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEE
Confidence            34556778888899999877665445666666667655555555567778889999988876689999999999999999


Q ss_pred             ecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcC
Q 027226           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (226)
Q Consensus        82 ~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~  161 (226)
                      +.++|+|++|++++.++||.|+|+|++.++++.+||||+++++|+++|++..+.+.++++.|....+.+|.||||||||+
T Consensus        88 ~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~  167 (347)
T PLN02928         88 QFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGY  167 (347)
T ss_pred             ECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECC
Confidence            99999999999999999999999998754588999999999999999999999999999999766678999999999999


Q ss_pred             ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe-----ccCCccccc
Q 027226          162 GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF-----NEKGFSSGE  217 (226)
Q Consensus       162 G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~  217 (226)
                      |+||+++|++|++|||+|++|+|+.+..                   ....+|++++++||+|++|     +|.++|+.+
T Consensus       168 G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~  247 (347)
T PLN02928        168 GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE  247 (347)
T ss_pred             CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence            9999999999999999999999974321                   1356899999999999999     677888877


Q ss_pred             cccc
Q 027226          218 YCSR  221 (226)
Q Consensus       218 ~~~~  221 (226)
                      .+.+
T Consensus       248 ~l~~  251 (347)
T PLN02928        248 FLSS  251 (347)
T ss_pred             HHhc
Confidence            7653

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-42  Score=296.50  Aligned_cols=204  Identities=27%  Similarity=0.416  Sum_probs=173.0

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEe---cCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccC
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      .+++++...+..++   ..+.+... ....+.   ..+++++.+.++++|++++..++++++.++.+|+||||++.++|+
T Consensus         2 ~~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gv   77 (324)
T COG0111           2 MMIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGV   77 (324)
T ss_pred             CcceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEccccc
Confidence            35677777766542   33444433 233332   223445678899999888766789999999999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCChHH
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~IG  165 (226)
                      |++|.+++.++||.|+|+|+.   |+.+||||+++++|+++|+++.+++.++++.|..  ..+.+|+||||||||+|+||
T Consensus        78 d~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG  154 (324)
T COG0111          78 DNIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIG  154 (324)
T ss_pred             cccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHH
Confidence            999999999999999999998   9999999999999999999999999999999986  45679999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          166 VELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       166 ~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +++|+++++|||+|++|||+.+..       ....+||++|++||++++|     +|.++|+.+.|.+
T Consensus       155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~  222 (324)
T COG0111         155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAK  222 (324)
T ss_pred             HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhh
Confidence            999999999999999999965543       3467899999999999999     8889999888764

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-41  Score=293.14  Aligned_cols=206  Identities=19%  Similarity=0.258  Sum_probs=171.4

Q ss_pred             ceEEEeCCCCCC-chhhHHHHHhcCCCeEEecC-CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCcc
Q 027226           13 TRVLFCGPHFPA-SHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV   90 (226)
Q Consensus        13 ~~Ilv~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~i   90 (226)
                      |||+++...... .....+.+.+.++++.+... +.+++.+.++++|+++.+..++++++++++|+||||++.++|+|++
T Consensus         1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   80 (317)
T PRK06487          1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence            467777543211 11222333334566655332 3456778889999988876679999999999999999999999999


Q ss_pred             chhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCC
Q 027226           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG  162 (226)
Q Consensus        91 d~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G  162 (226)
                      |.+++.++||+|+|++|+   ++++||||+++++|+++|++..+++.++++.|...        .+.+|.||||||+|+|
T Consensus        81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G  157 (317)
T PRK06487         81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG  157 (317)
T ss_pred             CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence            999999999999999998   88999999999999999999999999999999643        2468999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +||+++|+++++|||+|++|+|+.+.. .+..+|++++++||+|++|     +|..+++.+.|++
T Consensus       158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~  222 (317)
T PRK06487        158 ELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL  222 (317)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence            999999999999999999999975433 4567899999999999999     7888999888764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.4e-41  Score=291.76  Aligned_cols=174  Identities=14%  Similarity=0.217  Sum_probs=156.6

Q ss_pred             CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHH
Q 027226           45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  124 (226)
Q Consensus        45 ~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~  124 (226)
                      +++++.+.++++|+++++..++++++++++|+||||++.++|+|++|.+++.++||.|+|+||+   ++.+||||+++++
T Consensus        34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~  110 (314)
T PRK06932         34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI  110 (314)
T ss_pred             ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence            3466778899999988766679999999999999999999999999999999999999999999   8899999999999


Q ss_pred             HHHhhcHHHHHHHHHhCCCCCC--------CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--CcccC
Q 027226          125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--SQVSC  194 (226)
Q Consensus       125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--~~~~~  194 (226)
                      |++.|++..+++.++++.|...        .+.+|+||||||||+|+||+++|+++++|||+|++|+++....  .+..+
T Consensus       111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~  190 (314)
T PRK06932        111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTP  190 (314)
T ss_pred             HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCC
Confidence            9999999999999999999642        2468999999999999999999999999999999999865332  24678


Q ss_pred             hhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          195 QSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       195 l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      |++++++||+|++|     +|.++++.+.|++
T Consensus       191 l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~  222 (314)
T PRK06932        191 FEEVLKQADIVTLHCPLTETTQNLINAETLAL  222 (314)
T ss_pred             HHHHHHhCCEEEEcCCCChHHhcccCHHHHHh
Confidence            99999999999999     7788998888764

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=7.1e-41  Score=291.24  Aligned_cols=203  Identities=15%  Similarity=0.217  Sum_probs=169.2

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEec-C---CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccC
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      +|+|+++.+..+   +..+.+ +...++.+.. .   +.+++.+.++++|+++++..++++++++++|+||||++.|+|+
T Consensus         2 ~~~vl~~~~~~~---~~~~~l-~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~   77 (323)
T PRK15409          2 KPSVILYKALPD---DLLQRL-EEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY   77 (323)
T ss_pred             CceEEEeCCCCH---HHHHHH-HhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence            378999987642   223333 3323443221 1   1234567789999998866689999999999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-----CCCccCCCEEEEEcCC
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG  162 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~gktvgIvG~G  162 (226)
                      |+||.+++.++||+|+|+||+   ++++||||+++++|++.|++..+++.+++|.|...     .+.+|+||||||||+|
T Consensus        78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            999999999999999999998   89999999999999999999999999999999632     3679999999999999


Q ss_pred             hHHHHHHHHHc-cCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          163 NIGVELAKRLR-PFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       163 ~IG~~vA~~l~-afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +||+++|++++ +|||+|++|+|+.+..      ....+|++++++||+|++|     +|.++|+.+.|++
T Consensus       155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~  225 (323)
T PRK15409        155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAK  225 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhc
Confidence            99999999998 9999999999975432      3456899999999999999     7778888887763

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=5.7e-40  Score=284.71  Aligned_cols=170  Identities=25%  Similarity=0.402  Sum_probs=154.4

Q ss_pred             ChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 027226           48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  126 (226)
Q Consensus        48 ~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~  126 (226)
                      ++.+.++++|++++. ..++++++++++|+||+|+..|+|+||||+++++++||.|+|+|++   +.++||||+++++|+
T Consensus        37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa  113 (324)
T COG1052          37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA  113 (324)
T ss_pred             HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence            346778999998886 6789999999999999999999999999999999999999999999   679999999999999


Q ss_pred             HhhcHHHHHHHHHhCCCCC------CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccC
Q 027226          127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSC  194 (226)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~  194 (226)
                      +.|++...++.+++|.|..      ..+.+++|||+||+|+|+||+++|+++++|||+|+||+|++++.      ..+.+
T Consensus       114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~  193 (324)
T COG1052         114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD  193 (324)
T ss_pred             HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc
Confidence            9999999999999999865      34679999999999999999999999999999999999998522      45667


Q ss_pred             hhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          195 QSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       195 l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      |+|++++||++++|     +|...|+.+.++
T Consensus       194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~  224 (324)
T COG1052         194 LDELLAESDIISLHCPLTPETRHLINAEELA  224 (324)
T ss_pred             HHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence            99999999999999     777777777654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-39  Score=290.61  Aligned_cols=212  Identities=21%  Similarity=0.232  Sum_probs=173.6

Q ss_pred             CCCCCCCCCceEEEeCCCCCCchhhHHHHHhcCC-CeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceE
Q 027226            4 MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYP-SIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKL   79 (226)
Q Consensus         4 ~~~~~~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~   79 (226)
                      ++.|.++.||+|++..+..+.   ..+.+.+... ++.+..  .+++++.+.++++|++++. ..++++++++++|+|||
T Consensus         2 ~~~~~~~~~~~ili~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~   78 (409)
T PRK11790          2 AKVSLPKDKIKFLLLEGVHQS---AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVA   78 (409)
T ss_pred             CCCCCCCCCeEEEEECCCCHH---HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeE
Confidence            466777888999998765322   2233322222 332211  2334667788999988664 35799999999999999


Q ss_pred             EEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEE
Q 027226           80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVF  157 (226)
Q Consensus        80 I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvg  157 (226)
                      |++.|+|+|++|.+++.++||.|+|+||+   ++.+||||+++++|++.|++..+.+.+++|.|...  .+.+|.|||||
T Consensus        79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvG  155 (409)
T PRK11790         79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLG  155 (409)
T ss_pred             EEECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEE
Confidence            99999999999999999999999999998   89999999999999999999999999999999753  46899999999


Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---C-cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH---S-QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~-~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      |||+|+||+++|+++++|||+|++|||+....   . ...+|++++++||+|++|     +|..+++.+.+++
T Consensus       156 IiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~  228 (409)
T PRK11790        156 IVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELAL  228 (409)
T ss_pred             EECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhc
Confidence            99999999999999999999999999975432   1 235899999999999999     6777888777653

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=1.9e-38  Score=277.39  Aligned_cols=202  Identities=21%  Similarity=0.325  Sum_probs=166.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec----CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccC
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      |+|+++.+..+   ...+.+.+.+ ++.+..    .+.+++.+.++++|+++++. .++++++++++|+||||++.++|+
T Consensus         3 ~kil~~~~~~~---~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~   78 (333)
T PRK13243          3 PKVFITREIPE---NGIEMLEEHF-EVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY   78 (333)
T ss_pred             ceEEEECCCCH---HHHHHHhcCc-eEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence            68888875432   2233333322 333221    12344667789999988753 479999999999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------CCCccCCCEEEE
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI  158 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~gktvgI  158 (226)
                      |++|.+++.++||.|+|++|+   ++.+||||+++++|++.|+++.+++.+++|.|...         .+.+|+||||||
T Consensus        79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            999999999999999999998   89999999999999999999999999999999641         357899999999


Q ss_pred             EcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       159 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ||+|+||+.+|++|++|||+|++|+|+++..      ....++++++++||+|++|     ++.++++.++++.
T Consensus       156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~  229 (333)
T PRK13243        156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKL  229 (333)
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc
Confidence            9999999999999999999999999986542      2356899999999999999     5678888776653

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.8e-36  Score=268.59  Aligned_cols=207  Identities=21%  Similarity=0.233  Sum_probs=165.2

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-----CCCCChhhhc-CCceEEEEc-CCCCCHHHHhcCCC--ceEE
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKLI   80 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~adv~i~~-~~~~~~~~l~~~~~--Lk~I   80 (226)
                      ..+++|+++.+..+.  ...+.+.+...++.+..     .+.+++.+.+ .++|++++. ..++++++++++|+  ||+|
T Consensus        13 ~~~~~v~~~~~~~~~--~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I   90 (386)
T PLN02306         13 NGKYRVVSTKPMPGT--RWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF   90 (386)
T ss_pred             CCCceEEEeCCCCcH--HHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence            345789988865431  12233322212333211     2345566666 569988875 35799999999985  6999


Q ss_pred             EecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCE
Q 027226           81 MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKT  155 (226)
Q Consensus        81 ~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gkt  155 (226)
                      ++.++|+|++|++++.++||+|+|++|+   ++.+||||+++++|++.|++..+++.+++|.|..     ..+.+|.|||
T Consensus        91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt  167 (386)
T PLN02306         91 SNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT  167 (386)
T ss_pred             EECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence            9999999999999999999999999998   8999999999999999999999999999998742     1367899999


Q ss_pred             EEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC-------C---------------cccChhhhcccCcEEEEe----
Q 027226          156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH-------S---------------QVSCQSSGWHCKQVISIF----  208 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-------~---------------~~~~l~ell~~sD~v~l~----  208 (226)
                      |||||+|+||+++|++++ +|||+|++|||+.+..       .               ...+|++++++||+|++|    
T Consensus       168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt  247 (386)
T PLN02306        168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD  247 (386)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence            999999999999999985 9999999999986421       0               125899999999999999    


Q ss_pred             -ccCCccccccccc
Q 027226          209 -NEKGFSSGEYCSR  221 (226)
Q Consensus       209 -~~~d~i~~~~~~~  221 (226)
                       +|.++|+.+.|++
T Consensus       248 ~~T~~lin~~~l~~  261 (386)
T PLN02306        248 KTTYHLINKERLAL  261 (386)
T ss_pred             hhhhhhcCHHHHHh
Confidence             7788888887764

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-36  Score=279.62  Aligned_cols=202  Identities=31%  Similarity=0.494  Sum_probs=167.9

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCC
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      |+|+++.+..+.   ..+ .++..+++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus         1 m~ili~~~~~~~---~~~-~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISPA---GLE-ILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCHH---HHH-HHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            478888765322   223 333334444432   2345677888999998875 35799999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChHHH
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGV  166 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~IG~  166 (226)
                      ++|++++.++||.|+|+|++   ++.+||||+++++|++.|+++.+++.++++.|...  .+.+|.||||||+|+|+||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   89999999999999999999999999999999753  46799999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          167 ELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       167 ~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ++|++|++|||+|++|||+....      ....++++++++||++++|     .+.++++.+.+++
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~  219 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAK  219 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhc
Confidence            99999999999999999975432      2344899999999999999     5677887766653

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-36  Score=267.09  Aligned_cols=172  Identities=27%  Similarity=0.394  Sum_probs=153.1

Q ss_pred             CChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (226)
Q Consensus        47 ~~~~~~~~~adv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~  123 (226)
                      +++.+.++++|++++.   ..+++++.++++|+||||++.++|+|++|++++.++||.|+|++|+   |+.+||||++++
T Consensus        82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l  158 (385)
T PRK07574         82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM  158 (385)
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence            4567889999999874   3468999999999999999999999999999999999999999998   899999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCCC----CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-c
Q 027226          124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-Q  191 (226)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~  191 (226)
                      +|++.|++..+++.++++.|...    .+.+|.|+||||||+|+||+++|++|++|||+|++|||+....       . .
T Consensus       159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~  238 (385)
T PRK07574        159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY  238 (385)
T ss_pred             HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee
Confidence            99999999999999999999742    3578999999999999999999999999999999999986321       1 1


Q ss_pred             ccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ..+++++++.||+|++|     ++.++++.+.+++
T Consensus       239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~  273 (385)
T PRK07574        239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR  273 (385)
T ss_pred             cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhc
Confidence            46899999999999999     5677887777654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=4e-36  Score=276.80  Aligned_cols=202  Identities=25%  Similarity=0.411  Sum_probs=165.7

Q ss_pred             eEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCCccc
Q 027226           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD   91 (226)
Q Consensus        14 ~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (226)
                      +|+++.+..+   ...+.+.+...++.+.. .+.+++.+.++++|+++++. .++++++++++|+||||++.|+|+|++|
T Consensus         1 ~vli~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   77 (525)
T TIGR01327         1 KVLIADPISP---DGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNID   77 (525)
T ss_pred             CEEEeCCCCH---HHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhc
Confidence            4677765532   22233322222333221 23456778889999988753 5799999999999999999999999999


Q ss_pred             hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChHHHHHH
Q 027226           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELA  169 (226)
Q Consensus        92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~IG~~vA  169 (226)
                      ++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|...  .+.+|.||||||+|+|+||+++|
T Consensus        78 ~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA  154 (525)
T TIGR01327        78 IEAATARGILVVNAPTG---NTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVA  154 (525)
T ss_pred             HHHHHHCCCEEEeCCCc---ChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHH
Confidence            99999999999999998   89999999999999999999999999999999753  46899999999999999999999


Q ss_pred             HHHccCCCEEEEEcCCCCCC------Cc-ccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          170 KRLRPFGVKIIATKRSWASH------SQ-VSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       170 ~~l~afG~~V~~~~r~~~~~------~~-~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ++|++|||+|++|||+....      .. ..+|+++++.||++++|     ++..+++.+++++
T Consensus       155 ~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~  218 (525)
T TIGR01327       155 KRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAK  218 (525)
T ss_pred             HHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhc
Confidence            99999999999999964332      12 24799999999999999     6678887777663

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-36  Score=257.04  Aligned_cols=206  Identities=23%  Similarity=0.349  Sum_probs=177.2

Q ss_pred             CCCCceEEEeCCCCCCchhhHHHHHhcCCCeEEe-cCCCCChhhhcCCceEEEEc-CCCCCHHHHh-cCCCceEEEecCc
Q 027226            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCIS-RANQMKLIMQFGV   85 (226)
Q Consensus         9 ~~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~-~~~~Lk~I~~~~a   85 (226)
                      +.++.+|+++.+..+..   ++.+.+..-++++. ..+.||+.+.++++|++++. .+++++++|+ ...+||+|.+.++
T Consensus         3 s~~~~~il~~e~~~~~~---~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~   79 (406)
T KOG0068|consen    3 SADMRKILVAESLDQAC---IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGI   79 (406)
T ss_pred             CCCcceEEEecccchHH---HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEeccc
Confidence            44555799998875432   33333444355543 34567888999999998884 6789999999 4579999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCCh
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN  163 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~  163 (226)
                      |+|++|++++.++||.|.|+|.+   |+.++||+++++++++.|++.+....++.|+|.+.  .+.+++|||+||+|||+
T Consensus        80 G~dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~Gr  156 (406)
T KOG0068|consen   80 GVDNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGR  156 (406)
T ss_pred             CccccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeeccc
Confidence            99999999999999999999998   88999999999999999999999999999999864  68999999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+++|+++++|||+|++||+.....      ++..+|+|+|+.+|++++|     .|+.+++++.|.
T Consensus       157 IGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA  224 (406)
T KOG0068|consen  157 IGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFA  224 (406)
T ss_pred             chHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHH
Confidence            99999999999999999999976554      4788999999999999999     888888887664

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=5e-36  Score=265.25  Aligned_cols=171  Identities=25%  Similarity=0.332  Sum_probs=151.3

Q ss_pred             CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (226)
Q Consensus        47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~  123 (226)
                      +++.+.++++|++++..   .+++++.++++|+||||++.++|+||||++++.++||.|+|++|+   |+.+||||++++
T Consensus        89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l  165 (386)
T PLN03139         89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR  165 (386)
T ss_pred             HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence            35677889999998742   358999999999999999999999999999999999999999998   999999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-c
Q 027226          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-Q  191 (226)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~  191 (226)
                      +|++.|++..+++.+++|.|..    ..+.+|.||||||||+|+||+++|++|++|||+|++|||+....       . .
T Consensus       166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~  245 (386)
T PLN03139        166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF  245 (386)
T ss_pred             HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee
Confidence            9999999999999999999974    24679999999999999999999999999999999999985332       1 1


Q ss_pred             ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ..++++++++||+|++|     .+.++++.+.++
T Consensus       246 ~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~  279 (386)
T PLN03139        246 EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIA  279 (386)
T ss_pred             cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHh
Confidence            35899999999999999     566777766655

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=4.6e-36  Score=261.90  Aligned_cols=204  Identities=18%  Similarity=0.269  Sum_probs=169.1

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCC--CceEEEecCc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV   85 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~--~Lk~I~~~~a   85 (226)
                      ||||+++... +++.++..++++.+ ++++...+   .++..+.++++|+++++ ..++++++++++|  +||||++.++
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            5899999866 44466777777666 55554421   23457888999998875 4589999999997  9999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCC--CC-CCCCccCCCEEEEEcCC
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GV-PTGETLLGKTVFILGFG  162 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w--~~-~~~~~l~gktvgIvG~G  162 (226)
                      |+|++|.+++.++||.|+|+||+   ++++||||+++++|++.|++..+++.++++.|  .. ..+++|+|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999999   88999999999999999999999999999865  33 24679999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCCC----cccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASHS----QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~~----~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +||+.+|++|++|||+|++|||++....    ...+++++++.||++++|     .+..+++.+.++
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~  222 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFD  222 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHh
Confidence            9999999999999999999999865421    134799999999999999     234556555543

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.3e-34  Score=250.95  Aligned_cols=199  Identities=15%  Similarity=0.208  Sum_probs=161.8

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (226)
                      |.|++..+... ...|.+.+.+.+|++++..++.++    .+++|+++++.  .+.+.++ .|+||||++.|+|+|++|.
T Consensus         1 ~~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~   72 (312)
T PRK15469          1 MDIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILS   72 (312)
T ss_pred             CEEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhh
Confidence            46777776633 245777777778988876544433    46889988874  3567775 5899999999999999973


Q ss_pred             hH-----HHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHH
Q 027226           93 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (226)
Q Consensus        93 ~~-----~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~  167 (226)
                      ..     +.++||+|+|+++.  +++.+||||+++++|++.|++..+.+.++++.|......++.||||||||+|+||++
T Consensus        73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~  150 (312)
T PRK15469         73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK  150 (312)
T ss_pred             hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence            22     34589999999764  278999999999999999999999999999999876667899999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          168 LAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       168 vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +|++|++|||+|++|+|+.+..      ....+|++++++||++++|     .+..+++.+++++
T Consensus       151 vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~  215 (312)
T PRK15469        151 VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ  215 (312)
T ss_pred             HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc
Confidence            9999999999999999976542      2346799999999999999     5667777666653

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=4.5e-34  Score=249.81  Aligned_cols=179  Identities=17%  Similarity=0.316  Sum_probs=151.8

Q ss_pred             hhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEecCccCCccchhHHHhCC
Q 027226           26 HNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRCG   99 (226)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG~d~id~~~~~~~g   99 (226)
                      ..+.+.+.+.+ ++++..   ...++..+.++++|++++. ..++++++++++|+  ||||++.|+|+|++|.++++++|
T Consensus        14 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~g   92 (332)
T PRK08605         14 APYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYN   92 (332)
T ss_pred             HHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCC
Confidence            55666666654 444322   2334556778999988774 46799999999996  99999999999999999999999


Q ss_pred             cEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCC--C-CCCCccCCCEEEEEcCChHHHHHHHHH-ccC
Q 027226          100 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFGNIGVELAKRL-RPF  175 (226)
Q Consensus       100 i~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~gktvgIvG~G~IG~~vA~~l-~af  175 (226)
                      |.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.  . ..+++|+|+||||||+|+||+++|++| ++|
T Consensus        93 i~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~  169 (332)
T PRK08605         93 LIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGY  169 (332)
T ss_pred             CEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            999999998   889999999999999999999999999999764  2 246799999999999999999999999 899


Q ss_pred             CCEEEEEcCCCCCC----Cc-ccChhhhcccCcEEEEe
Q 027226          176 GVKIIATKRSWASH----SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       176 G~~V~~~~r~~~~~----~~-~~~l~ell~~sD~v~l~  208 (226)
                      ||+|++||++....    .. ..+++++++++|++++|
T Consensus       170 g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~  207 (332)
T PRK08605        170 GSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLH  207 (332)
T ss_pred             CCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEe
Confidence            99999999986542    12 34899999999999999

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=8.7e-34  Score=244.60  Aligned_cols=190  Identities=18%  Similarity=0.208  Sum_probs=149.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (226)
                      |++++..+..+.   ..+.+.+.++..++...+      ...++|++++...      +...++||||++.++|+|++|.
T Consensus         1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~   65 (303)
T PRK06436          1 MNVYVNFPMSKK---LLEICRDILDLDDVHWYP------DYYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDV   65 (303)
T ss_pred             CeEEEEccCCHH---HHHHHHhhcccceeEecc------ccCCCCEEEecCC------cCCCCCeEEEEECCcccCcccH
Confidence            346666555332   222222344444444322      2457888865321      2346899999999999999999


Q ss_pred             hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHH
Q 027226           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  172 (226)
Q Consensus        93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l  172 (226)
                      +++.++++.++|. |.   ++.+||||+++++|+++|+++.+.+.++++.|....+.+|+||||||+|+|+||+++|+++
T Consensus        66 ~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l  141 (303)
T PRK06436         66 SGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLA  141 (303)
T ss_pred             HHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHH
Confidence            9998888877774 65   7899999999999999999999999999999987667899999999999999999999999


Q ss_pred             ccCCCEEEEEcCCCCCC-C--cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          173 RPFGVKIIATKRSWASH-S--QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       173 ~afG~~V~~~~r~~~~~-~--~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ++|||+|++|+|+..+. .  ...++++++++||++++|     ++.++++.+++++
T Consensus       142 ~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~  198 (303)
T PRK06436        142 KAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSL  198 (303)
T ss_pred             HHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhc
Confidence            99999999999976443 1  256899999999999999     6677887776653

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.7e-33  Score=248.24  Aligned_cols=183  Identities=19%  Similarity=0.285  Sum_probs=149.6

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCccc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (226)
                      |||++.... +    +..++++.+.++.... ..+...+.++++|+++++ ..++++++++ .|+||||++.++|+||+|
T Consensus         1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (378)
T PRK15438          1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD   73 (378)
T ss_pred             CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence            688888654 2    2345555554554432 122235668999999885 4578999886 799999999999999999


Q ss_pred             hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH
Q 027226           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (226)
Q Consensus        92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~  171 (226)
                      .+++.++||.|+|+||+   |+.+||||+++++|++.|+                .+.+|.||||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~  134 (378)
T PRK15438         74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR  134 (378)
T ss_pred             HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence            99999999999999998   9999999999999999985                1458999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe----c-----cCCccccccccc
Q 027226          172 LRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF----N-----EKGFSSGEYCSR  221 (226)
Q Consensus       172 l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~----~-----~~d~i~~~~~~~  221 (226)
                      |++|||+|++|||.....   ....+|++++++||++++|    .     |..+++.+++++
T Consensus       135 l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~  196 (378)
T PRK15438        135 LEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRS  196 (378)
T ss_pred             HHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhc
Confidence            999999999999864422   2456899999999999999    2     667888877763

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.5e-32  Score=242.96  Aligned_cols=183  Identities=15%  Similarity=0.251  Sum_probs=149.4

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCCccc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD   91 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (226)
                      |||++.....     +.+++++.+.++.... ..+...+.++++|+++++. .++++++++ .++||||++.++|+||+|
T Consensus         1 mkI~~d~~~p-----~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (381)
T PRK00257          1 MKIVADENIP-----LLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD   73 (381)
T ss_pred             CEEEEecCch-----hHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence            6888887762     2355555555444322 1222356789999988753 579999997 589999999999999999


Q ss_pred             hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH
Q 027226           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (226)
Q Consensus        92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~  171 (226)
                      .+++.++||.|+|+||+   |+.+||||+++++|++.|+                .+.++.||||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~  134 (381)
T PRK00257         74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV  134 (381)
T ss_pred             HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence            99999999999999998   9999999999999999875                2568999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe----c-----cCCccccccccc
Q 027226          172 LRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF----N-----EKGFSSGEYCSR  221 (226)
Q Consensus       172 l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~----~-----~~d~i~~~~~~~  221 (226)
                      +++|||+|++||+.....   ....+|++++++||++++|    +     |..+++.+++++
T Consensus       135 l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~  196 (381)
T PRK00257        135 LRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLAS  196 (381)
T ss_pred             HHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhc
Confidence            999999999999864322   3456899999999999999    2     557777776653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=99.97  E-value=2.4e-31  Score=229.10  Aligned_cols=169  Identities=31%  Similarity=0.450  Sum_probs=145.5

Q ss_pred             hhhcCCceEEEEc--CCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 027226           50 PDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  126 (226)
Q Consensus        50 ~~~~~~adv~i~~--~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~  126 (226)
                      .+.+.+..+.+.+  ....+.+.+... |+||+|.++|+|+||+|+++++++||+|+|+|+.   +.++|||++++++|.
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~  131 (336)
T KOG0069|consen   55 LKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLA  131 (336)
T ss_pred             hhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHH
Confidence            3445555555443  345667777765 9999999999999999999999999999999999   789999999999999


Q ss_pred             HhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccCh
Q 027226          127 LLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQ  195 (226)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l  195 (226)
                      +.|++...++.++++.|..    +.+..+.||||||+|+|+||+++|+||++||+.+.|++|+....       ....++
T Consensus       132 ~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~  211 (336)
T KOG0069|consen  132 LLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDI  211 (336)
T ss_pred             HHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCH
Confidence            9999999999999999932    25689999999999999999999999999999999999976643       235689


Q ss_pred             hhhcccCcEEEEe-----ccCCccccccccc
Q 027226          196 SSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       196 ~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ++++++||+++++     .|..+++.++|+.
T Consensus       212 ~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~  242 (336)
T KOG0069|consen  212 EELLANSDVIVVNCPLTKETRHLINKKFIEK  242 (336)
T ss_pred             HHHHhhCCEEEEecCCCHHHHHHhhHHHHHh
Confidence            9999999999999     7788888887753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.88  E-value=5e-23  Score=165.27  Aligned_cols=101  Identities=31%  Similarity=0.483  Sum_probs=88.0

Q ss_pred             HHHHHHHhhcHHHHHHHHHhCCC---CCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C
Q 027226          121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S  190 (226)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~  190 (226)
                      ++++|++.|+++.+.+.++++.|   ....+++++|+||||+|+|+||+++|++|++|||+|++|+|+.+..       .
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            58999999999999999999999   5667899999999999999999999999999999999999998753       3


Q ss_pred             cccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          191 QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       191 ~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ...+|++++++||+|++|     +|..+|+.+++++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~  116 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK  116 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence            578999999999999999     6688999888764

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.73  E-value=1.7e-17  Score=142.46  Aligned_cols=142  Identities=17%  Similarity=0.224  Sum_probs=113.6

Q ss_pred             hcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEecCccCCccchh-HHHhCCcEEE------ecCC
Q 027226           52 VIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG  107 (226)
Q Consensus        52 ~~~~adv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~-~~~~~gi~v~------n~~~  107 (226)
                      .++++|+++...+                 .+++++++.+|   .++...+|+++.+++ .++++||+|+      |++.
T Consensus        51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~  127 (287)
T TIGR02853        51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI  127 (287)
T ss_pred             hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence            3688898886311                 24578888887   367788899999888 8899999999      8887


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       108 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +   |+.++||+++++++..                   .+.+++|++++|+|+|.||+.+|++|++||++|++++|+..
T Consensus       128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            7   8899999999977743                   13489999999999999999999999999999999999864


Q ss_pred             CC----------CcccChhhhcccCcEEEEeccCCcccccc
Q 027226          188 SH----------SQVSCQSSGWHCKQVISIFNEKGFSSGEY  218 (226)
Q Consensus       188 ~~----------~~~~~l~ell~~sD~v~l~~~~d~i~~~~  218 (226)
                      ..          ....++++++.++|+++++-...+++.+.
T Consensus       186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~  226 (287)
T TIGR02853       186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADV  226 (287)
T ss_pred             HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHH
Confidence            31          12345778899999999986555555443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.70  E-value=2.9e-17  Score=125.63  Aligned_cols=99  Identities=22%  Similarity=0.385  Sum_probs=76.2

Q ss_pred             EEEeCCCCCCchhhHHHHHhcCCCeEEecC-CCCChhhhcCCceEEEEcCCC-CCHHHHhcCCCceEEEecCccCCccch
Q 027226           15 VLFCGPHFPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVDI   92 (226)
Q Consensus        15 Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~adv~i~~~~~-~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (226)
                      ||++.+..++.   .+.+.+.+ ++.+... +.+++.+.++++|+++++... ++++.++.+|+||||++.|+|+|++|+
T Consensus         1 ili~~~~~~~~---~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~   76 (133)
T PF00389_consen    1 ILITDPLPDEE---IERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDL   76 (133)
T ss_dssp             EEESSS-SHHH---HHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-H
T ss_pred             eEEeccCCHHH---HHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccH
Confidence            57777664332   22233334 6655443 345677889999999997655 999999999999999999999999999


Q ss_pred             hHHHhCCcEEEecCCCCCCCchhHHHHH
Q 027226           93 NAATRCGIKVARIPGDVTGNAASCAELT  120 (226)
Q Consensus        93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~  120 (226)
                      +++.++||.|+|+||+   ++.+||||+
T Consensus        77 ~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   77 EAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHhhCeEEEEEeCCc---CCcchhccc
Confidence            9999999999999999   899999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.69  E-value=4.1e-17  Score=140.51  Aligned_cols=143  Identities=24%  Similarity=0.371  Sum_probs=129.9

Q ss_pred             CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCC
Q 027226           63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK  142 (226)
Q Consensus        63 ~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~  142 (226)
                      +..++++.+++++-||++...+.|+|++|+.++.+.+|.+||.|+.   .-+.+|.-++.++|.++|+-....+..+++.
T Consensus        82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~  158 (435)
T KOG0067|consen   82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT  158 (435)
T ss_pred             ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence            4578999999999999999999999999999999999999999998   5599999999999999999999999999998


Q ss_pred             CCCC---------CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCC-------cccChhhhcccCcEEE
Q 027226          143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-------QVSCQSSGWHCKQVIS  206 (226)
Q Consensus       143 w~~~---------~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~-------~~~~l~ell~~sD~v~  206 (226)
                      |...         ....+.|.++|++|+|++|++|+.++++||+.|+.||++..+..       ....|++++.++|.++
T Consensus       159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S  238 (435)
T KOG0067|consen  159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVS  238 (435)
T ss_pred             eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhcccee
Confidence            8542         34678999999999999999999999999999999999877651       2445899999999999


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      +|
T Consensus       239 ~h  240 (435)
T KOG0067|consen  239 LH  240 (435)
T ss_pred             ee
Confidence            99

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.56  E-value=8.2e-15  Score=132.27  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=98.6

Q ss_pred             CCceEEE-ecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccC
Q 027226           75 NQMKLIM-QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (226)
Q Consensus        75 ~~Lk~I~-~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (226)
                      ++++-+. -+++|+..+- +...-..+|+|+|++++   +..+++|+++++++++...+      ++.+      +..+.
T Consensus       189 ~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~La  253 (476)
T PTZ00075        189 KKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIA  253 (476)
T ss_pred             hccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcC
Confidence            3444333 4577887752 22223368999999999   77999999999999988333      2322      46899


Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      ||||||+|+|.||+.+|++|++|||+|+++++.+...       ....+++++++.+|+++++ .+.++|+.+.+
T Consensus       254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~  328 (476)
T PTZ00075        254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHM  328 (476)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHH
Confidence            9999999999999999999999999999997764332       2345789999999999998 44566665555

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.47  E-value=8.3e-13  Score=114.04  Aligned_cols=146  Identities=18%  Similarity=0.199  Sum_probs=107.6

Q ss_pred             hhcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCC---
Q 027226           51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT---  110 (226)
Q Consensus        51 ~~~~~adv~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~---  110 (226)
                      +.++++|+++...+                 .++.+.++.+|++..+. .|.+.++++ +.+.++||++.+..+...   
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            44788999886421                 12678899999997555 588888987 678999999998764200   


Q ss_pred             CCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-
Q 027226          111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-  189 (226)
Q Consensus       111 ~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-  189 (226)
                      .++.++||.++...+..                   ....++|++++|+|+|.+|+.+++.|+++|++|++++|++... 
T Consensus       129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            16788888877754321                   1356889999999999999999999999999999999986431 


Q ss_pred             ---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226          190 ---------SQVSCQSSGWHCKQVISIFNEKGFSSGE  217 (226)
Q Consensus       190 ---------~~~~~l~ell~~sD~v~l~~~~d~i~~~  217 (226)
                               ....++.+.+..+|++.......+++.+
T Consensus       190 ~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~  226 (296)
T PRK08306        190 RITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE  226 (296)
T ss_pred             HHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH
Confidence                     1223567788999999876444444443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.13  E-value=3.2e-11  Score=104.19  Aligned_cols=71  Identities=30%  Similarity=0.392  Sum_probs=57.6

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe----ccCCcccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF----NEKGFSSG  216 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~----~~~d~i~~  216 (226)
                      ...|+||||||||+|+||+++|++|++|||+|+++++..+..       ....+++++++.||++++|    .+.+++++
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence            468999999999999999999999999999999997754331       2345899999999999999    34455544


Q ss_pred             cc
Q 027226          217 EY  218 (226)
Q Consensus       217 ~~  218 (226)
                      +.
T Consensus        91 ei   92 (335)
T PRK13403         91 EV   92 (335)
T ss_pred             HH
Confidence            33

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.80  E-value=9.3e-09  Score=92.63  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             EecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEE
Q 027226           81 MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFIL  159 (226)
Q Consensus        81 ~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIv  159 (226)
                      =-+++|+..+- +....+.++||.|+++..+   ...-|...+.--+....+.+            .....+.|++|+|+
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~Gk~VlVi  218 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAGKVVVVA  218 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCCCEEEEE
Confidence            34577877752 2222346899999998733   43323221111111111110            11345899999999


Q ss_pred             cCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          160 GFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       160 G~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      |+|.||+.+|++|+++|++|+++++.+...       ....++++++..+|+++.. .+.++++.+.+
T Consensus       219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~  286 (425)
T PRK05476        219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHM  286 (425)
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence            999999999999999999999999876442       2334678899999999876 33455554443

>PLN02494 adenosylhomocysteinase

Probab=98.77  E-value=9.4e-09  Score=93.11  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      ..+.||+|+|+|+|.||+.+|+++++|||+|+++++++...       ....+++++++.+|+++.. .+.++++.+.+.
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~  329 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMR  329 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHh
Confidence            45899999999999999999999999999999998876431       2334688999999999986 334555555443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.64  E-value=1.7e-08  Score=79.28  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=51.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      ...+.||++.|+|||.+|+.+|+.|+++|++|+.++..|-..       ++...++++++.+|+++.. ...++|..+.+
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~   97 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHF   97 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHH
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHH
Confidence            467999999999999999999999999999999999875432       4566789999999998875 66677766654


Q ss_pred             c
Q 027226          220 S  220 (226)
Q Consensus       220 ~  220 (226)
                      .
T Consensus        98 ~   98 (162)
T PF00670_consen   98 R   98 (162)
T ss_dssp             H
T ss_pred             H
Confidence            3

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.61  E-value=4.8e-08  Score=87.54  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      ...+.|++|+|+|+|.||+.+|+++++||++|+++++.+...       ....+++++++.+|+++.. .+.++++.+.+
T Consensus       190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~  269 (406)
T TIGR00936       190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHF  269 (406)
T ss_pred             CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence            346899999999999999999999999999999998765332       2234578888999997665 44455554333

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.49  E-value=2e-07  Score=81.50  Aligned_cols=61  Identities=28%  Similarity=0.345  Sum_probs=51.5

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ...++++||||||+|++|+++|+.|+.+|++|+++++.....        ....+.+++++.+|+|.++
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLa   80 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMIL   80 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEc
Confidence            467999999999999999999999999999999887653322        2234778999999999998

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.32  E-value=6e-07  Score=73.35  Aligned_cols=70  Identities=24%  Similarity=0.331  Sum_probs=51.8

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcc-cCcEEEEeccCCccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWH-CKQVISIFNEKGFSSGE  217 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~-~sD~v~l~~~~d~i~~~  217 (226)
                      +.+++||+++|+|+|++|+.+|++|..+|++|+++|++....        ....+.++++. .+|++....-.+.|+.+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~  101 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDD  101 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccccccCHH
Confidence            567999999999999999999999999999999999875421        11123355554 68888755444555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.27  E-value=1.4e-06  Score=75.97  Aligned_cols=58  Identities=29%  Similarity=0.368  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      |+||+|||||+|++|+++|+.|+.+|++|+++++.....        ....+..++++.+|+|.++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLa   66 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNL   66 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEe
Confidence            579999999999999999999999999987665543221        2234577888999999999

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.13  E-value=4.1e-06  Score=75.46  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      +..+.|++|+|+|+|.||+.+|++++++|++|+++++++...       .....+++.+..+|+++..
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~a  264 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTT  264 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEEC
Confidence            456899999999999999999999999999999998875432       2233467788889988876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.12  E-value=1.4e-06  Score=68.82  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=45.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++||+||+|..|+.+|+.|..-|.+|++|||++...        ....+..|+...+|++.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEee
Confidence            589999999999999999999999999999985432        2467889999999988876

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.08  E-value=2.4e-06  Score=77.09  Aligned_cols=61  Identities=23%  Similarity=0.248  Sum_probs=43.7

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC------CC-------CCcccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW------AS-------HSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~------~~-------~~~~~~l~ell~~sD~v~l~  208 (226)
                      ...|+||||+|||+|+||++-|.-|+..|.+|++--|..      +.       .....+++|+++.||+|+++
T Consensus        31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviL  104 (487)
T PRK05225         31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINL  104 (487)
T ss_pred             hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEc
Confidence            468999999999999999966665565566555211111      11       13456789999999999998

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.99  E-value=1.4e-05  Score=69.51  Aligned_cols=52  Identities=25%  Similarity=0.158  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.+|||+|+|.+|+++|++|...|.+|..|+|+...     +++++++.+|++.+.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-----~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-----SLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-----CHHHHHhcCCEEEEE
Confidence            3568999999999999999999999999999997543     678888899999887

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.97  E-value=8.5e-06  Score=63.89  Aligned_cols=58  Identities=28%  Similarity=0.411  Sum_probs=46.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      |++|||.|||||+-|.+-|.-|+.-|.+|+.-.|.....        .+..+..|..+.+|++.++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L   67 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLL   67 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEe
Confidence            689999999999999999999999999999877765532        4567889999999999998

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN02712 arogenate dehydrogenase

Probab=97.94  E-value=1.5e-05  Score=76.14  Aligned_cols=62  Identities=27%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C---cccChhhhcc-cCcEEEEe
Q 027226          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S---QVSCQSSGWH-CKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~---~~~~l~ell~-~sD~v~l~  208 (226)
                      .+..+.+++|||||+|.||+.+|+.++.+|++|++|+|+....    .   ...++++++. .+|+|.+.
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILa  432 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLC  432 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEEC
Confidence            4577889999999999999999999999999999999974321    1   1335667665 58999988

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.86  E-value=1.2e-05  Score=69.06  Aligned_cols=54  Identities=17%  Similarity=0.139  Sum_probs=46.0

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.+...|++|++|+|++...        ....+.++++..+|++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~   62 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTM   62 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEe
Confidence            48999999999999999999999999999986432        1245677889999999987

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.81  E-value=2.1e-05  Score=67.69  Aligned_cols=55  Identities=20%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|||||+|.+|+.+|+.+...|.+|++|+|++...        ....+.++++..+|++.+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~   65 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITM   65 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEe
Confidence            579999999999999999999999999999975432        1235678888999999988

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.77  E-value=0.00039  Score=62.08  Aligned_cols=149  Identities=11%  Similarity=-0.022  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCC---CC--chhHHHHHHHHHHHHh
Q 027226           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT---GN--AASCAELTIYLMLGLL  128 (226)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~---~~--~~~vAE~~l~~~L~~~  128 (226)
                      ++|+++-.. .+..+.++.+ ++--++..+.-..+....+.+.++++..........   ..  -.++|+.+=+......
T Consensus        66 ~~dii~~Vk-~p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a  144 (370)
T TIGR00518        66 DAELVLKVK-EPLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG  144 (370)
T ss_pred             cCCEEEEeC-CCCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence            478887432 3445555554 455555555554555555677777766544222100   00  0223333322221111


Q ss_pred             -hcHHHHHHHHHhCCC-CCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C---------c
Q 027226          129 -RKQNEMRMAIEQKKL-GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S---------Q  191 (226)
Q Consensus       129 -R~~~~~~~~~~~~~w-~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~---------~  191 (226)
                       ..+.+   . ..|+= .......+.+++|.|+|.|.+|+.+++.|+.+|++|.++|+++...      .         .
T Consensus       145 a~~~~~---~-~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~  220 (370)
T TIGR00518       145 AYHLEK---T-QGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSN  220 (370)
T ss_pred             HHHhHh---h-cCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCC
Confidence             11111   0 00110 0011234678899999999999999999999999999999864321      0         1


Q ss_pred             ccChhhhcccCcEEEEe
Q 027226          192 VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~  208 (226)
                      ...+.+.++.+|+++..
T Consensus       221 ~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       221 AYEIEDAVKRADLLIGA  237 (370)
T ss_pred             HHHHHHHHccCCEEEEc
Confidence            23467778889988875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02256 arogenate dehydrogenase

Probab=97.76  E-value=4e-05  Score=66.58  Aligned_cols=58  Identities=29%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhc-ccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell-~~sD~v~l~  208 (226)
                      -.+++|||||+|.||+.+|+.++..|.+|++|+++....       ....++++++ ..+|++.+.
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVila   99 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLC   99 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEe
Confidence            356799999999999999999999999999999985321       1123556665 468999988

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.75  E-value=7.4e-05  Score=59.40  Aligned_cols=66  Identities=21%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             CccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEeccC-Ccccccccc
Q 027226          149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIFNEK-GFSSGEYCS  220 (226)
Q Consensus       149 ~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~~~~-d~i~~~~~~  220 (226)
                      ..+.||++.|+|.|.+ |+.+|+.|...|++|...+|+.      .++.+.+.++|+++....+ .++..+.+.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIsat~~~~ii~~~~~~  107 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIVAVGKPGLVKGDMVK  107 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEEcCCCCceecHHHcc
Confidence            5799999999999985 9999999999999999999873      3778899999999988333 455555443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=7.4e-05  Score=64.07  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=57.7

Q ss_pred             CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||+|.|||.|.| |+.+|.+|...|++|+.+..+      ..+|.+.+++||+++.. .+.+++..++++.
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~  222 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------TRDLAAHTRQADIVVAAVGKRNVLTADMVKP  222 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------CCCHHHHhhhCCEEEEcCCCcCccCHHHcCC
Confidence            46899999999999999 999999999999999987543      23789999999999988 7777777766553

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.73  E-value=1.5e-05  Score=56.88  Aligned_cols=54  Identities=24%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCC---CEEE-EEcCCCCCC------Cc----ccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASH------SQ----VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG---~~V~-~~~r~~~~~------~~----~~~l~ell~~sD~v~l~  208 (226)
                      ||||||+|++|+++++.+..-|   .+|+ +++|+++..      .+    ..+..+++..+|++.+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila   68 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA   68 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE
Confidence            6999999999999999999999   8999 448876542      11    22677888999999887

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00012  Score=63.34  Aligned_cols=66  Identities=11%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      +.++.||+|+|||.| .+|+.+|.+|..-|++|+.|+++.+      ++.++.++||+++.. ...++|...++
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsavg~~~~v~~~~i  221 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------DAKALCRQADIVVAAVGRPRLIDADWL  221 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEecCChhcccHhhc
Confidence            468999999999996 9999999999999999999977633      678999999999887 55566665554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.67  E-value=0.00018  Score=64.24  Aligned_cols=52  Identities=17%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      ..++|+||| +|.+|+.+|+.|+.-|..|.+|+++..     .+.+++++.+|+|.+.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----~~~~~~~~~aDlVila  149 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----DRAEDILADAGMVIVS  149 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----hhHHHHHhcCCEEEEe
Confidence            558999999 999999999999999999999998632     3567888999999887

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.63  E-value=0.00013  Score=64.92  Aligned_cols=55  Identities=20%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHcc-CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~a-fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      +...||+|||+ |-||+.+|+.++. +|.+|+++|+...   ...++++.++.+|+|.+.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---~~~~~~~~v~~aDlVila   58 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---GSLDPATLLQRADVLIFS   58 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---ccCCHHHHhcCCCEEEEe
Confidence            35679999999 9999999999984 6999999998522   244677889999999998

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.62  E-value=7.1e-05  Score=64.68  Aligned_cols=55  Identities=11%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|||||+|.+|..+|+.|...|.+|++|||++...        ....+..++++.+|++.+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~   64 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITM   64 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEe
Confidence            479999999999999999999999999999975432        1245677888999999887

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=97.61  E-value=6.8e-05  Score=65.55  Aligned_cols=71  Identities=24%  Similarity=0.306  Sum_probs=57.7

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      -.+.||++.|.|||..|+-+|.+|+++|++|+.+.-.|-..       ++...+++....+|+++-. ...|+|..+-+
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~  283 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHF  283 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHH
Confidence            46889999999999999999999999999999987765443       4566678888999987665 66777766543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.56  E-value=0.0002  Score=59.64  Aligned_cols=37  Identities=41%  Similarity=0.583  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .++.+++|.|.|||++|+.+|++|..+|++|+++..+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6789999999999999999999999999999987665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.56  E-value=5.6e-05  Score=57.78  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=49.7

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCCC--------------CcccChhhhcccCcEEEEeccC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH--------------SQVSCQSSGWHCKQVISIFNEK  211 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~~~~  211 (226)
                      ..++++++.|+|.|.+|++++..|...|++ |+.++|+....              ....++.+.+..+|+++.....
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~   85 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS   85 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence            479999999999999999999999999997 99999975431              1344555667888888877433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.51  E-value=0.00013  Score=64.75  Aligned_cols=55  Identities=20%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-----cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-----QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-----~~~~l~ell~~sD~v~l~  208 (226)
                      ++|+|||+|.||+.+|+.++..|.+|..|++++...       .     ...+++++++.+|++.+.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila   67 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA   67 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe
Confidence            579999999999999999999998888888765432       0     123566788999999988

>PLN02712 arogenate dehydrogenase

Probab=97.51  E-value=0.00011  Score=70.24  Aligned_cols=60  Identities=30%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhc-ccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell-~~sD~v~l~  208 (226)
                      ..-+.++|||||+|.||+.+|+.++.+|.+|++|+|+....       ....++++++ ..+|+|.+.
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLa  115 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLC  115 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEc
Confidence            34445799999999999999999999999999999973221       1123556655 568999998

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.48  E-value=0.00028  Score=60.59  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +..+.||++.|+|.|. +|+.+|.+|...|++|+.+.++.      .+|.+.+++||+++.. ....++..+.++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIsAvg~p~~i~~~~vk  221 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------KDMASYLKDADVIVSAVGKPGLVTKDVVK  221 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEECCCCCcccCHHHcC
Confidence            4579999999999999 99999999999999999887752      3689999999999988 555577666554

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.47  E-value=0.00012  Score=62.63  Aligned_cols=54  Identities=22%  Similarity=0.270  Sum_probs=41.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.||+.+|+.|+..|.+|++|+++....        . ......+.+..+|++.+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVila   64 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILA   64 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEc
Confidence            79999999999999999998899999999975321        0 111112457888988887

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.46  E-value=0.00018  Score=61.47  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHcc--CCCEEE-EEcCCCCCC----------CcccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASH----------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~a--fG~~V~-~~~r~~~~~----------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ...+|||||+|+||+.+++.+..  .++++. .++|++...          ....++++++...|+|++..
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~t   75 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAA   75 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECC
Confidence            45799999999999999999975  588876 567754321          12467899999999999883

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.45  E-value=0.00012  Score=63.29  Aligned_cols=54  Identities=17%  Similarity=0.252  Sum_probs=43.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhccc---CcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~---sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.+...|.+|++|||++...        ....+.+++...   +|++.+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEE
Confidence            69999999999999999999999999999975431        124567777765   5787776

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.41  E-value=0.00026  Score=54.80  Aligned_cols=64  Identities=25%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC--------C-----cccChhhhcccCcEEEEeccCCc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH--------S-----QVSCQSSGWHCKQVISIFNEKGF  213 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~--------~-----~~~~l~ell~~sD~v~l~~~~d~  213 (226)
                      .+.+++++|+|.|.+|+.+++.+...| .+|..++|+....        .     ...++++++..+|++++.-..+.
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~   93 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM   93 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCC
Confidence            466899999999999999999999886 6899999975432        0     23355667888999988844444

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.39  E-value=0.00016  Score=62.04  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=56.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      -+.||.+.|.|||.+|+-+|..|++||++|+...-.|-..       ++...++|..++.|+++-. ...|+|.++-|
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~H~  288 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGEHF  288 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhHHHH
Confidence            5679999999999999999999999999999876543221       5677899999999988776 56677766544

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.36  E-value=0.00018  Score=62.33  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhccc---CcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~---sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|...|.+|.+|||++...        ....+.+++...   +|++.+.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEE
Confidence            79999999999999999999999999999986432        123456677665   5776666

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.34  E-value=0.00056  Score=59.12  Aligned_cols=65  Identities=12%  Similarity=0.194  Sum_probs=53.8

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEc-CCCCCCCcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~-r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      +.++.||+|+||| .|.+|+.+|.+|..-|++|+.|+ |+.       +++++.+.||+++.. ....++...++
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------~l~e~~~~ADIVIsavg~~~~v~~~~l  220 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------DLPAVCRRADILVAAVGRPEMVKGDWI  220 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------CHHHHHhcCCEEEEecCChhhcchhee
Confidence            3589999999999 99999999999998899999995 542       578999999999887 55555555543

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.33  E-value=0.00043  Score=56.61  Aligned_cols=55  Identities=24%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++++|+|.|+||..+|+++...|.+|+.-+|+.++.           ....+.++..+.+|++.|.
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLA   67 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLA   67 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEe
Confidence            589999999999999999999999998886654432           2345667888899999987

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.32  E-value=0.00013  Score=55.33  Aligned_cols=59  Identities=22%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEE-cCCCCCC---------CcccChhhhcccCcEEEEec
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH---------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~-~r~~~~~---------~~~~~l~ell~~sD~v~l~~  209 (226)
                      -...+|||||.|++|+.+++.|+.-|.+|.++ +|+....         ....++++++..+|++.+.-
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iav   76 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAV   76 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEe
Confidence            34579999999999999999999999999886 5553221         23567889999999998863

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.32  E-value=0.00076  Score=57.02  Aligned_cols=37  Identities=38%  Similarity=0.525  Sum_probs=34.1

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.++.|+||.|-|||++|+.+|+.|..+|++|++++-
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            4689999999999999999999999999999997755

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.30  E-value=0.00019  Score=64.98  Aligned_cols=59  Identities=22%  Similarity=0.308  Sum_probs=48.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+|+|.|.||+.+++.|+.+| .+|+.++|+....           ....++.+.+..+|++...
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS  247 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC
Confidence            588999999999999999999999999 6899999976432           1123566778899998887

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.29  E-value=0.00049  Score=59.65  Aligned_cols=59  Identities=22%  Similarity=0.375  Sum_probs=45.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-----C-----cccChhhhcccCcEEEEecc
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-----S-----QVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-----~-----~~~~l~ell~~sD~v~l~~~  210 (226)
                      ..++|+|||+|.||..+|+.++..|.  +|++|+|++...     .     ...++++.+..+|++.+.-.
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC
Confidence            34789999999999999999987774  899999975421     0     12356677889999988843

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.26  E-value=0.00028  Score=61.03  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=34.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|+.+||+|+|.+|.--.+.+|||||+|+++|++.++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence            7999999999999999999999999999999998643

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.23  E-value=0.00041  Score=59.92  Aligned_cols=54  Identities=19%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|..+|+.|...|.+|.+|+++++..       ....+..++...+|++.+.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~   62 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIM   62 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence            69999999999999999999999999999875421       1244566788899998877

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.23  E-value=0.00028  Score=61.00  Aligned_cols=56  Identities=14%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhh---hcccCcEEEEecc
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSS---GWHCKQVISIFNE  210 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~e---ll~~sD~v~l~~~  210 (226)
                      +|||||+|.+|..+|+.|...|.+|.+|+|++...        ....++++   .+..+|++.+.-.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp   68 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVP   68 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcC
Confidence            79999999999999999999999999999985432        11233333   4456788887733

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.0012  Score=56.89  Aligned_cols=67  Identities=12%  Similarity=0.112  Sum_probs=55.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|+|.|. .|+.+|..|...|++|+.+.+.      ..+|.+.++.+|+++.. ...+++..++++
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk  222 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------TQNLPELVKQADIIVGAVGKPELIKKDWIK  222 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------chhHHHHhccCCEEEEccCCCCcCCHHHcC
Confidence            5689999999999998 9999999999999999988873      33688888999999988 345566655554

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.17  E-value=0.0012  Score=54.73  Aligned_cols=37  Identities=41%  Similarity=0.601  Sum_probs=33.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .++.|+||.|.|||++|+.+|+.|...|.+|++++-+
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~   55 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP   55 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            5789999999999999999999999999987776543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.16  E-value=0.00067  Score=58.27  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+||+||+|..|..+|++|..-|..|.+|+|++...         ....+..|+.+.+|+|...
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitm   64 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITM   64 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEe
Confidence            479999999999999999999999999999997762         1244556899999998876

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.15  E-value=0.00079  Score=57.81  Aligned_cols=60  Identities=30%  Similarity=0.384  Sum_probs=51.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .-|.||||+|||||+-|.+=|.-|+--|.+|++=-|....+        .+..+.+|+.+.+|++.++
T Consensus        14 ~~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L   81 (338)
T COG0059          14 DLLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMIL   81 (338)
T ss_pred             hHhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEe
Confidence            47999999999999999999999999999977655544443        4567789999999999998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.15  E-value=0.00046  Score=59.50  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|||||.|.+|..+|..+...|++|+.||++..
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999999753

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.14  E-value=0.0011  Score=56.96  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=56.4

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||+++|||. |-+|+.+|.+|..-|++|+.|...      ..++.+..++||+++.. ....++..++++.
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~  222 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------TRNLAEVARKADILVVAIGRGHFVTKEFVKE  222 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------CCCHHHHHhhCCEEEEecCccccCCHHHccC
Confidence            56899999999999 999999999999999999998322      23788999999999887 6677777666543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.11  E-value=0.00045  Score=60.45  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|||||.|.||..+|..+...|++|+.||+++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999999754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.10  E-value=0.00043  Score=59.51  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+...|.+|+.||+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            5899999999999999999988999999999743

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.00094  Score=58.82  Aligned_cols=56  Identities=25%  Similarity=0.177  Sum_probs=47.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCC-------------cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~-------------~~~~l~ell~~sD~v~l~  208 (226)
                      ++||||||=|..|+-++.-++.+|.+|+..++.+....             +...+.++...||+++.=
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~E   69 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYE   69 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEe
Confidence            47999999999999999999999999999999876651             134688899999999864

>PLN02858 fructose-bisphosphate aldolase

Probab=97.09  E-value=0.00046  Score=70.86  Aligned_cols=56  Identities=14%  Similarity=0.122  Sum_probs=48.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .++||+||+|.+|..+|+.|...|++|++|||++...        ....+..++...+|++.+.
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~  387 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIM  387 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence            4899999999999999999999999999999986432        1245677899999999987

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.08  E-value=0.00058  Score=57.80  Aligned_cols=54  Identities=20%  Similarity=0.253  Sum_probs=41.7

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC----EEEEE-cCCCCCC-------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASH-------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~----~V~~~-~r~~~~~-------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|.++|+.|..-|.    +|++| +|++...       . ...+..++...+|++.+.
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~   68 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILA   68 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEE
Confidence            69999999999999999987777    88888 7764331       1 133556677888988776

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.07  E-value=0.00077  Score=55.58  Aligned_cols=54  Identities=20%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHc--cCCCE-EEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLR--PFGVK-IIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~--afG~~-V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.||+.+.+.++  ..+++ |..||++..+.         ....++|+++++.|+++-.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeee
Confidence            7999999999999999998  35665 77788875543         1246699999999988765

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.06  E-value=0.0015  Score=56.02  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|+|.|. +|+-+|.+|...|++|+.+.++.      .+|.+..+++|+++.. ....++..++++.
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvi~avG~p~~v~~~~vk~  223 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------KNLRHHVRNADLLVVAVGKPGFIPGEWIKP  223 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------CCHHHHHhhCCEEEEcCCCcccccHHHcCC
Confidence            4589999999999999 99999999999999999987652      3789999999999888 5666777766653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.02  E-value=0.0027  Score=49.99  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+.++.+|..-|+.|.....+.      .++++.+++||+++.. ....+|-.+.++.
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~  100 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------KNLQEITRRADIVVSAVGKPNLIKADWIKP  100 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEEE-SSSTT-B-GGGS-T
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------CcccceeeeccEEeeeeccccccccccccC
Confidence            4579999999999996 99999999999999999876653      3789999999999988 6677777666543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.01  E-value=0.00077  Score=57.11  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=42.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC---CEEEEEcCCCCCC------C---cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASH------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG---~~V~~~~r~~~~~------~---~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|||+|.||+.+|+.+..-|   .+|.+++|+....      .   -..+.++++..+|++.+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~   69 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLA   69 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEE
Confidence            47999999999999999998777   6899999975321      1   123456677888988776

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.00  E-value=0.00061  Score=58.38  Aligned_cols=40  Identities=28%  Similarity=0.397  Sum_probs=36.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~  188 (226)
                      ..+.++++.|+|.|.+|++++..|..+| .+|+.++|+...
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~  159 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVER  159 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            4688999999999999999999999999 689999998543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.00  E-value=0.00078  Score=58.92  Aligned_cols=55  Identities=18%  Similarity=0.083  Sum_probs=43.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|||.|.+|..+|..|..-|.+|..|+|++...                      ....++++.+..+|++.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            479999999999999999998999999999974321                      0123566777888888777

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.97  E-value=0.00062  Score=59.31  Aligned_cols=61  Identities=23%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC------C-----cccChhhhcccCcEEEEecc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH------S-----QVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~------~-----~~~~l~ell~~sD~v~l~~~  210 (226)
                      .+.+++|+|+|.|.||+.+++.++..| .+|+.++|++...      .     ...++.+.+..+|++.....
T Consensus       175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~  247 (311)
T cd05213         175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATG  247 (311)
T ss_pred             CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCC
Confidence            378999999999999999999999877 4799999975431      1     12345677788898888733

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.96  E-value=0.0012  Score=56.47  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=43.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~  208 (226)
                      ..+|||||+|++|+++|+.+..-|    .+|++++|+....       .   ...+..++...+|++.+.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVila   72 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLA   72 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEE
Confidence            468999999999999999998766    6899999865321       1   133455677889988877

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.96  E-value=0.00099  Score=56.86  Aligned_cols=53  Identities=19%  Similarity=0.160  Sum_probs=40.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|||+|.+|+.+|+.|+.-|  .+|++|+|++...        . ...+.+++. .+|++.+.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEe
Confidence            7999999999999999998666  4899999975321        0 123455654 49998887

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.96  E-value=0.00076  Score=61.25  Aligned_cols=59  Identities=25%  Similarity=0.347  Sum_probs=47.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C-----cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S-----QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~-----~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+|+|.|.||+.+++.|+..|+ +|+.++|++...      .     ...++.+.+..+|+++..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISS  249 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEEC
Confidence            4789999999999999999999999998 799999975432      1     123345667888888877

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.95  E-value=0.0017  Score=45.47  Aligned_cols=36  Identities=42%  Similarity=0.642  Sum_probs=32.9

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      ..+.+++++|+|.|.+|+.++..+..+ +.+|..|+|
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            568899999999999999999999988 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.94  E-value=0.0014  Score=63.55  Aligned_cols=55  Identities=27%  Similarity=0.313  Sum_probs=44.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~  208 (226)
                      ++|||||+|.+|.++|+.++..|  .+|++|+++....       .   ...++++.+..+|++.+.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEEC
Confidence            78999999999999999999888  5899999975431       1   234567778899999887

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0014  Score=56.88  Aligned_cols=33  Identities=24%  Similarity=0.182  Sum_probs=31.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ++|+|||.|.+|..+|..+...|.+|++||+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            479999999999999999999999999999975

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.93  E-value=0.0025  Score=54.75  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|+|.|. +|+-+|.+|...|++|..+....      .+|.+..+++|+++.. ....+|..++++.
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~  228 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------DDLKKYTLDADILVVATGVKHLIKADMVKE  228 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------CCHHHHHhhCCEEEEccCCccccCHHHcCC
Confidence            4689999999999999 99999999999999999887542      3789999999999875 5666666665543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.90  E-value=0.0015  Score=59.36  Aligned_cols=38  Identities=29%  Similarity=0.489  Sum_probs=34.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.+|.|+||.|.|+|++|+..|+.|..+|++|++++.+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~  260 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS  260 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45799999999999999999999999999999997663

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.90  E-value=0.0011  Score=59.96  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++|+|||+|.+|..+|..|+.-|.+|++||+++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~   38 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHA   38 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence            68999999999999999999999999999997543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.89  E-value=0.0014  Score=59.83  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=44.5

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC------Cc---ccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH------SQ---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~---~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+| +|.||+.+|+.|+..|.+|++|+|++...      .+   ..++++.+..+|++.+.
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIla   65 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIIS   65 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEe
Confidence            799997 99999999999999999999999975441      11   23566788899999887

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.89  E-value=0.00086  Score=48.77  Aligned_cols=60  Identities=17%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC--CC---CcccChhhhcccCcEEEEec
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--SH---SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~--~~---~~~~~l~ell~~sD~v~l~~  209 (226)
                      .++|++|.|+|.|.+|.+-++.|...|++|+.+++...  +.   .....+++.+..+|++....
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at   68 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAAT   68 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-S
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecC
Confidence            58899999999999999999999999999999999841  11   12334556677888777663

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.87  E-value=0.0016  Score=59.38  Aligned_cols=37  Identities=24%  Similarity=0.562  Sum_probs=34.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.++.|+||.|.|||++|+.+|+.|..+|++|++++-
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            3579999999999999999999999999999999833

>PLN02477 glutamate dehydrogenase

Probab=96.86  E-value=0.003  Score=57.06  Aligned_cols=38  Identities=37%  Similarity=0.585  Sum_probs=34.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.++.|+||.|.|||++|+.+|+.|...|++|++++-+
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~  238 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI  238 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            45899999999999999999999999999999976543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.86  E-value=0.0011  Score=56.73  Aligned_cols=55  Identities=13%  Similarity=0.231  Sum_probs=41.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC----EEEEEcCCCCCC------C---cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASH------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~----~V~~~~r~~~~~------~---~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+|++|+++++.+..-|.    +|++++|+....      .   ...+..+++..+|++.+.
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLa   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILS   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEE
Confidence            579999999999999999976553    699999865431      1   123455677888988776

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.83  E-value=0.0021  Score=57.25  Aligned_cols=55  Identities=29%  Similarity=0.273  Sum_probs=44.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------C---cccChhhhcccCcEEEE
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------S---QVSCQSSGWHCKQVISI  207 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~---~~~~l~ell~~sD~v~l  207 (226)
                      .+||||||-|.+|+.++..++.+|++|+.+++.+...          .   +.+.+.++...+|+++.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            4799999999999999999999999999999976543          1   12346678888998764

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.83  E-value=0.002  Score=53.05  Aligned_cols=81  Identities=16%  Similarity=0.110  Sum_probs=56.3

Q ss_pred             CchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH--HccCCCEEEEE-cCCCCC
Q 027226          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIAT-KRSWAS  188 (226)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~--l~afG~~V~~~-~r~~~~  188 (226)
                      ++.+.++|.+..++...|++..         |.       ..++++|+|.|.+|+.+++.  ....|+++.++ |+.+..
T Consensus        59 ~G~~~~gy~v~~l~~~~~~~l~---------~~-------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~  122 (213)
T PRK05472         59 FGKRGVGYNVEELLEFIEKILG---------LD-------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEK  122 (213)
T ss_pred             cCCCCCCeeHHHHHHHHHHHhC---------CC-------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhh
Confidence            3455677999999988888762         11       34689999999999999986  34789998874 554322


Q ss_pred             C---------CcccChhhhccc--CcEEEEe
Q 027226          189 H---------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       189 ~---------~~~~~l~ell~~--sD~v~l~  208 (226)
                      .         ....++++++..  .|.+.+.
T Consensus       123 ~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa  153 (213)
T PRK05472        123 IGTKIGGIPVYHIDELEEVVKENDIEIGILT  153 (213)
T ss_pred             cCCEeCCeEEcCHHHHHHHHHHCCCCEEEEe
Confidence            1         123456777754  7777766

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.81  E-value=0.0016  Score=60.42  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=31.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5899999999999999999988999999999754

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.80  E-value=0.0016  Score=56.39  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=30.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ++|+|||.|.+|..+|..+..-|.+|+.|+++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999999865

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.76  E-value=0.0024  Score=56.24  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------CcccChhhhcccCcEEEEecc--CCc
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSWASH---------SQVSCQSSGWHCKQVISIFNE--KGF  213 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~~~--~d~  213 (226)
                      +..+++++|.|+|. |.||+.+++.|. ..|. +++.++|+....         ....++++.+..+|++.....  ..+
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~  229 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV  229 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC
Confidence            45799999999998 899999999996 5675 899999864332         123356788999998876632  232


Q ss_pred             -cccccccccc
Q 027226          214 -SSGEYCSRRS  223 (226)
Q Consensus       214 -i~~~~~~~~~  223 (226)
                       ++.+...+|.
T Consensus       230 ~I~~~~l~~~~  240 (340)
T PRK14982        230 EIDPETLKKPC  240 (340)
T ss_pred             cCCHHHhCCCe
Confidence             5555555443

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.76  E-value=0.003  Score=55.22  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=42.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+|||+|+|+||+.+++.+... ++++.+ ++++....       +...+.++++...|++.+.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIc   67 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILC   67 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEc
Confidence            5899999999999999999765 899887 57764111       2334566777889999887

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.76  E-value=0.0025  Score=54.73  Aligned_cols=56  Identities=25%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEE--EEEcCCCCCC-------C-c---ccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWASH-------S-Q---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V--~~~~r~~~~~-------~-~---~~~l~ell~~sD~v~l~  208 (226)
                      -.+|+|+|+|.||+.+|+.++.-|..|  +++|++....       . .   ...+.+....+|++++-
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva   71 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA   71 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe
Confidence            478999999999999999999888876  5555543221       0 0   11225677788998887

>PLN02858 fructose-bisphosphate aldolase

Probab=96.73  E-value=0.0015  Score=67.15  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      +.++||+||+|.+|..+|+.|..-|.+|.+|||++...        ....+..++...+|++.+.
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEE
Confidence            46789999999999999999999999999999986542        2356778888889887776

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.72  E-value=0.0011  Score=57.09  Aligned_cols=51  Identities=14%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      |||+|.+|..+|+.|...|.+|++|+|++...        ....+..+++..+|++.+.
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~   59 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITM   59 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence            58999999999999999999999999975432        1245678899999998888

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN00203 glutamyl-tRNA reductase

Probab=96.71  E-value=0.0016  Score=60.64  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C--------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S--------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~--------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.+++|+|||.|.+|+.+++.|...|+ +|+.++|+....      .        ...++.+.+..+|+|...
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA  336 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS  336 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence            4889999999999999999999999998 699999975432      1        123455678889998776

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.70  E-value=0.0036  Score=53.61  Aligned_cols=68  Identities=12%  Similarity=0.186  Sum_probs=57.6

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.|++|.|+|.+ ..|+.+|.++..+|++|....++.      .+|.+.+++||+++.. ....++..+..+.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~  216 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------ENLKAELRQADILVSAAGKAGFITPDMVKP  216 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------hHHHHHHhhCCEEEECCCcccccCHHHcCC
Confidence            458999999999999 999999999999999998877642      3789999999999988 5567777776643

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.69  E-value=0.0026  Score=52.05  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.+.||+|.|||.|.+|...++.|...|++|+.+++...
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~   44 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT   44 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            478999999999999999999999999999999988653

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.69  E-value=0.0019  Score=59.39  Aligned_cols=55  Identities=15%  Similarity=0.226  Sum_probs=43.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcc---cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWH---CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~---~sD~v~l~  208 (226)
                      .+|||||+|.+|+.+|+.|..-|.+|.+|+|++...              ....++++++.   .+|++.+.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence            479999999999999999999999999999976541              12456777775   47855555

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.67  E-value=0.0048  Score=53.02  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||+|.|||-| -+|+.+|.+|..-|++|......      ..+|.+.+++||+++.. ...+++..+.++.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~------t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~  221 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL------TKDLSFYTQNADIVCVGVGKPDLIKASMVKK  221 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC------cHHHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence            468999999999999 99999999999999999987443      23688999999999888 7777777666643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.67  E-value=0.0088  Score=46.06  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=56.1

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|+|-+ .+|+.+|.+|..-|++|...+++.      .++++..++||+++.. ....++..++++.
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------~~l~~~v~~ADIVvsAtg~~~~i~~~~ikp   92 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------IQLQSKVHDADVVVVGSPKPEKVPTEWIKP   92 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------cCHHHHHhhCCEEEEecCCCCccCHHHcCC
Confidence            568999999999987 579999999999999999997653      2789999999999988 4446676666553

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.66  E-value=0.0023  Score=54.46  Aligned_cols=55  Identities=11%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccC--CCEEE-EEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+|.||+.+++.+...  ++++. .+|+++...         ..+.++++++...|++.+.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEc
Confidence            3799999999999999988754  57744 577764321         1246788888889999886

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.65  E-value=0.037  Score=51.39  Aligned_cols=126  Identities=10%  Similarity=0.063  Sum_probs=75.2

Q ss_pred             CceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCC--C-----CCchhHHHHHHHHH-H
Q 027226           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLM-L  125 (226)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~--~-----~~~~~vAE~~l~~~-L  125 (226)
                      ++|+++... .++.+.++.+ ++--+|....-.-|.=.++.+.+++|++....-.-  +     .-=.+||+.+=+.. +
T Consensus        64 ~adiIlkV~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi  142 (511)
T TIGR00561        64 QSDIILKVN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAII  142 (511)
T ss_pred             cCCEEEEeC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHH
Confidence            578887532 4566667776 56667777666555545667788898876543110  0     00123444432211 1


Q ss_pred             HHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+..+.++.    .|.-.  ......+.++.|+|.|.+|...+..++.+|++|++++++..
T Consensus       143 ~Aa~~lgr~~----~g~~t--aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       143 EAAHEFGRFF----TGQIT--AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             HHHHHhhhhc----CCcee--cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            1112221111    11111  11245579999999999999999999999999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.63  E-value=0.0032  Score=49.41  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .-.|.|++|.|+|-|.+|.+.++.|...|++|..+++...
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~   47 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC   47 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC
Confidence            3579999999999999999999999999999999976543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.62  E-value=0.024  Score=52.66  Aligned_cols=124  Identities=11%  Similarity=0.065  Sum_probs=75.2

Q ss_pred             CceEEEEcCCCCCHHHHhcCC-CceEEEecCccCCccchhHHHhCCcEEEecCCCC--C-----CCchhHHHHHHHHHHH
Q 027226           55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLMLG  126 (226)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~--~-----~~~~~vAE~~l~~~L~  126 (226)
                      ++|+++.-. .++.+.++.++ +-.+|....-..+.=.++.+.+++|.+....-..  +     .-=.++|+.+=     
T Consensus        65 ~~diilkV~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG-----  138 (509)
T PRK09424         65 QSDIILKVN-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG-----  138 (509)
T ss_pred             cCCEEEEeC-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence            588888533 45666677774 5666676666556545667788898876532210  0     00123333332     


Q ss_pred             HhhcHHHHHHHHHhCCCCCC---CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                       +|-+....+..  ++....   ......+.+|.|+|.|.||...+..++.+|++|+++|+++.
T Consensus       139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence             22222111111  111111   11245699999999999999999999999999999999754

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.61  E-value=0.0024  Score=54.65  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC-------C---c-ccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH-------S---Q-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~-------~---~-~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|||+|++|+++++.+..-|    .+|++|+|+....       .   . ..+..+++..+|++.+.
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVila   71 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFIC   71 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEe
Confidence            37999999999999999998777    6899999864221       1   1 24556678889988877

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.61  E-value=0.0048  Score=52.31  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC--CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH--SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~--~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+|||||+|.+|.++++.+..-|    -+|++++|+....  ....+..++...+|++.+.
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vila   64 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLA   64 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEE
Confidence            358999999999999999998554    2499999865432  1233455667889988877

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.0029  Score=57.94  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.+++|+|+|+|..|+++|+.|+..|++|.++|+...
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            456689999999999999999999999999999998653

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.59  E-value=0.0017  Score=54.91  Aligned_cols=55  Identities=15%  Similarity=0.071  Sum_probs=41.0

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCE---EEEEcCCCCCC------C----cccChhhhcccCcEEEEec
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASH------S----QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~---V~~~~r~~~~~------~----~~~~l~ell~~sD~v~l~~  209 (226)
                      +|||||+|++|+.+++.+..-|..   |.+++|+....      .    ...+.++++..+|++.+.-
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEe
Confidence            699999999999999999866643   57888864321      1    1245667788899988873

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.59  E-value=0.0038  Score=50.35  Aligned_cols=63  Identities=24%  Similarity=0.330  Sum_probs=47.0

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC--------------------CcccChhhhcccCcEEE
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH--------------------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~  206 (226)
                      +..++++++.|+|- |.+|+.+++.|...|.+|+.++|+....                    .+..++.+.+..+|++.
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            35688999999995 9999999999999999999999874321                    01122346778888776


Q ss_pred             Eecc
Q 027226          207 IFNE  210 (226)
Q Consensus       207 l~~~  210 (226)
                      ....
T Consensus       103 ~at~  106 (194)
T cd01078         103 AAGA  106 (194)
T ss_pred             ECCC
Confidence            6533

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.57  E-value=0.003  Score=57.05  Aligned_cols=33  Identities=21%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +|||||+|.+|..+|..|..-|.+|++||++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999999754

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.56  E-value=0.0031  Score=51.99  Aligned_cols=54  Identities=26%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+||| .|++|+.+|+.|..-|.+|..++|+....                   ....+..+.+..+|++.+.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVila   75 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILA   75 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence            699997 99999999999998899999999875321                   0012345677888988877

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.55  E-value=0.0068  Score=55.21  Aligned_cols=35  Identities=37%  Similarity=0.613  Sum_probs=32.7

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEE
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~  182 (226)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|+++
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav  257 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTI  257 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence            45799999999999999999999999999999993

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.52  E-value=0.0022  Score=59.29  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=43.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---C------------cccChhhhccc---CcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---S------------QVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~------------~~~~l~ell~~---sD~v~l~  208 (226)
                      .+||+||+|..|+.+|+.|..-|.+|.+|||++...   .            ...+++++...   +|++.+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence            369999999999999999999999999999975432   0            23456676665   8887766

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.52  E-value=0.0039  Score=54.12  Aligned_cols=55  Identities=18%  Similarity=0.160  Sum_probs=42.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----C-----------------cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----S-----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~-----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|.|.+|..+|..|..-|.+|..|+|++...     .                 ...+.++.+..+|++.+.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            379999999999999999998899999999964221     0                 123455677788887776

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.50  E-value=0.0031  Score=57.12  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C------cccChhhhcccCcEEEEec
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S------QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~------~~~~l~ell~~sD~v~l~~  209 (226)
                      ..+.|+++.|+|.|.+|+.+|+.|...|. +|+.++|+....      .      ..+++.+.+..+|+++...
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT  250 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAV  250 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECc
Confidence            46889999999999999999999999996 699999985431      1      1244567788899988873

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.50  E-value=0.00088  Score=54.74  Aligned_cols=44  Identities=30%  Similarity=0.459  Sum_probs=38.9

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus        10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            465555678999999999999999999999999998 79999986

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.49  E-value=0.004  Score=57.45  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +..+.+++++|+|.|.+|++++..+...|++|..++|+..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~  366 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKA  366 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4567899999999999999999999999999999998643

>PRK07680 late competence protein ComER; Validated

Probab=96.48  E-value=0.0025  Score=54.27  Aligned_cols=54  Identities=20%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC----EEEEEcCCCCCC---------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASH---------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~----~V~~~~r~~~~~---------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+++++.|..-|.    +|.+++|+....         . ...+..+++..+|++.+.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVila   69 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFIC   69 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEe
Confidence            69999999999999999987773    799999975321         1 123556678889988777

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.47  E-value=0.0056  Score=51.98  Aligned_cols=55  Identities=15%  Similarity=0.123  Sum_probs=38.1

Q ss_pred             CEEEEEcCChHHHHHHHHHcc---CCCEEEEEcCCCC-CC-------CcccChhhh-cccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRP---FGVKIIATKRSWA-SH-------SQVSCQSSG-WHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a---fG~~V~~~~r~~~-~~-------~~~~~l~el-l~~sD~v~l~  208 (226)
                      .+|||||+|.||+.+++.+..   .++++.++.++.. ..       .-..+++++ ....|+|+=.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~   69 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEA   69 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEEC
Confidence            689999999999999998863   3466655433322 11       125568886 4778888755

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.42  E-value=0.0061  Score=52.35  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5899999999999999999988999999998753

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.42  E-value=0.0078  Score=52.95  Aligned_cols=58  Identities=17%  Similarity=0.145  Sum_probs=45.6

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCCCcccChh----hhcccCcEEEE
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS----SGWHCKQVISI  207 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~~~~~l~----ell~~sD~v~l  207 (226)
                      ..+.+++|.|||.|.+|+.+|+.|..-|. +|+..+|+... .++.++.    +++..+|+|..
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~~~~~~~~~~~DvVIs  232 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVVREELSFQDPYDVIFF  232 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhhhhhhhcccCCCEEEE
Confidence            46899999999999999999999999996 69999998653 2233332    45667788776

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.41  E-value=0.0025  Score=49.90  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=44.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------------CcccChhhhcccCcEEEEeccCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------------SQVSCQSSGWHCKQVISIFNEKG  212 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------------~~~~~l~ell~~sD~v~l~~~~d  212 (226)
                      +|+|+|.|+.|.++|..|..-|-+|..|+|.....                      .-..++++.++.+|++.+.-.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999974210                      01456888999999988874433

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.41  E-value=0.0014  Score=52.85  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=27.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+|+|+|+|.+|-.+|..+...|.+|+++|....
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            4799999999999999999999999999998643

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=96.39  E-value=0.013  Score=47.51  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             CCCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC-------------CCC--CcccChhhhcccCcEEEEe-c
Q 027226          147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW-------------ASH--SQVSCQSSGWHCKQVISIF-N  209 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~-------------~~~--~~~~~l~ell~~sD~v~l~-~  209 (226)
                      .+.++.||++.|||-+. +|+-+|.+|..-|++|+.++.+.             +..  .....+.+.+++||+++.. .
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            36789999999999996 59999999999999999985211             110  0011278999999999887 7


Q ss_pred             cCCc-ccccccc
Q 027226          210 EKGF-SSGEYCS  220 (226)
Q Consensus       210 ~~d~-i~~~~~~  220 (226)
                      ..+| |..+.++
T Consensus       136 ~~~~~i~~d~ik  147 (197)
T cd01079         136 SPNYKVPTELLK  147 (197)
T ss_pred             CCCCccCHHHcC
Confidence            7788 7666654

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.39  E-value=0.0045  Score=49.64  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|+|||.|.+|+.+|..+...|++|..||+++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            6999999999999999999999999999997543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.36  E-value=0.0055  Score=53.84  Aligned_cols=37  Identities=30%  Similarity=0.436  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|++|+|+|+|.+|....+.++++|++|++++++.++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            3899999999999999999999999999999998764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.36  E-value=0.0034  Score=52.85  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             HHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      +|.++..-..|.......|..++|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        12 rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         12 RYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            444444334565545578999999999999999999999999998 68888774

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.32  E-value=0.0056  Score=52.68  Aligned_cols=39  Identities=26%  Similarity=0.278  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .+.+++|.|+|.|..|++++..|...|+ +|+.++|+...
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~k  163 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPAR  163 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence            4678999999999999999999999998 79999997543

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.32  E-value=0.0048  Score=53.05  Aligned_cols=60  Identities=17%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ...+.++||.||+|..|..++.-|-.-|.+|++|||+....        .-..+-.|+.+.||++...
T Consensus        31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitm   98 (327)
T KOG0409|consen   31 ITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITM   98 (327)
T ss_pred             CCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEE
Confidence            34568999999999999999999999999999999986553        1134556888999988765

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.30  E-value=0.0098  Score=54.25  Aligned_cols=39  Identities=28%  Similarity=0.506  Sum_probs=35.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ...+++|.|+|+|.-|.++|+.|+..|++|+++|.++.+
T Consensus         4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            344999999999999999999999999999999976655

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.26  E-value=0.0067  Score=50.58  Aligned_cols=57  Identities=14%  Similarity=0.160  Sum_probs=41.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC---CE-EEEEcCCC-CCC--------C-cccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSW-ASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG---~~-V~~~~r~~-~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      ...+|||||.|++|+++++.+..-|   .+ |+.++|+. +..        . ...+.++++..+|++.+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViia   73 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLA   73 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEe
Confidence            3578999999999999999886544   44 77787642 111        1 134567788899998887

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.25  E-value=0.0044  Score=51.49  Aligned_cols=62  Identities=13%  Similarity=0.197  Sum_probs=46.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------CcccChhhh-cccCcEEEEeccCCccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------------SQVSCQSSG-WHCKQVISIFNEKGFSS  215 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------~~~~~l~el-l~~sD~v~l~~~~d~i~  215 (226)
                      +++.|+|.|+.|..+|+.|...|.+|+..++.....                 ....-|.++ +..+|+++.....|.++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N   80 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN   80 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence            578999999999999999999999999999864331                 122334444 67778877775555544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.25  E-value=0.0015  Score=54.28  Aligned_cols=44  Identities=27%  Similarity=0.410  Sum_probs=37.4

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......|.+++|.|+|.|.+|.++|+.|...|+ +++.+|..
T Consensus        10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            465544578999999999999999999999999999 68888764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=96.24  E-value=0.0057  Score=53.77  Aligned_cols=53  Identities=13%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             EEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC-------Cc---------------------ccChhhhcccCcEEE
Q 027226          156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH-------SQ---------------------VSCQSSGWHCKQVIS  206 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-------~~---------------------~~~l~ell~~sD~v~  206 (226)
                      |||+|||+||+.+++.+. .=+|+|.++.....+.       .+                     ..++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            699999999999999876 3468888765421110       00                     224778888888888


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      .+
T Consensus        81 e~   82 (333)
T TIGR01546        81 DA   82 (333)
T ss_pred             EC
Confidence            77

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.20  E-value=0.0083  Score=54.66  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=34.5

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.++.|+||.|=|+|++|+.+|++|..+|++|++++-+
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~  269 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS  269 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            46799999999999999999999999999999976654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.15  E-value=0.016  Score=49.74  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=56.6

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-| -+|+-+|.+|..-|+.|......      ..+|.+..++||+++.. ....|+..++++.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~  221 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------TKDLKAHTKKADIVIVGVGKPNLITEDMVKE  221 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------CcCHHHHHhhCCEEEEecCcccccCHHHcCC
Confidence            458999999999999 88999999999889999876433      23688999999999888 7777777766654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.14  E-value=0.0071  Score=52.01  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+...|.+|+.||+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999999753

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.11  E-value=0.0063  Score=54.85  Aligned_cols=60  Identities=25%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..|+++++.|||.|.+|+-+|+.|..-|. +|+..+|+....           ....++.+.+.++|++..-
T Consensus       174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss  245 (414)
T COG0373         174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS  245 (414)
T ss_pred             cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe
Confidence            35999999999999999999999999995 788888876543           1245567788999998876

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.10  E-value=0.013  Score=48.06  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.+.|++|.|||-|.+|.+-++.|..+|++|+.+++...+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~   44 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES   44 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence            4689999999999999999999999999999999987653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.05  E-value=0.0049  Score=54.36  Aligned_cols=45  Identities=27%  Similarity=0.459  Sum_probs=38.6

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|+..
T Consensus        13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            355445578999999999999999999999999998 788898864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.05  E-value=0.0038  Score=50.86  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=38.1

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.......|.+++|.|+|.|.+|.++|+.|...|+ ++..+|..
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            66555678999999999999999999999999999 58888875

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.01  E-value=0.02  Score=49.12  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+.+....      .+|.+..++||+++.. ...+|+..++++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~  221 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------KDLPQVAKEADILVVATGLAKFVKKDYIKP  221 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence            5689999999999986 59999999999999998765432      2689999999999888 7778887777654

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.013  Score=52.50  Aligned_cols=39  Identities=36%  Similarity=0.605  Sum_probs=35.9

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.|+||.|=|+|++|+..|+.|...|++|+++|-+..
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            449999999999999999999999999999999988755

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.016  Score=53.07  Aligned_cols=34  Identities=15%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      -.||+|+|+|+|.-|+++|+.|+. |++|+.+|..
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            358999999999999999999996 9999999954

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.92  E-value=0.0093  Score=53.84  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEEEE-cCC
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~-~r~  185 (226)
                      .+|||.|||+||+.++|.+.. ++++|++. |+.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~  119 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF  119 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence            599999999999999999874 89999984 444

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.011  Score=53.52  Aligned_cols=57  Identities=19%  Similarity=0.204  Sum_probs=41.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCCc--------ccChhhhcccCcEEEEec
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ--------VSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~--------~~~l~ell~~sD~v~l~~  209 (226)
                      .++|.|+|+|.+|..+|+.|+..|.+|.++|++......        ....+.+...+|++++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECC
Confidence            478999999999999999999999999999986543210        011122345678877773

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.90  E-value=0.016  Score=43.55  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=39.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHcc-CCCEEE-EEcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSWASH----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~a-fG~~V~-~~~r~~~~~----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+|+ |++|+.+++.+.. =|+++. ++++...+.                .-..++++++..+|++.-.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence            6999999 9999999999986 788844 456655111                1146788899889988765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=95.89  E-value=0.064  Score=46.40  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             HHhcC-CCceEEEecCccCCccchhHHHhCCc-EEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCC
Q 027226           70 CISRA-NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT  147 (226)
Q Consensus        70 ~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi-~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~  147 (226)
                      .++.+ ++.=+|-....|+-++.   +...++ +|.|+.+-+..|..+    ++.=++...+.                .
T Consensus        97 tl~ayg~D~iViRH~~egaa~~~---a~~~~~~pvINaGDG~~qHPTQ----~LLDl~TI~~~----------------~  153 (316)
T COG0540          97 TLSAYGVDAIVIRHPEEGAARLL---AEFSGVNPVINAGDGSHQHPTQ----ALLDLYTIREE----------------F  153 (316)
T ss_pred             HHHhhCCCEEEEeCccccHHHHH---HHhcCCCceEECCCCCCCCccH----HHHHHHHHHHH----------------h
Confidence            44555 56666666666665543   233356 799998765433322    22222222221                1


Q ss_pred             CCccCCCEEEEEc---CChHHHHHHHHHccCCCEEEEEcCCC-CC--C-----------CcccC-hhhhcccCcEEEEe-
Q 027226          148 GETLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSW-AS--H-----------SQVSC-QSSGWHCKQVISIF-  208 (226)
Q Consensus       148 ~~~l~gktvgIvG---~G~IG~~vA~~l~afG~~V~~~~r~~-~~--~-----------~~~~~-l~ell~~sD~v~l~-  208 (226)
                      | .+.|++|+|+|   +|+.-+..++.|+.||++|..++|.. .+  .           ....+ .+|.+.++|++-++ 
T Consensus       154 G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lR  232 (316)
T COG0540         154 G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLR  232 (316)
T ss_pred             C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEeeh
Confidence            2 39999999999   89999999999999999999999842 11  1           01233 44599999999998 


Q ss_pred             -ccCCcccccccc
Q 027226          209 -NEKGFSSGEYCS  220 (226)
Q Consensus       209 -~~~d~i~~~~~~  220 (226)
                       ++..+-+..++|
T Consensus       233 vQ~ER~~~~~~~s  245 (316)
T COG0540         233 VQKERFNDPEEYS  245 (316)
T ss_pred             hhHhhcCCccchH
Confidence             666676666666

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=95.89  E-value=0.026  Score=48.20  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.+++||++.|||-++| |+-+|.+|..-+++|.....+.      .++.+..++||+++.. ...+|+..++.+-
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~  220 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------KDLASITKNADIVVVAVGKPHFIKADMVKP  220 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------CCHHHHhhhCCEEEEecCCccccccccccC
Confidence            45899999999999986 9999999999999999987653      3789999999999887 7777777666554

>PRK08328 hypothetical protein; Provisional

Probab=95.88  E-value=0.0083  Score=50.04  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=37.2

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.......|.+++|.|+|.|.+|.++|+.|...|. +++.+|..
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            65545678999999999999999999999999998 58888764

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.88  E-value=0.026  Score=48.72  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=57.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+....      .+|.+..++||+++.. ....|+..++++.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~  224 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------RDLADYCSKADILVAAVGIPNFVKYSWIKK  224 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4689999999999986 69999999999999999876542      2689999999999888 7778887777664

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=95.87  E-value=0.0072  Score=52.89  Aligned_cols=56  Identities=27%  Similarity=0.294  Sum_probs=42.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C---cccChhhhc-ccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S---QVSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~---~~~~l~ell-~~sD~v~l~  208 (226)
                      -++|||||||+.|+-.|+.+..-|-.|+..||+.-++    +   ....+.+++ +.+|++-+.
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlc  115 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLC  115 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEE
Confidence            3789999999999999999999999999999975332    1   233444444 566766555

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.86  E-value=0.0051  Score=52.85  Aligned_cols=38  Identities=24%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .+.++++.|+|.|..|++++..|...|+ +|+.++|+..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~  160 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPD  160 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            4678999999999999999999999998 6999999754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.013  Score=53.25  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.||++.|+|.|.+|.++|+.|+..|++|+++|+..
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            678999999999999999999999999999999764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.84  E-value=0.012  Score=50.68  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++..
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            6899999999999999999999999999999743

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.83  E-value=0.026  Score=48.47  Aligned_cols=68  Identities=18%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+.      .+|.+..++||+++.. ...+|+..++++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~  221 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------KDLSLYTRQADLIIVAAGCVNLLRSDMVKE  221 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence            4689999999999986 69999999998999999876542      3689999999999888 7778887776654

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.81  E-value=0.014  Score=51.50  Aligned_cols=53  Identities=30%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------CcccC---hhhhcccCcEEEE
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------SQVSC---QSSGWHCKQVISI  207 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~~~~~---l~ell~~sD~v~l  207 (226)
                      ||||||-|.+|+.+++.++.+|++|+.+++.+...          ....+   +.++...+|+++.
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            69999999999999999999999999999875433          01222   5667778888753

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=95.78  E-value=0.013  Score=45.70  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=27.3

Q ss_pred             EEEEEcCChHHHHHHHHHc-cCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~  186 (226)
                      +|||-|||+|||.++|.+. .-.++|.+++-..
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~   34 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA   34 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence            7999999999999999997 6678988886543

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.76  E-value=0.03  Score=48.42  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+.+....      .+|.+..++||+++.. ....|+..++++.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~  222 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------QDLASITREADILVAAAGRPNLIGAEMVKP  222 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4689999999999986 69999999999999998875432      2789999999999987 7777777776654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.74  E-value=0.012  Score=50.74  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++|||||.|.+|..+|..+...|.+|+.||+++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999999999999999999999999998654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.74  E-value=0.015  Score=50.77  Aligned_cols=58  Identities=16%  Similarity=0.055  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-cCC-CEEEEEcCCCCCC------C--------cccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASH------S--------QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~------~--------~~~~l~ell~~sD~v~l~~  209 (226)
                      ..++|+|+|.|..|+..++.+. .++ -+|..|+|++...      .        ...+.++.+..+|+|+...
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCAT  197 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEee
Confidence            4689999999999999998554 355 4799999986542      0        1245677889999997763

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.74  E-value=0.032  Score=47.92  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+......      .+|.+..++||+++.. ....|+..++++.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~  220 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------RNLKQLTKEADILVVAVGVPHFIGADAVKP  220 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4689999999999986 69999999999999998775432      2689999999999888 7777887777654

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.014  Score=54.09  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.|++|.|+|+|.+|.+.++.|+..|++|+++|+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            346899999999999999999999999999999965

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.016  Score=52.79  Aligned_cols=37  Identities=41%  Similarity=0.602  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|+|.|.+|.++|+.|...|++|+++|+..
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3678999999999999999999999999999999975

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=95.70  E-value=0.013  Score=49.26  Aligned_cols=34  Identities=44%  Similarity=0.742  Sum_probs=32.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEE
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~  182 (226)
                      .++.|+|+.|-|+|.+|+.+|+.|...|++|+++
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~v   61 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAV   61 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            4699999999999999999999999999999998

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.67  E-value=0.032  Score=47.79  Aligned_cols=68  Identities=16%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+.+..+.      .+|.+..++||+++.. ...+|+..++++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~  222 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------KNLKEVCKKADILVVAIGRPKFIDEEYVKE  222 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence            4589999999999986 69999999999999998886542      2689999999999888 7778887777654

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.67  E-value=0.034  Score=47.75  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+....+.      .+|.+..++||+++.. ....|+..++++.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~  223 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------QNLPSIVRQADIIVGAVGKPEFIKADWISE  223 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEeCCCcCccCHHHcCC
Confidence            5689999999999986 69999999999999999886542      2689999999999887 7778887777654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.66  E-value=0.012  Score=50.34  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+...|.+|+.+|+++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            5899999999999999999999999999997653

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.65  E-value=0.0079  Score=53.08  Aligned_cols=44  Identities=32%  Similarity=0.459  Sum_probs=38.4

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......|..++|.|+|.|.+|..+|+.|...|. +|..+|..
T Consensus        13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            455444578999999999999999999999999999 89999985

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.015  Score=53.29  Aligned_cols=37  Identities=32%  Similarity=0.458  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.|++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   42 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP   42 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence            4778999999999999999999999999999999764

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.59  E-value=0.038  Score=47.48  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+......      .+|.+..++||+++.. ....|+..++++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~  222 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------TDLKSHTTKADILIVAVGKPNFITADMVKE  222 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------CCHHHHhhhcCEEEEccCCcCcCCHHHcCC
Confidence            5689999999999986 69999999998899999886542      2788999999999888 7777877776653

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.58  E-value=0.039  Score=47.48  Aligned_cols=68  Identities=19%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+.      .+|.+..++||+++.. ....|+..++++.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~  219 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------QDLPAVTRRADVLVVAVGRPHLITPEMVRP  219 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence            4689999999999875 69999999999999998775542      2689999999999888 7778887777653

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=95.57  E-value=0.014  Score=52.28  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC------------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|.|+|.|.||+.+|..|..-| .+|+..||+....                  .+.+.+.++++..|+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence            68999999999999999999888 9999999984321                  1244577888888887766

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.56  E-value=0.035  Score=47.02  Aligned_cols=55  Identities=18%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccC-CCEEEE-EcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~af-G~~V~~-~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|+ |++|+.+++.+... ++++.+ +++.+...        ....++++++...|+++..
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEEC
Confidence            37999998 99999999998854 788766 66654321        1246788888888888755

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.54  E-value=0.018  Score=53.33  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.+++|+|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            568999999999999999999999999999999754

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.53  E-value=0.021  Score=52.57  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +..+.+++|.|+|.|.+|.++|+.|+..|.+|.++++..
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            346788999999999999999999999999999999764

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.53  E-value=0.041  Score=47.60  Aligned_cols=68  Identities=13%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+.+....      .++++..++||+++.. ....++..++++.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~  231 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------PDPESIVREADIVIAAAGQAMMIKGDWIKP  231 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCccCHHHcCC
Confidence            5689999999999986 59999999998899999885532      3689999999999988 5667776666654

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.52  E-value=0.011  Score=54.37  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |||||+|.+|+.+|+.|..-|.+|++|+|++.
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~   33 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPE   33 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            89999999999999999999999999999754

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.52  E-value=0.019  Score=46.92  Aligned_cols=38  Identities=32%  Similarity=0.424  Sum_probs=35.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ...|..++|+|+|.|.+|..+|..|...|. +++.+|+.
T Consensus        16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            467899999999999999999999999999 69999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.52  E-value=0.025  Score=53.41  Aligned_cols=61  Identities=15%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------CcccC---hhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------SQVSC---QSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~~~~~---l~ell~~sD~v~l~  208 (226)
                      ......|||||||-|..|+.++..++.+|++|+.+++.+...          .++.+   +.++...+|+++..
T Consensus        17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e   90 (577)
T PLN02948         17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVE   90 (577)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEe
Confidence            345889999999999999999999999999999999876432          11223   45566778887654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.019  Score=52.85  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=35.1

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+++|.|+|+|..|+++|+.|+..|++|.++|+..
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            56788999999999999999999999999999999753

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.49  E-value=0.04  Score=47.42  Aligned_cols=68  Identities=21%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+....+      ..+|.+..++||+++.. ....+|..++++.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~  223 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------THNLSSITSKADIVVAAIGSPLKLTAEYFNP  223 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------CCCHHHHHhhCCEEEEccCCCCccCHHHcCC
Confidence            4589999999999986 5999999999889999876543      23689999999999987 7777887777654

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.47  E-value=0.036  Score=48.41  Aligned_cols=56  Identities=18%  Similarity=0.197  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-------C-----------cccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-------S-----------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-------~-----------~~~~l~ell~~sD~v~l~  208 (226)
                      .+++|+|+|.|+||..+|-.+...|.  ++..+|+.....       .           ...+. +.++.||++++.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEe
Confidence            56799999999999999999987787  799999864432       0           01122 446888888886

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.45  E-value=0.0099  Score=49.70  Aligned_cols=55  Identities=13%  Similarity=0.277  Sum_probs=40.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhh---cccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSG---WHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~el---l~~sD~v~l~  208 (226)
                      .++|.||+|+.|..+.++|..-|-+|++||+++...        ....+|+++   |+..-+|.+-
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlM   66 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLM   66 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEE
Confidence            368999999999999999999999999999976432        234445543   3445555544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.42  E-value=0.014  Score=52.95  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhh-cccCcEEEEeccCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSG-WHCKQVISIFNEKG  212 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~el-l~~sD~v~l~~~~d  212 (226)
                      ++.|+|+|.+|+.+|+.|...|.+|+++++++...                .....|+++ +..+|.+.+....|
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~   76 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD   76 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence            68999999999999999999999999999864321                012234444 67788777764433

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.41  E-value=0.01  Score=52.68  Aligned_cols=52  Identities=23%  Similarity=0.325  Sum_probs=41.6

Q ss_pred             HHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.++..-..|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus         9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597          9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34443334466555678999999999999999999999999998 68888875

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=95.41  E-value=0.02  Score=48.76  Aligned_cols=55  Identities=22%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC------C--c-ccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH------S--Q-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~------~--~-~~~l~ell~~sD~v~l~  208 (226)
                      .++|+||.|++|++++..+..-|    .+|+..+|+....      +  . ..+.+++..++|++.|.
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~La   69 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLA   69 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEE
Confidence            58999999999999999998777    6899988875432      1  1 34556788888888887

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.40  E-value=0.023  Score=52.30  Aligned_cols=36  Identities=25%  Similarity=0.218  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.||+|+|+|+|.-|+++|+.|+..|++|+.+|...
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            468999999999999999999999999999999643

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.40  E-value=0.016  Score=44.40  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +-|+|-|++|+++++.++.+|++|+.+|+++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            46999999999999999999999999999854

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.36  E-value=0.025  Score=49.10  Aligned_cols=58  Identities=10%  Similarity=0.040  Sum_probs=45.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------C-------cccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------S-------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------~-------~~~~l~ell~~sD~v~l~  208 (226)
                      ...++++|+|.|.+|+..++.+. .++. +|..|+|++...      .       ...+.++++.++|+|+..
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVita  195 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTA  195 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEc
Confidence            35689999999999999999986 4675 699999975432      1       134677888899998877

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.33  E-value=0.018  Score=43.69  Aligned_cols=33  Identities=42%  Similarity=0.634  Sum_probs=29.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .++|.|+|.|.+|.++|+.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            6899999999999999999999999 69998885

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.30  E-value=0.057  Score=46.35  Aligned_cols=68  Identities=12%  Similarity=0.140  Sum_probs=56.4

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+..+.      .+|.+..++||+++.. ....+|..++++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~  221 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------ADLAGEVGRADILVAAIGKAELVKGAWVKE  221 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------CCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence            4579999999999986 69999999998899999876542      2689999999999888 6777777776654

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.30  E-value=0.058  Score=46.45  Aligned_cols=68  Identities=19%  Similarity=0.140  Sum_probs=55.6

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-    ++.|+......      .+|.+.+++||+++.. ....||..++++.
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~  221 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------ENLTEILKTADIIIAAIGVPLFIKEEMIAE  221 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4689999999999986 599999999876    88999875432      2789999999999987 6777777776654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.25  E-value=0.013  Score=52.38  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=43.9

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .+|.++..-..|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3455554445576555678999999999999999999999999998 78888885

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.23  E-value=0.014  Score=42.97  Aligned_cols=54  Identities=15%  Similarity=0.077  Sum_probs=39.9

Q ss_pred             EEEEEcCChHHHHHHHHHccC--CCEEE-EEcCCCCCC---------CcccChhhhcc--cCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASH---------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~~~---------~~~~~l~ell~--~sD~v~l~  208 (226)
                      ++||||+|.+|+...+-+...  +++|. .+|+++...         ..+.++++++.  ..|++.+.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~   69 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIA   69 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEe
Confidence            699999999999998777755  66766 466654221         23677899998  67777776

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.20  E-value=0.064  Score=46.12  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHcc--CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a--fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..  -|+.|+......      .+|.+..++||+++.. ....||..++++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~  224 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------RDLAAHTRRADIIVAAAGVAHLVTADMVKP  224 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------CCHHHHHHhCCEEEEecCCcCccCHHHcCC
Confidence            5689999999999875 69999999987  799998876542      3689999999999988 7778888777764

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.18  E-value=0.055  Score=47.91  Aligned_cols=68  Identities=13%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+....      .++.+..++||+++.. ....||..++++.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~  295 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------KNPEEITREADIIISAVGQPNMVRGSWIKP  295 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------CCHHHHHhhCCEEEEcCCCcCcCCHHHcCC
Confidence            4689999999999986 59999999999999999875442      3789999999999988 7777877776654

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=95.18  E-value=0.053  Score=47.74  Aligned_cols=68  Identities=12%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|.......      .++++..++||+++.. ....||..++++.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~  278 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------KDPEQITRKADIVIAAAGIPNLVRGSWLKP  278 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            5689999999999986 59999999999999998876542      2689999999999987 7777777766653

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.16  E-value=0.033  Score=50.75  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +.++++.|+|.|.+|.++|+.|...|.+|.++|.....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            56899999999999999999999999999999976543

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.10  E-value=0.026  Score=49.20  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=28.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~  185 (226)
                      -+|||=|||+|||.++|.+..-+  |+|++++--
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~   35 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL   35 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            37999999999999999998664  999998773

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.08  E-value=0.045  Score=37.45  Aligned_cols=35  Identities=34%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      ++.|||-|.||-++|..++.+|.+|..+.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58899999999999999999999999999976654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.07  E-value=0.062  Score=46.23  Aligned_cols=68  Identities=10%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|+.|+.+...      ..+|.+.+++||+++.. ...++|..++++.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~  222 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------TKNLAELTKQADILIVAVGKPKLITADMVKE  222 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------chhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence            4589999999999885 6999999999999999887543      23789999999999887 6777777777643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.05  E-value=0.06  Score=48.65  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=50.8

Q ss_pred             ccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCCC-----cccChhhhcccCcEEEEec
Q 027226          150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHS-----QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       150 ~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~~-----~~~~l~ell~~sD~v~l~~  209 (226)
                      .+.|++|+|+|+          .+-...+++.|...|++|.+|||......     ...++++.+..+|.++++.
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t  384 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILT  384 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEec
Confidence            578999999998          66788999999999999999999865431     1367889999999999993

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.02  E-value=0.027  Score=44.39  Aligned_cols=53  Identities=21%  Similarity=0.235  Sum_probs=42.8

Q ss_pred             EEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhcccCcEEEEe
Q 027226          156 VFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       156 vgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~~sD~v~l~  208 (226)
                      |.|+| .|.+|+.+++.|..-|.+|+++.|++.+.             .+...+.+.++.+|.+...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~   67 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHA   67 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhh
Confidence            67899 59999999999999999999999987641             1334556778888888776

...

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.01  E-value=0.01  Score=52.99  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=31.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|+||+|+|-||--+|-.+..-|++|+|+|-..+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~   43 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQK   43 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHH
Confidence            7999999999999999999999999999998643

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.97  E-value=0.038  Score=48.48  Aligned_cols=57  Identities=14%  Similarity=0.021  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..++++|+|.|..|+..++.+. .++. +|..|+|+....               ....++++.+..+|+|+..
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvta  201 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTT  201 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEe
Confidence            3579999999999999999996 5785 699999985432               0135567788899998887

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.97  E-value=0.061  Score=48.80  Aligned_cols=62  Identities=6%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             CCccCCCEEEEEcC----------ChHHHHHHHHHccCC-CEEEEEcCCCCCC-------CcccChhhhcccCcEEEEec
Q 027226          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASH-------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       148 ~~~l~gktvgIvG~----------G~IG~~vA~~l~afG-~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~~  209 (226)
                      +..+.|++|+|+|+          .+-...+++.|+..| ++|.+|||.....       ....++++.+..+|.++++.
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45689999999998          668889999999996 9999999975432       12467889999999999993

>PRK08223 hypothetical protein; Validated

Probab=94.97  E-value=0.054  Score=46.68  Aligned_cols=39  Identities=23%  Similarity=0.307  Sum_probs=34.6

Q ss_pred             CCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ....|+.++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus        21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4578999999999999999999999999998 67777774

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.96  E-value=0.043  Score=46.72  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+++++|+|.|.+|++++..+...|.+|+.++|+..
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~  151 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS  151 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35679999999999999999999999999999999754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.036  Score=50.52  Aligned_cols=36  Identities=14%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++-+++|+|+|.+|..+|+.|+..|.+|.++|....
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   40 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ   40 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence            456899999999999999999999999999997643

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.95  E-value=0.068  Score=46.74  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~  187 (226)
                      ...++|+|||.|.+|..+|-.+...| .+|..+|....
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~   40 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG   40 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence            45679999999999999999998777 68999998653

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.94  E-value=0.038  Score=43.62  Aligned_cols=40  Identities=15%  Similarity=0.251  Sum_probs=33.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+...+|.|+|.|+.|+..++.|+++|++|..++.++.
T Consensus        15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            3567789999999999999999999999999999998643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.91  E-value=0.034  Score=48.29  Aligned_cols=33  Identities=27%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|+|.|.||..+|.+|+..|.+|..+.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            589999999999999999999999999999865

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.90  E-value=0.0098  Score=49.96  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=34.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ...|++++|.|+|.|.+|..+|+.|...|. +++.+|+..
T Consensus        19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            467999999999999999999999999998 688888753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.87  E-value=0.034  Score=51.68  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      =++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999999754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.87  E-value=0.094  Score=45.41  Aligned_cols=68  Identities=13%  Similarity=0.165  Sum_probs=54.4

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-    ++.|......      ..+|.+..++||+++.. ...++|..++++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~  225 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------TDDLAAKTRRADIVVAAAGVPELIDGSMLSE  225 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------CCCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4579999999999986 699999999754    8999876433      22689999999999987 7777777776654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.85  E-value=0.035  Score=51.63  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999988999999999755

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.84  E-value=0.033  Score=48.78  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=30.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|||.|.+|..+|..|..-|.+|+.|+|+.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            479999999999999999998899999999864

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.82  E-value=0.048  Score=47.83  Aligned_cols=67  Identities=10%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCC-CEEEEEcCCCCCC---------C-----cccChhhhcccCcEEEEe--ccCCcc
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASH---------S-----QVSCQSSGWHCKQVISIF--NEKGFS  214 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG-~~V~~~~r~~~~~---------~-----~~~~l~ell~~sD~v~l~--~~~d~i  214 (226)
                      -+++||+|.|.+|+.-++.+. .+. -+|..|+|+....         .     ...+.+++++.+|+|+..  ...-++
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~~  207 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPVV  207 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcEe
Confidence            489999999999998766654 233 4799999985442         1     145678899999999887  233344


Q ss_pred             ccccc
Q 027226          215 SGEYC  219 (226)
Q Consensus       215 ~~~~~  219 (226)
                      ..+.+
T Consensus       208 ~~~~l  212 (325)
T TIGR02371       208 KADWV  212 (325)
T ss_pred             cHHHc
Confidence            44433

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.81  E-value=0.034  Score=47.66  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|+|.|++|..+|..|..-|.+|..++|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999998899999999854

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.79  E-value=0.07  Score=45.40  Aligned_cols=55  Identities=16%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEc-CCCCCC----------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATK-RSWASH----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~-r~~~~~----------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||+|+|+||+.+++.+... ++++.++- +.....          .-..+++++-...|+++..
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~   68 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVEC   68 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEEC
Confidence            3799999999999999999865 56654432 321110          1134566663456777766

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.76  E-value=0.043  Score=50.28  Aligned_cols=38  Identities=26%  Similarity=0.364  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCChHHHH-HHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+++++.|+|+|..|.. +|+.|+..|.+|.++|....
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            456789999999999999 79999999999999998654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=94.75  E-value=0.047  Score=47.86  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..++++|+|.|.+|+..++.+. ..+. +|..|+|++...               ....+++++++.+|+|+..
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~a  199 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTV  199 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEc
Confidence            4689999999999999887764 5676 699999975432               0135567788888888776

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.74  E-value=0.067  Score=46.44  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~  188 (226)
                      ++|+|+|.|.+|+.+|..|...|.  +|..+|+....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            479999999999999999998884  79999996543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.72  E-value=0.032  Score=50.76  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -+|||||+|.+|..+|..+.. |.+|++||++...
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~   40 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKR   40 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHH
Confidence            579999999999999999887 7999999997544

>PRK07411 hypothetical protein; Validated

Probab=94.71  E-value=0.02  Score=51.52  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=37.3

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......|+..+|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        27 ~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         27 EVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            354444578999999999999999999999999998 68888874

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.71  E-value=0.11  Score=44.99  Aligned_cols=68  Identities=13%  Similarity=0.145  Sum_probs=54.3

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-    ++.|+......      .+|.+..++||+++.. ...+||..++++.
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~  225 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------KNLKKECLEADIIIAALGQPEFVKADMVKE  225 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------CCHHHHHhhCCEEEEccCCcCccCHHHcCC
Confidence            4579999999999986 599999999754    79998874432      2689999999999887 7777777666653

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.71  E-value=0.047  Score=47.98  Aligned_cols=30  Identities=20%  Similarity=0.655  Sum_probs=25.6

Q ss_pred             EEEEEcCChHHHHHHHHHcc--------CCCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRP--------FGVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~a--------fG~~V~~~~r  184 (226)
                      +|+|+|||+||+.+++.+..        ++.+|.++..
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsd   39 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSD   39 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEE
Confidence            79999999999999999864        7788777654

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=94.69  E-value=0.051  Score=45.81  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=31.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -++-|+|-|++++++|+.++.+|++|+.+|.++.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            5899999999999999999999999999997644

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.66  E-value=0.1  Score=43.43  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCE---EEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~---V~~~~r~  185 (226)
                      +..+.++++.|+|.|..|+.+|+.|...|++   |+.+||+
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4578999999999999999999999999985   9999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.66  E-value=0.046  Score=47.11  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  186 (226)
                      .+.+|++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            47889999999999999999999999996 99999975

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.60  E-value=0.038  Score=42.47  Aligned_cols=56  Identities=21%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHc--cCCCEEEEEcCCCCCC------------------CcccChhhhcccCcEEEEecc
Q 027226          155 TVFILGF-GNIGVELAKRLR--PFGVKIIATKRSWASH------------------SQVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~--afG~~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~~~  210 (226)
                      +|+|+|. |++|+.+|-.|.  .++-++..+|+.....                  .-..+..+.++.||++++..-
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            7999999 999999999886  6667899999974321                  001245677889999998743

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.59  E-value=0.043  Score=48.02  Aligned_cols=55  Identities=20%  Similarity=0.220  Sum_probs=45.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC-----------CC-----------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----------SH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~-----------~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|.|+|.|+-|.++|..|..-|-+|..|.|.+.           +.           ....++++.+..+|++.+.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a   78 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA   78 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEE
Confidence            5899999999999999999999999999998521           11           1256788888889988887

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.59  E-value=0.027  Score=50.33  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......+.+++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus       124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            454433467899999999999999999999999999 69999886

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.051  Score=46.70  Aligned_cols=47  Identities=19%  Similarity=0.254  Sum_probs=39.4

Q ss_pred             hCCCCCCCCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          140 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       140 ~~~w~~~~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.|......++.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus         3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~   50 (306)
T PRK06197          3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL   50 (306)
T ss_pred             CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3557554457899999999985 8999999999999999999998863

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.55  E-value=0.022  Score=46.35  Aligned_cols=43  Identities=30%  Similarity=0.471  Sum_probs=36.9

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~  185 (226)
                      |.......|++++|.|+|+|.+|.++|+-|...|.. +..+|..
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            655455789999999999999999999999999984 8888764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.50  E-value=0.045  Score=49.24  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|+|+|+|.+|..+|..++ .|.+|++||++...
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHH
Confidence            6999999999999998776 49999999997543

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.062  Score=48.82  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.++++.|+|+|..|...++.|+..|.+|.++|....
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            5688999999999999999999999999999997543

>PRK04148 hypothetical protein; Provisional

Probab=94.41  E-value=0.044  Score=41.87  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +++++.+||+| -|..+|+.|+..|.+|++.|.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            56899999999 999999999999999999998865

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.36  E-value=0.069  Score=47.78  Aligned_cols=60  Identities=27%  Similarity=0.329  Sum_probs=49.8

Q ss_pred             cCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEecc
Q 027226          151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       151 l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~~~  210 (226)
                      |.||||||+|+          .+--..++++|+..|++|++|||-..+.        .=..++++++..||.+++..+
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            99999999998          3567889999999999999999965543        114678899999999999843

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.33  E-value=0.15  Score=44.01  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHcc----CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a----fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..    -|++|.....+      ..+|.+.++.||+++.. ....+|..++++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~  225 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------TPDLAEECREADFLFVAIGRPRFVTADMVKP  225 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------chhHHHHHHhCCEEEEecCCCCcCCHHHcCC
Confidence            4689999999999986 59999999987    78998887654      23789999999999887 6667777766643

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.30  E-value=0.042  Score=47.77  Aligned_cols=38  Identities=26%  Similarity=0.443  Sum_probs=34.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      -.|.|+.|.|+|.+|.+++.-+++.|+ +|+++|-.+.+
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            458999999999999999999999999 79999987544

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.28  E-value=0.036  Score=49.53  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             EEEEcCChHHHHHHHHHccCC-C-EEEEEcCCCCC--------C-----------CcccChhhhcccCcEEEEe
Q 027226          156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWAS--------H-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG-~-~V~~~~r~~~~--------~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      |+|+|.|.+|+.+++.|...+ . +|+..+|+...        .           ....+|+++++.+|+++..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC   74 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence            789999999999999998665 5 89999997544        1           1234578899999999876

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.27  E-value=0.075  Score=43.72  Aligned_cols=36  Identities=25%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.|+++.|.|- |.||+.+|+.+...|.+|+..+|+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67999999998 9999999999999999999999874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.21  E-value=0.13  Score=45.11  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~  187 (226)
                      +..++|+|||.|++|..+|..+..-| ++|..+|.++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            45579999999999999999988667 48999998765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.21  E-value=0.078  Score=44.04  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|++|..-|++|+..+|+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999985 9999999999999999999999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.19  E-value=0.065  Score=40.91  Aligned_cols=31  Identities=35%  Similarity=0.572  Sum_probs=28.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      +|.|+|.|.+|.++|+.|...|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999999 69999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=94.17  E-value=0.077  Score=46.58  Aligned_cols=57  Identities=11%  Similarity=-0.021  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------------C---cccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------------~---~~~~l~ell~~sD~v~l~  208 (226)
                      ..++++|+|.|.+|+..+..+. ..+. +|..|+|+....            .   ...++++++..+|+++..
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~a  204 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTT  204 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEe
Confidence            3489999999999999888887 4665 799999984432            1   135677888899999877

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.14  E-value=0.05  Score=44.76  Aligned_cols=43  Identities=26%  Similarity=0.184  Sum_probs=36.5

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~  185 (226)
                      |.......|..++|+|+|.|.+|..+|+.|...|.. +..+|..
T Consensus        18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            333345689999999999999999999999988984 8888886

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.13  E-value=0.13  Score=48.40  Aligned_cols=46  Identities=24%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             CCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       141 ~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|.........|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus       125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4565443345679999999999999999999999999999999754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.13  E-value=0.029  Score=50.48  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=37.0

Q ss_pred             CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus        31 ~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         31 DVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             hcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            354444578999999999999999999999998888 68888874

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.08  E-value=0.07  Score=40.88  Aligned_cols=31  Identities=35%  Similarity=0.488  Sum_probs=29.3

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |.|+|.|.||..+|-+|+.-|.+|..++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999988999999999976

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.076  Score=43.98  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999995 99999999999999999999998643

>PRK12828 short chain dehydrogenase; Provisional

Probab=94.02  E-value=0.077  Score=43.20  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+.+||+.|.|- |.||+.+++.+..-|.+|+..+|+..+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence            477899999985 999999999999889999999996543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.01  E-value=0.062  Score=39.22  Aligned_cols=32  Identities=34%  Similarity=0.694  Sum_probs=27.6

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.|+|+|++|+.+++.|+..+.+|+.+++.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            57999999999999999997779999999753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.99  E-value=0.066  Score=46.19  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ..+.+|++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            35788999999999999999998988897 799999985

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.97  E-value=0.17  Score=43.77  Aligned_cols=68  Identities=12%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHcc----CCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~a----fG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..    -|++|.......      .++.+.++.||+++.. ....+|..++++.
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------~~l~~~~~~ADIvI~Avg~~~li~~~~vk~  227 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------KDIPSYTRQADILIAAIGKARFITADMVKP  227 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------hhHHHHHHhCCEEEEecCccCccCHHHcCC
Confidence            4589999999999986 59999999876    588888765542      3689999999999888 6667887777744

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.96  E-value=0.17  Score=43.81  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=54.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccC----CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~af----G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-    ++.|......      ..++.+..++||+++.. ....+|..++++.
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~  229 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------SKNLARHCQRADILIVAAGVPNLVKPEWIKP  229 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------CcCHHHHHhhCCEEEEecCCcCccCHHHcCC
Confidence            5689999999999885 699999999865    7999876443      23688999999999986 6777777766653

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=93.85  E-value=0.1  Score=45.36  Aligned_cols=38  Identities=32%  Similarity=0.505  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      ..++|.++|-|..|+++|=-+..+|.+|+++||+....
T Consensus        11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~AP   48 (394)
T COG0027          11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP   48 (394)
T ss_pred             CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCCh
Confidence            45679999999999999999999999999999997654

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.80  E-value=0.083  Score=50.22  Aligned_cols=59  Identities=29%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---CCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcC
Q 027226          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR  184 (226)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r  184 (226)
                      ....||-++-+=|-+.             +|+-.   ....|++.+|+|+|.|.+|..+|+.|.+.|. +++.+|.
T Consensus       308 P~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~  370 (664)
T TIGR01381       308 PKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN  370 (664)
T ss_pred             HHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence            4556777666655555             36532   2367899999999999999999999999999 5888876

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PLN00106 malate dehydrogenase

Probab=93.79  E-value=0.25  Score=43.37  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=41.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHcc--CCCEEEEEcCCCCCC-------------C----cccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASH-------------S----QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~a--fG~~V~~~~r~~~~~-------------~----~~~~l~ell~~sD~v~l~  208 (226)
                      ..++|+|+|. |+||..+|-.|..  +.-++..+|......             .    +..++.+.++.+|++++.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVit   93 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIP   93 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEe
Confidence            4479999999 9999999999984  444899999865211             0    122335678889998887

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.77  E-value=0.11  Score=40.50  Aligned_cols=30  Identities=30%  Similarity=0.427  Sum_probs=25.1

Q ss_pred             EEEEEcCChHHHHHHHHHc-cCCCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~-afG~~V~~~~r  184 (226)
                      +|||+|+|+||+.+++.+. .-++++.+..-
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d   32 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAIND   32 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence            7999999999999999887 46788777543

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.75  E-value=0.073  Score=48.26  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++.|+|+|.+|.++|+.|+..|.+|.++|....
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            378999999999999999999999999997644

>PRK08703 short chain dehydrogenase; Provisional

Probab=93.73  E-value=0.11  Score=42.67  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..++++++.|.|- |.||+++|+.+...|++|++++|+..
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~   41 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK   41 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence            3578899999985 89999999999999999999999763

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.72  E-value=0.11  Score=42.51  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++.++++.|.|- |.||+++++.|..-|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999987 77999999999999999999999653

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=93.70  E-value=0.11  Score=42.76  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            378999999997 7999999999999999999999864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.68  E-value=0.11  Score=43.13  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=34.7

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..++||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4688999999995 89999999999999999999998643

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.12  Score=43.05  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.|+++.|.|- |.||+++++.+...|++|+..+|+..
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999998 99999999999999999999988643

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.58  E-value=0.1  Score=46.17  Aligned_cols=31  Identities=19%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r  184 (226)
                      .+|||+|+|+||+.+++.+.. =+|++.+...
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d   33 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAK   33 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            379999999999999998874 4788777654

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=93.54  E-value=0.12  Score=44.82  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=44.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+++||+|.|..|+.-++.+. -+.. +|..|+|++...               ....+.++.+..||+|+..
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEe
Confidence            589999999999998877775 4566 699999986542               1135688899999999887

>PRK06823 ornithine cyclodeaminase; Validated

Probab=93.53  E-value=0.13  Score=44.98  Aligned_cols=56  Identities=14%  Similarity=0.001  Sum_probs=44.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -++++|+|.|..++.-++.+. .+.. +|..|+|++...              ....+.++.++.+|+|+..
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEe
Confidence            489999999999999888775 4444 799999986552              0135678889999999887

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.53  E-value=0.13  Score=42.63  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=34.2

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999995 9999999999999999999998864

>PRK14852 hypothetical protein; Provisional

Probab=93.52  E-value=0.096  Score=52.04  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=36.1

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.......|+.++|+|+|+|.+|..+|+.|...|. ++..+|..
T Consensus       322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D  365 (989)
T PRK14852        322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD  365 (989)
T ss_pred             cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            55444578999999999999999999999998888 57776663

>PRK06153 hypothetical protein; Provisional

Probab=93.48  E-value=0.08  Score=47.41  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ..|++++|+|||+|.+|..++..|...|. +++.+|..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            47899999999999999999999999998 78888874

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.48  E-value=0.11  Score=44.93  Aligned_cols=54  Identities=13%  Similarity=0.215  Sum_probs=42.1

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|.| .|.||+.+++.|..-|.+|++.+|+....               .+..++.+.+..+|++..+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~   71 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDA   71 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence            688999 69999999999998899999999874321               1234466778888987765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.48  E-value=0.088  Score=45.20  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +|+|+|.|.+|..+|..|..-|.+|+.++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999988999999998

>PRK06046 alanine dehydrogenase; Validated

Probab=93.47  E-value=0.12  Score=45.38  Aligned_cols=55  Identities=18%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------C---------cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------S---------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------~---------~~~~l~ell~~sD~v~l~  208 (226)
                      -++|||+|.|.+|+..++.+. ..+. +|..|+|+....      .         ...++++++. +|+|++.
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEe
Confidence            479999999999999998886 4566 577789975331      0         1345778876 9999887

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=93.47  E-value=0.8  Score=40.41  Aligned_cols=118  Identities=14%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             HHHHhcCCCceEEEecCccCC------ccch-hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHh
Q 027226           68 SNCISRANQMKLIMQFGVGLE------GVDI-NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ  140 (226)
Q Consensus        68 ~~~l~~~~~Lk~I~~~~aG~d------~id~-~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~  140 (226)
                      ..+++++.++=.+-....|.+      +-.+ ..+.-.+++|.|..+. .+-.++.++.     +.+.+.          
T Consensus        99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl-----~Ti~e~----------  162 (335)
T PRK04523         99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHA-----LALQEH----------  162 (335)
T ss_pred             HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHH-----HHHHHH----------
Confidence            455666656544444455654      1112 2234468999999664 3123333442     222221          


Q ss_pred             CCCCCCCCCcc-CCCEEEEEcCC-------hHHHHHHHHHccCCCEEEEEcC-CC---CCC----------------Ccc
Q 027226          141 KKLGVPTGETL-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SW---ASH----------------SQV  192 (226)
Q Consensus       141 ~~w~~~~~~~l-~gktvgIvG~G-------~IG~~vA~~l~afG~~V~~~~r-~~---~~~----------------~~~  192 (226)
                            .+ .+ .|++|+|+|.|       ++....+..+..|||+|....| ..   .+.                ...
T Consensus       163 ------~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~  235 (335)
T PRK04523        163 ------FG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVS  235 (335)
T ss_pred             ------hC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEE
Confidence                  12 36 79999887654       6788888888999999999998 32   111                013


Q ss_pred             cChhhhcccCcEEEEe
Q 027226          193 SCQSSGWHCKQVISIF  208 (226)
Q Consensus       193 ~~l~ell~~sD~v~l~  208 (226)
                      .++++.++.+|+|...
T Consensus       236 ~d~~ea~~~aDvvy~~  251 (335)
T PRK04523        236 HDIDSAYAGADVVYAK  251 (335)
T ss_pred             cCHHHHhCCCCEEEec
Confidence            6778999999999886

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=93.46  E-value=0.077  Score=45.69  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      ....|+++.|+|.|..+++++--|+..|+ +|..++|+...
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~r  162 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRER  162 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            45689999999999999999999999996 79999997654

>PRK06398 aldose dehydrogenase; Validated

Probab=93.45  E-value=0.13  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            578999999994 699999999999999999999987543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.42  E-value=0.12  Score=45.00  Aligned_cols=55  Identities=22%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCCC-------cc-----------cChhhhcccCcEEEEecc
Q 027226          155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHS-------QV-----------SCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~~-------~~-----------~~l~ell~~sD~v~l~~~  210 (226)
                      +|+|||.|.+|..+|..+...|  -+|..+|+......       ..           .+. +.++.||++.+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~   76 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccC
Confidence            6999999999999999998888  58999998753220       00           122 44678888888733

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.40  E-value=0.12  Score=42.44  Aligned_cols=38  Identities=29%  Similarity=0.502  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.++++.|.|- |.||+++++.|...|.+|++.+|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999985 89999999999999999999999753

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.37  E-value=0.078  Score=46.08  Aligned_cols=61  Identities=18%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ......-+|.|+|.|-+|..-|+.+.++|++|...|++...-               .....+++.+..+|++.-.
T Consensus       163 vpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         163 VPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            356778899999999999999999999999999999974331               1345577788888887643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.34  E-value=0.11  Score=47.12  Aligned_cols=38  Identities=37%  Similarity=0.336  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+..+++.|+|+|.+|+.+++.|...|.+|+.+++++.
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            35579999999999999999999999999999988754

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=93.34  E-value=0.094  Score=44.43  Aligned_cols=52  Identities=23%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .+|.++.+-  |.......|...+|.|+|.|.+|.++|+.|...|. ++..+|..
T Consensus         7 ~RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD   59 (287)
T PTZ00245          7 VRYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG   59 (287)
T ss_pred             HHHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence            345555444  77666688999999999999999999999999998 57777764

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.33  E-value=0.14  Score=43.29  Aligned_cols=54  Identities=20%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccC--cEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCK--QVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~s--D~v~l~  208 (226)
                      +|.|+| .|.||+.+++.|..-|.+|++++|+.-.-.....+++++...  |++...
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~   57 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNT   57 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEEC
Confidence            477888 599999999999989999999998633323445666777765  776654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08862 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.11  Score=42.82  Aligned_cols=38  Identities=13%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .++||++.|.|-++ ||+++|+.|..-|++|+..+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999776 999999999999999999988653

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.30  E-value=0.41  Score=40.54  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  186 (226)
                      .|++|.|+|.|.||...++.++++|++ |++.+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            689999999999999999999999997 88887654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.30  E-value=0.16  Score=42.59  Aligned_cols=36  Identities=31%  Similarity=0.468  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|-   +.||+++|+.|..-|++|+..+|+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            478999999997   589999999999999999988764

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=93.28  E-value=1.1  Score=39.49  Aligned_cols=59  Identities=10%  Similarity=-0.006  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=+  ++....+..+..||++|....|..-..                   ....++++.++.+|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999986  578888889999999999998853111                   0136778899999999873

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.28  E-value=0.13  Score=48.06  Aligned_cols=38  Identities=26%  Similarity=0.531  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|+|.|.+|++++..|...|++|+.++|+.+
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            57799999999999999999999999999999999743

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=93.27  E-value=1.1  Score=39.48  Aligned_cols=59  Identities=15%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|+||+++|-+  ++.+..+..+..||++|....|..-..                   .-..++++.++.+|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999997  788888999999999999998743211                   0135678899999999885

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.23  E-value=0.12  Score=45.15  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|+|.|++|.++|..|..-|.+|..|+|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999998899999999964

>PRK07576 short chain dehydrogenase; Provisional

Probab=93.21  E-value=0.15  Score=42.83  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .++.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~   43 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ   43 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4588999999988 8999999999999999999999864

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.17  E-value=0.16  Score=42.44  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+++|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999986 89999999999999999999998754

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=93.16  E-value=0.14  Score=40.10  Aligned_cols=57  Identities=12%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             CCCEEEEEc--CChHHHHHHHHHccCCCEEEEEcCCCC--CC-------------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWA--SH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG--~G~IG~~vA~~l~afG~~V~~~~r~~~--~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .|+||+++|  .+++...++..+..||++|....|..-  +.                   .-..++++.++.+|++...
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  489999999999999999999988651  11                   0135788999999998876

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.15  E-value=0.15  Score=41.85  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.+.++++.|.| .|.||+.+++.|..-|.+|++.+|+.
T Consensus         2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            346789999999 79999999999999999999999874

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=93.15  E-value=0.12  Score=40.12  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=42.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEecc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~~~  210 (226)
                      ...|++|++||+  + +.++++++.-+.+|..+++.+...      .....-+++++.||++.+-.+
T Consensus         8 ~~~~~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs   71 (147)
T PF04016_consen    8 IGPGDKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS   71 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH
T ss_pred             hcCCCEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee
Confidence            457899999996  1 127888888899999999987332      234566789999999988844

; PDB: 3L5O_B 3NPG_A.

>PRK09186 flagellin modification protein A; Provisional

Probab=93.14  E-value=0.13  Score=42.64  Aligned_cols=36  Identities=39%  Similarity=0.468  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.+|++.|.|- |.||+++|+.|..-|++|++.+|+.
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~   38 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK   38 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence            57899999996 7999999999999999999998864

>PRK05717 oxidoreductase; Validated

Probab=93.11  E-value=0.16  Score=42.13  Aligned_cols=39  Identities=18%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+++.
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            45788999999995 8999999999999999999998764

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=93.11  E-value=0.14  Score=45.49  Aligned_cols=34  Identities=35%  Similarity=0.586  Sum_probs=31.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|||+|-|..|+.+++.++.+|++|+.+++.+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~   34 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   34 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            5899999999999999999999999999997644

This enzyme is an alternative to PurN (TIGR00639)

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.06  E-value=0.11  Score=45.03  Aligned_cols=33  Identities=33%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|+|.|.||.-+|-+|..-|.+|..+.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999998899999999964

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.01  E-value=0.16  Score=42.43  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|-+   .||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            45789999999986   799999999999999999888764

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.01  E-value=0.15  Score=45.99  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|.|+|+|..|.++|+.|+ .|.+|+++|..+
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~   32 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKF   32 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            5899999999999999999 999999999653

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=93.00  E-value=1.8  Score=38.60  Aligned_cols=59  Identities=10%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEcCC--------hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccC
Q 027226          150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCK  202 (226)
Q Consensus       150 ~l~gktvgIvG~G--------~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~s  202 (226)
                      .+.|+||+|+|.|        ++.+..+..+..|||+|....|..-..                   .-..++++.++.+
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            4789999999854        344667778889999999998863210                   0136778999999


Q ss_pred             cEEEEe
Q 027226          203 QVISIF  208 (226)
Q Consensus       203 D~v~l~  208 (226)
                      |+|...
T Consensus       247 Dvvyt~  252 (357)
T TIGR03316       247 DIVYPK  252 (357)
T ss_pred             CEEEEC
Confidence            999886

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.00  E-value=0.16  Score=42.65  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~   42 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE   42 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999986 6799999999999999999998863

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=92.92  E-value=1.3  Score=38.62  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=   +++....+..+..||++|....|..-..      .-..++++.++.+|+|...
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~  220 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML  220 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence            488999999987   5899999999999999999998854221      1246778999999998875

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.19  Score=41.46  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.++++.|.|- |.||+++++.|..-|.+|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 9999999999999999999988864

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.88  E-value=0.18  Score=41.10  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~   40 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK   40 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            47889999998 588999999999999999999998654

>PRK08264 short chain dehydrogenase; Validated

Probab=92.85  E-value=0.15  Score=41.66  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .+.++++.|.| .|.||+++|+.|..-|. +|+.++|+.+
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            46789999998 69999999999999999 9999998654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.83  E-value=0.17  Score=42.22  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|-+   .||+++|+.|..-|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            4789999999985   79999999999999999998775

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.82  E-value=0.16  Score=42.17  Aligned_cols=39  Identities=28%  Similarity=0.301  Sum_probs=34.3

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.|+++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            358899999998 578999999999999999999988654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.79  E-value=0.27  Score=42.78  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .+|+|+|.|.+|..+|..+...|. +|+.+|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            579999999999999999887665 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK07060 short chain dehydrogenase; Provisional

Probab=92.75  E-value=0.19  Score=41.20  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.++++.|.|. |.||+.+++.+..-|.+|+.++|+.
T Consensus         6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~   43 (245)
T PRK07060          6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA   43 (245)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478899999998 8999999999999999999999875

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.75  E-value=0.17  Score=42.76  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|-+   .||+++|+.|..-|++|+..+|+
T Consensus         4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            3789999999998   69999999999999999998875

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.75  E-value=0.078  Score=45.30  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.......|++++|.|+|.|.+|..+|+.|...|. +++.+|..
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            55444578999999999999999999999998895 78888864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.74  E-value=0.15  Score=42.67  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46889999999999999999999998888 78888874

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.73  E-value=0.17  Score=42.14  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             CccCCCEEEEEcC-C-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.++++.|.|- | .||+++++.|...|++|+..+|+.
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4567899999997 6 699999999999999999988764

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.73  E-value=0.15  Score=42.12  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.|. |.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            477899999985 79999999999999999999998753

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.72  E-value=0.16  Score=42.32  Aligned_cols=39  Identities=31%  Similarity=0.438  Sum_probs=33.7

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .....+++|.|+| .|.||+.+++.|..-|.+|+++.|+.
T Consensus        12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~   51 (251)
T PLN00141         12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV   51 (251)
T ss_pred             cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence            3456689999999 59999999999998899999988753

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.69  E-value=0.12  Score=45.38  Aligned_cols=30  Identities=33%  Similarity=0.588  Sum_probs=25.0

Q ss_pred             EEEEEcCChHHHHHHHHHccC----CCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPF----GVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af----G~~V~~~~r  184 (226)
                      +|||+|+|+||+.+.|.+...    +++|.....
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998754    378888754

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=92.68  E-value=1.4  Score=38.33  Aligned_cols=59  Identities=14%  Similarity=0.044  Sum_probs=47.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|= +++.+..+..+..||++|....|..-..                ....++++.++.+|+|...
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            478999999997 7899999999999999999998853111                0136788999999999876

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=92.65  E-value=0.12  Score=45.09  Aligned_cols=55  Identities=15%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             CEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +++||+|.|..|+.-++.+. .++. +|..|+|++...              ....+.++.++.+|+++..
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTA  199 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE-
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEc
Confidence            69999999999999988876 4666 699999985322              1356788999999999988

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=92.64  E-value=1.4  Score=38.45  Aligned_cols=59  Identities=12%  Similarity=0.036  Sum_probs=47.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC------------Cc----ccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH------------SQ----VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~----~~~l~ell~~sD~v~l~  208 (226)
                      .+.|+||+++|- +++....+..+..|||+|....|..-..            .+    ..++++.++.+|+|...
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999997 6899999999999999999999854211            01    35678999999999884

>PRK06125 short chain dehydrogenase; Provisional

Probab=92.64  E-value=0.2  Score=41.77  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~   41 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA   41 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            467899999998 6899999999999999999999864

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=92.63  E-value=0.33  Score=35.98  Aligned_cols=55  Identities=11%  Similarity=0.156  Sum_probs=41.9

Q ss_pred             CEEEEEc----CChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG----~G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      |++.|+|    -|..|..+.+.++..|.+|+.+++...+.   ..+.+|+|.=...|++++.
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~   62 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVC   62 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEE
Confidence            6899999    78999999999999999999999987553   2366777733788888877

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.62  E-value=0.25  Score=43.96  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+++|.|.|- |-||+.+++.|..-|.+|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5689999997 9999999999999999999999854

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.61  E-value=0.17  Score=44.34  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..|++|.|+|.|.||...+..++..|++|++++++
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            35889999999999999999999999999999884

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.55  E-value=0.16  Score=42.39  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~   43 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE   43 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3578999999997 57999999999999999999998753

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.21  Score=41.40  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL   43 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999997 8999999999999999999998864

>PRK08177 short chain dehydrogenase; Provisional

Probab=92.52  E-value=0.21  Score=40.64  Aligned_cols=35  Identities=31%  Similarity=0.443  Sum_probs=31.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|.| .|.||+++|+.|...|++|+.++|++..
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~   37 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ   37 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            6788888 8999999999999999999999997643

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.52  E-value=0.18  Score=44.41  Aligned_cols=31  Identities=35%  Similarity=0.712  Sum_probs=25.5

Q ss_pred             CEEEEEcCChHHHHHHHHHcc--------CC--CEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRP--------FG--VKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a--------fG--~~V~~~~r  184 (226)
                      -+|+|+|||++|+.+++.+..        +|  .+|.++..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~d   43 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITD   43 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEe
Confidence            489999999999999998865        56  77777643

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.50  E-value=0.34  Score=42.28  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~  187 (226)
                      ..+|+|||.|.||..+|-.+...|  -++..+|...+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            359999999999999999886444  47999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=92.49  E-value=0.48  Score=40.47  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.+|+..||+|+|+ |.||..+||.+.+-+.+..-.-|.....              -..-++|..+...|+++-.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~v  237 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWV  237 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEE
Confidence            578999999999996 9999999999999999877666432111              1234567666666666655

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.48  E-value=0.14  Score=41.00  Aligned_cols=38  Identities=34%  Similarity=0.520  Sum_probs=34.6

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|.|+.|.+-|.| .||+++..-|..-|++|+++.|.+
T Consensus         3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~   41 (245)
T KOG1207|consen    3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNE   41 (245)
T ss_pred             ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCH
Confidence            46889999999998 599999999999999999999974

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.47  E-value=0.34  Score=40.28  Aligned_cols=40  Identities=15%  Similarity=0.132  Sum_probs=35.9

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.++|++|.|||-|.++.+=++.|..+|++|+.+++...+
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~   60 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK   60 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence            4677999999999999999999999999999999997654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.47  E-value=0.29  Score=39.05  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=33.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.||+|.|||-|..|-.+|..|...|-+|..+.|++.
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            578899999999999999999999999999999999753

...

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.46  E-value=0.22  Score=41.73  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.||++.|.|-+   .||+++|++|..-|++|+..+|+
T Consensus         4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            45789999999997   49999999999999999988775

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.44  E-value=0.23  Score=48.87  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CEEEEEcCChHHHHH-HHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~v-A~~l~afG~~V~~~~r~~~  187 (226)
                      +++.|+|+|.+|... |+.|+..|.+|.++|....
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~   39 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG   39 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence            469999999999998 9999999999999997643

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.43  E-value=0.19  Score=41.66  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            367899999985 89999999999999999999998653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.42  E-value=0.19  Score=41.70  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.+|++.|.|-+   .||+++|+.|...|++|+..+|+
T Consensus         2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            4678999999974   69999999999999999999887

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.41  E-value=0.2  Score=42.56  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       151 l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.||++.|.|-+   .||+++|++|..-|++|+..+|+
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecC
Confidence            578999999984   79999999999999999988876

>PRK09072 short chain dehydrogenase; Provisional

Probab=92.38  E-value=0.23  Score=41.49  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=32.8

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.++++.|.| -|.||+++++.+...|.+|++.+|+.
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            5789999998 59999999999999999999999864

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.37  E-value=0.23  Score=40.90  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999997 9999999999999999999999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.37  E-value=0.2  Score=40.93  Aligned_cols=36  Identities=36%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.++++.|.|- |.||+.+++.|...|.+|++.+|++
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            46799999984 9999999999998899999999865

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.36  E-value=0.42  Score=41.97  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=40.6

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCC-------CEEEEEcCCCCCC---------Cc-----------ccChhhhcccCcEE
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASH---------SQ-----------VSCQSSGWHCKQVI  205 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG-------~~V~~~~r~~~~~---------~~-----------~~~l~ell~~sD~v  205 (226)
                      .+|+|+|. |.||+.++..|...+       .+|..+|+.....         .+           ..++.+.++.+|+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            36999999 999999999997633       4899999854321         00           23455778889988


Q ss_pred             EEe
Q 027226          206 SIF  208 (226)
Q Consensus       206 ~l~  208 (226)
                      +..
T Consensus        83 I~t   85 (325)
T cd01336          83 ILV   85 (325)
T ss_pred             EEe
Confidence            776

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=92.36  E-value=0.22  Score=41.54  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999986 6899999999999999999998864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.34  E-value=0.17  Score=44.20  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|.|.|.+|...++.++..|+ +|++.+++..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~  205 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPR  205 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence            58999999999999999999999999 6888887643

>PRK12861 malic enzyme; Reviewed

Probab=92.31  E-value=1  Score=43.97  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=72.6

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (226)
Q Consensus        99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-  177 (226)
                      .|++.|- +.     ..+|=-+++.+++.+|-                .+..+.+.+|.+.|.|.-|..+|+.+...|. 
T Consensus       157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHD-DQ-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            6888775 33     44666777777777763                3678999999999999999999999999999 


Q ss_pred             --EEEEEcCCC-----CC---C---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226          178 --KIIATKRSW-----AS---H---------SQVSCQSSGWHCKQVISIFNEKGFSSGE  217 (226)
Q Consensus       178 --~V~~~~r~~-----~~---~---------~~~~~l~ell~~sD~v~l~~~~d~i~~~  217 (226)
                        +++.+|+..     ++   .         ....+|.|+++.+|++.=+...+.+..+
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~S~~g~ft~e  273 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGLSAGGVLKAE  273 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCCCCCCCHH
Confidence              799999643     11   1         2346799999999888776655555443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=92.30  E-value=1.7  Score=37.82  Aligned_cols=59  Identities=15%  Similarity=0.079  Sum_probs=47.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|.+|+++|= +++-+..+..+..||++|....|..-..                   ....++++.++.+|+|...
T Consensus       145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            388999999997 6888888999999999999998743211                   0135778999999999885

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.28  E-value=0.24  Score=43.43  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|++|.|.|- |-||+++++.|..-|.+|++.+|+..
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            46899999994 99999999999999999999988654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.28  E-value=0.17  Score=41.71  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=33.1

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++++++.|.| .|.||+++|+.|...|.+|+.++|+..
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~   39 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE   39 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4679999999 699999999999999999999998754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.26  E-value=0.19  Score=45.82  Aligned_cols=34  Identities=21%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|.|+|.|..|..+|+.|...|.+|.++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6899999999999999999999999999987554

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.25  E-value=0.31  Score=43.55  Aligned_cols=55  Identities=16%  Similarity=0.119  Sum_probs=42.6

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-------CCCEEEEEcCCCCC----------------C-----------CcccChhhhc
Q 027226          154 KTVFILGFGNIGVELAKRLRP-------FGVKIIATKRSWAS----------------H-----------SQVSCQSSGW  199 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-------fG~~V~~~~r~~~~----------------~-----------~~~~~l~ell  199 (226)
                      .+|+|||.|+-|.++|..+..       ||-+|..|.|....                .           .-..++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            589999999999999999974       45799999887631                0           0134567888


Q ss_pred             ccCcEEEEe
Q 027226          200 HCKQVISIF  208 (226)
Q Consensus       200 ~~sD~v~l~  208 (226)
                      ..+|++.+.
T Consensus        92 ~~aDiIvlA  100 (365)
T PTZ00345         92 EDADLLIFV  100 (365)
T ss_pred             hcCCEEEEE
Confidence            889988876

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=92.25  E-value=0.2  Score=46.00  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=32.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -+++.|||-|-||-++|..++.||.+|..+.+...-
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            378999999999999999999999999999887544

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=92.23  E-value=0.21  Score=45.77  Aligned_cols=33  Identities=33%  Similarity=0.508  Sum_probs=27.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHcc-----CCCEEEEEc
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRP-----FGVKIIATK  183 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~a-----fG~~V~~~~  183 (226)
                      ...++|||-|||+||+.++|.+-.     -+++|.+..
T Consensus       125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn  162 (477)
T PRK08289        125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIV  162 (477)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence            557899999999999999998742     578888884

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.18  E-value=0.23  Score=41.41  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=31.4

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcC
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .+.||++.|.|-+   .||+++|+.+...|++|+..++
T Consensus         3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~   40 (256)
T PRK12859          3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW   40 (256)
T ss_pred             CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence            5889999999985   7999999999999999998753

>PRK06500 short chain dehydrogenase; Provisional

Probab=92.18  E-value=0.25  Score=40.62  Aligned_cols=37  Identities=35%  Similarity=0.465  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++++.|...|++|+..+|+.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~   40 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP   40 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence            367899999996 9999999999999999999998863

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=92.17  E-value=0.14  Score=43.93  Aligned_cols=54  Identities=26%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhccc--CcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~--sD~v~l~  208 (226)
                      +|.|+| -|-||+++.+.|+..|.+|++++|..-.-.+...+.+++..  .|+|+..
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~   58 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC   58 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence            689999 69999999999999999999998763332344556677665  4655444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.16  E-value=0.34  Score=44.80  Aligned_cols=60  Identities=20%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----Cc----------------------
Q 027226          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQ----------------------  191 (226)
Q Consensus       149 ~~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~----------------------  191 (226)
                      ..+.|++|+|+|+          .+-...+++.|...|++|.+|||.....     .+                      
T Consensus       320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (473)
T PLN02353        320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ  399 (473)
T ss_pred             cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence            3689999999998          6788999999999999999999974332     10                      


Q ss_pred             ---ccChhhhcccCcEEEEe
Q 027226          192 ---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       192 ---~~~l~ell~~sD~v~l~  208 (226)
                         ..++++.++.+|+++++
T Consensus       400 ~~~~~~~~~a~~~aD~vvi~  419 (473)
T PLN02353        400 VSVVWDAYEATKGAHGICIL  419 (473)
T ss_pred             eeeeCCHHHHhcCCCEEEEC
Confidence               11335788999999999

>PLN02602 lactate dehydrogenase

Probab=92.14  E-value=0.4  Score=42.55  Aligned_cols=34  Identities=18%  Similarity=0.361  Sum_probs=28.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~  187 (226)
                      ++|+|||.|+||..+|-.+...|.  ++..+|....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            699999999999999998875554  7999998653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.14  E-value=0.27  Score=42.13  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +++.|.| .|-||+.+++.|..-|.+|++++|+....               ....++.+++...|++...
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~   71 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHV   71 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEe
Confidence            3788998 59999999999999999999999975431               0123455667777876544

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=92.13  E-value=0.29  Score=40.30  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=37.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .-++.||+|.|+|-|.+|.+=++.+...|++|+.+++...
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~   46 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFE   46 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCcc
Confidence            3578999999999999999999999999999999999873

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.11  E-value=0.22  Score=42.75  Aligned_cols=35  Identities=37%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.| .|-||+.++++|..-|.+|++..|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~   38 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP   38 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            368999999 79999999999999999999888754

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=92.09  E-value=1.8  Score=38.23  Aligned_cols=59  Identities=14%  Similarity=0.025  Sum_probs=47.0

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|-+  ++....+..+..||++|....|..-..                   .-..++++.++.+|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            5889999999976  689999999999999999998843211                   0136678899999998875

>PRK08589 short chain dehydrogenase; Validated

Probab=92.07  E-value=0.25  Score=41.60  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            478999999997 789999999999999999999987

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=92.07  E-value=2.1  Score=37.68  Aligned_cols=59  Identities=14%  Similarity=0.040  Sum_probs=47.2

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|+||+++|=+  ++.+..+..+..||++|....|..-..                   .-..++++.++.+|+|...
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            4789999999975  888899999999999999998852110                   0146678899999999885

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.07  E-value=0.21  Score=43.72  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.+|.|.|.|.||...++.++++|.+|++.++++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~  200 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP  200 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            47999999999999999999999999999988764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.05  E-value=0.27  Score=42.16  Aligned_cols=40  Identities=25%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ....+.++++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            456788999999996 9999999999999999999999874

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.04  E-value=0.21  Score=43.46  Aligned_cols=36  Identities=22%  Similarity=0.215  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.+|.|.|.|.+|...++.++.+|++|++.+++..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~  200 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAA  200 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            489999999999999999999999999999888644

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=92.04  E-value=0.23  Score=43.88  Aligned_cols=57  Identities=14%  Similarity=0.048  Sum_probs=41.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCC--------CEEEEEcCCCC----------------C----CC-------cccChhhhc
Q 027226          155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWA----------------S----HS-------QVSCQSSGW  199 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG--------~~V~~~~r~~~----------------~----~~-------~~~~l~ell  199 (226)
                      +|+|||.|+-|.++|..+..-|        .+|..|.|...                .    ..       -..++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            4899999999999999997544        89999987220                0    00       124678889


Q ss_pred             ccCcEEEEeccC
Q 027226          200 HCKQVISIFNEK  211 (226)
Q Consensus       200 ~~sD~v~l~~~~  211 (226)
                      ..+|++.+.-.+
T Consensus        81 ~~ADiIIlAVPs   92 (342)
T TIGR03376        81 KGADILVFVIPH   92 (342)
T ss_pred             hcCCEEEEECCh
Confidence            999988877333

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK05876 short chain dehydrogenase; Provisional

Probab=92.04  E-value=0.27  Score=41.66  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~   40 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK   40 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999997 78999999999999999999998763

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.22  Score=40.94  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.++++.|.|- |.||+.+|+.+..-|++|+..+|+..
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~   42 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA   42 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467899999985 99999999999999999999988643

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=92.01  E-value=0.27  Score=40.74  Aligned_cols=37  Identities=35%  Similarity=0.533  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.| .|.||+++|++|..-|++|+..+|+.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~   43 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA   43 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999998 57899999999999999999999874

>PRK12367 short chain dehydrogenase; Provisional

Probab=91.99  E-value=0.26  Score=41.17  Aligned_cols=39  Identities=36%  Similarity=0.466  Sum_probs=34.4

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus         9 ~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367          9 QSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             HHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            34678899999987 6899999999999999999998865

>PLN02740 Alcohol dehydrogenase-like

Probab=91.98  E-value=0.21  Score=44.38  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~  233 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP  233 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh
Confidence            358999999999999999999999999 699988764

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=91.97  E-value=0.3  Score=40.79  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.| .|.||+++|+.|..-|++|+..+++..
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~   44 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG   44 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999998 689999999999999999999988654

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.94  E-value=0.53  Score=41.31  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=31.0

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHc--cCCCEEEEEcC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKR  184 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~--afG~~V~~~~r  184 (226)
                      ..++.++|+|+|. |+||..+|..+.  .+.-++..+|+
T Consensus         4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            4567789999999 999999999998  45568999998

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.92  E-value=0.96  Score=41.23  Aligned_cols=61  Identities=20%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             CCccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhh-hcccCcEEEEe
Q 027226          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSS-GWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~e-ll~~sD~v~l~  208 (226)
                      +..+.|++|+|+|+          .+=+..+++.|..-|.+|.+|||.....     .+...+++ .+..+|.++++
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~  385 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVA  385 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEc
Confidence            45689999999999          6778999999999999999999974322     11111223 36788999998

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.92  E-value=0.28  Score=41.16  Aligned_cols=36  Identities=31%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             ccCCCEEEEEc---CChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG---~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|   -+.||+++|+.|...|++|+...|.
T Consensus         3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~   41 (261)
T PRK08690          3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV   41 (261)
T ss_pred             ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            47899999999   4589999999999999999887653

>PRK07589 ornithine cyclodeaminase; Validated

Probab=91.91  E-value=0.23  Score=44.01  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=44.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC--------------CcccChhhhcccCcEEEEec
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH--------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      -++++|+|.|..++.-++.+. -+.. +|..|+|++...              ....+.++.++.||+|+...
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEec
Confidence            489999999999988877554 5566 699999986542              01467889999999999874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=91.90  E-value=0.28  Score=40.77  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+|++.|.| .|.||+.+|++|...|.+|+..+|+.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            457899999998 59999999999999999999998864

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=91.89  E-value=0.3  Score=41.31  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +|.|.|- |.||+.+++.|..-|.+|++..|++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~   34 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS   34 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            3677776 99999999999988999999999864

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06196 oxidoreductase; Provisional

Probab=91.87  E-value=0.27  Score=42.47  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578899999997 78999999999999999999998743

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.85  E-value=0.29  Score=40.22  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.++++.|.| .|.||+++++.|..-|.+|+.++|+.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~   37 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR   37 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            4689999998 58999999999999999999998864

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.85  E-value=0.27  Score=41.29  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++++.|..-|++|+.++|+.
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~   41 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP   41 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            367899999996 8999999999999999999999864

>PRK12862 malic enzyme; Reviewed

Probab=91.84  E-value=1.3  Score=43.47  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (226)
Q Consensus        99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-  177 (226)
                      +|++.|- +.     ..+|=-+++.+++.+|-                .+..+.+.+|.|.|.|.-|-.+|+.+...|. 
T Consensus       161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKL----------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEec-Cc-----ccHHHHHHHHHHHHHHH----------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            5777775 33     44666777777777753                3678999999999999999999999999999 


Q ss_pred             --EEEEEcCCC-----C-C--C---------CcccChhhhcccCcEEEEeccCCccccc
Q 027226          178 --KIIATKRSW-----A-S--H---------SQVSCQSSGWHCKQVISIFNEKGFSSGE  217 (226)
Q Consensus       178 --~V~~~~r~~-----~-~--~---------~~~~~l~ell~~sD~v~l~~~~d~i~~~  217 (226)
                        +++.+|+..     + .  .         ....+|.|+++.+|++.=+...+.+..+
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~~g~~~~~  277 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAGVLKPE  277 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCCCCCCCHH
Confidence              799999642     1 1  1         1345789999999988877666655544

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.83  E-value=0.28  Score=40.37  Aligned_cols=37  Identities=24%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~   39 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA   39 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence            367899999986 8999999999998899999998864

>PLN02427 UDP-apiose/xylose synthase

Probab=91.82  E-value=0.39  Score=42.67  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             CCCccCCCEEEEEc-CChHHHHHHHHHccC-CCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~  186 (226)
                      .+..+..++|.|.| .|-||+.+++.|..- |.+|++++|+.
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            36677888999999 699999999999877 58999999753

>PRK07825 short chain dehydrogenase; Provisional

Probab=91.82  E-value=0.28  Score=41.14  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.|+++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999986 8999999999999999999998864

>PLN02780 ketoreductase/ oxidoreductase

Probab=91.82  E-value=0.69  Score=40.28  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+++.|.|. |.||+++|+.+..-|++|+.++|+.
T Consensus        51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~   87 (320)
T PLN02780         51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP   87 (320)
T ss_pred             ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence            46899999995 6899999999999999999999865

>PRK06114 short chain dehydrogenase; Provisional

Probab=91.81  E-value=0.35  Score=40.17  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.| -|.||+++|+.|...|++|+..+|+.
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~   42 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT   42 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            357899999997 56999999999999999999998864

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.78  E-value=0.26  Score=41.53  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       151 l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.||++.|.|-+   .||+++|+.|..-|++|+..+|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            689999999997   59999999999999999988775

>PRK08017 oxidoreductase; Provisional

Probab=91.78  E-value=0.26  Score=40.68  Aligned_cols=34  Identities=35%  Similarity=0.504  Sum_probs=31.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |++.|.|. |.||+++++.|..-|.+|+..+|+..
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~   37 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD   37 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            68999998 99999999999999999999988753

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.77  E-value=0.23  Score=42.77  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~  185 (226)
                      .++++.|+|.|.||...+..++.+|++ |+++++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~  178 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN  178 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            478899999999999999999999998 5555553

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.76  E-value=0.29  Score=40.67  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.||++.|.|- |.||+++|+.|...|++|+..+|+
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3588999999986 799999999999999999999886

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.74  E-value=0.12  Score=44.50  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=37.5

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      |.......|...+|.|+|+|.+|.++|+-|...|. +|..+|...
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            54444578999999999999999999999999999 588888754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=91.71  E-value=3  Score=38.04  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccC-CCEEEEEcCCCCC-C---C-----------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWAS-H---S-----------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~af-G~~V~~~~r~~~~-~---~-----------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|+||+++|=+   ++....+..+..| ||+|....|..-. .   .           -..++++.++.+|+|...
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~  315 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYAT  315 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999984   8899999988877 9999999885421 1   0           146788999999999885

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=91.69  E-value=0.34  Score=42.64  Aligned_cols=56  Identities=13%  Similarity=0.127  Sum_probs=46.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -++++|||.|..++.-++.++ -|+. +|..|+|++...               ....+.++.++.||+|+-.
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEe
Confidence            479999999999999999887 6676 699999986543               1356778999999999988

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=91.68  E-value=1.9  Score=38.00  Aligned_cols=59  Identities=12%  Similarity=0.037  Sum_probs=47.2

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|-+  ++.+..+..+..||++|....|..-..                   ....++++.++.+|+|...
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            5789999999976  789999999999999999988753111                   0136678899999999886

>PRK11579 putative oxidoreductase; Provisional

Probab=91.67  E-value=0.34  Score=42.65  Aligned_cols=55  Identities=18%  Similarity=0.154  Sum_probs=37.6

Q ss_pred             CEEEEEcCChHHHH-HHHHHcc-CCCEEEE-EcCCCCCC-------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASH-------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~a-fG~~V~~-~~r~~~~~-------~~~~~l~ell~~--sD~v~l~  208 (226)
                      -+|||||+|.||+. .+..++. -++++.+ +|+.....       ..+.++++++..  -|+|++.
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~   71 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIP   71 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEc
Confidence            48999999999985 5665544 4788876 55543210       125789999964  5777766

>PRK07478 short chain dehydrogenase; Provisional

Probab=91.66  E-value=0.25  Score=40.95  Aligned_cols=38  Identities=34%  Similarity=0.403  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|.+|+..+|+.+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~   41 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA   41 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999985 78999999999999999999998643

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=91.64  E-value=0.15  Score=37.53  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             cCChHHHHHHHHHccC----CCEEEEEcCCC---CCC--------CcccChhhhcc--cCcEEEEe
Q 027226          160 GFGNIGVELAKRLRPF----GVKIIATKRSW---ASH--------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       160 G~G~IG~~vA~~l~af----G~~V~~~~r~~---~~~--------~~~~~l~ell~--~sD~v~l~  208 (226)
                      |+|.||+.+++.+...    +++|.++-.+.   ...        ....++++++.  ..|+++=.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999999854    78877765443   111        23567788887  67777655

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.63  E-value=0.3  Score=40.86  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|-   +.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~   43 (256)
T PRK07889          4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR   43 (256)
T ss_pred             cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence            478999999996   7999999999999999999988754

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.63  E-value=0.29  Score=43.21  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.|.|.||..++..++.+|++|++.+.+.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~  217 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS  217 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58899999999999999999999999998876654

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.61  E-value=0.26  Score=43.62  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      -.|.+|.|.|.|.||...+..++.+|+ +|++.+++.
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~  220 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP  220 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            347999999999999999999999999 799988754

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.61  E-value=0.28  Score=41.54  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=32.5

Q ss_pred             CccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.||++.|.|-   +.||+++|+.|..-|++|+...|+
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~   45 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG   45 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence            4577899999998   479999999999999999887664

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.60  E-value=0.36  Score=43.45  Aligned_cols=58  Identities=16%  Similarity=0.022  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~ell~~sD~v~l~  208 (226)
                      ..|++|+|+|+          .+-...+++.|..-|++|.+|||..+..     .-.++++++++.+|++.+.
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISN  366 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEc
Confidence            46899999999          4567899999999999999999975543     1356778899999999988

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.59  E-value=0.31  Score=40.12  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~  168 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD  168 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            457899999999999999999999999999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.57  E-value=0.25  Score=42.81  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  186 (226)
                      .|.+|.|+|.|.+|..++..++.+|++ |++.+++.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~  198 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP  198 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            389999999999999999999999999 99988753

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=91.57  E-value=0.14  Score=41.99  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=43.0

Q ss_pred             EEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEec
Q 027226          156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       156 vgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      |.|+|. |.+|+.+++.|..-|.+|.+..|..+..                 .+.++|.+.++.+|.+.+.-
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            678885 9999999999999999999999976432                 12455777889999987763

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12742 oxidoreductase; Provisional

Probab=91.55  E-value=0.36  Score=39.35  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .+.+|++.|.|- |.||+++|+.|...|++|+...+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            477999999995 89999999999999999987655

>PRK07856 short chain dehydrogenase; Provisional

Probab=91.54  E-value=0.28  Score=40.64  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467999999985 7899999999999999999999875

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=91.54  E-value=0.31  Score=40.47  Aligned_cols=37  Identities=30%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+.++|+.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~   42 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE   42 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            478899999987 7899999999999999999999863

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.54  E-value=0.28  Score=40.01  Aligned_cols=37  Identities=32%  Similarity=0.435  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.++++.|.|- |.||+.+++.+..-|.+|+.++|++.
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            46789999985 99999999999999999999999754

>PRK05872 short chain dehydrogenase; Provisional

Probab=91.51  E-value=0.36  Score=41.34  Aligned_cols=40  Identities=38%  Similarity=0.473  Sum_probs=35.0

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+.||++.|.|- |.||+++|+.+..-|++|+..+|+..
T Consensus         4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (296)
T PRK05872          4 MTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA   44 (296)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35688999999985 88999999999999999999998643

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=91.48  E-value=0.31  Score=42.75  Aligned_cols=40  Identities=33%  Similarity=0.265  Sum_probs=35.3

Q ss_pred             CCCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+++..+++|.|.| .|-||+.+++.|..-|.+|++.+|..
T Consensus         4 ~~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~   44 (353)
T PLN02896          4 EGRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP   44 (353)
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35788899999999 69999999999998899999988753

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.46  E-value=0.32  Score=40.92  Aligned_cols=38  Identities=34%  Similarity=0.410  Sum_probs=34.1

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+++|++.|.|- |.||+++++.|..-|.+|+.++|+.
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~   44 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ   44 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999996 8999999999999999999999864

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=91.44  E-value=0.33  Score=40.48  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA   40 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999986 6899999999999999999999864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.39  E-value=0.33  Score=40.17  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.+..-|++|+.++|+.
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            3578999999986 7899999999998999999999974

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=91.37  E-value=0.33  Score=40.27  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.|- |.||+++|+.|...|++|+..+|+..
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   41 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA   41 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            367899999984 99999999999999999999998654

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.36  E-value=0.27  Score=43.34  Aligned_cols=35  Identities=34%  Similarity=0.523  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .|.+|.|.|.|.||...++.++.+|+ +|++.+++.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~  222 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP  222 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            58999999999999999999999999 799998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08278 short chain dehydrogenase; Provisional

Probab=91.35  E-value=0.36  Score=40.72  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+|++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            46789999998 589999999999999999999998653

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=91.32  E-value=0.66  Score=39.48  Aligned_cols=30  Identities=33%  Similarity=0.509  Sum_probs=25.1

Q ss_pred             EEEEEc-CChHHHHHHHHHcc-CCCEEEE-EcC
Q 027226          155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKR  184 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~a-fG~~V~~-~~r  184 (226)
                      +|+|+| +|++|+.+++.+.. -++++.+ ++|
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~   35 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFER   35 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            799999 79999999999874 5888666 554

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=91.32  E-value=2.6  Score=37.26  Aligned_cols=60  Identities=10%  Similarity=-0.004  Sum_probs=47.4

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC---CCC----------------cccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA---SHS----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~---~~~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      ..+.|++|+++|= .++....+..+..||++|....|..-   ...                ...++++.++.+|+|..-
T Consensus       150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~  229 (338)
T PRK02255        150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD  229 (338)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            3589999999997 57888888889999999999988531   110                136788999999999883

>PRK05086 malate dehydrogenase; Provisional

Probab=91.32  E-value=0.56  Score=40.91  Aligned_cols=34  Identities=32%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHH---ccCCCEEEEEcCCCC
Q 027226          154 KTVFILGF-GNIGVELAKRL---RPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l---~afG~~V~~~~r~~~  187 (226)
                      ++|+|+|. |.||+++|..+   ..++..+..+++...
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~   38 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV   38 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence            47999999 99999999777   345668888887543

>PRK05993 short chain dehydrogenase; Provisional

Probab=91.31  E-value=0.32  Score=41.08  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+|++.|.|- |.||+++|+.|..-|.+|+..+|+..
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~   39 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE   39 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3689999997 99999999999999999999998753

>PRK07063 short chain dehydrogenase; Provisional

Probab=91.29  E-value=0.29  Score=40.65  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~   41 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA   41 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999984 7999999999999999999998853

>PRK08226 short chain dehydrogenase; Provisional

Probab=91.29  E-value=0.35  Score=40.22  Aligned_cols=37  Identities=32%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.++++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus         3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~   40 (263)
T PRK08226          3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP   40 (263)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            36789999997 78899999999999999999999864

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=91.27  E-value=0.36  Score=40.26  Aligned_cols=37  Identities=32%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+...++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   41 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS   41 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4688999999986 789999999999999999887553

>PRK09242 tropinone reductase; Provisional

Probab=91.27  E-value=0.35  Score=40.12  Aligned_cols=37  Identities=27%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++++++...|++|+..+|+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~   43 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA   43 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999985 8999999999999999999998864

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.26  E-value=0.33  Score=41.92  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      ++|+|+|.|.+|..+|..+...|. +|..+|+...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            589999999999999999986554 9999998543

>PRK07035 short chain dehydrogenase; Provisional

Probab=91.26  E-value=0.36  Score=39.87  Aligned_cols=37  Identities=32%  Similarity=0.494  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.| -|.||+++++.|..-|++|+..+|+.
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~   42 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL   42 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57889999998 68999999999999999999999864

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.25  E-value=0.32  Score=40.23  Aligned_cols=37  Identities=30%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+.+++.|..-|.+|+..+|.+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            467899999987 9999999999999999999998875

>PLN02240 UDP-glucose 4-epimerase

Probab=91.24  E-value=0.38  Score=41.91  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=31.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|+++++.
T Consensus         2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~   38 (352)
T PLN02240          2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL   38 (352)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999997 5999999999999889999999764

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.22  E-value=0.33  Score=40.68  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .+.+|++.|.|-   +.||+++|++|...|++|+..++
T Consensus         3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~   40 (260)
T PRK06997          3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV   40 (260)
T ss_pred             ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence            368999999994   68999999999999999988754

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=91.21  E-value=1.4  Score=43.07  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (226)
Q Consensus        99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-  177 (226)
                      +|++.|- +.     ..+|=-+++.+++.+|-                .+..+.+.++.|.|.|.-|-.+|+.+...|+ 
T Consensus       153 ~ip~f~D-D~-----~GTa~v~lA~l~na~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  210 (752)
T PRK07232        153 DIPVFHD-DQ-----HGTAIISAAALLNALEL----------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAK  210 (752)
T ss_pred             CCCeecc-cc-----chHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence            5777664 22     44566777777777753                3678999999999999999999999999999 


Q ss_pred             --EEEEEcCCC-----C-CC-----------CcccChhhhcccCcEEEEeccCCccccc
Q 027226          178 --KIIATKRSW-----A-SH-----------SQVSCQSSGWHCKQVISIFNEKGFSSGE  217 (226)
Q Consensus       178 --~V~~~~r~~-----~-~~-----------~~~~~l~ell~~sD~v~l~~~~d~i~~~  217 (226)
                        +++.+|+..     + ..           ....+|.|+++.+|++.=+...+.+..+
T Consensus       211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~~g~~~~~  269 (752)
T PRK07232        211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSAAGVLTPE  269 (752)
T ss_pred             cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCCCCCCCHH
Confidence              799888753     1 11           1346789999999988877655554443

>PRK07577 short chain dehydrogenase; Provisional

Probab=91.20  E-value=0.4  Score=39.03  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+|++.|.|- |.||+.+|+.+..-|++|+..+|+...
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~   39 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID   39 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4688999986 889999999999999999999987544

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.19  E-value=0.35  Score=39.53  Aligned_cols=37  Identities=30%  Similarity=0.480  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEE-cCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIAT-KRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~-~r~~  186 (226)
                      .+.+|++.|.|- |.||+++|+.+..-|++|+.. +|+.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~   40 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE   40 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence            467899999985 999999999999889999988 8764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.16  E-value=0.24  Score=39.37  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      +|+|+|.|.+|..+|+.|...|. ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999998899 499988864

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=91.16  E-value=0.93  Score=46.00  Aligned_cols=68  Identities=21%  Similarity=0.149  Sum_probs=54.9

Q ss_pred             CCCCCC-CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C-------------------------
Q 027226          141 KKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S-------------------------  190 (226)
Q Consensus       141 ~~w~~~-~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~-------------------------  190 (226)
                      ..|..+ +...-.|++|+|||-|.-|-+.|..|.-.|-.|..|.|+-+..    +                         
T Consensus      1772 egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1772 EGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred             hcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCce
Confidence            347544 4567789999999999999999999999999999999986554    0                         


Q ss_pred             --------cccChhhhcccCcEEEEe
Q 027226          191 --------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       191 --------~~~~l~ell~~sD~v~l~  208 (226)
                              +..++|++..+-|.+++.
T Consensus      1852 f~tn~eigk~vs~d~l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1852 FVTNTEIGKHVSLDELKKENDAIVLA 1877 (2142)
T ss_pred             EEeeccccccccHHHHhhccCeEEEE
Confidence                    245678888888888776

>PRK06198 short chain dehydrogenase; Provisional

Probab=91.12  E-value=0.26  Score=40.92  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVK-IIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~-V~~~~r~~  186 (226)
                      ..+.+|++.|.|- |.||+.+++.|...|.+ |+.++|+.
T Consensus         2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~   41 (260)
T PRK06198          2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA   41 (260)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence            3578899999995 89999999999999999 99999864

>PRK06139 short chain dehydrogenase; Provisional

Probab=91.04  E-value=0.35  Score=42.39  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=34.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+|++.|.|. |.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578899999998 7999999999999999999999864

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=91.03  E-value=0.38  Score=40.23  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .+.||++.|.|-   +.||+++|+.+..-|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence            468999999997   48999999999999999977654

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=91.00  E-value=2.5  Score=36.85  Aligned_cols=59  Identities=19%  Similarity=0.111  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCC-EEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~-~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|.++|=   +++....+..+..||+ +|....|..-..        ....++++.++.+|++...
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~  224 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL  224 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence            378999999998   5999999999999999 999988853221        1136788999999999885

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.00  E-value=0.37  Score=40.61  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC-----------CEEEEEcCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG-----------VKIIATKRS  185 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG-----------~~V~~~~r~  185 (226)
                      +..+|.|||.|.+|..+++.|...|           .+++.+|..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            5689999999999999999998653           388888874

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=90.98  E-value=0.28  Score=43.51  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=25.1

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-----CCCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRP-----FGVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-----fG~~V~~~~r  184 (226)
                      .+|||=|||+|||.+.|.+-.     -+++|.+.+-
T Consensus         4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd   39 (361)
T PTZ00434          4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVD   39 (361)
T ss_pred             eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeC
Confidence            489999999999999998653     2578888754

>PRK08303 short chain dehydrogenase; Provisional

Probab=90.92  E-value=0.44  Score=41.20  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=33.8

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~   42 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST   42 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            45889999999985 699999999999999999998863

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.91  E-value=0.39  Score=40.14  Aligned_cols=38  Identities=18%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.++++.|.|-+ .||+++++.|..-|++|+..+|+..
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~   45 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES   45 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4779999999865 6999999999999999999999753

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.89  E-value=0.39  Score=39.93  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.| -|.||+++|++|..-|++|+.++|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            47899999998 67999999999999999999988753

>PRK12829 short chain dehydrogenase; Provisional

Probab=90.88  E-value=0.33  Score=40.21  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.++++.|.|- |.||+.+++.|...|.+|+..+|+.
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~   45 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE   45 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3478899999985 9999999999999999999999864

>PRK06940 short chain dehydrogenase; Provisional

Probab=90.88  E-value=0.42  Score=40.46  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=29.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|++.|-|.|.||+++|+.|. -|.+|+..+|+.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~   34 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE   34 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence            588999999999999999996 799999999864

>PRK06194 hypothetical protein; Provisional

Probab=90.88  E-value=0.39  Score=40.53  Aligned_cols=37  Identities=22%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.++++.|.|- |.||+++|+.|..-|++|+.++|+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~   40 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ   40 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            467899999985 8999999999999999999999863

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=90.87  E-value=0.39  Score=41.71  Aligned_cols=34  Identities=35%  Similarity=0.509  Sum_probs=31.4

Q ss_pred             CCccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEE
Q 027226          148 GETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIA  181 (226)
Q Consensus       148 ~~~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~  181 (226)
                      +.+|.||++.|-|-   ..||.++|+.|..-|++|+.
T Consensus         4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~   40 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV   40 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence            35699999999999   78999999999999999988

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=90.86  E-value=0.38  Score=35.67  Aligned_cols=32  Identities=31%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             EEEEEc-CChHHHHHHHHHc-cCCCEEEE-EcCCC
Q 027226          155 TVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSW  186 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~r~~  186 (226)
                      +|+|+| .|.+|+++.++|. ...+++.. ++++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            699999 9999999999997 56677555 44443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.84  E-value=0.3  Score=43.48  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.|.|.||...++.++++|++|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58999999999999999999999999999987653

>PRK14851 hypothetical protein; Provisional

Probab=90.83  E-value=0.18  Score=48.53  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR  184 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r  184 (226)
                      |.......|++++|+|+|+|.+|..+|..|...|. +++.+|.
T Consensus        33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~   75 (679)
T PRK14851         33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF   75 (679)
T ss_pred             cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence            43334578999999999999999999999998888 6777775

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.83  E-value=0.3  Score=42.94  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~  186 (226)
                      .|++|.|.|.|.||+.++..++++|++ |++.+++.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~  211 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD  211 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            479999999999999999999999995 99887754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.83  E-value=0.2  Score=47.88  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...|-|+|+|++|+.+|+.|+..|.+++..|.+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~  434 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD  434 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence            46899999999999999999999999999998754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.80  E-value=0.33  Score=44.89  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~  187 (226)
                      .+|+|+|+|.+|..+|..|...  |.+|+++|....
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            4799999999999999999854  799999998643

>PRK06182 short chain dehydrogenase; Validated

Probab=90.79  E-value=0.41  Score=40.18  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .++++.|.|- |.||+++|+.|..-|++|++.+|+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   37 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV   37 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999995 8999999999999999999999864

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.74  E-value=0.41  Score=41.20  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|.+|.|.|.|.+|+.+++.++.+|++|++.+++.
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~  196 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP  196 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            446899999999999999999999999999988764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=90.73  E-value=0.39  Score=42.41  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~  221 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP  221 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            47999999999999999999999999 699988764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK06720 hypothetical protein; Provisional

Probab=90.71  E-value=0.45  Score=37.62  Aligned_cols=37  Identities=35%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.|+++.|.|-+. ||+++|+.+..-|++|+.++++.
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~   50 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ   50 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999865 99999999999999999998764

>PRK10637 cysG siroheme synthase; Provisional

Probab=90.69  E-value=0.47  Score=43.63  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=36.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.|+||+|.|||-|.++.+=++.|..+|++|+.+++...+
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~   47 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIP   47 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence            5799999999999999999999999999999999886544

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.66  E-value=0.43  Score=43.45  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=31.3

Q ss_pred             cCC-CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCC
Q 027226          151 LLG-KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (226)
Q Consensus       151 l~g-ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~  186 (226)
                      +.+ ++|.|+|+|.+|...++.|...  |++|.++|...
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~   42 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE   42 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            455 7899999999999999999877  68999999754

>PLN02527 aspartate carbamoyltransferase

Probab=90.60  E-value=5.6  Score=34.62  Aligned_cols=59  Identities=20%  Similarity=-0.019  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccC-CCEEEEEcCCCCCC---C------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASH---S------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~af-G~~V~~~~r~~~~~---~------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|-+   +.....+..+..| |++|....|..-..   .            -..++++.++.+|+|...
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  225 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT  225 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence            4789999999965   6888889888877 99999988854211   0            135778999999999885

>PLN02253 xanthoxin dehydrogenase

Probab=90.58  E-value=0.48  Score=39.89  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=34.0

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        13 ~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~   52 (280)
T PLN02253         13 SQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD   52 (280)
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35678999999985 7899999999999999999998753

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=90.58  E-value=0.42  Score=40.93  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|.+|.|.|.|.+|+.+++.++.+|.+|++.+++.
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~  189 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHS  189 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            457999999999999999999999999999887753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=90.56  E-value=0.4  Score=43.45  Aligned_cols=39  Identities=36%  Similarity=0.501  Sum_probs=34.5

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...++||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus       173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~  212 (406)
T PRK07424        173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS  212 (406)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34678999999987 8999999999999999999998764

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=90.55  E-value=0.35  Score=42.74  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEEEEc
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~  183 (226)
                      .+|||+|+|+||+..++.+.. -+.++.++.
T Consensus         6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~   36 (338)
T PLN02358          6 IRIGINGFGRIGRLVARVVLQRDDVELVAVN   36 (338)
T ss_pred             eEEEEEeecHHHHHHHHHHhhCCCcEEEEEe
Confidence            499999999999999998764 367887754

>PRK06914 short chain dehydrogenase; Provisional

Probab=90.54  E-value=0.38  Score=40.43  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=31.6

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .++++.|.| .|.||+++++.|..-|++|+.++|++.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~   38 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE   38 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            578899988 589999999999999999999988643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.53  E-value=0.4  Score=45.25  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=33.1

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..-.|+++.|.|. |.||+++++.|...|++|+++.|+.
T Consensus        76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3456799999996 9999999999999999999998853

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=90.51  E-value=0.59  Score=41.00  Aligned_cols=54  Identities=15%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCC-------EEEEEcCCCCCC---------Ccc-----------cChhhhcccCcEEE
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH---------SQV-----------SCQSSGWHCKQVIS  206 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~-------~V~~~~r~~~~~---------~~~-----------~~l~ell~~sD~v~  206 (226)
                      +|+|+|. |+||..+|..+...|.       .+..+|+.....         ...           .+..+.++.+|+++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999876554       588999854431         011           13357888899998


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      +.
T Consensus        81 it   82 (324)
T TIGR01758        81 LV   82 (324)
T ss_pred             Ec
Confidence            87

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.50  E-value=0.84  Score=43.74  Aligned_cols=47  Identities=19%  Similarity=0.138  Sum_probs=38.1

Q ss_pred             CCCCCCC-CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          141 KKLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       141 ~~w~~~~-~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..|.... .....+++|.|||-|..|...|..|+..|.+|+.|++...
T Consensus       297 ~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        297 MGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             hCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            3465432 2234699999999999999999999999999999998754

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=90.49  E-value=0.33  Score=42.26  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -++|||||.|-+|..+|..+..=|.+|..+|++.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            4799999999999999999999669999999983

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=90.39  E-value=0.34  Score=42.76  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             CEEEEEcCChHHHHHHHHHc-c--CCCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLR-P--FGVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~-a--fG~~V~~~~r  184 (226)
                      .+|||=|||+||+.+.|.+. .  .+++|.+.+.
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind   35 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND   35 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhccCCCeEEEEecC
Confidence            38999999999999999854 2  4788888876

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=90.38  E-value=0.43  Score=41.42  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~  186 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD  186 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35799999998 9999999999999999999987753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.36  E-value=0.44  Score=41.88  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|.+|.|.|. |.+|..+++.++.+|++|++.+++.
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~  193 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS  193 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            35899999999 9999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		3e-12
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		2e-11
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		8e-11
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-08
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		2e-07
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		2e-07
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		9e-07
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-06
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		1e-06
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-06
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		1e-06
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		7e-06
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		7e-06
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		2e-05
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-05
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		2e-05
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-05
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-05
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		4e-05
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-04
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		2e-04
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-04
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-04
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		3e-04
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-04
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		3e-04
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		8e-04
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		9e-04

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 11/128 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 71  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 173 RPFGVKII 180
           + FG+K I
Sbjct: 185 QSFGMKTI 192

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 15/148 (10%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G ++    + A
Sbjct: 46  IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 169
           E T+ L++ L+RK       +R    +    + TG    E+L GK V ILG G IG  +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSS 197
           +RL PFGVK+      W+ H +V+ +  
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKE 186

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 55  NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
           NY + VV++  ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG  T   
Sbjct: 46  NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 170
            S  ELTI LM+   RK   M  ++   K G+     G  L GKT+ I+GFG IG ++  
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 171 RLRPFGVKIIA 181
                G+K++A
Sbjct: 160 IANAMGMKVLA 170

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K I  + +G + +D++A    GIKV   P  VT    + AE+ + L+LG  R+  E   
Sbjct: 68  IKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGEK 124
Query: 137 AIEQKKLGVP-------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
            I  +    P        GE L  KT+ I GFG+IG  LAKR + F + I       AS 
Sbjct: 125 MIRTRSW--PGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS 182
Query: 190 SQVSCQSSGWH 200
           S  +   + +H
Sbjct: 183 SDEASYQATFH 193

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 47  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 164 GAYVVA 169

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 48  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 176 GVKIIA 181
           G  ++A
Sbjct: 165 GAYVVA 170

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           + +I   GVG + VD+  A R  I V   PG +   A   A+L I L L +LR+  +   
Sbjct: 94  LGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXLAVLRRVGDGDR 150
Query: 137 AIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------W 186
            + + +      +P G +  GK + +LG G IG  LA R   FG  +    RS      W
Sbjct: 151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDW 210
Query: 187 ASH 189
            +H
Sbjct: 211 IAH 213

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 58  LCVVKTMRLDSNCISRANQ-MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D  AA   GIKV   P DV  +A  C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--C 131
Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+   L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 172 LRPFGVKIIATKRSWASHS 190
            R FG+ I    R+  SH+
Sbjct: 192 ARGFGLAIHYHNRTRLSHA 210

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV+
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 178

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + VDI AA   GI V  IP   +      A+ TI 
Sbjct: 56  TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ ++GFG  G  +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 174 PFGVKII 180
            FG  +I
Sbjct: 173 AFGFSVI 179

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 70  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 183 RLVPFNPK 190

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 69  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 171 RLRPFGVK 178
           RL PF  K
Sbjct: 182 RLVPFNPK 189

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P     +    A+ T+ 
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA---ASVEETADSTLC 131
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ I+G G +G  +A R +
Sbjct: 132 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 191
Query: 174 PFGVKII 180
            FG  ++
Sbjct: 192 AFGFNVL 198

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P     +    A+ T+ 
Sbjct: 72  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA---ASVEETADSTLC 128
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ I+G G +G  +A R +
Sbjct: 129 HILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 188
Query: 174 PFGVKII 180
            FG  ++
Sbjct: 189 AFGFNVL 195

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQK 141
           VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++  +   + +
Sbjct: 77  VGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE 133
Query: 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           K G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 134 KAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P     +    A+ T+ 
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA---ASVEETADSTLC 131
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ I+G G +G  +A R +
Sbjct: 132 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAK 191
Query: 174 PFGVKII 180
            FG  ++
Sbjct: 192 AFGFNVL 198

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116
Query: 130 K----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           K      +MR  +  KK  +  G  L GKT+ I+GFG IG ++AK     G+ I+
Sbjct: 117 KIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 67  DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
           D+  I    +++++  F VGL+ VD+      G++V   P  +T +    A+L I L+L 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDD---VADLAIGLILA 134
Query: 127 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           +LR+  E    + +   K G         GK V I+G G IG+ +A+R   F   I    
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 184 RS 185
           RS
Sbjct: 195 RS 196

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P     +    A+ T+ 
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA---ASVEETADSTLC 131
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ I+G   +G  +A R +
Sbjct: 132 HILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAK 191
Query: 174 PFGVKII 180
            FG  ++
Sbjct: 192 AFGFNVL 198

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223
Query: 185 SWASHSQVSCQSSGWHCKQ 203
                S     +  WH  +
Sbjct: 224 HRLPESVEKELNLTWHATR 242

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
Query: 185 SWASHSQVSCQSSGWHCKQ 203
                S     +  WH  +
Sbjct: 223 HRLPESVEKELNLTWHATR 241

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223
Query: 185 SWASHSQVSCQSSGWHCKQ 203
                S     +  WH  +
Sbjct: 224 HRLPESVEKELNLTWHATR 242

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           +L    +S+  ++KLI    VG + +D++   + GI V  IP     +  S AE T   +
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 125 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 179
           L L+++    R+    KKL       +L +     T+ ++G G IG  +A     FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 180 I 180
           +
Sbjct: 168 L 168

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 182 TKR 184
           T R
Sbjct: 221 TDR 223

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 182 TKR 184
           T R
Sbjct: 220 TDR 222

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT 110
           R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +T
Sbjct: 54  RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLT 99

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +
Sbjct: 64  HLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGEL 120
Query: 125 LGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI-- 179
           L LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +  
Sbjct: 121 LLLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYF 179
Query: 180 --IATKRSWASHSQVSCQSSGWHCKQVISI 207
             I  K    + +QV   S   +   V+S+
Sbjct: 180 YDIENKLPLGNATQVQHLSDLLNMSDVVSL 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	3e-28
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	7e-28
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	4e-27
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	7e-27
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-26
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-26
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-26
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	3e-26
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	2e-25
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-25
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	2e-25
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	6e-25
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-25
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	7e-25
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-24
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	3e-24
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-24
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-24
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	8e-24
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-23
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	2e-23
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-23
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-22
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-21
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	2e-21
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-21
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	3e-21
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	3e-21
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	3e-21
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	4e-20
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-14
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-12
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	8e-06
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	6e-05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	2e-04
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	3e-04
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	4e-04
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	4e-04
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	5e-04

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  109 bits (274), Expect = 3e-28
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
             + V    D PD      + +  + + +      L    I++A  +KL +  G+G + V
Sbjct: 68  HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ +A    + VA +      N+ S AE  + ++L L+R          +        V 
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
               L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  107 bits (269), Expect = 7e-28
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 15/156 (9%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            Q  V    + PD      I + H+ +        + +  I +A  +KL++  G+G + +
Sbjct: 41  HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ AA   G+ VA + G    N  S AE  +  +L L+R        + +          
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
               L GKT+  +G G IG  L +RL+PFG  ++  
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH 193

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  104 bits (261), Expect = 4e-27
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 42  DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 101
            +V   D+ +V A          R+ +  +++  ++K I     GL+ +   +     + 
Sbjct: 22  KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 159
           VA   G    NA + AE  + L+L   ++  +    +++      V     + G+ V +L
Sbjct: 75  VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130

Query: 160 GFGNIGVELAKRLRPFGVKIIATKRS 185
           G G IG  + K L   G ++    R+
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRT 156

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  104 bits (261), Expect = 7e-27
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 20/181 (11%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 65
            N+ +VL             ++ LQ+   +QV         ++   + +    +V++  +
Sbjct: 24  ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           + ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++
Sbjct: 79  VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
            L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192

Query: 181 A 181
            
Sbjct: 193 G 193

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  103 bits (258), Expect = 1e-26
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 22/181 (12%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 64
               + L   P          + L+    IQVD    +   ++ ++I NY + VV  +T 
Sbjct: 3   IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG    +  S  ELTI LM
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113

Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +   RK        +  I +K  G+   E L GKT+ I+GFG IG ++       G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169

Query: 181 A 181
           A
Sbjct: 170 A 170

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  103 bits (260), Expect = 2e-26
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 17/157 (10%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            ++      +  +      I +  + +        +    I +A ++KL++  GVG + +
Sbjct: 39  HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98

Query: 91  DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 144
           D++   + G  I V  + G    N  S AE  +  ML L+R        I          
Sbjct: 99  DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155

Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                 + GKT+  +G G IG  + +RL PF  K + 
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL 192

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  102 bits (256), Expect = 3e-26
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          + L++   ++V      D   + +++ +    +V++  ++   
Sbjct: 5   KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           K       +      +K+     G  L GKT+ I+GFG IG ++AK     G+ I+ 
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILL 170

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  102 bits (257), Expect = 2e-25
 Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 37  PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 92
             ++V  V       +   +      +V++   +D+  ++ A ++K++ + GVGL+ VD+
Sbjct: 23  DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 147
           +AAT  G+ V   P     N  S AE  + L+L   R+      ++     ++      +
Sbjct: 83  DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           G  + GKTV ++G G IG  +A+R+  FG  ++A
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA 170

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  100 bits (252), Expect = 2e-25
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 17/167 (10%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVG 86
           E L+ Y    V+++          VI  +  + V  T ++    +  A ++K+I     G
Sbjct: 17  EELKKYA--DVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---- 142
            + +D+  AT+ GI V ++ G     + + AE T+ L++ L+RK +     I + +    
Sbjct: 75  YDNIDLEEATKRGIYVTKVSG---LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 131

Query: 143 ----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
                G    E+L GK V ILG G IG  +A+RL PFGVK+    R 
Sbjct: 132 AKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRH 178

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 36  YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 90
           Y +   D         V+  + L           ++  +      + K+I     G++ +
Sbjct: 4   YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150
           D+N      +  +         + S AE    L+L   +   E    ++           
Sbjct: 64  DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           L GK + ILG+G IG  +A   + FG+++IA  RS
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRS 154

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score = 99.2 bits (248), Expect = 6e-25
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 40  QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            V         +    V+       +  T+ L    + +   +++I++ G G + +DI +
Sbjct: 44  TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 145
           A   GI V  +P     +    A+ T+  +L L R         ++     ++EQ +   
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                + G+T+ I+G G +G  +A R + FG  ++ 
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLF 196

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 98.8 bits (247), Expect = 7e-25
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +
Sbjct: 41  KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 160
           T    + A+L   L+L   R   +    +   +              G  + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157

Query: 161 FGNIGVELAKRLRPFGVKIIATKRS 185
            G IG  +AKR + F ++I+   R+
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT 182

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 98.9 bits (247), Expect = 7e-25
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 9/175 (5%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
           + VL      P      +    ++       V  +D   +             L +    
Sbjct: 2   SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
             NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +
Sbjct: 58  PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114

Query: 133 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
              +     +      T  TL G+ + I G G IG  LA +    G+ +I    +
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT 169

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score = 98.0 bits (245), Expect = 1e-24
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L      R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +
Sbjct: 39  KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 164
           T    + A+LT+ L+L + R+  E              P    G  L G T+ ++G G I
Sbjct: 99  T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155

Query: 165 GVELAKRLRPFGVKIIATKRS 185
           G  +AKR   FG++++   R+
Sbjct: 156 GQAVAKRALAFGMRVVYHART 176

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score = 96.9 bits (242), Expect = 3e-24
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 25  SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 76
             +      +        D+  + D        ++ A +  + +      +   +    +
Sbjct: 8   VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67

Query: 77  M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           +  K I+    G + +D   A   G  +A +P     +  + AEL +   + LLR     
Sbjct: 68  LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124

Query: 135 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                +K          + +   TV ++G G IG   A+     G  +I 
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG 174

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score = 96.5 bits (241), Expect = 5e-24
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 28  YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 81
           + KE+   +  ++V+       P+ +A       + V + +   +  +          + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + + 
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132

Query: 142 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
            L      G  +  + V ++G G+IG    + +  FG K+I 
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT 174

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score = 96.5 bits (241), Expect = 5e-24
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 25  SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 75
           +     +Y + +       ++        +       +  +  ++T    +    +  A 
Sbjct: 8   ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67

Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
            +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 136 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             ++       G   G+ L  +TV ++G G+IG    K  + FG K+IA
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA 173

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score = 96.9 bits (242), Expect = 8e-24
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           E L+      ++    +   +     I + H   +  +T  L  + I+ A ++  I  F 
Sbjct: 19  ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           +G   VD++AA + GI V   P     N  S AEL I  +L LLR       +    +  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +   G        GK + I+G+G+IG +L       G+ +  
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF 173

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 94.9 bits (237), Expect = 2e-23
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 10/142 (7%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 108
           +   +   L +    +     I R    +K I  + +G + +D++A    GIKV   P  
Sbjct: 40  ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 163
           VT    + AE+ + L+LG  R+  E    I  +      P    GE L  KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156

Query: 164 IGVELAKRLRPFGVKIIATKRS 185
           IG  LAKR + F + I      
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTH 178

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 53  IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
             +   +      R+D++ +    ++++I     G +  D++A T  G+ +  +P     
Sbjct: 43  CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 167
                AEL I L +GL R        +   K     P   G  L   TV  LG G IG+ 
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159

Query: 168 LAKRLRPFGVKIIATKRS 185
           +A RL+ +G  +   +  
Sbjct: 160 MADRLQGWGATLQYHEAK 177

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score = 95.7 bits (239), Expect = 2e-23
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           EY ++     V  +P +         I++ H+  +  +T +L     + AN++  +  F 
Sbjct: 30  EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           VG   V++ AA + GI V   P     N  S AEL I  ++ L+R    +         E
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           +  +G      + GKT+ I+G+GNIG ++       G+ +  
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY 184

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
              L +  + +   + +I   GVG + VD+  A R  I V   PG +       A+L I 
Sbjct: 80  GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136

Query: 123 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           LML +LR+  +    +R         +P G +  GK + +LG G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 179 IIATKRS 185
           +    RS
Sbjct: 197 VRYWNRS 203

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
               D+  I    +++++  F VGL+ VD+      G++V   P  +T      A+L I 
Sbjct: 74  NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130

Query: 123 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           L+L +LR+  E    + +   K           GK V I+G G IG+ +A+R   F   I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 180 IATKRS 185
               RS
Sbjct: 191 SYFSRS 196

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 85
           L     ++V    +  V  +   +A+   L ++  +T R+    + R  ++K+I Q G  
Sbjct: 23  LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81

Query: 86  ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 135
                  +D+ A T  G+ V    G    +  + AELT  L++   R+       ++   
Sbjct: 82  SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137

Query: 136 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                +           G  L G+T+ I G+G IG  +A   R FG+ ++ 
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV 188

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 14/151 (9%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
             D   +I        ++   +++ IS   + +K+    G G + +D++A    G+  A 
Sbjct: 49  YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 155
             G       + ++L +YL+L + R  +   R A                 +     G  
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165

Query: 156 VFILGFGNIGVELAKR-LRPFGVKIIATKRS 185
           +  +G G I  E+A++ +   G+K++    +
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVA 196

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 31  EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 81
             L      +V+    SD P         +A  H L  + +  +D   +  A   +K+I 
Sbjct: 23  VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E    ++  
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138

Query: 142 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
                 P    G  L   TV I+G G IG  +A+RL+PFGV+  
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF 182

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 58  LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D+ AA   GIKV   P  ++    +C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131

Query: 117 AELTIYLMLGLLRKQNE-MRMAIEQK-KLGVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+ + L+L   R+  E  RM          PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 172 LRPFGVKIIATKRS 185
            R FG+ I    R+
Sbjct: 192 ARGFGLAIHYHNRT 205

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
           Y +E        +V  VP   +  + + +    +V+++ +++ + +S    +  +     
Sbjct: 14  YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + VD     + GI  +  PG    NA +  E     +L L  +               
Sbjct: 71  GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G +L  +T+ I+G GN+G  L  RL   G++ + 
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL 147

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 28  YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
               +        +  +P  +     +A   + +V+++  +    ++  + ++ +    +
Sbjct: 11  VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D++     GI  +  PG    NA    +  +  +L +   +              
Sbjct: 68  GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
             G  L  +T  ++G G +G  L + LR  G K++ 
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV 144

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 5/173 (2%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
            R L       A +    +   + P +++         + +      ++         ++
Sbjct: 5   QRTLLLLSQDNAHYERLLK-AAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLA 63

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
           +AN++        G++ + ++A  R   ++  + G         +E     +L L+R+  
Sbjct: 64  KANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLP 119

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             R   +Q+       + L G+T+ ILG G+IG  +A   + FG+K++   RS
Sbjct: 120 LYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS 172

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 15/177 (8%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 73
            ++F  P F A+  +     +  P  +V    + D           +V    ++   +  
Sbjct: 5   EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56

Query: 74  ANQMKLIMQFGVGLEGVDINAATR-----CGIKVARIPGDVTGNAASCAELTIYLMLGLL 128
             ++K +   G G++ +              I + R+     G      E  +  +L   
Sbjct: 57  GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQM--QEYAVSQVLHWF 114

Query: 129 RKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           R+ ++ +    Q         T    +V I+G G +G ++A+ L+ +G  +    RS
Sbjct: 115 RRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS 171

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
           MAI+       T  T+ G  V +LG G +G+ +A++    G K+    R     +++
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            T+   G G     L++ L P G +II T R+
Sbjct: 6   GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             + I G G++G+ELA+RL   G ++   +RS
Sbjct: 4   SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           ++  G    ++L G  V + G GN+   L K+L   G K++ T
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
              G+ +   L G TV + G G +G  LA      G +++  
Sbjct: 166 AHRGLGS---LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 18/66 (27%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISI 207
           G  L G  V + G G +G  +A      G++++A          V+  S G        +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA----------VAT-SMGG-------M 254

Query: 208 FNEKGF 213
           +  +G 
Sbjct: 255 YAPEGL 260

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISI 207
              + GKTV I G GN+G   A  L   G K+IA          VS   +G         
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA----------VSD-INGV-------A 246

Query: 208 FNEKGF 213
           + ++G 
Sbjct: 247 YRKEGL 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 36/229 (15%), Positives = 67/229 (29%), Gaps = 75/229 (32%)

Query: 29  TKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 88
           T+ Y++     Q D   + +   V A Y++  ++        +      K ++  GV   
Sbjct: 109 TRMYIE-----QRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-- 159

Query: 89  GVDINAATRCG-----IKVAR-------IPGDV----TGNAASCAELTIYLMLGLLRK-- 130
           G         G     + V         +   +      N  +  E  + ++  LL +  
Sbjct: 160 G--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQID 210

Query: 131 --------------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170
                               Q E+R  ++ K         LL     +L      V+ AK
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLL-----VLL----NVQNAK 257

Query: 171 RLRPFGV--KIIATKRSWASHSQVSCQSSGWHCKQVISIFNEKGFSSGE 217
               F +  KI+ T R      QV+   S      +    +    +  E
Sbjct: 258 AWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHHSMTLTPDE 302

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 18/66 (27%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISI 207
           G  L    + I GFGN G  LAK +   G K+I           +S  ++G        +
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG----------ISD-ANGG-------L 257

Query: 208 FNEKGF 213
           +N  G 
Sbjct: 258 YNPDGL 263

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 18/66 (27%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISI 207
           G  + G  V I GFGN+G   A+     G +++A          V    +G        +
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA----------VQD-HTGT-------V 271

Query: 208 FNEKGF 213
           +NE G 
Sbjct: 272 YNEAGI 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.88
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.78
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.78
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.51
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.42
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.36
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.3
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.28
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.27
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.14
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.09
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.97
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.69
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.66
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.51
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.44
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.4
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.24
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.23
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.21
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.12
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.1
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.03
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.02
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.97
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.96
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.96
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	97.2
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.95
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.93
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.92
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.91
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.89
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.88
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.85
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.83
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.81
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.81
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.78
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.77
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.75
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.71
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.64
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.63
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.6
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.59
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.58
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.58
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.57
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.56
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.54
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.53
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.53
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.52
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.52
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.5
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.49
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.48
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.47
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.46
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.45
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.45
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.44
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.43
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.43
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.41
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.4
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.39
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.39
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.37
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.33
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.33
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.32
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.31
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.29
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.25
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.2
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.16
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.13
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.11
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.09
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.08
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.07
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.06
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.99
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.95
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.95
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.94
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.89
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.87
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.86
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.86
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.83
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.82
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.82
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.8
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.76
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.75
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.74
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.7
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.69
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.69
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.68
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.66
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.65
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.64
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.63
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.61
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.59
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.58
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.55
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.54
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.54
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.53
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.5
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.46
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.46
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.45
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.45
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.43
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.4
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	96.38
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.35
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.31
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.24
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.24
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.23
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.21
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.18
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.17
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.15
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.14
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.12
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.1
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.1
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.04
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.03
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.03
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.02
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.02
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.02
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.01
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.0
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.0
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.0
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.97
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.97
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.95
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.94
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.94
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.92
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.9
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.86
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.86
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.82
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.82
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.79
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.79
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.75
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.72
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.71
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	95.7
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.68
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.68
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.66
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.64
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.64
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.61
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.61
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.59
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.58
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.55
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.52
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.51
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.49
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.46
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.42
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.41
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.41
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.41
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	95.37
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.37
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.37
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.36
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.36
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.33
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.29
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.26
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.25
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.24
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.23
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.23
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.17
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.12
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.12
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.11
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.1
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.09
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.07
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.07
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.05
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.04
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	95.04
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.03
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.03
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.03
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.0
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.97
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.96
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.95
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.93
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.92
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.91
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	94.9
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.89
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.88
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.88
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	94.85
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	94.84
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.84
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.84
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.83
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.81
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.79
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.79
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.78
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	94.77
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.77
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	94.76
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.76
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	94.75
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.74
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.73
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.73
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	94.71
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	94.7
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	94.67
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.64
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.63
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.61
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.61
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.59
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.51
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	94.51
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	94.48
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.43
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.42
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.41
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	94.41
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.4
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.38
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.38
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	94.37
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.37
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	94.36
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.35
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.34
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	94.34
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.33
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	94.32
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.31
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.31
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.3
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.28
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.28
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.27
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.27
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	94.27
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.26
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.25
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	94.25
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	94.22
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	94.22
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.21
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.21
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	94.21
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	94.19
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.19
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	94.19
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.17
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.15
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.13
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.11
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.11
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	94.1
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.1
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.08
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.08
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.08
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.08
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.07
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.05
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.04
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.04
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	94.03
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.03
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.02
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.01
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.97
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	93.95
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	93.95
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	93.94
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	93.94
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	93.9
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	93.88
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	93.87
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.86
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	93.84
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.84
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	93.82
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.8
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	93.8
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.76
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.76
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	93.76
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	93.73
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.72
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	93.72
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.72
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	93.7
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.7
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.69
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.68
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	93.68
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.66
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.66
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.63
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	93.63
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.62
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.62
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.61
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	93.59
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.58
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	93.58
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.57
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.57
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	93.55
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.55
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.54
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	93.52
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	93.51
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.5
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.5
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	93.49
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.48
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.48
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	93.48
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.47
1ydw_A	362	AX110P-like protein; structural genomics, protein	93.47
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	93.47
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.46
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	93.45
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.45
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	93.45
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	93.44
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	93.43
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	93.42
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.41
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	93.4
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.39
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	93.38
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	93.38
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	93.38
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.35
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	93.35
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	93.34
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.33
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	93.33
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.33
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.31
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	93.31
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.3
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	93.29
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	93.28
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	93.27
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.26
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.25
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	93.23
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.23
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.23
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.22
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	93.22
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.21
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.18
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.18
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	93.16
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.16
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	93.16
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.14
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	93.14
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.14
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.13
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.11
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.1
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.1
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	93.1
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	93.09
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	93.09
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	93.08
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	93.08
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.06
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	93.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.06
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.05
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.04
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.03
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	93.01
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.01
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	92.99
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.98
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	92.98
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.96
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	92.96
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.96
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	92.93
4had_A	350	Probable oxidoreductase protein; structural genomi	92.92
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	92.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.9
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.88
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	92.87
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	92.86
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.86
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	92.85
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.85
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.84
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	92.82
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	92.8
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	92.79
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.79
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	92.79
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.78
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	92.78
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.77
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	92.77
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	92.77
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	92.76
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	92.76
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.75
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.72
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.71
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.7
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	92.69
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.68
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.67

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=3.2e-41  Score=293.85  Aligned_cols=204  Identities=21%  Similarity=0.278  Sum_probs=170.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCC-hhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCcc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~i   90 (226)
                      |+|+++....++ .++.++.++.+ +.++...+..+ ..+.++++|+++++ ..++++++++++|+||||++.|+|+|||
T Consensus         1 Mkil~~~~~~~~-~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQED-VPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCTTH-HHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCccc-CHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            789998654332 34444444433 33443333222 24567889998875 4679999999999999999999999999


Q ss_pred             chhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---CCCccCCCEEEEEcCChHHHH
Q 027226           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVE  167 (226)
Q Consensus        91 d~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~gktvgIvG~G~IG~~  167 (226)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|++..+.+.++++.|...   .+.+++||||||+|+|+||++
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999999   89999999999999999999999999999988653   578999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCCC-----CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          168 LAKRLRPFGVKIIATKRSWASH-----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       168 vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +|+++++|||+|++|||+.++.     ....+|++++++||+|++|     +|..+|+.+++++
T Consensus       156 va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~  219 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISL  219 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHH
T ss_pred             HHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhh
Confidence            9999999999999999986643     3567899999999999999     7888999888764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1e-40  Score=289.13  Aligned_cols=203  Identities=17%  Similarity=0.222  Sum_probs=174.1

Q ss_pred             CCCceEEEeCCCCCCchhhHHHH-HhcCCCeEEecCC-CCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccC
Q 027226           10 KNITRVLFCGPHFPASHNYTKEY-LQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      ..+|||+++.+..   ..+.+.+ .+.+|++++.... .+++.+.++++|+++++. .+++++++++|+||||++.|+|+
T Consensus         3 ~~~mkili~~~~~---~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~l~~~~~Lk~I~~~~~G~   78 (324)
T 3hg7_A            3 LSQRTLLLLSQDN---AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP-ARAKPLLAKANKLSWFQSTYAGV   78 (324)
T ss_dssp             -CCEEEEEESTTH---HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH-HHHGGGGGGCTTCCEEEESSSCC
T ss_pred             ccccEEEEecCCC---HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC-CCCHHHHhhCCCceEEEECCCCC
Confidence            3458999998763   4566666 5678999887653 345678899999998753 45678899999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHH
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~  167 (226)
                      |++|.+++. +||+|+|+||+   ++.+||||+++++|++.|+++.+.+.++++.|....+.+++|+||||||+|+||++
T Consensus        79 d~id~~~~~-~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~  154 (324)
T 3hg7_A           79 DVLLDARCR-RDYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQH  154 (324)
T ss_dssp             GGGSCTTSC-CSSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHH
T ss_pred             CccChHHHh-CCEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHH
Confidence            999988765 59999999998   89999999999999999999999999999999887788999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          168 LAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       168 vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +|++|++|||+|++|+|+++..      ....++++++++||+|++|     .+..+++.+.++
T Consensus       155 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~  218 (324)
T 3hg7_A          155 IAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFE  218 (324)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTT
T ss_pred             HHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHh
Confidence            9999999999999999987543      2356899999999999999     556777777665

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.8e-40  Score=287.86  Aligned_cols=201  Identities=18%  Similarity=0.264  Sum_probs=171.4

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHH-hcCCCceEEEecCccCCcc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGV   90 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l-~~~~~Lk~I~~~~aG~d~i   90 (226)
                      ||||+++.+..+   ++.+.+.+.+|++++...+. ...+.++++|+++++..++ ++++ +++|+||||++.|+|+|++
T Consensus         1 m~kil~~~~~~~---~~~~~L~~~~~~~~~~~~~~-~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKP---EQLQQLQTTYPDWTFKDAAA-VTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCH---HHHHHHHHHCTTCEEEETTS-CCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCH---HHHHHHHhhCCCeEEecCCc-cChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            589999987753   44556666778777654332 3345678999998876556 8888 6799999999999999999


Q ss_pred             chhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHH-HHHHHhCCCCCC-CCCccCCCEEEEEcCChHHHHH
Q 027226           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM-RMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVEL  168 (226)
Q Consensus        91 d~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~~~w~~~-~~~~l~gktvgIvG~G~IG~~v  168 (226)
                      |.+++.++||.|+|+||+   ++.+||||+++++|++.|++..+ .+.++++.|... .+.+++||||||||+|+||+++
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999998   89999999999999999999999 999999999876 4889999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          169 AKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       169 A~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      |++|++|||+|++|+|+++..      ....++++++++||+|++|     .+..+++.+.++
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~  215 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQ  215 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHH
T ss_pred             HHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHh
Confidence            999999999999999987653      2346899999999999999     567788777664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=4e-40  Score=287.63  Aligned_cols=204  Identities=25%  Similarity=0.382  Sum_probs=170.4

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec----CCCCChhhhcCCceEEEEc-CCCCCHHHHhcC-CCceEEEec
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQF   83 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~-~~Lk~I~~~   83 (226)
                      +.+|||+++.+..++   ..+.+.+.+ ++.+..    .+.+++.+.++++|+++++ ..++++++++++ |+||||++.
T Consensus        26 ~~~~kvlv~~~~~~~---~~~~l~~~~-~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~  101 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPA---IEAELRQRF-DLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATL  101 (345)
T ss_dssp             -CCCEEEESSCCCHH---HHHHHHHHS-EEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEES
T ss_pred             CCCCEEEEeCCCCHH---HHHHHHccC-CEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEc
Confidence            456899999877543   333343333 444432    2345667789999999986 468999999997 799999999


Q ss_pred             CccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-----CCCccCCCEEEE
Q 027226           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFI  158 (226)
Q Consensus        84 ~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~gktvgI  158 (226)
                      |+|+|+||++++.++||+|+|+||+   ++.+||||+++++|++.|++..+++.+++|.|...     .+.+++||||||
T Consensus       102 ~~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGI  178 (345)
T 4g2n_A          102 SVGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGI  178 (345)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEE
T ss_pred             CCcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEE
Confidence            9999999999999999999999999   89999999999999999999999999999999742     468999999999


Q ss_pred             EcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----Ccc-cChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH-----SQV-SCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       159 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~-~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+|+||+++|++|++|||+|++|||++...     ... .++++++++||+|++|     .+..+++.+.++
T Consensus       179 IGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~  251 (345)
T 4g2n_A          179 FGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA  251 (345)
T ss_dssp             ESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHH
T ss_pred             EEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHh
Confidence            9999999999999999999999999986432     223 4899999999999999     466777776654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=2.7e-39  Score=281.33  Aligned_cols=202  Identities=17%  Similarity=0.215  Sum_probs=169.0

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEec----CCCCChhhhcCCceEEEE-cCCCCCHHHHhcCCCceEEEecCcc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVG   86 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~~~Lk~I~~~~aG   86 (226)
                      +++|+++.+..+   +..+ .++...++.+..    .+.+++.+.++++|++++ +..++++++++++|+||||++.|+|
T Consensus         2 ~~kvlv~~~~~~---~~~~-~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            2 LPKLVITHRVHE---EILQ-LLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCEEEECSCCCH---HHHH-HHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCEEEEecCCCH---HHHH-HHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            478999987643   2233 334333443321    133456778899999998 5678999999999999999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCC
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFG  162 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G  162 (226)
                      +|++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.+++|.|..    ..+.+++|+||||||+|
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCS
T ss_pred             ccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeC
Confidence            9999999999999999999999   8999999999999999999999999999999862    24689999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +||+++|+++++|||+|++|||++...       ....+++++++.||++++|     .+..+++.++++
T Consensus       155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  224 (330)
T 4e5n_A          155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLA  224 (330)
T ss_dssp             HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHh
Confidence            999999999999999999999987332       2356899999999999999     466777766654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=4.2e-39  Score=278.37  Aligned_cols=199  Identities=17%  Similarity=0.223  Sum_probs=170.7

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCcc-
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV-   90 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~i-   90 (226)
                      .|||+++.+..+ ...|.+.+.+.+|++++..++.+    ..+++|++++|  .++++++++ |+||||++.++|+|++ 
T Consensus         3 ~mkil~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~----~~~~ad~~i~~--~~~~~~l~~-~~Lk~I~~~~aG~d~i~   74 (315)
T 3pp8_A            3 AMEIIFYHPTFN-AAWWVNALEKALPHARVREWKVG----DNNPADYALVW--QPPVEMLAG-RRLKAVFVLGAGVDAIL   74 (315)
T ss_dssp             CEEEEEECSSSC-HHHHHHHHHHHSTTEEEEECCTT----CCSCCSEEEES--SCCHHHHTT-CCCSEEEESSSCCHHHH
T ss_pred             ceEEEEEcCCCc-hHHHHHHHHHHCCCCEEEecCCC----CccCcEEEEEC--CCCHHHhCC-CCceEEEECCEeccccc
Confidence            389999887643 46788888889999998776543    34689999987  468999999 9999999999999999 


Q ss_pred             c-hhH---HHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHH
Q 027226           91 D-INA---ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (226)
Q Consensus        91 d-~~~---~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~  166 (226)
                      | +++   +.++||+|+|++++  +++.+||||+++++|++.|+++.+.+.++++.|....+++++|+||||||+|+||+
T Consensus        75 d~~~a~~~~~~~gi~v~~~~~~--~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~  152 (315)
T 3pp8_A           75 SKLNAHPEMLDASIPLFRLEDT--GMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGA  152 (315)
T ss_dssp             HHHHHCTTSSCTTSCEEEC--C--CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHH
T ss_pred             chhhhhhhhhcCCCEEEEcCCC--CccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHH
Confidence            7 765   67889999999987  35799999999999999999999999999999987778999999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCCC--C----cccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          167 ELAKRLRPFGVKIIATKRSWASH--S----QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       167 ~vA~~l~afG~~V~~~~r~~~~~--~----~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ++|+++++|||+|++|+|+++..  .    ...+|++++++||+|++|     .+..+++.+.++
T Consensus       153 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~  217 (315)
T 3pp8_A          153 KVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLD  217 (315)
T ss_dssp             HHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHT
T ss_pred             HHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHh
Confidence            99999999999999999987643  1    225799999999999999     567788777665

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=4.5e-39  Score=286.22  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=171.4

Q ss_pred             CCCCCCCCceEEEeCCCCCCchhhHHHHHhc-CCCeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEE
Q 027226            5 ARSSDKNITRVLFCGPHFPASHNYTKEYLQN-YPSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLI   80 (226)
Q Consensus         5 ~~~~~~~~~~Ilv~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I   80 (226)
                      ..|.++++|||++..+..+..   .+.+.+. +.++++..  .+++++.+.++++|++++. ..++++++++++|+||+|
T Consensus         8 ~~~~~~~~~kIl~~~~i~~~~---~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I   84 (416)
T 3k5p_A            8 RLSLSRDRINVLLLEGISQTA---VEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAV   84 (416)
T ss_dssp             ----CGGGSCEEECSCCCHHH---HHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEE
T ss_pred             ccCCCCCCcEEEEECCCCHHH---HHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEE
Confidence            445556678999998775432   2333332 33555432  2445677889999988764 467999999999999999


Q ss_pred             EecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEE
Q 027226           81 MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFI  158 (226)
Q Consensus        81 ~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgI  158 (226)
                      ++.++|+|+||++++.++||+|+|+||+   ++.+||||+++++|++.|+++.+.+.+++|.|...  .+.+++||||||
T Consensus        85 ~~~~~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGI  161 (416)
T 3k5p_A           85 GCFSVGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGI  161 (416)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEE
T ss_pred             EECccccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEE
Confidence            9999999999999999999999999998   89999999999999999999999999999999764  468999999999


Q ss_pred             EcCChHHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       159 vG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+|+||+.+|+++++|||+|++|||+++..    ....++++++++||++++|     .+..+++.+.++
T Consensus       162 IGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~  232 (416)
T 3k5p_A          162 VGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLR  232 (416)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHH
T ss_pred             EeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHh
Confidence            9999999999999999999999999986543    2356899999999999999     466788776654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5e-39  Score=280.48  Aligned_cols=204  Identities=17%  Similarity=0.271  Sum_probs=170.1

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecC---CCCChhhhcCCceEEEEc-CCCCCHH-HHhcCC--CceEEEecC
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSN-CISRAN--QMKLIMQFG   84 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~adv~i~~-~~~~~~~-~l~~~~--~Lk~I~~~~   84 (226)
                      ||||+++... +...++++++.+.+ ++++...   ..+++.+.++++|++++. ..+++++ +++++|  +||||++.|
T Consensus         1 Mmki~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNVS-PIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESCC-GGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEecC-cccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            5899999844 44566777776544 4444322   235677889999999886 4789999 999885  699999999


Q ss_pred             ccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHH-hCCCCC---CCCCccCCCEEEEEc
Q 027226           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGV---PTGETLLGKTVFILG  160 (226)
Q Consensus        85 aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~~~w~~---~~~~~l~gktvgIvG  160 (226)
                      +|+|+||++++.++||.|+|+||+   ++++||||+++++|++.|++..+.+.++ +|.|..   ..+.+++|+||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999999   8899999999999999999999999999 887543   367899999999999


Q ss_pred             CChHHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          161 FGNIGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       161 ~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +|+||+.+|+++++|||+|++|||+++..    ....++++++++||+|++|     .+..+++.+.++
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~  224 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLK  224 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHH
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHh
Confidence            99999999999999999999999987643    3456899999999999999     556777776654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.7e-39  Score=278.38  Aligned_cols=203  Identities=23%  Similarity=0.311  Sum_probs=160.0

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccC
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      .+++|+++.+..++   ..+.+.+.+ ++....  .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+
T Consensus        29 ~~~~vl~~~~~~~~---~~~~L~~~~-~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~  104 (340)
T 4dgs_A           29 VKPDLLLVEPMMPF---VMDELQRNY-SVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGT  104 (340)
T ss_dssp             ----CEECSCCCHH---HHHTHHHHS-CCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCC
T ss_pred             CCCEEEEECCCCHH---HHHHHhcCC-cEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCc
Confidence            44679999877543   233333333 332211  1234455666899999885 4679999999999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC----CCCccCCCEEEEEcCCh
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGN  163 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvgIvG~G~  163 (226)
                      |+||++++.++||.|+|+||+   ++++||||+++++|++.|+++.+++.+++|.|...    .+.+++|+||||||+|+
T Consensus       105 d~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~  181 (340)
T 4dgs_A          105 DKVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQ  181 (340)
T ss_dssp             TTBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSH
T ss_pred             cccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCH
Confidence            999999999999999999998   89999999999999999999999999999999753    36899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCCC---cccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASHS---QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~~---~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+++|+++++|||+|++|+|++....   ...++++++++||+|++|     .+..+++.+.++
T Consensus       182 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~  246 (340)
T 4dgs_A          182 IGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQ  246 (340)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHh
Confidence            999999999999999999999876542   246899999999999999     456677666553

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=4.2e-38  Score=280.31  Aligned_cols=204  Identities=22%  Similarity=0.238  Sum_probs=167.6

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCC-CeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCcc
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYP-SIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVG   86 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG   86 (226)
                      +||||++..+..+.   ..+.+.+... ++.+..  .+++++.+.++++|++++. ..++++++++++|+||||++.++|
T Consensus         3 ~~~kil~~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   79 (404)
T 1sc6_A            3 DKIKFLLVEGVHQK---ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG   79 (404)
T ss_dssp             SSCCEEECSCCCHH---HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC
T ss_pred             CceEEEEeCCCCHH---HHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcc
Confidence            46799998765332   2333333222 444432  2445667789999998764 457999999999999999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChH
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNI  164 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~I  164 (226)
                      +|+||++++.++||.|+|+||+   |+.+||||+++++|++.|+++.+.+.+++|.|...  .+.+++||||||||+|+|
T Consensus        80 ~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~I  156 (404)
T 1sc6_A           80 TNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHI  156 (404)
T ss_dssp             CTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHH
T ss_pred             cCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHH
Confidence            9999999999999999999998   89999999999999999999999999999999753  468999999999999999


Q ss_pred             HHHHHHHHccCCCEEEEEcCCCCCC---C-cccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          165 GVELAKRLRPFGVKIIATKRSWASH---S-QVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       165 G~~vA~~l~afG~~V~~~~r~~~~~---~-~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      |+.+|+++++|||+|++|||++...   . ...++++++++||++++|     .+.++++.+.++
T Consensus       157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  221 (404)
T 1sc6_A          157 GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS  221 (404)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHh
Confidence            9999999999999999999976543   1 234899999999999999     566777766554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.7e-38  Score=273.89  Aligned_cols=203  Identities=27%  Similarity=0.405  Sum_probs=165.8

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCc
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGV   85 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~a   85 (226)
                      +.|++|++..+..+.   .. +.++.. ++++..   .+.+++.+.++++|+++++. .++++++++++|+||||++.++
T Consensus        24 ~~~~~vli~~~~~~~---~~-~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~   98 (335)
T 2g76_A           24 ANLRKVLISDSLDPC---CR-KILQDG-GLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGT   98 (335)
T ss_dssp             --CCEEEECSCCCHH---HH-HHHHHH-TCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSS
T ss_pred             ccceEEEEcCCCCHH---HH-HHHHhC-CCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCC
Confidence            455688887765322   22 233222 233322   23346677889999998863 4689999999999999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCCh
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGN  163 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~  163 (226)
                      |+|++|++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|...  .+.+++|+||||||+|.
T Consensus        99 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~  175 (335)
T 2g76_A           99 GVDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGR  175 (335)
T ss_dssp             SCTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSH
T ss_pred             CcchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECH
Confidence            99999999999999999999998   89999999999999999999999999999999743  46799999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+.+|+++++|||+|++|||+....      ....+++++++.+|++++|     .+.++++.+.++
T Consensus       176 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  243 (335)
T 2g76_A          176 IGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFA  243 (335)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHh
Confidence            99999999999999999999986532      2345899999999999999     466777766554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=9.4e-38  Score=272.12  Aligned_cols=204  Identities=16%  Similarity=0.241  Sum_probs=169.6

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEecCc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~a   85 (226)
                      ||||++.... +....+.+.+.+.+|++++...+   .+++.+.++++|+++++ ..++++++++++|+  ||||++.++
T Consensus         1 mmkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (333)
T 1j4a_A            1 MTKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   79 (333)
T ss_dssp             -CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             CcEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCc
Confidence            3788887543 23344566666667776664332   34667788999999986 45789999999987  999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCCh
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGN  163 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~  163 (226)
                      |+|+||++++.++||.|+|+||+   ++++||||+++++|++.|++..+++.++++.|..  ..+.+++|+||||||+|+
T Consensus        80 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~  156 (333)
T 1j4a_A           80 GVDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGH  156 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSH
T ss_pred             ccccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCH
Confidence            99999999999999999999998   8899999999999999999999999999998853  356899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC----Cccc-ChhhhcccCcEEEEe-----ccCCccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH----SQVS-CQSSGWHCKQVISIF-----NEKGFSSGEYC  219 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~-~l~ell~~sD~v~l~-----~~~d~i~~~~~  219 (226)
                      ||+++|+++++|||+|++|+|++...    .... +++++++.+|++++|     .+.++++.+.+
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l  222 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESI  222 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHH
Confidence            99999999999999999999987532    2233 799999999999999     45666765554

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.1e-37  Score=269.89  Aligned_cols=203  Identities=17%  Similarity=0.251  Sum_probs=167.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecC---CCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEecCcc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~aG   86 (226)
                      |||++..... ....+.+.+.+.+ ++++...   ..+++.+.++++|+++++ ..++++++++++|+  ||||++.++|
T Consensus         1 Mkil~~~~~~-~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGARV-DEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCCT-TTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEeccc-cCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            5788865332 2244555554433 3344322   235667778999999886 45789999999988  9999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCC---CCCCCccCCCEEEEEcCCh
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGN  163 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~---~~~~~~l~gktvgIvG~G~  163 (226)
                      +|++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.+++|.|.   ...+.++.|+||||||+|+
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   889999999999999999999999999999983   3457899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+.+|+++++|||+|++|||++...    ....+++++++.+|++++|     .+.++++.++++
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~  221 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN  221 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHh
Confidence            99999999999999999999987643    2345799999999999999     466777665553

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.2e-38  Score=270.05  Aligned_cols=201  Identities=23%  Similarity=0.325  Sum_probs=165.9

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEcCC-CCCHHHHhcCCCceEEEecCccC
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGL   87 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~~~-~~~~~~l~~~~~Lk~I~~~~aG~   87 (226)
                      +|+|++..+..   ....+.+.+ . ++++..   .+.+++.+.++++|+++++.. ++++++++++|+||||++.++|+
T Consensus         3 ~~~il~~~~~~---~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPLH---EKAIQVLKD-A-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCCC---HHHHHHHHH-T-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCCC---HHHHHHHHh-C-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            47899987543   222333333 2 344432   233456777899999988644 58999999999999999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCChHH
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~IG  165 (226)
                      |++|++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|..  ..+.++.|+||||||+|+||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999998   8999999999999999999999999999999974  35689999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          166 VELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       166 ~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +.+|+++++|||+|++|+|++...      ....+++++++.+|++++|     .+.++++.++++
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~  220 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLK  220 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHH
T ss_pred             HHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHh
Confidence            999999999999999999987542      2345789999999999999     356677655543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.9e-37  Score=265.00  Aligned_cols=199  Identities=26%  Similarity=0.381  Sum_probs=165.4

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCC
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      |+|++..+..   ....+.+.+.  ++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||++.++|+|
T Consensus         6 mkil~~~~~~---~~~~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   80 (313)
T 2ekl_A            6 VKALITDPID---EILIKTLREK--GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLD   80 (313)
T ss_dssp             CEEEECSCCC---HHHHHHHHHT--TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCT
T ss_pred             eEEEEECCCC---HHHHHHHHhC--CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCC
Confidence            6899887543   2233333332  233322   2334567778999998874 45789999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHH
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~v  168 (226)
                      ++|.+++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|....+.++.|+||||||+|+||+.+
T Consensus        81 ~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~  157 (313)
T 2ekl_A           81 NIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV  157 (313)
T ss_dssp             TBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH
T ss_pred             ccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHH
Confidence            99999999999999999999   899999999999999999999999999999997556789999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccc
Q 027226          169 AKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYC  219 (226)
Q Consensus       169 A~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~  219 (226)
                      |+++++|||+|++|||++...      ....+++++++.+|++++|     .+..+++.+.+
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l  219 (313)
T 2ekl_A          158 GIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQF  219 (313)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHH
T ss_pred             HHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHH
Confidence            999999999999999987542      2345789999999999999     35566765554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2e-36  Score=264.95  Aligned_cols=171  Identities=26%  Similarity=0.373  Sum_probs=152.7

Q ss_pred             CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (226)
Q Consensus        47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~  123 (226)
                      +++.+.++++|++++..   .++++++++++|+||||++.|+|+|+||++++.++||+|+|+||+   ++.+||||++++
T Consensus        54 ~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~---~~~~vAE~~~~l  130 (351)
T 3jtm_A           54 CELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELMR  130 (351)
T ss_dssp             SHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCc---CchHHHHHHHHH
Confidence            46778899999998742   358999999999999999999999999999999999999999999   899999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------Cc-
Q 027226          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQ-  191 (226)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~-  191 (226)
                      +|++.|++..+++.+++|.|..    ..+.+|+|+||||||+|+||+++|++|++|||+|++|+|++...       .. 
T Consensus       131 ~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~  210 (351)
T 3jtm_A          131 ILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF  210 (351)
T ss_dssp             HHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEE
T ss_pred             HHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeE
Confidence            9999999999999999999974    24679999999999999999999999999999999999986432       22 


Q ss_pred             ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ..++++++++||+|++|     .+..+++.+.++
T Consensus       211 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~  244 (351)
T 3jtm_A          211 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIG  244 (351)
T ss_dssp             CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHH
T ss_pred             cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHh
Confidence            35899999999999999     566677776654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=8.4e-37  Score=265.92  Aligned_cols=203  Identities=16%  Similarity=0.222  Sum_probs=167.3

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecC----CCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEecCc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~--Lk~I~~~~a   85 (226)
                      |||+++.... ....+++.+.+.+ ++++...    +.+++.+.++++|+++++ ..++++++++++|+  ||||++.++
T Consensus         1 mki~~~~~~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVRD-VELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCCT-TTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecCc-cCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            5788875432 2244555554444 4444332    224566778999999986 45789999999998  999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CCCCccCCCEEEEEcCC
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  162 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvgIvG~G  162 (226)
                      |+|++|++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.+++|.|..   ..+.++.|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999998   8899999999999999999999999999999853   35689999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +||+.+|+++++|||+|++|||++...    ....+++++++.+|++++|     .+.++++.+.++
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~  222 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLK  222 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHh
Confidence            999999999999999999999987643    2345799999999999999     456777665554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.2e-36  Score=263.84  Aligned_cols=201  Identities=22%  Similarity=0.290  Sum_probs=164.3

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecC----CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCC-ceEEEecCc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQ-MKLIMQFGV   85 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~-Lk~I~~~~a   85 (226)
                      |++|++..+..   ....+. ++...++++...    +.+++.+.++++|+++++. .++++++++++|+ ||||++.++
T Consensus         1 m~~vl~~~~~~---~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~   76 (320)
T 1gdh_A            1 KKKILITWPLP---EAAMAR-ARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (320)
T ss_dssp             CCEEEESSCCC---HHHHHH-HHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CcEEEEcCCCC---HHHHHH-HHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCc
Confidence            36788876542   222333 333335554332    2245677789999998864 4789999999999 999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCEEEEEc
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILG  160 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvgIvG  160 (226)
                      |+|++|++++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|..     ..+.++.|+||||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  153 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG  153 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             ccccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEEC
Confidence            99999999999999999999999   8999999999999999999999999999999962     246799999999999


Q ss_pred             CChHHHHHHHHHccCCCEEEEEcC-CCCCC------Cccc-ChhhhcccCcEEEEe-----ccCCccccccc
Q 027226          161 FGNIGVELAKRLRPFGVKIIATKR-SWASH------SQVS-CQSSGWHCKQVISIF-----NEKGFSSGEYC  219 (226)
Q Consensus       161 ~G~IG~~vA~~l~afG~~V~~~~r-~~~~~------~~~~-~l~ell~~sD~v~l~-----~~~d~i~~~~~  219 (226)
                      +|+||+.+|+++++|||+|++||| ++...      .... +++++++.+|+|++|     .+.++++.+.+
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l  225 (320)
T 1gdh_A          154 FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATI  225 (320)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHH
Confidence            999999999999999999999999 76532      2233 789999999999999     35566665444

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.8e-37  Score=269.07  Aligned_cols=202  Identities=20%  Similarity=0.264  Sum_probs=165.2

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCC-----CCChhhhcCCceEEEEc--CCCCCHHHHhcCCCceEEEecCc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK--TMRLDSNCISRANQMKLIMQFGV   85 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~adv~i~~--~~~~~~~~l~~~~~Lk~I~~~~a   85 (226)
                      |||++.+....... ..+.+ +.+++.++..++     .+++.+.++++|+++++  ..++++++++++|+||+|+..++
T Consensus         3 mki~~~d~~~~~~~-~~~~~-~~l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDAVR-KLDCF-SLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCCGG-GSGGG-GGGTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCccccch-hhhhh-hhhcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            79999876643311 11111 122334444332     24567889999999983  46899999999999999999999


Q ss_pred             cC----CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC------------CCC
Q 027226           86 GL----EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------------TGE  149 (226)
Q Consensus        86 G~----d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~------------~~~  149 (226)
                      |+    |+||++++.++||.|+|+||+ .   .+||||+++++|++.|+++.+.+.+++|.|...            .+.
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            99    999999999999999999997 4   899999999999999999999999999999752            368


Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------Ccc-cChhhhcccCcEEEEe-----ccCCccccc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQV-SCQSSGWHCKQVISIF-----NEKGFSSGE  217 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~-~~l~ell~~sD~v~l~-----~~~d~i~~~  217 (226)
                      +++|+||||||+|.||+++|+++++|||+|++|||+.+..      ... .++++++++||+|++|     .+..+++.+
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~  236 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHH
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHH
Confidence            9999999999999999999999999999999999975321      223 4899999999999999     466777777


Q ss_pred             ccc
Q 027226          218 YCS  220 (226)
Q Consensus       218 ~~~  220 (226)
                      +++
T Consensus       237 ~l~  239 (352)
T 3gg9_A          237 DLT  239 (352)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            664

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-36  Score=262.38  Aligned_cols=202  Identities=23%  Similarity=0.288  Sum_probs=165.0

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecC---CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCC
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      |+|+++.+..+..   .+.+.+...++.+...   +.+++.+.++++|+++++. .++++++++++|+||||++.++|+|
T Consensus         1 ~~vl~~~~~~~~~---~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   77 (311)
T 2cuk_A            1 MRVLVTRTLPGKA---LDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVD   77 (311)
T ss_dssp             CEEEESSCCSSST---THHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCT
T ss_pred             CEEEEeCCCCHHH---HHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCcc
Confidence            5788876654332   2333332124433222   2345667789999998753 4789999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCEEEEEcCCh
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGN  163 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvgIvG~G~  163 (226)
                      ++|.+++.++||.|+|+||+   ++.+||||+++++|++.|+++.+++.++++.|..     ..+.++.|+||||||+|+
T Consensus        78 ~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           78 HVDLEAARERGIRVTHTPGV---LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             TBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             ccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999   8999999999999999999999999999999963     136799999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          164 IGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       164 IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ||+.+|+++++|||+|++|+|++... ....+++++++.+|++++|     .+..+++.+.++
T Consensus       155 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~  217 (311)
T 2cuk_A          155 IGQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLF  217 (311)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHh
Confidence            99999999999999999999987643 3456899999999999999     355666644443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.1e-36  Score=267.54  Aligned_cols=205  Identities=18%  Similarity=0.226  Sum_probs=158.3

Q ss_pred             CCceEEEeCCCCCC-----chhhHHHHHhcCCCeEEe-cCCCCChh-hhcCCceEEEEcCCCCCHHHHhcCCCceEEEec
Q 027226           11 NITRVLFCGPHFPA-----SHNYTKEYLQNYPSIQVD-VVPISDVP-DVIANYHLCVVKTMRLDSNCISRANQMKLIMQF   83 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~   83 (226)
                      +.+++++..+....     ..+..+.+.+.+ ++... ..+.+++. +.+.++++++.. .++++++++++|+||||+..
T Consensus        26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~~-~v~~~~~~~~~e~~~~~~~~~~~i~~~-~~i~~~~l~~~p~Lk~I~~~  103 (365)
T 4hy3_A           26 TERPLAISAPEPRSLDLIFSDEARAALHSKY-EIVEADPENIAGLGDDILGRARYIIGQ-PPLSAETLARMPALRSILNV  103 (365)
T ss_dssp             --CCEEEEECTTSCHHHHCCHHHHHHHHHHS-EEEECCGGGGGGSCTTHHHHEEEEEEC-CCCCHHHHTTCTTCCEEECC
T ss_pred             CCCCEEEEcCCcccccccCCHHHHHHHhCCc-EEEECCCCChHHHHHHhhCCeEEEEeC-CCCCHHHHhhCCCCeEEEEe
Confidence            34577777766332     111223333332 33221 12233333 344677877754 58999999999999999975


Q ss_pred             -CccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCC--CCC---CCCCccCCCEEE
Q 027226           84 -GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--LGV---PTGETLLGKTVF  157 (226)
Q Consensus        84 -~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~--w~~---~~~~~l~gktvg  157 (226)
                       ++|+|+||+++++++||.|+|+||+   ++.+||||+++++|++.|++..+++.+++|.  |..   ..+.+++|||||
T Consensus       104 ~~~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvG  180 (365)
T 4hy3_A          104 ESNLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIG  180 (365)
T ss_dssp             SSSCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEE
T ss_pred             cccccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEE
Confidence             8999999999999999999999998   8999999999999999999999999999998  543   256899999999


Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      |||+|+||+++|+++++|||+|++|||+.+..      ....++++++++||+|++|     .+.++++.+.++
T Consensus       181 IIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~  254 (365)
T 4hy3_A          181 IVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFS  254 (365)
T ss_dssp             EECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHH
T ss_pred             EecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHh
Confidence            99999999999999999999999999986432      3457899999999999999     466777776654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=9.5e-36  Score=263.80  Aligned_cols=171  Identities=20%  Similarity=0.274  Sum_probs=150.9

Q ss_pred             CChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHH
Q 027226           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (226)
Q Consensus        47 ~~~~~~~~~adv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~  123 (226)
                      +++.+.++++|++++.   ...+++++++++|+||||++.++|+|+||++++.++||.|+|++|+   ++.+||||++++
T Consensus        81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~l  157 (393)
T 2nac_A           81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMM  157 (393)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHH
Confidence            3567889999998874   2368999999999999999999999999999999999999999998   899999999999


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------Cc-
Q 027226          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQ-  191 (226)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~-  191 (226)
                      +|++.|++..+++.++++.|..    ..+.+|+|+||||||+|+||+++|+++++|||+|++|+|+....       .. 
T Consensus       158 iL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~  237 (393)
T 2nac_A          158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTW  237 (393)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEE
T ss_pred             HHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCcee
Confidence            9999999999999999999963    23578999999999999999999999999999999999986442       12 


Q ss_pred             ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          192 VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      ..+++++++.||+|++|     .+.++++.+.++
T Consensus       238 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~  271 (393)
T 2nac_A          238 HATREDMYPVCDVVTLNCPLHPETEHMINDETLK  271 (393)
T ss_dssp             CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHT
T ss_pred             cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHh
Confidence            25799999999999999     456777666554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1e-35  Score=259.07  Aligned_cols=203  Identities=20%  Similarity=0.245  Sum_probs=162.7

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-C-CCCC-hhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCc
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V-PISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~a   85 (226)
                      |++++|+++.+..   ....+.+.+.+ ++.... . +.++ +.+.++++|++++. ..++++++++++|+||||++.++
T Consensus        21 m~~~~vl~~~~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~   96 (333)
T 3ba1_A           21 MEAIGVLMMCPMS---TYLEQELDKRF-KLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSV   96 (333)
T ss_dssp             -CCCEEEECSCCC---HHHHHHHHHHS-EEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSS
T ss_pred             CCCCEEEEeCCCC---HHHHHHHHhcC-CEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCc
Confidence            4446788876543   23334443333 332221 1 1122 44567899998874 45789999999999999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CCCCccCCCEEEEEcCC
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  162 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvgIvG~G  162 (226)
                      |+|++|+++++++||.|+|+||+   ++.+||||+++++|++.|++..+.+.++++.|..   ..+.+++|+||||||+|
T Consensus        97 G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G  173 (333)
T 3ba1_A           97 GLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLG  173 (333)
T ss_dssp             CCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCC
Confidence            99999999999999999999999   8999999999999999999999999999999963   24679999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCCC---cccChhhhcccCcEEEEe-----ccCCccccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASHS---QVSCQSSGWHCKQVISIF-----NEKGFSSGEYC  219 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~~---~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~  219 (226)
                      +||+++|+++++|||+|++|+|++....   ...+++++++++|+++++     .+..+++.+.+
T Consensus       174 ~iG~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l  238 (333)
T 3ba1_A          174 RIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVI  238 (333)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHH
Confidence            9999999999999999999999876531   245799999999999999     34566655444

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=4.2e-35  Score=256.41  Aligned_cols=205  Identities=16%  Similarity=0.274  Sum_probs=161.9

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhc-CCceEEEEc-CCCCCHHHHhcCCCceEEEecCcc
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVG   86 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG   86 (226)
                      +.+++|++.+..... .+  .+.++...++.... .+.+++.+.+ .++|+++++ ..+++++.++++|+||||++.++|
T Consensus        19 ~~kp~i~~l~~~~~~-~~--~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   95 (347)
T 1mx3_A           19 SHMPLVALLDGRDCT-VE--MPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSG   95 (347)
T ss_dssp             --CCEEEESSCSCCT-TT--HHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSC
T ss_pred             CCCCEEEEEcCCcch-hh--HHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEcccc
Confidence            445788888753221 11  23344333333322 2334555543 678877765 457899999999999999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---------CCCccCCCEEE
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVF  157 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~gktvg  157 (226)
                      +|+||++++.++||.|+|+||+   ++++||||+++++|++.|++..+.+.++++.|...         ...+++|+|||
T Consensus        96 ~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvG  172 (347)
T 1mx3_A           96 FDNIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLG  172 (347)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEE
T ss_pred             cCcccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEE
Confidence            9999999999999999999999   88999999999999999999999999999999542         12689999999


Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------Cc-ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQ-VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~-~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      |||+|+||+.+|++|++|||+|++|||+..+.      .. ..+++++++.||+|++|     .+.++++.+.++
T Consensus       173 IIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  247 (347)
T 1mx3_A          173 IIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVK  247 (347)
T ss_dssp             EECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHT
T ss_pred             EEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHh
Confidence            99999999999999999999999999986543      11 24799999999999999     456677666554

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.2e-34  Score=252.22  Aligned_cols=201  Identities=19%  Similarity=0.278  Sum_probs=162.3

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCC------CCChhhhcCCceEEEEc-CCCCCHHHHhcC-CCceEEEe
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP------ISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQ   82 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~adv~i~~-~~~~~~~~l~~~-~~Lk~I~~   82 (226)
                      .+|+|++..+..   ..+.+.+.+.. +.++..++      .+++.+.++++|+++++ ..++++++++++ |+||||++
T Consensus         7 ~~~~il~~~~~~---~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~   82 (330)
T 2gcg_A            7 RLMKVFVTRRIP---AEGRVALARAA-DCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIST   82 (330)
T ss_dssp             CCEEEEESSCCC---HHHHHHHHHCT-TEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEE
T ss_pred             CCCEEEEECCCC---HHHHHHHHhcC-CceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEE
Confidence            457888876442   23344443332 34443322      24566778899998874 457899999998 99999999


Q ss_pred             cCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCEEE
Q 027226           83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVF  157 (226)
Q Consensus        83 ~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvg  157 (226)
                      .++|+|++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+.+.++++.|..     ..+.++.|+|||
T Consensus        83 ~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           83 MSVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             CCcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999   8999999999999999999999999999999964     135799999999


Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-----ccCCcccccc
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEY  218 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~  218 (226)
                      |||+|.||+.+|+++++|||+|++|+|+....       ....+++++++.+|+++++     .+..+++.+.
T Consensus       160 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~  232 (330)
T 2gcg_A          160 IIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDF  232 (330)
T ss_dssp             EECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHH
T ss_pred             EECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHH
Confidence            99999999999999999999999999876421       2234789999999999999     2345565443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=4.1e-35  Score=256.85  Aligned_cols=204  Identities=15%  Similarity=0.253  Sum_probs=161.3

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcC-----CceEEEEc-------CCCCCHHHHhcCC-Cc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIA-----NYHLCVVK-------TMRLDSNCISRAN-QM   77 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~adv~i~~-------~~~~~~~~l~~~~-~L   77 (226)
                      +++|+++.+.........+.+.+.+ ++.+.. .+.+++.+.++     ++|+++..       ..++++++++++| +|
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L   81 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQKF-EVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL   81 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHHS-EEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred             CcEEEEECCccccChHHHHHHHhcc-eEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence            4689998762221122233333322 333221 23455666665     88988762       3478999999998 69


Q ss_pred             eEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCC---CCC------CCC
Q 027226           78 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---LGV------PTG  148 (226)
Q Consensus        78 k~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~---w~~------~~~  148 (226)
                      |||++.++|+|++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.+++|.   |..      ..+
T Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           82 KVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             eEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence            9999999999999999999999999999999   8899999999999999999999999999999   931      246


Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC-------Ccc-cChhhhcccCcEEEEe-----ccCCcc
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH-------SQV-SCQSSGWHCKQVISIF-----NEKGFS  214 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~-------~~~-~~l~ell~~sD~v~l~-----~~~d~i  214 (226)
                      .+++|+||||||+|+||+.+|++++ +|||+|++|||+....       ... .+++++++.+|++++|     .+..++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li  238 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI  238 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh
Confidence            7999999999999999999999999 9999999999986532       122 3789999999999999     245666


Q ss_pred             ccccc
Q 027226          215 SGEYC  219 (226)
Q Consensus       215 ~~~~~  219 (226)
                      +.+.+
T Consensus       239 ~~~~l  243 (348)
T 2w2k_A          239 DEAFF  243 (348)
T ss_dssp             CHHHH
T ss_pred             hHHHH
Confidence            65443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2e-35  Score=260.05  Aligned_cols=172  Identities=23%  Similarity=0.325  Sum_probs=150.4

Q ss_pred             CCChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEecCccCCccchhHHHhC--CcEEEecCCCCCCCchhHHHHH
Q 027226           46 ISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC--GIKVARIPGDVTGNAASCAELT  120 (226)
Q Consensus        46 ~~~~~~~~~~adv~i~~~---~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~--gi~v~n~~~~~~~~~~~vAE~~  120 (226)
                      .+++.+.++++|++++..   ..+++++++++|+||||++.++|+|++|++++.++  ||.|+|+||+   ++.+||||+
T Consensus        51 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~  127 (364)
T 2j6i_A           51 NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHV  127 (364)
T ss_dssp             TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHH
T ss_pred             HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHH
Confidence            356778889999988742   24789999999999999999999999999999998  9999999999   899999999


Q ss_pred             HHHHHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCCC------
Q 027226          121 IYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH------  189 (226)
Q Consensus       121 l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~------  189 (226)
                      ++++|++.|++..+++.++++.|..    ..+.+++|+||||||+|+||+++|++|++|||+ |++|||++...      
T Consensus       128 ~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~  207 (364)
T 2j6i_A          128 VMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV  207 (364)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT
T ss_pred             HHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc
Confidence            9999999999999999999999963    246799999999999999999999999999997 99999876432      


Q ss_pred             -Cc-ccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          190 -SQ-VSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       190 -~~-~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                       .. ..+++++++.+|+|++|     .+..+++.+.++
T Consensus       208 g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~  245 (364)
T 2j6i_A          208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLS  245 (364)
T ss_dssp             TEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             CcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHh
Confidence             11 24799999999999999     445677766554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.1e-35  Score=252.32  Aligned_cols=190  Identities=17%  Similarity=0.222  Sum_probs=155.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (226)
                      |+|++..+..   ....+.+.+ . +.++.       .+.++++|+++++  ..+.+.++++|+||||++.++|+|++|.
T Consensus         1 m~il~~~~~~---~~~~~~l~~-~-~~~v~-------~~~~~~~d~~i~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~   66 (303)
T 1qp8_A            1 MELYVNFELP---PEAEEELRK-Y-FKIVR-------GGDLGNVEAALVS--RITAEELAKMPRLKFIQVVTAGLDHLPW   66 (303)
T ss_dssp             CEEECCSCCC---HHHHHHHHT-T-CEEEC-------SSCCTTBCCCCBS--CCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEccCCC---HHHHHHHHh-c-CCccc-------hhhhCCCEEEEEC--CCCHHHHhhCCCCcEEEECCcCcccccH
Confidence            4788866542   223333333 2 33332       2457889998876  3567999999999999999999999999


Q ss_pred             hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-CCCccCCCEEEEEcCChHHHHHHHH
Q 027226           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKR  171 (226)
Q Consensus        93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~l~gktvgIvG~G~IG~~vA~~  171 (226)
                      ++ .++||.|+|++|+   ++.+||||+++++|++.|++..+++.++++.|... ...++.|+||||||+|+||+.+|++
T Consensus        67 ~~-~~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~  142 (303)
T 1qp8_A           67 ES-IPPHVTVAGNAGS---NADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKI  142 (303)
T ss_dssp             TT-SCTTSCEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHH
T ss_pred             HH-HhcCCEEEECCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHH
Confidence            87 4799999999998   88999999999999999999999999999999754 4458999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCCCC--CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          172 LRPFGVKIIATKRSWASH--SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       172 l~afG~~V~~~~r~~~~~--~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                      +++|||+|++|+|++...  ....+++++++.||++++|     .+..+++.+.++
T Consensus       143 l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~  198 (303)
T 1qp8_A          143 LAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLA  198 (303)
T ss_dssp             HHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             HHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHh
Confidence            999999999999987521  2356899999999999999     456677655554

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.3e-35  Score=256.05  Aligned_cols=198  Identities=25%  Similarity=0.362  Sum_probs=161.7

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCcc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~i   90 (226)
                      ++|+++.+..   ....+.+ +...++++.. .+.+++.+.++++|++++. ..++++++++++|+||||++.++|+|++
T Consensus         3 ~~il~~~~~~---~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKMK---REALEEL-KKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCCC---HHHHHHH-HTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCCC---HHHHHHH-HhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            5788876542   2233333 3333444432 2334566778999998864 4578999999999999999999999999


Q ss_pred             chhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----CCC----CccCCCEEEEEcCC
Q 027226           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTG----ETLLGKTVFILGFG  162 (226)
Q Consensus        91 d~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~----~~l~gktvgIvG~G  162 (226)
                      |++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|..    ..+    .++.|+||||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999998   8999999999999999999999999999999964    134    79999999999999


Q ss_pred             hHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccc
Q 027226          163 NIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGE  217 (226)
Q Consensus       163 ~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~  217 (226)
                      .||+.+|+++++|||+|++|||++...      ....+++++++.+|++++|     .+..+++.+
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~  221 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE  221 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHH
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHH
Confidence            999999999999999999999987642      2234788999999999999     334455543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.1e-34  Score=252.96  Aligned_cols=199  Identities=20%  Similarity=0.258  Sum_probs=161.3

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecC----CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCcc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG   86 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG   86 (226)
                      |++|++..+..   ....+.+ +...++.+...    +.+++.+.++++|+++++. .++++++++++|+||||++.++|
T Consensus         2 ~~~il~~~~~~---~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G   77 (334)
T 2dbq_A            2 KPKVFITREIP---EVGIKML-EDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVG   77 (334)
T ss_dssp             CCEEEESSCCC---HHHHHHH-HTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CcEEEEecCCC---HHHHHHH-HhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCcc
Confidence            35788875542   2333433 33234443222    2345667789999998863 47899999999999999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCC----C-----CCCCccCCCEEE
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----V-----PTGETLLGKTVF  157 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~----~-----~~~~~l~gktvg  157 (226)
                      +|++|++++.++||.|+|+||+   ++.+||||+++++|++.|++..+++.++++.|.    .     ..+.++.|+|||
T Consensus        78 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vg  154 (334)
T 2dbq_A           78 YDNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIG  154 (334)
T ss_dssp             CTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEE
T ss_pred             cccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEE
Confidence            9999999999999999999999   899999999999999999999999999999995    1     135789999999


Q ss_pred             EEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccc
Q 027226          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGE  217 (226)
Q Consensus       158 IvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~  217 (226)
                      |||+|.||+.+|+++++|||+|++|+|+....      ....+++++++.+|+++++     .+..+++.+
T Consensus       155 IIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~  225 (334)
T 2dbq_A          155 IIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEE  225 (334)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             EEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHH
Confidence            99999999999999999999999999987542      2345789999999999999     234555543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.4e-34  Score=265.94  Aligned_cols=202  Identities=22%  Similarity=0.335  Sum_probs=165.4

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCC
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      ++|+|+++.+..+..   .+ .++...++.+.. .+.+++.+.++++|+++++ ..++++++++++|+||||+..++|+|
T Consensus         3 ~~~~vl~~~~~~~~~---~~-~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d   78 (529)
T 1ygy_A            3 SLPVVLIADKLAPST---VA-ALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   78 (529)
T ss_dssp             CCCEEEECSSCCGGG---GT-TSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCcEEEEeCCCCHHH---HH-HHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcC
Confidence            347899987654321   22 223223333322 2335667788999999885 45789999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCChHHH
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  166 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~IG~  166 (226)
                      ++|++++.++||.|+|+||+   |+.+||||+++++|++.|+++.+++.+++|.|.+  ..+.+++|+||||||+|.||+
T Consensus        79 ~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~  155 (529)
T 1ygy_A           79 NVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQ  155 (529)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHH
T ss_pred             ccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHH
Confidence            99999999999999999998   8999999999999999999999999999999975  346899999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe-----ccCCccccccc
Q 027226          167 ELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYC  219 (226)
Q Consensus       167 ~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~  219 (226)
                      .+|++|++|||+|++|||+....      ....+++++++.||++++|     .+.++++.+.+
T Consensus       156 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~  219 (529)
T 1ygy_A          156 LVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL  219 (529)
T ss_dssp             HHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHH
Confidence            99999999999999999986432      2234789999999999999     45566665343

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=4.7e-34  Score=243.98  Aligned_cols=160  Identities=20%  Similarity=0.294  Sum_probs=137.8

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhc
Q 027226           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (226)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~  130 (226)
                      +.++++|+++++...     + ++|+||||++.++|+|++|.+++.++++.++| +|.   ++.+||||+++++|++.|+
T Consensus        30 ~~~~~ad~li~~~~~-----~-~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~---~~~~vAE~~~~~~L~~~R~   99 (290)
T 3gvx_A           30 PDYYDAEAQVIKDRY-----V-LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGA---YSISVAEHAFALLLAHAKN   99 (290)
T ss_dssp             TSCCCCSEEEESSCC-----C-CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHH---HHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhh-----h-hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCc---ceeeHHHHHHHHHHHHHHh
Confidence            567899999884332     2 68999999999999999999988887665555 465   8899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--C-cccChhhhcccCcEEEE
Q 027226          131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--S-QVSCQSSGWHCKQVISI  207 (226)
Q Consensus       131 ~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--~-~~~~l~ell~~sD~v~l  207 (226)
                      +..+++.++++.|......+++|+||||||+|+||+.+|++|++|||+|++|||+++..  . ...+++++++.||++++
T Consensus       100 ~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l  179 (290)
T 3gvx_A          100 ILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLI  179 (290)
T ss_dssp             HHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEE
T ss_pred             hhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEE
Confidence            99999999999998766688999999999999999999999999999999999987654  2 23489999999999999


Q ss_pred             e-----ccCCcccccccc
Q 027226          208 F-----NEKGFSSGEYCS  220 (226)
Q Consensus       208 ~-----~~~d~i~~~~~~  220 (226)
                      |     .+..+++.++++
T Consensus       180 ~~P~t~~t~~li~~~~l~  197 (290)
T 3gvx_A          180 AIPLTDKTRGMVNSRLLA  197 (290)
T ss_dssp             CCCCCTTTTTCBSHHHHT
T ss_pred             EeeccccchhhhhHHHHh
Confidence            9     456677666654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=9.9e-34  Score=249.33  Aligned_cols=184  Identities=18%  Similarity=0.292  Sum_probs=151.2

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEecCccCCc
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEG   89 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~~~Lk~I~~~~aG~d~   89 (226)
                      +||||++.... +    +..++++.+.++.+.. ..+...+.++++|+++++. .++++++++ .++||||++.++|+||
T Consensus         2 ~mmkIl~~~~~-p----~~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~   74 (381)
T 3oet_A            2 NAMKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDH   74 (381)
T ss_dssp             CCCEEEEETTS-T----THHHHHTTSSEEEEEC-C---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTT
T ss_pred             CceEEEECCCC-c----HHHHHHhhCCcEEEeC-CCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccc
Confidence            46899998655 2    2356666665554432 1222346689999999864 568999999 6789999999999999


Q ss_pred             cchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHH
Q 027226           90 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELA  169 (226)
Q Consensus        90 id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA  169 (226)
                      ||.+++.++||.|+|+||+   |+.+||||+++++|++.|+.                +.+++||||||||+|+||+++|
T Consensus        75 iD~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~~----------------g~~l~gktvGIIGlG~IG~~vA  135 (381)
T 3oet_A           75 VDEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAERD----------------GFSLRDRTIGIVGVGNVGSRLQ  135 (381)
T ss_dssp             BCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHHT----------------TCCGGGCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHhc----------------CCccCCCEEEEEeECHHHHHHH
Confidence            9999999999999999999   89999999999999999862                4689999999999999999999


Q ss_pred             HHHccCCCEEEEEcCCCCC---CCcccChhhhcccCcEEEEe-----c----cCCcccccccc
Q 027226          170 KRLRPFGVKIIATKRSWAS---HSQVSCQSSGWHCKQVISIF-----N----EKGFSSGEYCS  220 (226)
Q Consensus       170 ~~l~afG~~V~~~~r~~~~---~~~~~~l~ell~~sD~v~l~-----~----~~d~i~~~~~~  220 (226)
                      ++|++|||+|++|||+...   .....++++++++||+|++|     .    +..+++.+.++
T Consensus       136 ~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~  198 (381)
T 3oet_A          136 TRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIR  198 (381)
T ss_dssp             HHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHH
T ss_pred             HHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHh
Confidence            9999999999999985422   23567899999999999999     2    67788776654

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.97  E-value=8.8e-32  Score=237.32  Aligned_cols=182  Identities=16%  Similarity=0.258  Sum_probs=146.5

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCCccc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d~id   91 (226)
                      |||++.... +.    ..++++.+.++.+... .+...+.++++|+++++ ..++++++++ +|+||||++.++|+||+|
T Consensus         1 mkil~~~~~-~~----~~~~~~~~~~v~~~~~-~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD   73 (380)
T 2o4c_A            1 MRILADENI-PV----VDAFFADQGSIRRLPG-RAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLD   73 (380)
T ss_dssp             CEEEEETTC-TT----HHHHHGGGSEEEEECG-GGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBC
T ss_pred             CEEEEecCc-hH----HHHHHHhCCcEEEecC-CcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhh
Confidence            588887654 22    2444555444443221 11223457899999886 3578999999 999999999999999999


Q ss_pred             hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHH
Q 027226           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (226)
Q Consensus        92 ~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~  171 (226)
                      .+++.++||.|+|+||+   ++.+||||+++++|++.|++                +.+++|+||||||+|+||+.+|++
T Consensus        74 ~~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----------------~~~l~g~tvGIIGlG~IG~~vA~~  134 (380)
T 2o4c_A           74 LDYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----------------GADLAERTYGVVGAGQVGGRLVEV  134 (380)
T ss_dssp             HHHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----------------hcccCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999998   89999999999999999873                368999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCCC---CCcccChhhhcccCcEEEEe-----c----cCCcccccccc
Q 027226          172 LRPFGVKIIATKRSWAS---HSQVSCQSSGWHCKQVISIF-----N----EKGFSSGEYCS  220 (226)
Q Consensus       172 l~afG~~V~~~~r~~~~---~~~~~~l~ell~~sD~v~l~-----~----~~d~i~~~~~~  220 (226)
                      |++|||+|++|||+...   .....++++++++||++++|     .    +..+++.+.++
T Consensus       135 l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~  195 (380)
T 2o4c_A          135 LRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLA  195 (380)
T ss_dssp             HHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHH
T ss_pred             HHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHh
Confidence            99999999999986432   12457899999999999999     2    66777766554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.93  E-value=7.5e-26  Score=193.61  Aligned_cols=183  Identities=14%  Similarity=0.123  Sum_probs=142.3

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCC-----------CChhhhcCCceEEEEc-----------------
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPI-----------SDVPDVIANYHLCVVK-----------------   62 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~adv~i~~-----------------   62 (226)
                      +.|+|++..... ....+.+.+.+...++.+...+.           +++.+.++++|+++++                 
T Consensus         4 ~~m~i~v~~~~~-~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDA-RQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCH-HHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCH-HHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence            347899987553 23444555555444555443322           3456678899999874                 


Q ss_pred             CCCCCHHHHhcCCCceEEEecCccCCccch-hHHHhCCcEEEecC------CCCCCCchhHHHHHHHHHHHHhhcHHHHH
Q 027226           63 TMRLDSNCISRANQMKLIMQFGVGLEGVDI-NAATRCGIKVARIP------GDVTGNAASCAELTIYLMLGLLRKQNEMR  135 (226)
Q Consensus        63 ~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~-~~~~~~gi~v~n~~------~~~~~~~~~vAE~~l~~~L~~~R~~~~~~  135 (226)
                      ..+++++.++.+|+||+|+   +|+|++|+ +++.++||+|+|++      ++   ++.+|||++++++|..        
T Consensus        83 ~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~--------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH--------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH--------
T ss_pred             CccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh--------
Confidence            1247899999999999997   89999997 88999999999998      66   7899999999998864        


Q ss_pred             HHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------Cc---ccChhhhcccCcEE
Q 027226          136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQ---VSCQSSGWHCKQVI  205 (226)
Q Consensus       136 ~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~---~~~l~ell~~sD~v  205 (226)
                                 .+.++.|+||||+|+|+||+.+|+++++|||+|++++|++...       ..   ..+++++++.+|++
T Consensus       149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV  217 (293)
T 3d4o_A          149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC  217 (293)
T ss_dssp             -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred             -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence                       1468999999999999999999999999999999999986431       11   24688899999999


Q ss_pred             EEeccCCccccccc
Q 027226          206 SIFNEKGFSSGEYC  219 (226)
Q Consensus       206 ~l~~~~d~i~~~~~  219 (226)
                      ++|-...+++.+.+
T Consensus       218 i~~~p~~~i~~~~l  231 (293)
T 3d4o_A          218 INTIPALVVTANVL  231 (293)
T ss_dssp             EECCSSCCBCHHHH
T ss_pred             EECCChHHhCHHHH
Confidence            99976666665543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.88  E-value=9.2e-23  Score=174.92  Aligned_cols=187  Identities=12%  Similarity=0.086  Sum_probs=136.9

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCC-----------ChhhhcCCceEEEEc---------------C
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS-----------DVPDVIANYHLCVVK---------------T   63 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~adv~i~~---------------~   63 (226)
                      ++.|+|++..... ....+.+.+.+...++.+..++.+           ++.+.++++|+++.+               .
T Consensus         5 ~~~mki~v~~~~~-~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~   83 (300)
T 2rir_A            5 LTGLKIAVIGGDA-RQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN   83 (300)
T ss_dssp             CCSCEEEEESBCH-HHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred             ccCCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence            4457899997653 234445555554445554443332           245667899998872               2


Q ss_pred             CC--CCHHHHhcCCCceEEEecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHh
Q 027226           64 MR--LDSNCISRANQMKLIMQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ  140 (226)
Q Consensus        64 ~~--~~~~~l~~~~~Lk~I~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~  140 (226)
                      .+  ++++.++.+|++|+|+   +|+|++| .+++.++||.|+|+++.     .++         ++.|+++..     +
T Consensus        84 ~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~-----~~v---------~~~r~~~~~-----~  141 (300)
T 2rir_A           84 EEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER-----DDI---------AIYNSIPTV-----E  141 (300)
T ss_dssp             SCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS-----HHH---------HHHHHHHHH-----H
T ss_pred             CCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC-----Cce---------EEEcCccHH-----H
Confidence            34  6899999999999998   8999999 99999999999999987     233         234555433     2


Q ss_pred             CCCC---CCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C---cccChhhhcccCcEEEE
Q 027226          141 KKLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S---QVSCQSSGWHCKQVISI  207 (226)
Q Consensus       141 ~~w~---~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l  207 (226)
                      +.|.   ...+.++.|+||||+|+|.||+++|++|++|||+|++|+|++...       .   ...+++++++.+|++++
T Consensus       142 g~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          142 GTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICIN  221 (300)
T ss_dssp             HHHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEE
T ss_pred             HHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEE
Confidence            3342   123578999999999999999999999999999999999986431       1   13578899999999999


Q ss_pred             eccCCccccccc
Q 027226          208 FNEKGFSSGEYC  219 (226)
Q Consensus       208 ~~~~d~i~~~~~  219 (226)
                      |-...+++.+.+
T Consensus       222 ~~p~~~i~~~~~  233 (300)
T 2rir_A          222 TIPSMILNQTVL  233 (300)
T ss_dssp             CCSSCCBCHHHH
T ss_pred             CCChhhhCHHHH
Confidence            977677765544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.78  E-value=1.7e-20  Score=169.31  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=114.3

Q ss_pred             CCCceEEE-ecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccC
Q 027226           74 ANQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (226)
Q Consensus        74 ~~~Lk~I~-~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~  152 (226)
                      +|+++.|. .+++|+|++  +++.++||.++|++++   ++ ++||       ++.|++....+.++++ |.+..+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccC
Confidence            37999999 889999998  5889999999999998   77 9999       4568888888888888 8655567899


Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      ||||||+|+|.||+.+|++|++|||+|++|+|++...       ....+++++++.+|++++| .+.++|+.+.++
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~  332 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLL  332 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHHT
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCHHHHh
Confidence            9999999999999999999999999999999986431       3456899999999999999 666777766654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.78  E-value=2.7e-20  Score=168.68  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=110.4

Q ss_pred             CCceEEE-ecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCC
Q 027226           75 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (226)
Q Consensus        75 ~~Lk~I~-~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (226)
                      |+++.|. ..++|+|++  +++.++||.++|++++   ++ +|||+       +.|++....+.+.++ |.+..+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~-------l~r~~~~~~~~l~~g-w~~~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKS-------KFDNLYGCRESLVDG-IKRATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------HHHHHHHHHTTHHHH-HHHHHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHH-------HHhhhHhhhhhhhhh-hhhccccccCC
Confidence            8999998 889999998  5789999999999998   77 99994       346666665556666 75555678999


Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      |||||+|+|.||+.+|++|++|||+|++|+|++...       ....+++++++.+|+++++ .+.++|+.+.++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~  352 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMK  352 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCHHHHh
Confidence            999999999999999999999999999999986431       3456899999999999999 667777766654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.51  E-value=2e-14  Score=126.81  Aligned_cols=149  Identities=11%  Similarity=0.003  Sum_probs=110.5

Q ss_pred             hhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEE----------ecCCCCCCCchhHHHHH
Q 027226           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA----------RIPGDVTGNAASCAELT  120 (226)
Q Consensus        51 ~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~----------n~~~~~~~~~~~vAE~~  120 (226)
                      +.++++|+++....+++.+.....++..++.....++|.-.++.+.++||++.          |.|.+     .++||++
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~a  137 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVA  137 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHH
Confidence            44567898876555566666666788878887788889888888999999997          55555     6788999


Q ss_pred             HHHHHHHh-hcHHHHHHHHHhCCCCC-CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C--
Q 027226          121 IYLMLGLL-RKQNEMRMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S--  190 (226)
Q Consensus       121 l~~~L~~~-R~~~~~~~~~~~~~w~~-~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~--  190 (226)
                      .++.+.+. |++.+    ...++|.. ....++.|+||+|+|+|.||+.+|+++++||++|+++|+++...      .  
T Consensus       138 g~~a~~~a~r~l~~----~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~  213 (377)
T 2vhw_A          138 GRLAAQVGAYHLMR----TQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG  213 (377)
T ss_dssp             HHHHHHHHHHHTSG----GGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHH----hcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            96665555 65532    23344321 12357999999999999999999999999999999999975431      1  


Q ss_pred             -------cccChhhhcccCcEEEEe
Q 027226          191 -------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       191 -------~~~~l~ell~~sD~v~l~  208 (226)
                             ...+++++++.+|+++..
T Consensus       214 ~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          214 RIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             SSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             eeEeccCCHHHHHHHHcCCCEEEEC
Confidence                   133577888899999884

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.42  E-value=2.5e-14  Score=129.84  Aligned_cols=127  Identities=15%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             CCceEE-EecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCC
Q 027226           75 NQMKLI-MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (226)
Q Consensus        75 ~~Lk~I-~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (226)
                      ++++-+ -..++|||++  .++.++|+.++|+++.   ++ ++||+.       .|++....+....+ |.+..+..+.|
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~~-------~r~l~~~~~s~~~g-~~r~~~~~l~G  274 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKSK-------FDNKYGTRHSLIDG-INRGTDALIGG  274 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHHT-------THHHHHHHHHHHHH-HHHHHCCCCTT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHHH-------HhhhhhhhhhhhHH-HHhccCCCCCc
Confidence            344444 4789999998  5788999999999998   76 999953       34444333333333 43223457899


Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEec-cCCccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIFN-EKGFSS  215 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~~-~~d~i~  215 (226)
                      ++|+|+|+|.||+.+|+++++||++|+++++++...       .+..+++++++.+|+++.+. +.++++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~  344 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIM  344 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBC
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHH
Confidence            999999999999999999999999999999976431       23456888999999999994 444454

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.36  E-value=4e-13  Score=119.62  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             CceEE-EecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCC
Q 027226           76 QMKLI-MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (226)
Q Consensus        76 ~Lk~I-~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (226)
                      +++-+ =-+++|+..+. +....+.+|+|.|+++.   ......+...+..-.+...+.+      .      .+..+.|
T Consensus       147 ~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvnds---vtk~~~Dn~~Gt~~slldgi~r------a------tg~~L~G  211 (436)
T 3h9u_A          147 KIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDS---VTKSKFDNLYGCRESLVDGIKR------A------TDVMIAG  211 (436)
T ss_dssp             TCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTS---HHHHTTHHHHHHHHHHHHHHHH------H------HCCCCTT
T ss_pred             hccceeeccCcChHHHHHHHHcCCCCCceEeechh---hhhhhhhccccchHHHHHHHHH------h------cCCcccC
Confidence            33333 34566766642 23345689999999876   2333233222222222222211      0      2568999


Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEec-cCCcccccccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIFN-EKGFSSGEYCS  220 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~~-~~d~i~~~~~~  220 (226)
                      +||||+|+|+||+.+|++|++|||+|+++++++...       ....+++++++.+|++++.. +.++|+.+.++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l~  286 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFP  286 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHHh
Confidence            999999999999999999999999999999976321       34568999999999999874 45777767664

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.30  E-value=3.6e-12  Score=113.19  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             ceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHH---HHHhhcH
Q 027226           56 YHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM---LGLLRKQ  131 (226)
Q Consensus        56 adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~---L~~~R~~  131 (226)
                      +|+++... .++.+.++.+ |++++|...+.|+|+.+++.+.++||++.+..        .|+|++.++.   +.....+
T Consensus        73 adiil~vk-~p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~e--------~v~~~~~a~~l~~l~~~a~~  143 (401)
T 1x13_A           73 SEIILKVN-APLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMD--------SVPRISRAQSLDALSSMANI  143 (401)
T ss_dssp             SSEEECSS-CCCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEGG--------GCCCSGGGGGGCHHHHHHHH
T ss_pred             CCeEEEeC-CCCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEee--------hhhhhhhhcccchHHHHHHH
Confidence            89887543 3467778887 79999999999999999999999999997543        3344333332   2222222


Q ss_pred             HHHHHHHHh-----CCCCCCC---CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          132 NEMRMAIEQ-----KKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       132 ~~~~~~~~~-----~~w~~~~---~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .. ...+..     +.|....   ...+.|++|+|+|+|.||+.+++.+++||++|+++|+++.
T Consensus       144 ag-~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          144 AG-YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             HH-HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             HH-HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            21 111111     1221110   1158899999999999999999999999999999999864

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.28  E-value=2.6e-12  Score=114.42  Aligned_cols=130  Identities=12%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             CceEE-EecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCC
Q 027226           76 QMKLI-MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (226)
Q Consensus        76 ~Lk~I-~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (226)
                      +++-+ =-+++|+-.+- +...-...+|+.|+.+.       +..+-+-........+......        ..+..+.|
T Consensus       183 ~i~G~~EeTtTGv~rL~~m~~~g~L~~PvinVnds-------~tK~~fDn~yG~~eslvdgI~R--------atg~~L~G  247 (464)
T 3n58_A          183 AIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDS-------VTKSKFDNKYGCKESLVDGIRR--------GTDVMMAG  247 (464)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHHTCCCSCEEECTTS-------HHHHTTHHHHHHHHHHHHHHHH--------HHCCCCTT
T ss_pred             hccceeeccccchHHHHHHHHcCCCCCCEEeeccH-------hhhhhhhhhhcchHHHHHHHHH--------hcCCcccC
Confidence            44444 34577776652 22233467999998776       3333332222222222111110        02578999


Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC-------CCcccChhhhcccCcEEEEec-cCCcccccccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-------HSQVSCQSSGWHCKQVISIFN-EKGFSSGEYCS  220 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~l~ell~~sD~v~l~~-~~d~i~~~~~~  220 (226)
                      |||||+|+|.||+.+|++|++|||+|+++++.+..       .+...+++++++.+|+++++. +.++|+.+.++
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l~  322 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMR  322 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECCSSSSSBCHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECCCCccccCHHHHh
Confidence            99999999999999999999999999999886532       134568999999999999884 55677766654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.27  E-value=8.4e-12  Score=110.21  Aligned_cols=132  Identities=12%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             hhcCCceEEEEcCCCC----CHHHHhcCC-CceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHH
Q 027226           51 DVIANYHLCVVKTMRL----DSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (226)
Q Consensus        51 ~~~~~adv~i~~~~~~----~~~~l~~~~-~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L  125 (226)
                      +.++++|+++....++    +++.++.++ +++++.....+.|+.+++.+.++||.+++..-. .   ...++..+. +|
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~---~~~~~~~l~-~l  137 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-P---RISRAQSMD-IL  137 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-C---CSGGGGGGC-HH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-c---ccccccccc-hh
Confidence            4567899988754444    678888885 699999999999999999999999999975222 1   111111111 12


Q ss_pred             HHhhcHHHHHHHHHh-----CCCCCC---CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          126 GLLRKQNEMRMAIEQ-----KKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       126 ~~~R~~~~~~~~~~~-----~~w~~~---~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +..+.+. .......     ++|...   ....+.|++|+|+|+|.||+.+++.+++||++|+++|+++..
T Consensus       138 ~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~  207 (384)
T 1l7d_A          138 SSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT  207 (384)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             hHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            2222211 1111111     222211   114789999999999999999999999999999999998653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.14  E-value=6.3e-11  Score=105.30  Aligned_cols=73  Identities=15%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC-------CCcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-------HSQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      +..+.||||+|+|+|.||+.+|++|++|||+|+++++++..       .....+++++++.+|++++. .+.++|+.+.+
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l  294 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHL  294 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHH
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHH
Confidence            56899999999999999999999999999999999987521       13456899999999999997 34567765555


Q ss_pred             c
Q 027226          220 S  220 (226)
Q Consensus       220 ~  220 (226)
                      .
T Consensus       295 ~  295 (435)
T 3gvp_A          295 D  295 (435)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.09  E-value=1.7e-10  Score=101.27  Aligned_cols=151  Identities=12%  Similarity=0.006  Sum_probs=102.8

Q ss_pred             hcCCceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEE---ecCCCCCCC--chhHHHHHH--HH
Q 027226           52 VIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGN--AASCAELTI--YL  123 (226)
Q Consensus        52 ~~~~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~---n~~~~~~~~--~~~vAE~~l--~~  123 (226)
                      .+ ++|+++....++ .+.++.+ ++++++.....+.|..+++.+.++||++.   +++......  -.+++|.+-  +.
T Consensus        63 ~~-~ad~il~vk~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av  140 (369)
T 2eez_A           63 AW-GAEMVVKVKEPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAP  140 (369)
T ss_dssp             HT-TSSEEECSSCCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHH
T ss_pred             ee-cCCEEEEECCCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHH
Confidence            45 799988654444 4457775 78999999999999999999999999997   555431100  155666554  22


Q ss_pred             HHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C-------
Q 027226          124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S-------  190 (226)
Q Consensus       124 ~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~-------  190 (226)
                      ++++ +.+.....  .++.|... ...+.+++|+|+|.|.||+.+|+.++++|++|+++++++...      .       
T Consensus       141 ~~a~-~~l~~~~~--g~~~~~~~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~  216 (369)
T 2eez_A          141 QVGA-QFLEKPKG--GRGVLLGG-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITL  216 (369)
T ss_dssp             HHHH-HHTSGGGT--SCCCCTTC-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred             HHHH-HHHHHhcC--CCceecCC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEe
Confidence            2222 22222110  11123222 357999999999999999999999999999999999975321      0       


Q ss_pred             --cccChhhhcccCcEEEEe
Q 027226          191 --QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       191 --~~~~l~ell~~sD~v~l~  208 (226)
                        ...++++++..+|+++.+
T Consensus       217 ~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          217 TATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             ECCHHHHHHHHHHCSEEEEC
T ss_pred             cCCHHHHHHHHhCCCEEEEC
Confidence              134566788889999776

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.97  E-value=1.1e-11  Score=110.20  Aligned_cols=129  Identities=16%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             CCceEEEecCccCCccchhHHH-----hCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC---
Q 027226           75 NQMKLIMQFGVGLEGVDINAAT-----RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---  146 (226)
Q Consensus        75 ~~Lk~I~~~~aG~d~id~~~~~-----~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---  146 (226)
                      +.+++|...++|+|++++.+..     +.++.+++.+|.   . .+++++.+..++.+.|++...... ..+.|...   
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~---~-~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~a  154 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT---L-DEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAA  154 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC---C-CHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC---c-hHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHH
Confidence            4688899999999999887765     778889998886   3 678999999999999988655322 23344310   


Q ss_pred             --C----CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          147 --T----GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 --~----~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                        .    ..++.|++|+|+|+|.||+.+++.|+++|+ +|++++|+....           ....++++++..+|+++.+
T Consensus       155 v~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~a  234 (404)
T 1gpj_A          155 VELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSA  234 (404)
T ss_dssp             HHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEEC
T ss_pred             HHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEc
Confidence              0    124789999999999999999999999999 999999986431           1234677888899999998

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.69  E-value=7.5e-08  Score=83.91  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=57.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC-------CCcccChhhhcc-cCcEEEEeccCCcccccc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-------HSQVSCQSSGWH-CKQVISIFNEKGFSSGEY  218 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~l~ell~-~sD~v~l~~~~d~i~~~~  218 (226)
                      ++.||||+|+|+|+||+.+|++|++|||+|+++|+++..       .....++++++. .+|+++-.++.+.|+.+-
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A~~~~I~~~~  248 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEV  248 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECSCSCCBCHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhHHHhhcCHHH
Confidence            799999999999999999999999999999999986431       123446788888 899999888777777643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.66  E-value=2.1e-08  Score=90.50  Aligned_cols=127  Identities=15%  Similarity=0.113  Sum_probs=80.3

Q ss_pred             CceEE-EecCccCCccc-hhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCC
Q 027226           76 QMKLI-MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (226)
Q Consensus        76 ~Lk~I-~~~~aG~d~id-~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~g  153 (226)
                      +++-+ =-+++|+..+- +.......||+.|+.+..   ....-+-..+.--.+...+.      +      ..+..+.|
T Consensus       201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~---tK~~fDn~yGt~~sl~dgi~------r------~tg~~L~G  265 (488)
T 3ond_A          201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSV---TKSKFDNLYGCRHSLPDGLM------R------ATDVMIAG  265 (488)
T ss_dssp             HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSH---HHHTTHHHHHHHHHHHHHHH------H------HHCCCCTT
T ss_pred             hcceeEecccccHHHHHHHHHcCCCCCceecccchh---hhhHhhhhccccHHHHHHHH------H------HcCCcccC
Confidence            44444 34577877753 122234679999998752   12211111111001111110      0      12457999


Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGE  217 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~  217 (226)
                      |+++|+|+|.||+.+|++|+++|++|+++++++...       ....++++++..+|+++.. ...+++.++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~~e  337 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLD  337 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSBCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhhhHH
Confidence            999999999999999999999999999999875321       2456788999999987765 455666553

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.51  E-value=7.6e-08  Score=85.72  Aligned_cols=57  Identities=35%  Similarity=0.483  Sum_probs=44.8

Q ss_pred             chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCc-cCCCEEEEEcCChHHHHHHHHHcc-CCCEEEEEcCC
Q 027226          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET-LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRS  185 (226)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~-l~gktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r~  185 (226)
                      .++++--++..+...++.                .+.+ ++||||||+|+|+||+.+|++|++ |||+|++++++
T Consensus       187 ~~aTg~Gv~~~~~~~~~~----------------~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~  245 (419)
T 1gtm_A          187 IEATARGASYTIREAAKV----------------LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS  245 (419)
T ss_dssp             TTHHHHHHHHHHHHHHHH----------------TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcchhhHHHHHHHHHHHH----------------hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            455666655555554432                2456 999999999999999999999999 99999999654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.44  E-value=8.5e-08  Score=79.21  Aligned_cols=64  Identities=14%  Similarity=0.177  Sum_probs=47.6

Q ss_pred             CCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC--------------C---------CcccChhhhccc
Q 027226          145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--------------H---------SQVSCQSSGWHC  201 (226)
Q Consensus       145 ~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~--------------~---------~~~~~l~ell~~  201 (226)
                      .....++.+++|||||+|.+|+.+|+.|...|.+|++|+|++..              .         ....+++++++.
T Consensus        11 ~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~   90 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAG   90 (245)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHH
T ss_pred             cccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhc
Confidence            34568999999999999999999999999999999999998653              0         123456778889


Q ss_pred             CcEEEEe
Q 027226          202 KQVISIF  208 (226)
Q Consensus       202 sD~v~l~  208 (226)
                      +|++.+.
T Consensus        91 aDvVila   97 (245)
T 3dtt_A           91 AELVVNA   97 (245)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9999887

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.40  E-value=3.2e-07  Score=77.90  Aligned_cols=69  Identities=20%  Similarity=0.162  Sum_probs=49.5

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          132 NEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      +.+..+++++.|.....   ..++||||| +|.||..+|+.|+..|.+|++|+|+...     +.++.++.+|+|.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-----~~~~~~~~aDvVila   72 (298)
T 2pv7_A            3 RESYANENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----VAESILANADVVIVS   72 (298)
T ss_dssp             ----------CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----GHHHHHTTCSEEEEC
T ss_pred             hhHHhhhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-----CHHHHhcCCCEEEEe
Confidence            45556777788965321   357899999 9999999999999999999999987542     567888999999988

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.37  E-value=3.3e-07  Score=80.21  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=55.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcc-cCcEEEEeccCCccccc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWH-CKQVISIFNEKGFSSGE  217 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~-~sD~v~l~~~~d~i~~~  217 (226)
                      +|.||||+|+|+|++|+.+|++|..+|++|+++|+++...        ....+.++++. .+|+++.....+.|+.+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a~~~~I~~~  246 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDF  246 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTT
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccchHHHhCHH
Confidence            7999999999999999999999999999999999864321        12345567776 89999888777777654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.27  E-value=4.8e-06  Score=73.06  Aligned_cols=194  Identities=11%  Similarity=-0.001  Sum_probs=106.9

Q ss_pred             CCCCCCCCceEEEeCCCCCC------chhhHHHHHhcCCCeEEecC-------CCC-------ChhhhcCCceEEEEcCC
Q 027226            5 ARSSDKNITRVLFCGPHFPA------SHNYTKEYLQNYPSIQVDVV-------PIS-------DVPDVIANYHLCVVKTM   64 (226)
Q Consensus         5 ~~~~~~~~~~Ilv~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~adv~i~~~~   64 (226)
                      .+..+-++|+|-|.....+.      ..+..+.+.+...++.+..-       +.+       ++.+.++ +|+++.. .
T Consensus        15 ~~~~~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~-adiIlkV-k   92 (381)
T 3p2y_A           15 QTQGPGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWP-ADVVVKV-N   92 (381)
T ss_dssp             -----CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTT-SSEEECS-S
T ss_pred             cccCCCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeec-CCEEEEe-C
Confidence            34445667888887654321      12234445444333444321       111       1222233 7877754 3


Q ss_pred             CCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCC-CCc------hhHHHHHHHHHHHHhhcHHHHHH
Q 027226           65 RLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNA------ASCAELTIYLMLGLLRKQNEMRM  136 (226)
Q Consensus        65 ~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~-~~~------~~vAE~~l~~~L~~~R~~~~~~~  136 (226)
                      .++++.++.+ ++-.++..+.-..|.=..+.+.+++++..-.--... ..+      .++||.+=+..      ......
T Consensus        93 ~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~A------v~~aa~  166 (381)
T 3p2y_A           93 PPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKA------VLLGAS  166 (381)
T ss_dssp             CCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHH------HHHHHH
T ss_pred             CCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHH------HHHHHH
Confidence            4666777776 466666665554454445677889988754322200 001      23333332211      111111


Q ss_pred             HHHhCCCCC---CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----C------------------
Q 027226          137 AIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----S------------------  190 (226)
Q Consensus       137 ~~~~~~w~~---~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~------------------  190 (226)
                        .-++...   .....+.+++|+|+|+|.||..+|+.+++||++|+++|+++...     .                  
T Consensus       167 --~l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya  244 (381)
T 3p2y_A          167 --LSTRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYA  244 (381)
T ss_dssp             --HCSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC----------
T ss_pred             --HhhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccch
Confidence              0011111   12346789999999999999999999999999999999986431     0                  


Q ss_pred             ----------cccChhhhcccCcEEEEe
Q 027226          191 ----------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       191 ----------~~~~l~ell~~sD~v~l~  208 (226)
                                ....+++.++.+|+++..
T Consensus       245 ~~~~~~~~~~~~~~l~e~l~~aDIVI~t  272 (381)
T 3p2y_A          245 RELSEAERAQQQQALEDAITKFDIVITT  272 (381)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             hhhhHHHHhhhHHHHHHHHhcCCEEEEC
Confidence                      012567889999999764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.24  E-value=1.1e-05  Score=71.36  Aligned_cols=126  Identities=18%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             cCCceEEEEcCCCCCHHHHhcC-CCceEEEecCccCCccchhHHHhCCcEEEecCCCCC-CCc------hhHHHHHHHHH
Q 027226           53 IANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-GNA------ASCAELTIYLM  124 (226)
Q Consensus        53 ~~~adv~i~~~~~~~~~~l~~~-~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~-~~~------~~vAE~~l~~~  124 (226)
                      +.++|+++... .++++.++.+ ++-.++..+.-.-|.=..+.+.+++++..-.--... ..+      .++||.+=+..
T Consensus        88 ~~~adiIlkVk-~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~A  166 (405)
T 4dio_A           88 AKTADVILKVR-RPSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQA  166 (405)
T ss_dssp             GGGCSEEEEEE-CCCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHH
T ss_pred             hccCCEEEEeC-CCChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHH
Confidence            45688887543 3444556666 566666665554454445677889988843322100 001      23333332211


Q ss_pred             HHHhhcHHHHHHHHHhCC-CCCC--CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          125 LGLLRKQNEMRMAIEQKK-LGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       125 L~~~R~~~~~~~~~~~~~-w~~~--~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                            .......  -++ +...  ....+.+.+|+|+|+|.||..+|+.++++|++|+++|+++.
T Consensus       167 ------v~~aa~~--l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          167 ------VIDAAYE--YDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             ------HHHHHHH--CSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             ------HHHHHHH--hHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence                  1111100  011 1100  12467899999999999999999999999999999999864

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.23  E-value=5.2e-07  Score=81.26  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             CCCCCC-CCCccCC-CEEEEEcCChHHHHHHHHHccC------CCEEEEEcCCCCCC--------Ccc-----cChhhhc
Q 027226          141 KKLGVP-TGETLLG-KTVFILGFGNIGVELAKRLRPF------GVKIIATKRSWASH--------SQV-----SCQSSGW  199 (226)
Q Consensus       141 ~~w~~~-~~~~l~g-ktvgIvG~G~IG~~vA~~l~af------G~~V~~~~r~~~~~--------~~~-----~~l~ell  199 (226)
                      ++|..+ ....|.| +||||||+|.+|.++|+.|+..      |++|++..++....        ...     .++++++
T Consensus        40 ~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa  119 (525)
T 3fr7_A           40 GRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETV  119 (525)
T ss_dssp             CGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHH
T ss_pred             cccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHH
Confidence            456543 2578999 9999999999999999999987      99988655543222        121     4688999


Q ss_pred             ccCcEEEEe
Q 027226          200 HCKQVISIF  208 (226)
Q Consensus       200 ~~sD~v~l~  208 (226)
                      +.+|+|.++
T Consensus       120 ~~ADVVILa  128 (525)
T 3fr7_A          120 SGSDLVLLL  128 (525)
T ss_dssp             HHCSEEEEC
T ss_pred             hcCCEEEEC
Confidence            999999998

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.21  E-value=9.8e-07  Score=75.27  Aligned_cols=66  Identities=15%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      |.....+...-.+|||||+|.+|+.+|+.|...|.+|++|||++...        ....+++++++.+|++.+.
T Consensus        11 ~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~   84 (310)
T 3doj_A           11 SSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAM   84 (310)
T ss_dssp             -------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             ccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEE
Confidence            44444556667899999999999999999999999999999986542        1245788899999999987

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.12  E-value=6e-07  Score=74.78  Aligned_cols=131  Identities=18%  Similarity=0.175  Sum_probs=88.0

Q ss_pred             CCCCChhhhcCCce----EEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHH
Q 027226           44 VPISDVPDVIANYH----LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL  119 (226)
Q Consensus        44 ~~~~~~~~~~~~ad----v~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~  119 (226)
                      .+++++.+.+++.+    .+.+ +.+++.+++..++.+.-+.....|+|.++.    +.|    +..|+   |...    
T Consensus        38 ~~~~~l~~~i~~l~~~~~G~~v-t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~---ntd~----  101 (263)
T 2d5c_A           38 TPLEALPGRLKEVRRAFRGVNL-TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGF---NTDA----  101 (263)
T ss_dssp             CCGGGHHHHHHHHHHHCSEEEE-CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEE---CCHH----
T ss_pred             CCHHHHHHHHHhccccCceEEE-cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEe---CCCH----
Confidence            34455655554432    2222 347788888888888888888889998864    234    22233   3222    


Q ss_pred             HHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------Cc
Q 027226          120 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQ  191 (226)
Q Consensus       120 ~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~  191 (226)
                       .+++.++.|                 .+.++.| +++|||.|.+|+++|+.|..+|++|..++|+....        ..
T Consensus       102 -~g~~~~l~~-----------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~  162 (263)
T 2d5c_A          102 -PGFLEALKA-----------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR  162 (263)
T ss_dssp             -HHHHHHHHH-----------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE
T ss_pred             -HHHHHHHHH-----------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc
Confidence             233333322                 1346889 99999999999999999999999999999975321        11


Q ss_pred             ccChhhhcccCcEEEEecc
Q 027226          192 VSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       192 ~~~l~ell~~sD~v~l~~~  210 (226)
                      ..+++++ +.+|++++.-.
T Consensus       163 ~~~~~~~-~~~Divi~~tp  180 (263)
T 2d5c_A          163 AVPLEKA-REARLLVNATR  180 (263)
T ss_dssp             ECCGGGG-GGCSEEEECSS
T ss_pred             hhhHhhc-cCCCEEEEccC
Confidence            3457788 99999999843

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.10  E-value=1.3e-06  Score=75.63  Aligned_cols=60  Identities=27%  Similarity=0.370  Sum_probs=50.6

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+.+++|||||+|.||+.+|+.|+..|++|++++|+....        ....+++++++.+|+|++.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVila   79 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMIL   79 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEEC
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEe
Confidence            46888999999999999999999999999999999976431        1122677889999999988

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.08  E-value=2.1e-06  Score=64.82  Aligned_cols=56  Identities=18%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      +++|+|+|.|.+|+.+++.|+.+|++|..++|+....           ....++++++..+|+++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEe
Confidence            8999999999999999999999999999999975432           1245677888999998887

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.03  E-value=1.9e-06  Score=73.84  Aligned_cols=59  Identities=17%  Similarity=0.243  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ....++|||||+|.+|+.+|+.|...|.+|++|||++...        ....+++++++.+|++.+.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~   94 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSM   94 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEEC
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEE
Confidence            3456799999999999999999999999999999985432        1245788999999999887

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.02  E-value=4.2e-06  Score=71.67  Aligned_cols=76  Identities=13%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             HHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC------------Cc-cc-Chhh
Q 027226          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH------------SQ-VS-CQSS  197 (226)
Q Consensus       133 ~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~------------~~-~~-~l~e  197 (226)
                      +|+.+++...|.+.....--.++|||||+|.+|..+|+.|...| .+|++|+|++...            .+ .. ++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e   83 (317)
T 4ezb_A            4 HHHHSSGVDLGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVA   83 (317)
T ss_dssp             -----------CCCHHHHTSCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGG
T ss_pred             ccccccccccCcccCcccccCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHH
Confidence            44555666667654211112378999999999999999999999 9999999986210            01 34 7788


Q ss_pred             hcccCcEEEEe
Q 027226          198 GWHCKQVISIF  208 (226)
Q Consensus       198 ll~~sD~v~l~  208 (226)
                      +++.+|++.+.
T Consensus        84 ~~~~aDvVi~a   94 (317)
T 4ezb_A           84 GIACADVVLSL   94 (317)
T ss_dssp             GGGGCSEEEEC
T ss_pred             HHhcCCEEEEe
Confidence            99999999887

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.97  E-value=5.4e-06  Score=69.69  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|||||+|.+|+.+|+.|...|.+|++|+|++...        ....++++++..+|++.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~   64 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAM   64 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEE
Confidence            689999999999999999999999999999986542        1245788899999999887

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.96  E-value=7.2e-06  Score=69.67  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=42.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++||+||+|..|..+|+.|..-|++|++|||++...        ....+..|+...+|++.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~   68 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSV   68 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEEC
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeee
Confidence            589999999999999999999999999999987553        1256788999999998877

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.96  E-value=1.1e-05  Score=64.85  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .++.+++|+|||+|.+|+.+|+.|...|.+|++|+|++.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            467889999999999999999999999999999998743

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=97.20  E-value=1e-06  Score=70.70  Aligned_cols=58  Identities=22%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~l~ell~~sD~v~l~  208 (226)
                      +.+++|||||+|++|+.+|+.|...|++|++|+|+....      ....+++++++.+|++.+.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVila   80 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLA   80 (201)
Confidence            677899999999999999999999999999999976521      1122566788889988887

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.95  E-value=2.6e-06  Score=72.55  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++..++|||||+|.+|+.+|+.|...|.+|++|||++...        ....+++++++.+|++.+.
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~   72 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFV   72 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEEC
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEE
Confidence            4567899999999999999999999999999999986432        1246788999999999988

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.93  E-value=5.5e-06  Score=70.91  Aligned_cols=59  Identities=24%  Similarity=0.237  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-------C---cccChhh-hcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-------S---QVSCQSS-GWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-------~---~~~~l~e-ll~~sD~v~l~  208 (226)
                      ++..++|||||+|.||+.+|+.|+..|.  +|++|||++...       .   ...++++ +++.+|+|.+.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila  101 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS  101 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe
Confidence            3445899999999999999999999999  999999986321       1   1346778 89999999988

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.92  E-value=1.1e-05  Score=68.22  Aligned_cols=55  Identities=15%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .++|||||+|.+|+.+|+.|...|.+|++|||++...        ....+++++.. +|++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~   77 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHIT   77 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEE
Confidence            3689999999999999999999999999999987653        12357888888 9999887

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.91  E-value=9.3e-06  Score=69.31  Aligned_cols=59  Identities=19%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC--CCC--------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW--ASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~--~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .....+|||||+|.+|..+|+.|...|. +|++|||++  ...        ....++++++..+|++.+.
T Consensus        21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~   90 (312)
T 3qsg_A           21 QSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSL   90 (312)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEEC
T ss_pred             cCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEe
Confidence            3345799999999999999999999999 999999973  111        1235778889999999987

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.89  E-value=8.3e-05  Score=64.73  Aligned_cols=148  Identities=11%  Similarity=-0.017  Sum_probs=88.5

Q ss_pred             CceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEec---CCCCC--CCchhHHHHHH--HHHHHH
Q 027226           55 NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI---PGDVT--GNAASCAELTI--YLMLGL  127 (226)
Q Consensus        55 ~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~---~~~~~--~~~~~vAE~~l--~~~L~~  127 (226)
                      ++|+++....+...+.....+++.++......++.-..+.+.+.|+...|.   |....  ..-.+++|.+-  +.++..
T Consensus        66 ~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA  145 (361)
T 1pjc_A           66 SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA  145 (361)
T ss_dssp             TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH
Confidence            789877544333333333346777777666666654566677888887754   33210  01245555554  333333


Q ss_pred             hhcHHHHHHHHHhC--CCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C--------
Q 027226          128 LRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S--------  190 (226)
Q Consensus       128 ~R~~~~~~~~~~~~--~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~--------  190 (226)
                      . +....    ..|  -+-. ....+.+++|+|+|.|.+|+.+++.++.+|++|++++|++...       .        
T Consensus       146 ~-nt~~~----~~g~G~~l~-~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~  219 (361)
T 1pjc_A          146 R-FLERQ----QGGRGVLLG-GVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYS  219 (361)
T ss_dssp             H-HTSGG----GTSCCCCTT-CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEEC
T ss_pred             H-HHhhc----cCCCceecc-CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeC
Confidence            2 11111    111  1111 1134788999999999999999999999999999999975421       0        


Q ss_pred             cccChhhhcccCcEEEEe
Q 027226          191 QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       191 ~~~~l~ell~~sD~v~l~  208 (226)
                      ...++.+.+..+|+++..
T Consensus       220 ~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          220 NSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CHHHHHHHHHTCSEEEEC
T ss_pred             CHHHHHHHHcCCCEEEEC
Confidence            112345566778888654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.88  E-value=8.1e-06  Score=69.23  Aligned_cols=56  Identities=14%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------Cc-ccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~-~~~l~ell~~sD~v~l~  208 (226)
                      .++|||||+|.+|+.+|+.|...|.+|++|||++...        .. ..+++++++.+|++.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEE
Confidence            4689999999999999999999999999999975431        12 46788999999999988

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.85  E-value=5.5e-06  Score=69.64  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|||||+|.+|+.+|+.|...|.+|++|+|++...        ....+++++++.+|++.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEEC
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEE
Confidence            479999999999999999999999999999986543        1245788899999999888

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.83  E-value=6.9e-06  Score=68.88  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=85.4

Q ss_pred             CCCCChhhhcC-----CceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHH
Q 027226           44 VPISDVPDVIA-----NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAE  118 (226)
Q Consensus        44 ~~~~~~~~~~~-----~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE  118 (226)
                      .+++++.+.++     +.+.+.+. .+...+++..+..+.-......+++.+..    +.|-.    .|+   |....  
T Consensus        49 ~~~~~l~~~i~~l~~~~~~G~nvt-iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~---nTd~~--  114 (275)
T 2hk9_A           49 INPEELKKAFEGFKALKVKGINVT-VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGY---NTDWI--  114 (275)
T ss_dssp             CCGGGHHHHHHHHHHHTCCEEEEC-TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEE---CCHHH--
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEC-ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----Eee---cCCHH--
Confidence            34455554443     34455443 46677777777777666666677777653    23422    233   32221  


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------Cc-
Q 027226          119 LTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------SQ-  191 (226)
Q Consensus       119 ~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~-  191 (226)
                         +.+.++.+                 .+.++.+++++|||.|.+|+++|+.|...|++|..++|+....      .+ 
T Consensus       115 ---G~~~~l~~-----------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~  174 (275)
T 2hk9_A          115 ---GFLKSLKS-----------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL  174 (275)
T ss_dssp             ---HHHHHHHH-----------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCE
T ss_pred             ---HHHHHHHH-----------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCC
Confidence               33333321                 1236889999999999999999999999999999999985321      01 


Q ss_pred             --ccChhhhcccCcEEEEecc
Q 027226          192 --VSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       192 --~~~l~ell~~sD~v~l~~~  210 (226)
                        ..+++++++.+|++++.-.
T Consensus       175 ~~~~~~~~~~~~aDiVi~atp  195 (275)
T 2hk9_A          175 EVVNSPEEVIDKVQVIVNTTS  195 (275)
T ss_dssp             EECSCGGGTGGGCSEEEECSS
T ss_pred             eeehhHHhhhcCCCEEEEeCC
Confidence              1267788899999999833

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.81  E-value=2.5e-05  Score=68.43  Aligned_cols=62  Identities=24%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------Cc---ccChhhhcccCcEEEEe
Q 027226          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------SQ---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~~---~~~l~ell~~sD~v~l~  208 (226)
                      ....+.||||||+|.|.+|+.+++.++.+|++|+++|+.+...          ..   ...+.++...+|+++.-
T Consensus         8 ~~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A            8 TRIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            3456799999999999999999999999999999999875432          01   22366788888988543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.78  E-value=1.1e-05  Score=70.26  Aligned_cols=58  Identities=14%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccC---cEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCK---QVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~s---D~v~l~  208 (226)
                      +.+.+|||||+|.+|+.+|+.|...|.+|.+|||++...        ....++++++..+   |+|.+.
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEEC
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEe
Confidence            567899999999999999999999999999999975421        2245788898888   999887

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.77  E-value=1.1e-05  Score=68.68  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      |+||+||+|..|..+|+.|..-|.+|++|||++...        ....+..|+...+|++.+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~   66 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISM   66 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeec
Confidence            689999999999999999999999999999986442        2356788999999988765

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.75  E-value=2.1e-05  Score=65.62  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-------C---cccChhhhcc-cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-------S---QVSCQSSGWH-CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-------~---~~~~l~ell~-~sD~v~l~  208 (226)
                      ++|||||+|.+|+.+|+.|+..|.  +|++|+|++...       .   ...++++.+. .+|++.+.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc
Confidence            589999999999999999998888  999999975321       1   1346778888 99999988

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.71  E-value=8.9e-06  Score=70.50  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-cccChhhhccc----CcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-QVSCQSSGWHC----KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~~~~l~ell~~----sD~v~l~  208 (226)
                      ++|||||+|.||..+|+.|+..|.+|++|||++...       . ...+++++++.    +|+|.+.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEe
Confidence            579999999999999999999999999999975431       1 13466777664    6999887

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.64  E-value=0.00013  Score=61.34  Aligned_cols=67  Identities=18%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.+++||++.|+|.|. +|+.+|.+|...|++|+...++.      .+|.+.++++|+++.. ....+|..+..+
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  223 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------KDLSLYTRQADLIIVAAGCVNLLRSDMVK  223 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------SCHHHHHTTCSEEEECSSCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------hhHHHHhhcCCEEEECCCCCCcCCHHHcC
Confidence            4689999999999998 69999999999999999998753      3789999999999887 555566666553

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.63  E-value=2.4e-05  Score=63.15  Aligned_cols=58  Identities=29%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ..++|+|+|+|.+|+.+|+.|...|.+|++++|+....       ....++++++..+|++.+.-
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av   91 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAV   91 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECC
Confidence            45789999999999999999999999999999975321       11225678888999998873

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.60  E-value=2e-05  Score=65.28  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      .++.+.+|||||+|.+|+.+|+.+...|.+ |.+|+|++...        . ...++++++..+|++.+.
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a   75 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS   75 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe
Confidence            345567899999999999999999988998 89999975321        1 134677888899999887

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.59  E-value=2.1e-05  Score=66.00  Aligned_cols=54  Identities=24%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|...|.+|++|+|++...       . ...++++++..+|++.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~   63 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITM   63 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEEC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEe
Confidence            69999999999999999999999999999975431       1 134677888999999988

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.58  E-value=0.00018  Score=60.52  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|||.|. +|+.+|.+|...|++|+...++      ..+|++.++++|+++.. ...++|..+..+
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  224 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF------TTDLKSHTTKADILIVAVGKPNFITADMVK  224 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------CSSHHHHHTTCSEEEECCCCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC------chhHHHhcccCCEEEECCCCCCCCCHHHcC
Confidence            4689999999999998 6999999999999999998765      23789999999999887 555566666553

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.58  E-value=4.7e-05  Score=63.90  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------------------------CcccChhhhcc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------------------------SQVSCQSSGWH  200 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------------------------~~~~~l~ell~  200 (226)
                      ++|+|||.|.+|..+|..+...|++|+.||++....                                 ....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            799999999999999999999999999999975321                                 01245667788


Q ss_pred             cCcEEEEe
Q 027226          201 CKQVISIF  208 (226)
Q Consensus       201 ~sD~v~l~  208 (226)
                      .+|++.+.
T Consensus        85 ~aDlVi~a   92 (283)
T 4e12_A           85 DADLVIEA   92 (283)
T ss_dssp             TCSEEEEC
T ss_pred             cCCEEEEe
Confidence            89988887

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.57  E-value=0.00017  Score=60.75  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.|+++.|||.|. +|+.+|++|...|++|+...++.      .+|.+.++++|+++.. ....+|..+..+
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------~~L~~~~~~ADIVI~Avg~p~lI~~~~vk  222 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------KNLRHHVENADLLIVAVGKPGFIPGDWIK  222 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------SCHHHHHHHCSEEEECSCCTTCBCTTTSC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------hhHHHHhccCCEEEECCCCcCcCCHHHcC
Confidence            4689999999999997 59999999999999999997653      4789999999999988 444566666654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.56  E-value=0.00027  Score=59.37  Aligned_cols=67  Identities=10%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             CCccCCCEEEEEcCChH-HHHHHHHHccC--CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGNI-GVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~I-G~~vA~~l~af--G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|||.|.| |+.+|+.|...  |++|+...++.      .+|.+.++++|+++.. ....+|..+..+
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  223 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------RDLPALTRQADIVVAAVGVAHLLTADMVR  223 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------SCHHHHHTTCSEEEECSCCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------hHHHHHHhhCCEEEECCCCCcccCHHHcC
Confidence            45899999999999985 99999999999  89999987653      4789999999999988 444577666654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.54  E-value=0.00019  Score=60.47  Aligned_cols=67  Identities=21%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|+|.|. +|+.+|.+|...|++|+...++.      .+|++.++++|+++.. ....+|..+.++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  224 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------RDLADHVSRADLVVVAAGKPGLVKGEWIK  224 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------SCHHHHHHTCSEEEECCCCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------cCHHHHhccCCEEEECCCCCCCCCHHHcC
Confidence            4689999999999998 79999999999999999987652      3789999999999887 555566666553

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.53  E-value=6.4e-05  Score=61.93  Aligned_cols=56  Identities=13%  Similarity=0.128  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|||||+|.+|+.+++.|...|.+|.+|+|++...         ....++++++..+|++.+.-
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEe
Confidence            489999999999999999999999999999975321         11346778888999998873

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.53  E-value=8.4e-05  Score=62.22  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|||||+|.+|+.+|+.|...|.+|++|+ ++...        ....++++++..+|++.+.-
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEEC
Confidence            489999999999999999999999999999 65432        12356778888999999883

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.52  E-value=6.5e-05  Score=62.96  Aligned_cols=55  Identities=18%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+ |.+|+.+|+.|...|.+|++|+|++...       ....+..+.+..+|++.+.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEc
Confidence            58999999 9999999999999999999999975321       1123566788899999887

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.52  E-value=0.00026  Score=59.95  Aligned_cols=67  Identities=10%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.|+++.|||.|. +|+.+|++|...|++|+..+++      ..+|.+.++++|+++.. ....+|..+..+
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  228 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK------TAHLDEEVNKGDILVVATGQPEMVKGEWIK  228 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------CSSHHHHHTTCSEEEECCCCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC------cccHHHHhccCCEEEECCCCcccCCHHHcC
Confidence            4689999999999997 6999999999999999999765      34789999999999988 445566666654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.50  E-value=0.00018  Score=60.20  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=54.2

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       151 l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      ++||++.|+|.|. +|+.+|..|...|++|+.+.++      ..+|.+.++++|+++.. ....+|..+.++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk  213 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK------TKDIGSMTRSSKIVVVAVGRPGFLNREMVT  213 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------CSCHHHHHHHSSEEEECSSCTTCBCGGGCC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC------cccHHHhhccCCEEEECCCCCccccHhhcc
Confidence            9999999999997 7999999999999999999875      24789999999999887 444566666653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.49  E-value=5.5e-05  Score=64.23  Aligned_cols=55  Identities=15%  Similarity=0.140  Sum_probs=45.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+|.+|+.+|+.|...|.+|++|+|++...        ....++++++..+|++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~a   93 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFAC   93 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEEC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEe
Confidence            689999999999999999999999999999975532        0134567788899998887

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.48  E-value=4.1e-05  Score=64.42  Aligned_cols=56  Identities=18%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|||||+|.+|+.+|+.|...|.+|.+|+|++...        ....++++++..+|++.+.-
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEEC
Confidence            589999999999999999998999999999975321        11346778888999998883

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.48  E-value=6.3e-05  Score=62.75  Aligned_cols=55  Identities=16%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C-cccChhhhcccCcEEEEecc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S-QVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~-~~~~l~ell~~sD~v~l~~~  210 (226)
                      ++|||||+|.+|+.+|+.|.. |.+|.+|+|++...       . ... +++++..+|++.+.-.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCC
Confidence            479999999999999999999 99999999975431       1 122 6778889999988733

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.47  E-value=6.1e-05  Score=63.35  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCCC---------cccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHS---------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~---------~~~~l~ell~~sD~v~l~  208 (226)
                      ..+.|++++|+|.|.+|++++..|...|+ +|..++|+.....         ...++++.+..+|+++..
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVIna  182 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINT  182 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEEC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEEC
Confidence            46889999999999999999999999999 8999999864421         233456678899998876

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.46  E-value=0.00015  Score=62.05  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCC------C-----Cc------c--cChhhhcccCcEEEE
Q 027226          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS------H-----SQ------V--SCQSSGWHCKQVISI  207 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~------~-----~~------~--~~l~ell~~sD~v~l  207 (226)
                      +.++.|+++.|||.|.+ |+.+|+.|.+.|++|+..+|+...      .     ..      .  .+|.+.++++|+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            55899999999999985 999999999999999999886110      0     00      1  578899999999998


Q ss_pred             e-ccCCc-ccccccc
Q 027226          208 F-NEKGF-SSGEYCS  220 (226)
Q Consensus       208 ~-~~~d~-i~~~~~~  220 (226)
                      . ....+ |..+..+
T Consensus       252 Atg~p~~vI~~e~vk  266 (320)
T 1edz_A          252 GVPSENYKFPTEYIK  266 (320)
T ss_dssp             CCCCTTCCBCTTTSC
T ss_pred             CCCCCcceeCHHHcC
Confidence            8 33344 5555543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.46  E-value=8e-05  Score=61.45  Aligned_cols=53  Identities=23%  Similarity=0.330  Sum_probs=43.0

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|...|.+|++|+|...+.         .. .++++++..+|++.+.
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~   63 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISA   63 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEEC
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEE
Confidence            79999999999999999998899999998832111         11 4667888899999887

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.45  E-value=5.6e-05  Score=54.00  Aligned_cols=57  Identities=12%  Similarity=0.152  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+++|+|+|.|.||+.+++.|...| .+|++++|++...               .....+.+++...|++...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4679999999999999999999999 8999999975321               1123455677788887765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.45  E-value=0.00025  Score=60.09  Aligned_cols=67  Identities=18%  Similarity=0.321  Sum_probs=55.4

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChh--hhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQS--SGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~--ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.+++||++.|||.|. +|+.+|..|...|++|+.+.++.+      +|+  +.++++|+++.. ....+|..+.++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk  230 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------TEDMIDYLRTADIVIAAMGQPGYVKGEWIK  230 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------HHHHHHHHHTCSEEEECSCCTTCBCGGGSC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------CchhhhhhccCCEEEECCCCCCCCcHHhcC
Confidence            4689999999999998 699999999999999999987532      667  999999999887 444566665553

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.44  E-value=3.7e-05  Score=63.11  Aligned_cols=56  Identities=14%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC----EEEEEcCCCCCC---------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASH---------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~----~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ++|||||+|.+|+.+|+.|...|.    +|++|+|++...         ....+.++++..+|++.+.-
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav   71 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI   71 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe
Confidence            579999999999999999999998    999999975431         11346778888999998873

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.43  E-value=3.8e-05  Score=59.94  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccC-CCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  187 (226)
                      .++.+.+|+|+|+|.+|+.+|+.|+.. |.+|+++++++.
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            457788999999999999999999998 999999999753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.43  E-value=8e-05  Score=62.38  Aligned_cols=56  Identities=29%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~  208 (226)
                      -++|||||+|.+|+.+|+.|...  |.+|++|+|++...       .   ...++++++..+|++.+.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc
Confidence            36899999999999999999855  78999999975321       1   124667788899999887

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.41  E-value=0.00011  Score=61.01  Aligned_cols=53  Identities=25%  Similarity=0.270  Sum_probs=43.7

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C---cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~---~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|||+|.+|+.+|+.|...|.+|++|+|++...       .   ...+++++ ..+|++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~a   64 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLC   64 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEE
Confidence            79999999999999999999999999999975321       1   13467777 899999887

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.40  E-value=5.8e-05  Score=63.40  Aligned_cols=56  Identities=20%  Similarity=0.204  Sum_probs=46.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|+|||+|.+|+.+|+.|...|.+|.+|+|++...        ....++++++..+|++.+.-
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v   69 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITML   69 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEEC
Confidence            489999999999999999999999999999975421        11346778888999998883

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.39  E-value=8.9e-05  Score=62.87  Aligned_cols=56  Identities=13%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----C----------cccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----S----------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~----------~~~~l~ell~~sD~v~l~  208 (226)
                      -+.|+|||||+|.+|..+|..+. -|.+|++||+++...     .          ...++++ ++.+|+|...
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlViea   80 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEA   80 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEEC
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEc
Confidence            46799999999999999999999 999999999975321     0          0234444 6777777665

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.39  E-value=0.00011  Score=60.55  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC-C-cccChhhhcccCcEEEEecc
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH-S-QVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~-~-~~~~l~ell~~sD~v~l~~~  210 (226)
                      ..+|||||+|.+|+.+|+.|..-|    .+|..|+|++... . ...+.++++..+|++.+.-.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeC
Confidence            358999999999999999998778    6899999986531 1 12356778889999988733

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.37  E-value=0.00033  Score=57.03  Aligned_cols=54  Identities=22%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEE-EEEcCCCCCCCcccChhhhc-ccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V-~~~~r~~~~~~~~~~l~ell-~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+++.+..-|++| ..+|++.+......++++++ ..+|++.+.
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEEC
Confidence            7999999999999999998788997 68888753222356788888 689999887

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.35  E-value=9.2e-05  Score=62.16  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=45.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCC---EEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~---~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      .++|||||.|++|+.+|+.+..-|.   +|++|+|++...        . ...+..+.+..+|++.+.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVila   70 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLA   70 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEEC
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEE
Confidence            4789999999999999999998888   899999976431        1 124667788899998887

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.33  E-value=0.00018  Score=54.65  Aligned_cols=40  Identities=18%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .....+++|.|+|+|.+|+.+|+.|+..|.+|+++++++.
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3566789999999999999999999999999999998653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.33  E-value=0.00036  Score=52.43  Aligned_cols=60  Identities=12%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             CccCCCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      .-.+-++|+|||.    |.+|..+++.|...|++|+.++++.++.   ..+.+++++....|++++.
T Consensus        10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~   76 (138)
T 1y81_A           10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFV   76 (138)
T ss_dssp             ----CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEEC
T ss_pred             cccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEE
Confidence            4456789999999    9999999999999999999999875432   2356788888889998887

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.32  E-value=0.00022  Score=62.21  Aligned_cols=59  Identities=20%  Similarity=0.235  Sum_probs=47.1

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhcccCcEEEE
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~~sD~v~l  207 (226)
                      ..+.++||||+|.|.+|+.+++.++.+|++|+++|+.+...             .+...+.++...+|+++.
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            34678999999999999999999999999999999876543             012336667778888754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00011  Score=59.44  Aligned_cols=56  Identities=27%  Similarity=0.239  Sum_probs=43.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEE-EcCCCCCCC---------cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHS---------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~-~~r~~~~~~---------~~~~l~ell~~sD~v~l~  208 (226)
                      -.+|||||.|.+|+.+|+.|...|.+|++ ++|++....         ...+..+.+..+|++.+.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEe
Confidence            46899999999999999999988999999 999754320         112334557889998887

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.29  E-value=0.00012  Score=66.23  Aligned_cols=61  Identities=13%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------------CcccChhhhccc---CcEEEEec
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGWHC---KQVISIFN  209 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~~~~l~ell~~---sD~v~l~~  209 (226)
                      .-.+.++|||||+|.+|+.+|+.|...|.+|.+|+|++...            ....++++++..   +|+|.+.=
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~V   86 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMV   86 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEEC
Confidence            34667899999999999999999999999999999975321            113467777776   99998883

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.25  E-value=0.0002  Score=60.73  Aligned_cols=60  Identities=17%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C-----cc---cChhhhcccCcEEEEec
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S-----QV---SCQSSGWHCKQVISIFN  209 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~-----~~---~~l~ell~~sD~v~l~~  209 (226)
                      .+.+++++|+|.|.+|++++..|...|+ +|+.++|+....      .     ..   .++.+.+..+|+++...
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t  212 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTT  212 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECC
Confidence            5789999999999999999999999998 999999975321      0     11   24556778899998873

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.20  E-value=0.00013  Score=60.00  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=41.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|...| .+|.+|+|++...        . ...++++++ .+|++.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~   64 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILA   64 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEEC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEE
Confidence            7999999999999999999889 8999999975321        0 123456667 88888876

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.16  E-value=0.00019  Score=60.55  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999998899999999974

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.13  E-value=0.00017  Score=65.25  Aligned_cols=56  Identities=13%  Similarity=0.173  Sum_probs=45.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhcc---cCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWH---CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~---~sD~v~l~  208 (226)
                      ..+|||||+|.+|+.+|+.|...|.+|++|||++...             ....+++++..   .+|++.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEe
Confidence            3579999999999999999999999999999986421             01356777766   59998887

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.11  E-value=0.00029  Score=59.99  Aligned_cols=58  Identities=16%  Similarity=0.103  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHcc-CCC-EEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~a-fG~-~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      ...++|||||+|.+|+.+++.+.. +|. +|..|+|++...           ....++++++..+|+|++.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~a  203 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITV  203 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEEC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEE
Confidence            346799999999999999998864 587 899999975321           1145688899999999887

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.09  E-value=0.00025  Score=52.26  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+++++|+|.|.+|+.+++.|...|.+|+.++++.
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3567889999999999999999999999999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.07  E-value=0.00069  Score=51.17  Aligned_cols=59  Identities=8%  Similarity=0.093  Sum_probs=43.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC-----------CC--------CcccChhhh-cccCcEEEEecc
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----------SH--------SQVSCQSSG-WHCKQVISIFNE  210 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~-----------~~--------~~~~~l~el-l~~sD~v~l~~~  210 (226)
                      .++++.|+|+|.+|+.+++.|...|.+|+.+++.+.           ..        .....|++. +..+|++.+.-.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            356899999999999999999999999999999741           11        012234443 678888877743

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00033  Score=52.02  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .++++.|+|+|.+|+.+|+.|...|.+|+++++++.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            457899999999999999999999999999999753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.06  E-value=0.0004  Score=51.86  Aligned_cols=35  Identities=17%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..++.|+|+|.+|+.+|+.|+..|.+|+++++++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999754

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.04  E-value=0.00019  Score=59.46  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      +.| +++|+|.|..|++++..|...|+ +|+.++|+....         ....++++.++.+|+++..
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVIna  173 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNT  173 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEEC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEEC
Confidence            578 99999999999999999999999 899999975431         1234566778899999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.99  E-value=0.00069  Score=49.68  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.+|+|+|+|.+|+.+|+.|...|.+|+++++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.00059  Score=61.92  Aligned_cols=56  Identities=11%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhccc---CcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWHC---KQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~~---sD~v~l~~  209 (226)
                      .+|||||+|.+|+.+|+.|..-|.+|.+|+|++...             ....++++++..   +|+|.+.=
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEc
Confidence            589999999999999999999999999999975321             113467777766   99988873

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.95  E-value=0.00053  Score=54.46  Aligned_cols=54  Identities=24%  Similarity=0.281  Sum_probs=42.2

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+| .|.+|+.+++.|...|.+|++++|+....               ....++++.++.+|++.+.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~   71 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLT   71 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEEC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEe
Confidence            799999 99999999999999999999999974321               0113455667778887776

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.94  E-value=0.00061  Score=57.34  Aligned_cols=62  Identities=21%  Similarity=0.185  Sum_probs=47.1

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------------CcccChhhhcccCcEEEEec
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      +..+.|+++.|+|.|.+|++++..|...|+ +|..++|+....            ....+++++...+|+++...
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaT  195 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINST  195 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECS
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcC
Confidence            346889999999999999999999999997 999999975431            01224455556777777653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.89  E-value=0.00076  Score=57.55  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCC--CC-------C-cccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWA--SH-------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~--~~-------~-~~~~l~ell~~sD~v~l~  208 (226)
                      ....+|||||+|.+|..+|..|..-|    .+|++|+|+..  ..       . -..+..+.+..+|++.+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVila   91 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLA   91 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEE
Confidence            33457999999999999999998888    78999999864  11       1 123566778889998887

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.87  E-value=0.00062  Score=57.32  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------------------CcccChhhhcccCcEEEEec
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ..+.||++.|+|.|.+|++++..|...|+ +|..++|+....                  ....++++.+..+|+++...
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            36889999999999999999999999999 799999975431                  01225667788899988773

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.86  E-value=0.00072  Score=60.72  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            7999999999999999999999999999999764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.86  E-value=0.00045  Score=62.26  Aligned_cols=58  Identities=12%  Similarity=0.111  Sum_probs=45.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------------CcccChhhhccc---CcEEEEeccC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGWHC---KQVISIFNEK  211 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~~~~l~ell~~---sD~v~l~~~~  211 (226)
                      .+|||||+|.+|+.+|+.|...|.+|.+|+|++...            ....++++++..   +|+|.+.-..
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~   78 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQA   78 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCT
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccC
Confidence            579999999999999999999999999999974321            113467777765   9999888333

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.86  E-value=0.00072  Score=51.17  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=46.4

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCC--CCC---CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSW--ASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~--~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      -++|+|||.    |++|..+++.|...|++|+.+++..  ...   ..+.+++++-...|++++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~   77 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVF   77 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEE
Confidence            578999999    8999999999999999999999875  321   2246788888889999887

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.82  E-value=0.0053  Score=54.67  Aligned_cols=37  Identities=32%  Similarity=0.614  Sum_probs=33.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.++.|+||.|.|+|++|+.+|++|...|++|++++-
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD  266 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQD  266 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEc
Confidence            4579999999999999999999999999999996554

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.82  E-value=0.00096  Score=60.21  Aligned_cols=57  Identities=12%  Similarity=0.167  Sum_probs=44.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhc---ccCcEEEEecc
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGW---HCKQVISIFNE  210 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell---~~sD~v~l~~~  210 (226)
                      .+|||||+|.+|+.+|..|...|.+|.+|+|++...             ....++++++   +.+|+|.+.-.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp   75 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK   75 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCC
Confidence            479999999999999999999999999999975321             1134567776   48999888733

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.80  E-value=0.0011  Score=59.15  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +++..-.+|+|||+|.+|..+|..|.. |.+|++||+++.
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            456666799999999999999999988 999999999753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.76  E-value=0.0014  Score=53.36  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------C---cccChhhhcccCcEEEEeccCCcc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------S---QVSCQSSGWHCKQVISIFNEKGFS  214 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~---~~~~l~ell~~sD~v~l~~~~d~i  214 (226)
                      .-.+.|++|.|||.|.+|.+.++.|...|++|+.+++...+.         .   ...--++.+..+|++......+-+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~  104 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAV  104 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHH
Confidence            358999999999999999999999999999999999865432         0   011123456778877766443333

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.75  E-value=0.0013  Score=56.74  Aligned_cols=32  Identities=38%  Similarity=0.425  Sum_probs=28.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEE-EcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~-~~r~  185 (226)
                      -+|||.|||+||+.++|.+..+|++|.+ .|+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4899999999999999999999999988 5554

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.74  E-value=0.00032  Score=57.91  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=44.3

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .+|.+++.-..|.......|.+++|.|+|.|.+|..+|+.|...|. +|..+|+..
T Consensus        10 ~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           10 LRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3455555555575444567999999999999999999999999998 899999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.70  E-value=0.0026  Score=52.53  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------CcccChhhhccc-CcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGWHC-KQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~l~ell~~-sD~v~l~  208 (226)
                      ++++|.|.|.|-||+.+++.|..-|.+|++++|+....           .+...+++++.. .|+|+.+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~   70 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYC   70 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEe
Confidence            46789999999999999999998899999999975431           134456667776 8887655

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.69  E-value=0.0013  Score=55.27  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.++++.|+|.|.||+++|+.|...| +|+.++|+..
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~  161 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE  161 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHH
Confidence            578999999999999999999999999 9999999743

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.69  E-value=0.00072  Score=56.92  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=45.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC------C---cccChhhhcccCcEEEEec
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH------S---QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~------~---~~~~l~ell~~sD~v~l~~  209 (226)
                      ..+.|+++.|+|.|..|++++..|...|+ +|..++|+....      .   ...++++ + .+|+++...
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaT  186 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCT  186 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECS
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECC
Confidence            45889999999999999999999999999 899999985432      1   1223344 4 778877663

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.68  E-value=0.0011  Score=57.68  Aligned_cols=56  Identities=21%  Similarity=0.099  Sum_probs=44.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------C-----------cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------S-----------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~-----------~~~~l~ell~~sD~v~l~  208 (226)
                      ..+|+|||.|.+|.++|..|..-|.+|..|+|++...           +           -..++++.+..+|++.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence            4689999999999999999999999999999974321           0           024566788889988877

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.66  E-value=0.0024  Score=51.26  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-------C------cc-cChhhhcccCcEEEEe
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-------S------QV-SCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~------~~-~~l~ell~~sD~v~l~  208 (226)
                      ....+.|++|.|.|- |.||+++++.|..-|.+|++.+|+....       .      +. ..+.+.+...|+++..
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~   91 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFA   91 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence            457899999999997 9999999999999999999999975421       0      00 4556777778887655

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.65  E-value=0.001  Score=57.82  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=30.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC-------CEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG-------~~V~~~~r~~~  187 (226)
                      .+|+|||.|.+|..+|..|..-|       .+|+.|+|++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999997667       89999999765

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.64  E-value=0.0024  Score=57.18  Aligned_cols=33  Identities=15%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|||+|.+|..+|..|...|.+|++||++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            589999999999999999999999999999974

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.63  E-value=0.0012  Score=56.66  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC-------CEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG-------~~V~~~~r~~~  187 (226)
                      ..+|+|||.|.+|..+|..|..-|       .+|..|+|+..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            358999999999999999998777       89999999765

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.61  E-value=0.00068  Score=61.18  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhhcc---cCcEEEEecc
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGWH---CKQVISIFNE  210 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~ell~---~sD~v~l~~~  210 (226)
                      +|||||+|.+|+.+|..|...|.+|.+|+|++...                ....++++++.   .+|+|.+.-.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp   77 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQ   77 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCC
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecC
Confidence            69999999999999999999999999999974321                01345667666   4899888733

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.59  E-value=0.0011  Score=54.20  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+|||||+|.||..+|+.|+.-|.+|++|++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            58999999999999999999999999999983

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.58  E-value=0.0023  Score=53.19  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.|++++|+|.|.+|+++|+.|...|.+|+.++|+..
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~  153 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS  153 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            357899999999999999999999999999999999753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.55  E-value=0.0019  Score=57.19  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------C---cccChhhhcccCcEEEE
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------S---QVSCQSSGWHCKQVISI  207 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------~---~~~~l~ell~~sD~v~l  207 (226)
                      .-+.|++|+|+|-|.+|+.+++.++.+|.+|+.+|+.+...          .   +.+.+.++...+|+++.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999999999999999875542          1   12234556667888773

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.54  E-value=0.0022  Score=54.79  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .-+|+|||.|++|..+|..|..-|.+|..|+|++...                   ....+.++ +..+|++.+.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~   87 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIA   87 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEEC
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEE
Confidence            3589999999999999999988899999999974321                   00234556 7788887776

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.54  E-value=0.0032  Score=52.61  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCC-------cccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS-------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~-------~~~~l~ell~~sD~v~l~  208 (226)
                      +++++|+|.|.+|++++..|...|.+|..++|+.....       ...+++++ ..+|+++..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINA  179 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEc
Confidence            89999999999999999999999999999999876521       11123332 267777765

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.53  E-value=0.0024  Score=54.53  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ..+.||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            46889999999999999999999999999 899999983

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.50  E-value=0.0025  Score=56.69  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|||+|.+|..+|..|...|.+|++||+++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999964

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.46  E-value=0.0014  Score=55.67  Aligned_cols=56  Identities=18%  Similarity=0.083  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcC--CCCCC-------C-----------c-cc--ChhhhcccCcEEEEecc
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR--SWASH-------S-----------Q-VS--CQSSGWHCKQVISIFNE  210 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r--~~~~~-------~-----------~-~~--~l~ell~~sD~v~l~~~  210 (226)
                      +|+|||.|.+|..+|..|..-|.+|++|+|  ++...       .           . ..  ++++.+..+|++.+.-.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            799999999999999999988999999999  53211       0           0 11  45566788898887733

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.46  E-value=0.0051  Score=50.54  Aligned_cols=54  Identities=15%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEE-EcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~-~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|+|++|+.+++.+..-+-++.+ +++.....   .-..++++++ .+|+++-+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDf   61 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDF   61 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEe
Confidence            4899999999999999999866447665 78765432   1246788887 88987644

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.45  E-value=0.0028  Score=52.44  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|+|||.|.+|..+|..|..-|.+|++|+|+...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~   35 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccc
Confidence            7999999999999999999889999999997643

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.45  E-value=0.0051  Score=46.28  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             CCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      -++|+|||.    |++|..+++.|+..|++|+.+++.....   .-+.+++++-...|++++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~   84 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF   84 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE
Confidence            589999999    7999999999999999988888764321   1256788888889998887

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.43  E-value=0.0017  Score=58.31  Aligned_cols=33  Identities=12%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~  186 (226)
                      .+|+|||+|.+|..+|..|...  |.+|++||+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5899999999999999999877  89999999964

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.40  E-value=0.0042  Score=55.53  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=32.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -+++|||+|.+|..+|..|...|.+|++||+++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            58999999999999999999999999999998654

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=96.38  E-value=0.0034  Score=55.87  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC-----C--------CCcccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----S--------HSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~-----~--------~~~~~~l~ell~~sD~v~l~  208 (226)
                      ..-|+||||+|||||+-|.+=|.-|+--|.+|++=-|...     .        .....+.+|+.+.+|+|.++
T Consensus        32 ~~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L  105 (491)
T 3ulk_A           32 ASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINL  105 (491)
T ss_dssp             TGGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEEC
T ss_pred             hHHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEe
Confidence            4679999999999999999999999999999876555111     1        13456778999999999998

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.35  E-value=0.0068  Score=53.73  Aligned_cols=38  Identities=39%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.++.|+||.|.|+|++|+.+|++|..+|++|++++-+
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45899999999999999999999999999999965543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.31  E-value=0.015  Score=51.46  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=33.8

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHcc-CCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r~  185 (226)
                      +.++.|+||.|.|+|++|+.+|++|.. .|++|++++-+
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~  242 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS  242 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeC
Confidence            457999999999999999999999998 99999966543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.24  E-value=0.0086  Score=47.94  Aligned_cols=58  Identities=26%  Similarity=0.322  Sum_probs=45.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCC--EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +.++++.|.| .|.||+++++.|..-|.  +|++.+|++...               .+..++++++...|+++..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   91 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCC   91 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence            5679999999 69999999999999999  999999976432               1234566677777776655

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.24  E-value=0.0061  Score=45.69  Aligned_cols=57  Identities=16%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCC--CCCC---CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRS--WASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~--~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      +-++|.|||.    |++|..+++.++..|++|+.+++.  ..+.   .-+.+++++-...|++++.
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~   77 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF   77 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEE
Confidence            4589999999    899999999999999998888876  3221   2356788887889998887

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.23  E-value=0.00094  Score=53.45  Aligned_cols=58  Identities=14%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhh-cccCcEEEEeccCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSG-WHCKQVISIFNEKG  212 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~el-l~~sD~v~l~~~~d  212 (226)
                      +|.|+|+|.+|+.+|+.|...|.+|+++++++...                .....|++. +..+|++.+.-..|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence            58999999999999999999999999999865321                011223333 67788887774444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.21  E-value=0.0032  Score=56.10  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      --+|.++.|||+|.+|..+|..|...|.+|++||+++.
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35789999999999999999999999999999999754

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.18  E-value=0.0077  Score=51.29  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHcc-CCC-EEEEEcCCCCCC-----------C--cccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASH-----------S--QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~a-fG~-~V~~~~r~~~~~-----------~--~~~~l~ell~~sD~v~l~~  209 (226)
                      ..++++|||.|.+|+..++.+.. ++. +|..|+|+ +..           .  ...++++.++.+|+|++..
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT  191 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTAT  191 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEcc
Confidence            35899999999999999998875 454 79999999 432           0  1126788999999999873

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.17  E-value=0.0037  Score=53.71  Aligned_cols=55  Identities=13%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCC---------CcccChhhhc--ccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASH---------SQVSCQSSGW--HCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~---------~~~~~l~ell--~~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++.. |++|. .+|+++...         ..+.++++++  ...|+|.+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~   73 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIIT   73 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEEC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEe
Confidence            5899999999999999999987 88866 567764321         1367889999  568888876

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.15  E-value=0.0076  Score=53.42  Aligned_cols=39  Identities=26%  Similarity=0.341  Sum_probs=34.6

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.++.|+||.|.|+|++|+.+|++|..+|++|++++-+.
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            457999999999999999999999999999999765543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.14  E-value=0.0061  Score=47.28  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=43.7

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +++|.|.|- |.||+++++.|..-|.+|++++|++...               .+..++.+++...|++...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~   74 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            479999997 9999999999998899999999975321               1223456677788887665

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.12  E-value=0.012  Score=50.01  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=41.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCCC-----cccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHS-----QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~~-----~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|||+|+|++|+.+++.+... ++++. .++++.....     ...++++++...|++++..
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcC
Confidence            4799999999999999999866 68754 6777643321     1356778878889988773

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.10  E-value=0.0075  Score=53.43  Aligned_cols=38  Identities=37%  Similarity=0.546  Sum_probs=33.7

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +.++.|+||.|-|+|++|+.+|++|..+|++|++++-+
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~  253 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDA  253 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45799999999999999999999999999998765543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.10  E-value=0.0019  Score=53.26  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=42.1

Q ss_pred             HHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       132 ~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .+|.+++.-..|.......|.+++|.|+|.|.+|.++|+.|...|. ++..+|+.
T Consensus         7 ~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1            7 MRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3455555445565444568999999999999999999999999998 68888764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.04  E-value=0.0044  Score=51.52  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=35.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.+++++|+|.|.+|+++|..|...|.+|+.++|+..
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~  153 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS  153 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            357889999999999999999999999999999999853

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.03  E-value=0.011  Score=48.82  Aligned_cols=54  Identities=20%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEE-EcCCCCCC----CcccChhhhcccCcEEEEec
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASH----SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~-~~r~~~~~----~~~~~l~ell~~sD~v~l~~  209 (226)
                      -+..+|+++|+|+||+.+++. .  ++++.+ |+  .+..    .-..++|+++...|+|+-..
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~-~--~leLv~v~~--~k~gelgv~a~~d~d~lla~pD~VVe~A   68 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL-G--NFEKIYAYD--RISKDIPGVVRLDEFQVPSDVSTVVECA   68 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH-S--CCSEEEEEC--SSCCCCSSSEECSSCCCCTTCCEEEECS
T ss_pred             cccceEEEECcCHHHHHHHhc-C--CcEEEEEEe--ccccccCceeeCCHHHHhhCCCEEEECC
Confidence            356799999999999999998 4  887644 44  2221    12466888888888888774

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.03  E-value=0.0068  Score=51.74  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      +..+.||++.|+|.|.+|++++..|...|+ +|..++|+.
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            356899999999999999999999999999 899999983

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.03  E-value=0.0094  Score=53.74  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CC-EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GV-KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~-~V~~~~r~~~  187 (226)
                      .+|+|||+|.+|..+|..|... |. +|++||++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5899999999999999999988 99 9999999876

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.02  E-value=0.0058  Score=51.05  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|||.|.+|..+|..|..-|.+|+.|+|++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            489999999999999999998899999999974

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.02  E-value=0.014  Score=51.05  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=57.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC----CCCC------------------CcccChhhhcccCcE
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS----WASH------------------SQVSCQSSGWHCKQV  204 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~----~~~~------------------~~~~~l~ell~~sD~  204 (226)
                      +..+.+.+|.|+|.|..|..+|+.+.++|. +|+.+||+    ....                  ....+|.+.+..+|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            457999999999999999999999999999 89999997    3210                  124569999999999


Q ss_pred             EEEeccCCccccccc
Q 027226          205 ISIFNEKGFSSGEYC  219 (226)
Q Consensus       205 v~l~~~~d~i~~~~~  219 (226)
                      +.-.....++..+..
T Consensus       267 lIG~Sap~l~t~emV  281 (388)
T 1vl6_A          267 FIGVSRGNILKPEWI  281 (388)
T ss_dssp             EEECSCSSCSCHHHH
T ss_pred             EEEeCCCCccCHHHH
Confidence            888755566555544

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.02  E-value=0.0057  Score=51.80  Aligned_cols=62  Identities=11%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      ......+++|.|.|- |-||+++++.|..-|.+|++.+|+....         .+...+++++...|+|+.+
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHL   84 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEEC
Confidence            457889999999997 9999999999999999999999976432         2344567788888988765

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.01  E-value=0.0012  Score=55.06  Aligned_cols=53  Identities=13%  Similarity=0.101  Sum_probs=35.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEE-EEEcCCCCCC------C--cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASH------S--QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V-~~~~r~~~~~------~--~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|... .+| .+|+|+....      .  ...++++++..+|++.+.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVila   65 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVI   65 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEEC
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEe
Confidence            699999999999999999866 888 4899874321      1  134566777888988877

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.00  E-value=0.0078  Score=48.53  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=36.9

Q ss_pred             CEEEEEcCChHHHHHHHH--HccCCCEEEE-EcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~--l~afG~~V~~-~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|.|++|+++++.  ....|+++.+ +|..+...         ....+++++++..|++.+.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEe
Confidence            469999999999999994  4567888664 66665543         1356788888766877776

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.00  E-value=0.0069  Score=48.71  Aligned_cols=59  Identities=19%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCC-CEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG-~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ....++|.|.| .|.||+++++.|..-| .+|++++|++...               .+..++++++...|+++..
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~   95 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN   95 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence            34568999999 7999999999999999 8999999975431               1234566778888888644

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.00  E-value=0.0058  Score=52.18  Aligned_cols=56  Identities=27%  Similarity=0.169  Sum_probs=43.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C-----------------cccChhhhcccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S-----------------QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~-----------------~~~~l~ell~~sD~v~l~~  209 (226)
                      .+|+|||.|.+|..+|..|...|.+|.+|+|++...      .                 ...++++++..+|++.+.-
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            589999999999999999999999999999974221      0                 1234566677888888773

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.97  E-value=0.015  Score=51.41  Aligned_cols=36  Identities=28%  Similarity=0.597  Sum_probs=32.7

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~  183 (226)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|++++
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavs  248 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVA  248 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            457999999999999999999999999999999544

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.97  E-value=0.0068  Score=48.06  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=44.9

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ++|.|.| .|.||+++++.|..-|.+|++.+|++...              .+..++++++...|+|....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            6899999 69999999999999999999999975431              12344667888888877653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.95  E-value=0.0084  Score=50.05  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=46.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-----------CcccChhhhc-ccCcEEEEe
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------SQVSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-----------~~~~~l~ell-~~sD~v~l~  208 (226)
                      +..+.||++.|+|.|.+|++++..|...|+ +|..++|+....           ....+++++- ..+|+++..
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivIna  188 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNA  188 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEEC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEEC
Confidence            346899999999999999999999999997 999999975431           0112333332 677887766

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.94  E-value=0.0097  Score=47.05  Aligned_cols=54  Identities=24%  Similarity=0.266  Sum_probs=43.7

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------Cc-ccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~-~~~l~ell~~sD~v~l~  208 (226)
                      +|.|.| .|.||+++++.|..-|.+|++.+|+....             .+ ..++.+++...|+++..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            688998 89999999999999999999999986431             12 34566788888888765

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.94  E-value=0.0037  Score=53.47  Aligned_cols=55  Identities=15%  Similarity=0.142  Sum_probs=42.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCC---------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASH---------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~---------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++.. +++|. .+|+++...         ..+.++++++.  ..|+|.+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~   72 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIG   72 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEe
Confidence            4899999999999999998866 78877 577754321         13567899998  78888876

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.92  E-value=0.0064  Score=54.24  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .++.||+|.|||+|.+|.++|+.|+..|.+|.++|...
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999999865

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.90  E-value=0.0038  Score=53.11  Aligned_cols=55  Identities=20%  Similarity=0.125  Sum_probs=43.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC--------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH--------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~--------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.+... +++|.+ +|+++...        ..+.++++++.  ..|+|.+.
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   70 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVIC   70 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEe
Confidence            5899999999999999999875 888874 77764321        12678889987  78888776

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.86  E-value=0.0072  Score=52.08  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|||.|.+|..+|..|..-|.+|.+|+|+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999998899999999974

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.86  E-value=0.0071  Score=49.63  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=45.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|.|.| .|.||+++++.|..-|.+|+..+|+....            .+..++++++...|+++..
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            468999998 79999999999999999999999986432            1234566778888877655

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.82  E-value=0.0099  Score=50.51  Aligned_cols=55  Identities=9%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCC--------C--cccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASH--------S--QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~--------~--~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++.. +++|. .+|+++...        .  .+.++++++.  ..|+|.+.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~   74 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVA   74 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEEC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEC
Confidence            5899999999999999888755 56766 457765432        1  2567899998  67888776

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.82  E-value=0.0077  Score=50.65  Aligned_cols=56  Identities=13%  Similarity=0.055  Sum_probs=43.8

Q ss_pred             CCEEEEEcCChHHHH-HHHHHcc-CCCEEE-EEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~-vA~~l~a-fG~~V~-~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+|||||+|.||+. .++.++. -++++. .+|+++...         ..+.++++++...|+|.+.
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEEC
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEe
Confidence            468999999999996 8887875 478887 578764321         1367889999999999887

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.79  E-value=0.0078  Score=53.80  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------C--------c---ccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------S--------Q---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~--------~---~~~l~ell~~sD~v~l~  208 (226)
                      .+++|+|+|.|.||+++++.|...|.+|..++|+....      .        +   ..++++++...|+|+..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            47899999999999999999999999999999864211      0        1   12455677788887765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.79  E-value=0.0079  Score=47.67  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             CCEEEEEc-CChHHHHHHHHHc-cCCCEEEEEcCCCC--------CC----------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILG-FGNIGVELAKRLR-PFGVKIIATKRSWA--------SH----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~-afG~~V~~~~r~~~--------~~----------~~~~~l~ell~~sD~v~l~  208 (226)
                      .|++.|.| .|.||+++++.|. .-|.+|++++|++.        ..          .+..++++++...|+++..
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            37899999 6999999999999 89999999999755        11          1234456677778877754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.75  E-value=0.0033  Score=55.65  Aligned_cols=56  Identities=21%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhh-cccCcEEEEec
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSG-WHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~el-l~~sD~v~l~~  209 (226)
                      ..|.|+|+|++|+.+|+.|+..|.+|+++++.+...               .....|.++ +..+|++++.-
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence            469999999999999999999999999999875421               012223333 57788877763

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.72  E-value=0.017  Score=48.61  Aligned_cols=40  Identities=20%  Similarity=0.186  Sum_probs=36.3

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ....+.+++|.|.|- |.||+++++.|..-|.+|++.+|..
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            457899999999987 9999999999999999999999854

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=95.71  E-value=0.016  Score=49.01  Aligned_cols=54  Identities=26%  Similarity=0.234  Sum_probs=36.3

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEE-EEcCCCCCC----C---cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASH----S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~-~~~r~~~~~----~---~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+|.||+.+++.++. =++++. .+++++...    .   ...++.+. ...|++.+.
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViia   72 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVC   72 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEEC
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEEC
Confidence            589999999999999999875 478887 478765431    1   12334444 577888776

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=95.70  E-value=0.031  Score=47.26  Aligned_cols=67  Identities=12%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             CCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|||-+.| |+-+|.+|..-|++|+....+      ..+|.+.+++||+++.. ....||-.++.+
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~------T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk  242 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR------TQNLPELVKQADIIVGAVGKAELIQKDWIK  242 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------CSSHHHHHHTCSEEEECSCSTTCBCGGGSC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC------CCCHHHHhhcCCeEEeccCCCCcccccccc
Confidence            56899999999999875 999999999999999887554      23789999999999988 666677666654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.68  E-value=0.022  Score=48.45  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             CCEEEEEcCChHHHH-HHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++|.+||.|.+|.. +|+.|+..|++|.++|....+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~   40 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP   40 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc
Confidence            479999999999995 999999999999999987543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.68  E-value=0.0041  Score=53.42  Aligned_cols=56  Identities=11%  Similarity=0.064  Sum_probs=43.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccC--CCEEE-EEcCCCCCC---------CcccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASH---------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~af--G~~V~-~~~r~~~~~---------~~~~~l~ell~--~sD~v~l~  208 (226)
                      -.+|||||+|.||+..++.++..  ++++. .+|+++...         ..+.++++++.  ..|+|.+.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   82 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILT   82 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEEC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEC
Confidence            35899999999999999999876  88866 667764331         13578889987  78888876

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.66  E-value=0.015  Score=47.77  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=32.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .++|.|.|.|.||+.+++.|..-|.+|++.+|+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            37899999999999999999999999999999764

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.64  E-value=0.0058  Score=52.26  Aligned_cols=55  Identities=13%  Similarity=0.107  Sum_probs=42.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC--------C--cccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH--------S--QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~--------~--~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.+... ++++.+ +|+++...        .  .+.++++++.  ..|+|.+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   71 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVC   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEc
Confidence            4799999999999999999765 788774 67764321        1  3678899988  78888876

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.64  E-value=0.0089  Score=53.87  Aligned_cols=36  Identities=33%  Similarity=0.564  Sum_probs=33.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .++.|+||.|-|+|++|+.+|+.|..+|++|++++-
T Consensus       240 ~~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsD  275 (501)
T 3mw9_A          240 PGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGE  275 (501)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            368999999999999999999999999999998654

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.61  E-value=0.0089  Score=51.02  Aligned_cols=56  Identities=14%  Similarity=0.039  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHcc-CC-CEEEEEcCCCCCC-------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASH-------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~a-fG-~~V~~~~r~~~~~-------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..++++|||.|.+|+..++.+.. .+ -+|..|+|++...             ....++++++ .+|+|++.
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~a  194 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTT  194 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEEC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEe
Confidence            45899999999999999998875 44 4799999975331             0145677888 99999887

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.61  E-value=0.016  Score=51.70  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             CCccCCCEEEEEcCC----------hHHHHHHHHHccCCCEEEEEcCCCCCC-------Cc-ccChhhhcccCcEEEEe
Q 027226          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASH-------SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       148 ~~~l~gktvgIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~-~~~l~ell~~sD~v~l~  208 (226)
                      +..+.|++|+|+|+.          +-...+++.|...|++|.+|||...+.       .. ..++++.+..+|.++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~  395 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIV  395 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEEC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEe
Confidence            457899999999997          778999999999999999999976321       11 24567889999999998

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.59  E-value=0.0075  Score=52.05  Aligned_cols=56  Identities=9%  Similarity=0.052  Sum_probs=42.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC--------CcccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH--------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~--------~~~~~l~ell~--~sD~v~l~  208 (226)
                      ..+|||||+|.||+..++.++.. +++|.+ +|+++...        ..+.++++++.  ..|+|.+.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~   72 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIA   72 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEEC
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEc
Confidence            35899999999999999999877 788875 57654221        23567899987  67888776

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.58  E-value=0.0058  Score=52.05  Aligned_cols=55  Identities=13%  Similarity=0.032  Sum_probs=42.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC----------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH----------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~----------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++.. +++|.+ +|+++...          ..+.++++++.  ..|+|.+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   74 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIP   74 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEEC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEc
Confidence            5899999999999999999875 778774 67764321          13568899987  77888876

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.55  E-value=0.026  Score=50.28  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.++.|+||.|=|+|++|+.+|++|...|++|++.+-
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD  266 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASD  266 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEec
Confidence            3579999999999999999999999999999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.51  E-value=0.011  Score=49.37  Aligned_cols=39  Identities=23%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.+.|++|.|+|.|.+|.+.++.|...|++|+.+++...
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            468999999999999999999999999999999998643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.49  E-value=0.0082  Score=49.23  Aligned_cols=38  Identities=34%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|+||++.|-|.+   .||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999975   599999999999999999999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.48  E-value=0.039  Score=48.38  Aligned_cols=99  Identities=13%  Similarity=0.179  Sum_probs=72.6

Q ss_pred             CcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-
Q 027226           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (226)
Q Consensus        99 gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-  177 (226)
                      +|++.|. +.     .-+|=-+++.+++..|                ..+..+...+|.|+|.|..|..+|+++.++|. 
T Consensus       156 ~ipvf~D-Di-----qGTa~V~lAall~al~----------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-DQ-----HGTAIVVLAAIFNSLK----------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-HH-----HHHHHHHHHHHHHHHH----------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-hh-----hhHHHHHHHHHHHHHH----------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5888872 32     4455566666666665                13568999999999999999999999999999 


Q ss_pred             EEEEEcCCC-----C-CC---------------CcccChhhhcccCcEEEEeccCCccccccc
Q 027226          178 KIIATKRSW-----A-SH---------------SQVSCQSSGWHCKQVISIFNEKGFSSGEYC  219 (226)
Q Consensus       178 ~V~~~~r~~-----~-~~---------------~~~~~l~ell~~sD~v~l~~~~d~i~~~~~  219 (226)
                      +|+.+|++.     + ..               ....+|.|.+..+|++.=....+.+..+..
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmV  276 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVLKAEWI  276 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCSTTCCCHHHH
T ss_pred             eEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecCCCCCCCHHHH
Confidence            999999973     1 11               014568899999998877755555555443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.46  E-value=0.022  Score=48.21  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC--------------------------CcccChhhhcccC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH--------------------------SQVSCQSSGWHCK  202 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------------------~~~~~l~ell~~s  202 (226)
                      .+.+++|.|.| .|-||+.+++.|..-|.+|++.+|+....                          .+...+++++...
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            45689999999 69999999999999999999999965431                          1233456677788


Q ss_pred             cEEEEe
Q 027226          203 QVISIF  208 (226)
Q Consensus       203 D~v~l~  208 (226)
                      |+|+.+
T Consensus       102 d~Vih~  107 (351)
T 3ruf_A          102 DHVLHQ  107 (351)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            877655

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.44  E-value=0.033  Score=49.54  Aligned_cols=59  Identities=14%  Similarity=0.129  Sum_probs=50.9

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHccC-CCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG----------NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G----------~IG~~vA~~l~af-G~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+|+|+-          +-...+++.|... |++|.+|||...+.....++++.+..+|.++++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~~~~~~~~~~~~~ad~vvi~  381 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLIL  381 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCTTBCSTTHHHHTTCSEEEEC
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccccccCCHHHHHhCCCEEEEe
Confidence            4689999999973          4578999999998 999999999877655566788999999999998

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.42  E-value=0.016  Score=49.50  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++...
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~  212 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHK  212 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            5789999999999999999999999999999987654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.41  E-value=0.015  Score=51.03  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=29.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|||+|.+|..+|..|.. |.+|++|++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            79999999999999999999 99999999974

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.41  E-value=0.015  Score=49.35  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|+|.|.+|..+|..|..-|.+|..|+|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999998899999999974

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.41  E-value=0.014  Score=52.22  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=31.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999874

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=95.37  E-value=0.024  Score=47.81  Aligned_cols=55  Identities=15%  Similarity=0.049  Sum_probs=40.1

Q ss_pred             CEEEEEcCChHHHH-HHHHHcc-CCCEEE-EEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~a-fG~~V~-~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      .+|||||+|.||+. .++.++. -|+++. .+|+++...        . ...+++++....|+|.+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEe
Confidence            58999999999996 8887765 478876 778875532        1 244566665678888877

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.37  E-value=0.022  Score=47.47  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhcc--cCcEEEEe
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+++|.|.| .|.||+.+++.|..-|.+|++.+|+..-+ .+...+++++.  ..|+|+..
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~   62 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA   62 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEc
Confidence            357899999 59999999999999999999998865433 23455677777  78887655

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.37  E-value=0.012  Score=50.84  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~  222 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPS  222 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            689999999999999999999999999999998653

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.36  E-value=0.013  Score=49.52  Aligned_cols=52  Identities=25%  Similarity=0.382  Sum_probs=34.7

Q ss_pred             HHHHHhCCCCC-CCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          135 RMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       135 ~~~~~~~~w~~-~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .+++.-..|.. .....|++++|.|+|.|.+|..+|+.|...|. ++..+|...
T Consensus        17 ~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           17 RGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             ---------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            34444455765 45678999999999999999999999998897 788888754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.36  E-value=0.01  Score=51.20  Aligned_cols=38  Identities=29%  Similarity=0.502  Sum_probs=35.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.|++|.|+|.|.||..+++.++.+|++|++.+++.
T Consensus       177 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~  214 (366)
T 2cdc_A          177 GTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE  214 (366)
T ss_dssp             SSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35779999999999999999999999999999999875

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.33  E-value=0.019  Score=50.39  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----C-----------cccChhhhcccCcEEEE
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----S-----------QVSCQSSGWHCKQVISI  207 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~-----------~~~~l~ell~~sD~v~l  207 (226)
                      ..+.+++|+|+|-|.+|+.+++.++.+|.+|+.++ .+...    .           +...+.++...+|+++.
T Consensus        20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           20 HMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            34568999999999999999999999999999999 54332    0           12235567777888765

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.29  E-value=0.022  Score=46.75  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcc--cCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~--~sD~v~l~  208 (226)
                      +|.|.| .|.||+++++.|..-|.+|++.+|..-+-.+...+++++.  ..|+|+.+
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~   63 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHC   63 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEEC
Confidence            899999 5999999999999999999999996444344556777777  47877655

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.26  E-value=0.01  Score=47.82  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=42.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC------C--------CcccChhhh-cccCcEEEEeccCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS------H--------SQVSCQSSG-WHCKQVISIFNEKG  212 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~--------~~~~~l~el-l~~sD~v~l~~~~d  212 (226)
                      .+++.|+|+|.+|+.+|+.|...|. |+++++.+..      .        .....|++. +..+|.+.+....|
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD   82 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc
Confidence            4689999999999999999999999 9999987542      1        011223333 67788887764433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.25  E-value=0.011  Score=51.06  Aligned_cols=54  Identities=20%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|.|.+|+.+|+.|+. ..+|...+++.+..              .+...|+++++.+|+|+..
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            479999999999999999976 46888888764221              1245577888999988776

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.24  E-value=0.015  Score=49.21  Aligned_cols=55  Identities=11%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             CEEEEEcCChHHH-HHHHHHccC-CCEEEEEcCCCCCC--------Cc--ccChhhhc-ccCcEEEEe
Q 027226          154 KTVFILGFGNIGV-ELAKRLRPF-GVKIIATKRSWASH--------SQ--VSCQSSGW-HCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~-~vA~~l~af-G~~V~~~~r~~~~~--------~~--~~~l~ell-~~sD~v~l~  208 (226)
                      .+|||||+|.||+ ..++.++.. +++|..+|+++...        ..  ..+..+++ +..|+|.+.
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEE
Confidence            4799999999999 488888765 78888888865321        11  33344555 678888887

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.23  E-value=0.045  Score=45.79  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.+++|.|.|- |.||+.+++.|..-|.+|++.+|+
T Consensus         7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3577899999997 999999999999999999999885

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.23  E-value=0.011  Score=53.23  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -++|||||.|.+|..+|..+..-|.+|+.||++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            36899999999999999999999999999999753

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.17  E-value=0.016  Score=49.73  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++...
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~  215 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK  215 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4789999999999999999999999999999987554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.12  E-value=0.012  Score=46.97  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=45.2

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccC--CCEEEEEcCCCCC------C--------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPF--GVKIIATKRSWAS------H--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~af--G~~V~~~~r~~~~------~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+++|.|.| .|.||+++++.|..-  |.+|++.+|++..      .        .+..++++++...|+++..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4578999998 699999999999988  8999999996421      1        1234566788888887765

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.12  E-value=0.024  Score=48.93  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEeccCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIFNEKG  212 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~~~~d  212 (226)
                      ..+++||||.|.+|+..++.+. ..+. +|..|+|++...               ....++++++..+|+|++...+.
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC
Confidence            4689999999999999988764 3454 799999974321               11356788899999998885443

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.11  E-value=0.012  Score=49.16  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=28.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-----C-CEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-----G-VKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-----G-~~V~~~~r  184 (226)
                      .+|+|||.|.+|..+|..|..-     | .+|+.|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            3799999999999999999877     8 89999998

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.11  E-value=0.015  Score=49.64  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+|+|||.|.+|..+|..|..-|.+|..|+|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            368999999999999999999889999999984

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.10  E-value=0.023  Score=47.30  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|+| .|.||+++++.|...|++|+.++|+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            47889999999 99999999999999999999999973

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.09  E-value=0.03  Score=46.01  Aligned_cols=58  Identities=21%  Similarity=0.227  Sum_probs=44.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcc--cCcEEEEe
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~--~sD~v~l~  208 (226)
                      -+.++|.|.| .|-||+++++.|..-|.+|++++|+.-+-.+...+++++.  ..|+|+..
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEEC
Confidence            4558888887 5999999999999999999999997433334556777777  57887655

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.07  E-value=0.013  Score=49.52  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=30.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|+|.|.+|..+|..|..-|.+|..|+|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999998899999999974

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.07  E-value=0.02  Score=47.37  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             CCCCCCCccCCCEEEEEcC-Ch--HHHHHHHHHccCCCEEEEEcCCC
Q 027226          143 LGVPTGETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~-G~--IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |.......+.||++.|.|- |.  ||+++|+.|..-|++|+..+|+.
T Consensus        16 ~~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           16 PRGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             ------CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4444556799999999996 44  99999999999999999999876

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.05  E-value=0.021  Score=45.87  Aligned_cols=54  Identities=13%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             CEEEEEcCChHHHHHHHH--HccCCCEEEE-EcCCCCCC---------CcccChhhhccc-CcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASH---------SQVSCQSSGWHC-KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~--l~afG~~V~~-~~r~~~~~---------~~~~~l~ell~~-sD~v~l~  208 (226)
                      ++|+|+|.|++|+++++.  ... |+++.+ +|..+...         ....+++++++. .|.+.+.
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA  147 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLT  147 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEEC
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEe
Confidence            689999999999999995  345 898665 56554432         135678888875 5665554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.04  E-value=0.019  Score=49.10  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .-.+|+|||.|.+|..+|..+..-|++|+.||+++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            347899999999999999999999999999998743

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=95.04  E-value=0.012  Score=50.82  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=41.5

Q ss_pred             CCEEEEEcCChHHHH-HHHHHccC-CCEEE-EEcCCCCCC----------CcccChhhhcccC--cEEEEe
Q 027226          153 GKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASH----------SQVSCQSSGWHCK--QVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~-vA~~l~af-G~~V~-~~~r~~~~~----------~~~~~l~ell~~s--D~v~l~  208 (226)
                      ..+|||||+|.||+. .++.++.. +++|. .+|+++...          ..+.++++++...  |+|.+.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~   75 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMA   75 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEc
Confidence            358999999999995 88888766 78877 567754321          1256889999765  777776

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.03  E-value=0.022  Score=48.63  Aligned_cols=60  Identities=22%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccC-CCEEEEEcCCCCCC----------------C-cccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASH----------------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~~~----------------~-~~~~l~ell~~sD~v~l~  208 (226)
                      ..+.+++|.|.| .|-||+.+++.|..- |.+|++++|+....                . +...+++++...|+|..+
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~   98 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPL   98 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEEC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEc
Confidence            457789999999 799999999999877 99999999976442                0 223355667778877654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.03  E-value=0.025  Score=47.23  Aligned_cols=55  Identities=13%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             CEEEEEc-CChHHHHHHHHHc-cCCCEEEE-EcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~-afG~~V~~-~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+| +|++|+.+++.+. .=++++.+ ++++..+.               .-..++++++..+|+++-.
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEc
Confidence            5899999 9999999999886 55888777 67764321               0136788888888888765

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.03  E-value=0.037  Score=49.56  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=33.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.++.|+||.|-|+|++|+.+|++|..+|++|++++-
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD  283 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSD  283 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEe
Confidence            4679999999999999999999999999999996544

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.00  E-value=0.013  Score=48.00  Aligned_cols=40  Identities=30%  Similarity=0.339  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+.+|++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            4688999999985 789999999999999999999997654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.97  E-value=0.0087  Score=51.45  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=42.2

Q ss_pred             ccCCCEEEEEcCChHHH-HHHHHHccC-CCEEE-EEcCCCCCC---------CcccChhhhcc--cCcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASH---------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~-~vA~~l~af-G~~V~-~~~r~~~~~---------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .....+|||||+|.||+ ..++.++.. +++|. .+|+++...         ....++++++.  ..|+|.+.
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~   96 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVP   96 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEEC
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEC
Confidence            34456999999999999 788888766 88876 557764321         12468889986  47888776

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.96  E-value=0.033  Score=46.33  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=43.7

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-----------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~  208 (226)
                      +++|.|.| .|-||+.+++.|..-|.+|++.+|+....           .....+++++...|+|+.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEc
Confidence            47899999 79999999999999999999999983321           0134466788888888765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.95  E-value=0.02  Score=51.48  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|||+|.+|..+|..|...|.+|++||++.
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999999999999999999999999964

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.93  E-value=0.017  Score=51.46  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.5

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~  183 (226)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|++++
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavs  269 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMS  269 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            457999999999999999999999999999998544

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.92  E-value=0.045  Score=46.98  Aligned_cols=60  Identities=18%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCC-CEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG-~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+.+++|.|.|- |.||+.+++.|..-| .+|++++|+....                 .+...+++++...|+|+..
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~  106 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHL  106 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEEC
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEEC
Confidence            3578999999995 999999999999999 9999999875431                 0123355677778877655

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.91  E-value=0.022  Score=46.95  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.1

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            457899999999986 679999999999999999999987654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=94.90  E-value=0.016  Score=48.98  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=39.9

Q ss_pred             EEEEEcCChHHHHH-HHHHccCCCEEE-EEcCCCCCC--------C--cccChhhhcc--cCcEEEEe
Q 027226          155 TVFILGFGNIGVEL-AKRLRPFGVKII-ATKRSWASH--------S--QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~v-A~~l~afG~~V~-~~~r~~~~~--------~--~~~~l~ell~--~sD~v~l~  208 (226)
                      +|||||+|.+|+.. ++.++.-|++|+ .+|+++...        .  .+.++++++.  ..|+|.+.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~   69 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVS   69 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEEC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEe
Confidence            79999999999997 766655788876 567764221        1  2567888886  48888877

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.89  E-value=0.041  Score=46.24  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHc-cCCCEEEEE-cCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIAT-KRSWASH----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~-afG~~V~~~-~r~~~~~----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+| +|++|+.+++.+. .=++++.+. +++..+.                .-..++++++..+|+++-.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4899999 9999999999876 558886654 7654221                1135788888888888755

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.88  E-value=0.035  Score=47.04  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+++|.|.|. |.||+.+++.|..-|.+|++++|+..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            467899999997 99999999999988999999998653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.88  E-value=0.0085  Score=53.49  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +-++|+|||+|-+|.-+|..+...|.+|+++|...
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            45799999999999999999999999999999864

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=94.85  E-value=0.038  Score=49.29  Aligned_cols=36  Identities=42%  Similarity=0.687  Sum_probs=32.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~  183 (226)
                      +.++.|+||.|.|+|++|+.+|++|...|++|++++
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavs  260 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLS  260 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            467999999999999999999999999999999743

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=94.84  E-value=0.027  Score=46.79  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=32.2

Q ss_pred             hcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          129 RKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       129 R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |+++......+...+.......+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A            4 HHHHSSGVDLGTENLYFQSMMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             -----------------------CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCccccccccchhhhhhhcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            344443333333333333345788999999985 6899999999999999999999864

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.84  E-value=0.032  Score=46.28  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             CCCCCCCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          142 KLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       142 ~w~~~~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.......+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~   50 (291)
T 3rd5_A            5 GWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDT   50 (291)
T ss_dssp             CCCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            46655567899999999985 7899999999999999999999974

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.84  E-value=0.036  Score=46.08  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=38.3

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC------C-CcccChhhhccc--CcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS------H-SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~------~-~~~~~l~ell~~--sD~v~l~  208 (226)
                      +++|.|.|- |.||+++++.|..-|.+|++.+|+...      + .+...+++++..  .|+|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEEC
Confidence            689999997 999999999999999999999986543      1 234456666764  6776655

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.83  E-value=0.056  Score=48.74  Aligned_cols=57  Identities=23%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC----Cc-ccChhhhcccCcEEEEec
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH----SQ-VSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~~-~~~l~ell~~sD~v~l~~  209 (226)
                      +++|.|.| .|-||+.+++.|..-|.+|++++|+....    .+ .+.+.+.+...|+|+.+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A  209 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLA  209 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECC
Confidence            68999999 79999999999999999999999986543    11 234566778888887653

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.81  E-value=0.033  Score=46.90  Aligned_cols=39  Identities=31%  Similarity=0.338  Sum_probs=31.7

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.+++|.|.| .|.||+++++.|..-|.+|++++|+.
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4567889999998 79999999999999999999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.79  E-value=0.032  Score=47.04  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|+|.|.||..+|..|. -|.+|..++|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            58999999999999999999 899999999975

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.79  E-value=0.025  Score=48.45  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=42.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-------------------Cc-ccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-------------------SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-------------------~~-~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|+|.|.+|..+|..|..-|. +|..||+.....                   .. ..++++.++.+|++++.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEc
Confidence            589999999999999999987777 899999975321                   00 14556677888888877

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.78  E-value=0.017  Score=45.09  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.| .|.||+.+++.++..|++|++.+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            579999999 79999999999999999999998864

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=94.77  E-value=0.043  Score=48.88  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC---EEEEEc----CC----CCCC--------------C----cccChhhh
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV---KIIATK----RS----WASH--------------S----QVSCQSSG  198 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~---~V~~~~----r~----~~~~--------------~----~~~~l~el  198 (226)
                      +..+.++++.|+|.|..|+++++.|...|+   +|+.++    |+    ....              .    ...+|.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            457889999999999999999999999998   799999    76    2111              0    12356777


Q ss_pred             cccCcEEEEeccC
Q 027226          199 WHCKQVISIFNEK  211 (226)
Q Consensus       199 l~~sD~v~l~~~~  211 (226)
                      +..+|+++-....
T Consensus       261 l~~aDVlInaT~~  273 (439)
T 2dvm_A          261 LKDADVLISFTRP  273 (439)
T ss_dssp             HTTCSEEEECSCC
T ss_pred             hccCCEEEEcCCC
Confidence            8888888877555

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.77  E-value=0.015  Score=49.56  Aligned_cols=36  Identities=33%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  200 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPY  200 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            78999999999999999999999999 9999998643

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=94.76  E-value=0.032  Score=49.83  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.++|++|.|+|.|.+|.+.++.|...|++|+.+++...
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~   46 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC
Confidence            468899999999999999999999999999999998643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.76  E-value=0.022  Score=49.24  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++...
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~  230 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK  230 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4789999999999999999999999999999987543

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=94.75  E-value=0.29  Score=41.44  Aligned_cols=59  Identities=14%  Similarity=0.033  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=|  ++....+..+.-||++|....|..-..   .                ...++++.++.+|+|...
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            5889999999986  999999999999999999998853211   0                145678899999999885

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.74  E-value=0.038  Score=47.32  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |||+|+|-|..|..++..++.+|.+|+.+|+.+..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            79999999999999999999999999999987654

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.73  E-value=0.035  Score=47.39  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      ++|+|+|.|.+|..+|..+..-|. +|..||+...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            699999999999999999988788 9999999753

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.73  E-value=0.024  Score=48.35  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccC-CC-EEEEEcCCCCC-----------C--------CcccChhhhcccCcEEE
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GV-KIIATKRSWAS-----------H--------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~af-G~-~V~~~~r~~~~-----------~--------~~~~~l~ell~~sD~v~  206 (226)
                      ..+.+++|.|.| .|.||+++++.|... |. +|++++|+...           .        .+...+++++...|+|+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi   96 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI   96 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence            457899999999 699999999999988 98 99999996421           1        12344667777888776


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      ..
T Consensus        97 h~   98 (344)
T 2gn4_A           97 HA   98 (344)
T ss_dssp             EC
T ss_pred             EC
Confidence            65

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=94.71  E-value=0.034  Score=47.84  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHc-c-CCCEEE-EEcCCCCCC-----------CcccChhhhccc--CcEEEEe
Q 027226          152 LGKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASH-----------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~-a-fG~~V~-~~~r~~~~~-----------~~~~~l~ell~~--sD~v~l~  208 (226)
                      ...+|||||+|.||+..++.+. . -|++|. .+|+++...           ..+.++++++..  .|++.+.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~   94 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIIT   94 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEEC
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEc
Confidence            3468999999999999999887 4 478877 477765431           125678898874  7887776

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=94.70  E-value=0.036  Score=46.51  Aligned_cols=56  Identities=14%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEE-EEcCCCC-CC-C---cccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWA-SH-S---QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~-~~~r~~~-~~-~---~~~~l~ell~--~sD~v~l~  208 (226)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+++... .. .   -+.+++++..  ..|++++.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~   71 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIY   71 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEe
Confidence            468999999 9999999999988899854 6777532 11 1   2567888887  89999887

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=94.67  E-value=0.01  Score=50.07  Aligned_cols=55  Identities=13%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCC-------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASH-------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~-------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.+|+..++.+... ++++. .+|+++...       ..+.++++++.  ..|++.+.
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~   76 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIA   76 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEe
Confidence            5899999999999999999865 67754 677764321       12457888885  78888887

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.64  E-value=0.013  Score=49.07  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+|||.|.+|..+|..|..-|.+|..|+|+.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999998889999999974

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.63  E-value=0.027  Score=45.89  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             CCccCCCEEEEEcC-C-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- | .||+++|+.|..-|++|+..+|+.
T Consensus        17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            35689999999998 8 599999999999999999999864

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.61  E-value=0.032  Score=46.17  Aligned_cols=56  Identities=20%  Similarity=0.159  Sum_probs=44.1

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCC-CEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG-~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .++|.|.|- |.||+++++.|..-| .+|++.+|++...                 .+..++++++...|++...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   79 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV   79 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence            589999997 999999999998888 9999999976531                 1234466777888887765

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.61  E-value=0.023  Score=46.26  Aligned_cols=55  Identities=9%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|.|.|- |.||+++++.|..-|.+|++.+|+....            .+...+++++...|+|+..
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            68999997 9999999999999999999999976431            1233466777888887765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.61  E-value=0.031  Score=47.30  Aligned_cols=35  Identities=26%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...++|+|||.|.+|..+|..|..-|.+|..| +++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            44579999999999999999999889999999 553

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.59  E-value=0.025  Score=47.90  Aligned_cols=58  Identities=14%  Similarity=-0.012  Sum_probs=43.6

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC----------------------CcccChhhhcc--cCcEE
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH----------------------SQVSCQSSGWH--CKQVI  205 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------------~~~~~l~ell~--~sD~v  205 (226)
                      ...++|.|.|. |.||+.+++.|..-|.+|++.+|+....                      .+..++.+++.  ..|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            44679999997 9999999999998899999999976211                      12345667777  88887


Q ss_pred             EEe
Q 027226          206 SIF  208 (226)
Q Consensus       206 ~l~  208 (226)
                      ...
T Consensus        88 i~~   90 (346)
T 3i6i_A           88 VST   90 (346)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            655

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.55  E-value=0.029  Score=48.13  Aligned_cols=36  Identities=25%  Similarity=0.261  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~  215 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK  215 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            579999999999999999999999999999998754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.51  E-value=0.033  Score=47.39  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~  199 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE  199 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999999999999999999999999998643

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=94.51  E-value=0.021  Score=49.31  Aligned_cols=55  Identities=15%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEE-EEcCCCCCC-------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASH-------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~-~~~r~~~~~-------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+. .++.++.. +++|. .+|+++...       ..+.++++++.  ..|+|.+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   74 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIA   74 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEe
Confidence            58999999999997 77777766 78876 456654221       13578899998  67887776

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=94.48  E-value=0.022  Score=48.34  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=40.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC---CEEEE-EcCCCCCC----------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG---VKIIA-TKRSWASH----------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG---~~V~~-~~r~~~~~----------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .++||||+|.||+..++.++..+   ++|.+ +|+++...          ..+.++++++.  ..|+|.+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~   73 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVG   73 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEEC
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEC
Confidence            48999999999999999998664   56555 57654321          13678899987  57888776

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.43  E-value=0.023  Score=50.41  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++.+|+|.|||.|..|.+.|+.|+..|.+|+++|.+...
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            367899999999999999999999999999999986543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.42  E-value=0.034  Score=50.17  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCChHHHH-HHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..|+|.|||.|.+|.. +|+.|+..|++|.++|....
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            3589999999999996 89999999999999998643

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.41  E-value=0.045  Score=45.86  Aligned_cols=37  Identities=32%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.+++|.|.|- |.||+++++.|..-|.+|++.+|+..
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            35789999997 99999999999989999999999754

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=94.41  E-value=0.036  Score=47.19  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             cCCCEEEEEcCChHHH-HHHHHHccC-CCEEEE-EcCCCCCC--CcccChhhhccc---CcEEEEe
Q 027226          151 LLGKTVFILGFGNIGV-ELAKRLRPF-GVKIIA-TKRSWASH--SQVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~-~vA~~l~af-G~~V~~-~~r~~~~~--~~~~~l~ell~~---sD~v~l~  208 (226)
                      .+..+|||||+|.||+ ..++.++.. +++|.+ +|++....  ..+.++++++..   .|+|.+.
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~   88 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLC   88 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEEC
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEe
Confidence            3456999999999999 688888765 788665 56654432  236788999876   7777766

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.40  E-value=0.058  Score=46.33  Aligned_cols=58  Identities=19%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..+++|.|.|- |.||+.+++.|..-|.+|++++|+....               .+...+++++...|+|+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~  100 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNL  100 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence            36789999997 9999999999998899999999975432               1123356677788877655

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.38  E-value=0.039  Score=47.18  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  203 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR  203 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            478999999999999999999999999999987643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.38  E-value=0.033  Score=48.07  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  232 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK  232 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999999999999 89999886543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=94.37  E-value=0.034  Score=45.94  Aligned_cols=40  Identities=20%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..|+||++.|-|-+ .||+++|++|..-|++|+..+|+..+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE   47 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh
Confidence            36899999999865 69999999999999999999997544

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.37  E-value=0.047  Score=46.85  Aligned_cols=54  Identities=9%  Similarity=-0.013  Sum_probs=37.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccC---------CCEEEEE-cCCCCCC--C----cccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF---------GVKIIAT-KRSWASH--S----QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af---------G~~V~~~-~r~~~~~--~----~~~~l~ell~~sD~v~l~  208 (226)
                      -+|||+|+|.||+.+++.++..         +++|.++ +++....  .    -..++++++ ..|+|+..
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~   73 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEA   73 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEEC
Confidence            3799999999999999988654         5676554 4543322  1    134677777 78888776

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=94.36  E-value=0.041  Score=43.71  Aligned_cols=64  Identities=19%  Similarity=0.116  Sum_probs=43.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhccc-CcEEEEeccCCc
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHC-KQVISIFNEKGF  213 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~-sD~v~l~~~~d~  213 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+..+|+..-+ .+..++++++.. ..+..+.+.+.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            467899999986 7899999999999999999999976533 233445555442 134444444443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.35  E-value=0.076  Score=45.14  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHcc--CCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRP--FGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~a--fG~~V~~~~r~~~  187 (226)
                      ..+.+++|.|.| .|-||+++++.|..  -|.+|++.+|+..
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            367899999995 69999999999998  8999999998654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.34  E-value=0.034  Score=47.95  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  229 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK  229 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            57899999999999999999999999 89999886543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=94.34  E-value=0.021  Score=48.52  Aligned_cols=55  Identities=22%  Similarity=0.219  Sum_probs=40.8

Q ss_pred             CEEEEEcCChHHHHHHHHHc-c-CCCEEE-EEcCCCCCC--------C--cccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASH--------S--QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~-a-fG~~V~-~~~r~~~~~--------~--~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++ . -|++|+ .+|+++...        .  .+.++++++.  ..|+|.+.
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~   78 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIV   78 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEEC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEe
Confidence            58999999999999999887 4 478865 567764321        1  2457888886  68888877

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.33  E-value=0.034  Score=47.92  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++...
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  228 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK  228 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999999999999 89999886543

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=94.32  E-value=0.028  Score=48.37  Aligned_cols=55  Identities=16%  Similarity=0.015  Sum_probs=40.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEEE-EcCCCCCC-------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASH-------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~~-~~r~~~~~-------~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+. .++.++.. +++|.+ +|+++...       ..+.++++++..  .|+|.+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~   72 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVN   72 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEe
Confidence            58999999999997 67777655 788764 56664321       125678999977  7777776

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.31  E-value=0.041  Score=48.88  Aligned_cols=58  Identities=16%  Similarity=0.011  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCC----------hHHHHHHHHHccCCCEEEEEcCCCCCC--C---cccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASH--S---QVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~--~---~~~~l~ell~~sD~v~l~~  209 (226)
                      .+++|+|+|+-          +=...++++|+..|++|.+|||.....  .   -..++++++..+|++++..
T Consensus       331 ~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~~~  403 (432)
T 3pid_A          331 KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIISNR  403 (432)
T ss_dssp             CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEECSS
T ss_pred             cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEECC
Confidence            48999999984          346899999999999999999987654  1   1468999999999999883

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.31  E-value=0.097  Score=43.41  Aligned_cols=57  Identities=19%  Similarity=0.061  Sum_probs=42.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcC-CCCC-----------C------------CcccChhhhcccCcEEEE
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKR-SWAS-----------H------------SQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r-~~~~-----------~------------~~~~~l~ell~~sD~v~l  207 (226)
                      ||+|.|.| .|-||+++++.|..-|.+|++..| ++..           .            .+...+++++...|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            68999999 699999999999999999999887 4311           0            123345667777887766


Q ss_pred             ec
Q 027226          208 FN  209 (226)
Q Consensus       208 ~~  209 (226)
                      ..
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.30  E-value=0.038  Score=47.49  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            589999999999999999999999999999998643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.28  E-value=0.038  Score=46.92  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.|++|.|.|.|.||...++.++.+|++|++.+++..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  201 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA  201 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3578999999999999999999999999999988643

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.28  E-value=0.042  Score=47.08  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  207 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT  207 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            47899999999999999999999999 9999988643

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.27  E-value=0.034  Score=45.55  Aligned_cols=56  Identities=16%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccC--CCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEec
Q 027226          154 KTVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~af--G~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ++|.|.|- |.||+.+++.|..-  |.+|++.+|+....               .+..++++++...|++....
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            46888886 99999999999988  99999999975431               12344667788888877553

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.27  E-value=0.054  Score=44.46  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997   69999999999999999999998764

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=94.27  E-value=0.032  Score=47.77  Aligned_cols=55  Identities=18%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEE-EEcCCCCC---C----CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWAS---H----SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~-~~~r~~~~---~----~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+. .++.++.. +++|. .+|+++..   .    ..+.++++++..  .|+|.+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~   74 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIP   74 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEe
Confidence            58999999999997 78877766 78876 45665321   1    235788999976  7777776

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.26  E-value=0.03  Score=48.26  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=25.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEc
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATK  183 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~  183 (226)
                      .+|||+|+|+||+.+++.+... +++|.++.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            4799999999999999998755 68877764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.25  E-value=0.065  Score=44.97  Aligned_cols=37  Identities=35%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.+++|.|.| .|-||+.+++.|..-|.+|++..|+..
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~   40 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPT   40 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4679999999 899999999999999999998887643

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=94.25  E-value=0.038  Score=47.18  Aligned_cols=55  Identities=11%  Similarity=0.056  Sum_probs=38.3

Q ss_pred             CEEEEEcCChHHHH-HHH-HHc-cCCCEEE-EEcCCCCCC---------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAK-RLR-PFGVKII-ATKRSWASH---------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~-~l~-afG~~V~-~~~r~~~~~---------~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+. .++ .++ .-+++|. .+|+++...         ..+.++++++..  .|+|.+.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   72 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVC   72 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEEC
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEc
Confidence            47999999999996 555 434 4478877 677765432         125678999987  5666655

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=94.22  E-value=0.046  Score=47.07  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~  185 (226)
                      .+|||.|||+|||.+.|.+..- .++|.+.+-.
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~   35 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDL   35 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4799999999999999998755 7899887653

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=94.22  E-value=0.031  Score=47.97  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=25.9

Q ss_pred             EEEEEcCChHHHHHHHHHccC----CCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPF----GVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af----G~~V~~~~r  184 (226)
                      +|||.|||+|||.+.|.+..-    .++|.+.+-
T Consensus         3 kVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd   36 (335)
T 1obf_O            3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence            799999999999999988654    689888766

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.21  E-value=0.041  Score=46.59  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ..+|+|||.|.+|..+|..+..-|. +|..||+..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3689999999999999999987787 999999975

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.21  E-value=0.036  Score=47.69  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=26.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.++|.+... +++|.+..-
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            3899999999999999998755 688877753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=94.21  E-value=0.055  Score=46.55  Aligned_cols=62  Identities=24%  Similarity=0.364  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ...||.++-+=|-+.|-          .-|.......|++++|.|+|.|.+|.++|+.|...|. ++..+|+.
T Consensus         5 ~~~~~~~~~lnl~lm~w----------Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A            5 LKIADQSVDLNLKLMKW----------RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHH----------hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            45677766655544431          2233333467999999999999999999999999998 68888874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=94.19  E-value=0.093  Score=43.49  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ...+|+|.|||-|.||-++|..|+.+|.+|..+.|....
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            456799999999999999999999999999999886543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.19  E-value=0.049  Score=46.41  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~  205 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG  205 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence            4799999999 89999999999999999999998644

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=94.19  E-value=0.03  Score=47.76  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=41.4

Q ss_pred             CEEEEEcCChHHHHHHHHHc-c-CCCEEE-EEcCCCCCC-----------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASH-----------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~-a-fG~~V~-~~~r~~~~~-----------~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++ . -++++. .+|+++...           ..+.++++++..  .|+|.+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~   73 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVT   73 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEC
Confidence            47999999999999999887 5 478877 467754321           125678899876  7888776

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.17  E-value=0.055  Score=46.08  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .+|+|+|.|.+|..+|..+..-|. +|..+|....
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            589999999999999999987787 8999998753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.15  E-value=0.033  Score=47.52  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  203 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF  203 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            78999999999999999999999999 9999998643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.13  E-value=0.032  Score=48.06  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  228 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK  228 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHH
Confidence            57899999999999999999999999 89999876543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.11  E-value=0.042  Score=44.99  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEc---CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG---~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|   -|.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            57899999999   59999999999999999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.11  E-value=0.032  Score=50.16  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=29.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~  186 (226)
                      .+|+|||+|.+|..+|..|...  |.+|++||++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4899999999999999999866  79999999864

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=94.10  E-value=0.32  Score=41.06  Aligned_cols=59  Identities=14%  Similarity=-0.022  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC---------C-cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH---------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~-~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|= +++....+..+.-||++|....|..-..         + -..++++.++.+|+|...
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~  220 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTD  220 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEec
Confidence            588999999997 8999999999999999999998853221         1 146688999999999885

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.10  E-value=0.071  Score=43.70  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHccC-CCEEEEEcCCCCCCCcccChhhhcc-cCcEEEEe
Q 027226          155 TVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSGWH-CKQVISIF  208 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~af-G~~V~~~~r~~~~~~~~~~l~ell~-~sD~v~l~  208 (226)
                      +|+|+|. |++|+.+++.+..- |+++.+.-...      .++++++. .+|+++=+
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------~dl~~~~~~~~DvvIDf   52 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------DPLSLLTDGNTEVVIDF   52 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------CCTHHHHHTTCCEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------CCHHHHhccCCcEEEEc
Confidence            6999995 99999999998755 89987654332      25666664 67877744

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=94.09  E-value=0.044  Score=44.54  Aligned_cols=42  Identities=21%  Similarity=0.183  Sum_probs=35.6

Q ss_pred             CCCCCccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          145 VPTGETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       145 ~~~~~~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ......+.+|++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A            6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            33567899999999996   5899999999999999999998873

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.09  E-value=0.047  Score=45.55  Aligned_cols=55  Identities=18%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++|.|.| .|.||+++++.|..-|.+|++.+|+....                   .+..++.+++...|+|...
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~   86 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISA   86 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            6899999 59999999999998899999999976411                   1233466777888887654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.08  E-value=0.027  Score=47.02  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|++|.|+|. |.||+.+++.++.+|++|++.+++...
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~  162 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK  162 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4789999998 999999999999999999999986543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.08  E-value=0.056  Score=43.25  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|.+|+..+|+.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999987 8999999999999999999999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.08  E-value=0.033  Score=47.91  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~  227 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK  227 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            57899999999999999999999999 89999886543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.08  E-value=0.035  Score=49.80  Aligned_cols=62  Identities=19%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             CCCccCCCEEEEEcCChHHHHHHHHHccC-CCEEEEEcCCCCCC--------C-----c---ccChhhhcccCcEEEEe
Q 027226          147 TGETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASH--------S-----Q---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~~~--------~-----~---~~~l~ell~~sD~v~l~  208 (226)
                      ....+.+++|+|+|.|.+|+.+++.|... |.+|..++|+....        .     +   ..++.+++..+|+|+..
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            34678889999999999999999999877 78999999964321        0     1   12455667788887776

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.07  E-value=0.048  Score=45.79  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.|.+|.|+|.|.||...++.++.+|++|++.+ +..
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~  176 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL  176 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh
Confidence            358999999999999999999999999999998 544

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.05  E-value=0.035  Score=52.56  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            689999999999999999999999999999974

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.04  E-value=0.043  Score=45.34  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=30.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +++|.|.|- |.||+++++.|..-|.+|++.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999995 9999999999998899999999975

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.04  E-value=0.11  Score=42.77  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ...+++|.|||-|.||-++|..|+.+|.+|+.+.|....
T Consensus       149 ~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          149 IFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            356899999999999999999999999999999876544

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=94.03  E-value=0.12  Score=43.26  Aligned_cols=34  Identities=29%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +++|.|.| .|-||+.+++.|..-|.+|++..|+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~   43 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDP   43 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCc
Confidence            78999999 79999999999999999999877754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.03  E-value=0.068  Score=45.62  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      ....+|+|+|.|.+|..+|..+..-|. +|..+|+...
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            456799999999999999999986666 9999998754

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.02  E-value=0.12  Score=42.63  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.0

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++|.|.|- |-||+++++.|..-|.+|++.+|....
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   36 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSG   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            47899987 999999999999999999999986543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.01  E-value=0.04  Score=45.94  Aligned_cols=56  Identities=14%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC-C---------------CC--------CcccChhhhcccCcEEEE
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW-A---------------SH--------SQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~-~---------------~~--------~~~~~l~ell~~sD~v~l  207 (226)
                      .++|.|.| .|.||+++++.|..-|.+|++.+|+. .               ..        .+..++.+++...|+|..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            46899999 59999999999998899999999976 1               01        123446677888887765


Q ss_pred             e
Q 027226          208 F  208 (226)
Q Consensus       208 ~  208 (226)
                      .
T Consensus        84 ~   84 (321)
T 3c1o_A           84 A   84 (321)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.97  E-value=0.066  Score=45.64  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      ...+|+|+|.|.+|..+|..+..-|+ +|..+|+...
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            45799999999999999999875555 9999998754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=93.95  E-value=0.061  Score=42.95  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++++.|..-|.+|+..+|+.
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999987 8999999999999999999999864

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=93.95  E-value=0.099  Score=44.27  Aligned_cols=55  Identities=7%  Similarity=0.081  Sum_probs=40.6

Q ss_pred             CEEEEEcCChHHH-HHHHHHccCCCEE-EEEcCCCCCC----------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGV-ELAKRLRPFGVKI-IATKRSWASH----------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~-~vA~~l~afG~~V-~~~~r~~~~~----------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|++|. ..++.++.-|++| -.+|+++...          ..+.++++++.  ..|+|.+.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~   73 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACA   73 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEEC
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEe
Confidence            5899999999996 6777776568996 4677775442          12567889987  57887776

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=93.94  E-value=0.037  Score=45.46  Aligned_cols=54  Identities=7%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             EEEEEc-CChHHHHHHHHHccC-CCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|.| .|.||+.+++.|..- |.+|++.+|++...               .+..++++++...|++...
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            588998 699999999999887 99999999975431               1234567788888988765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=93.94  E-value=0.079  Score=43.75  Aligned_cols=59  Identities=19%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC-CcccCh-hhhcccCcEEEEeccCCc
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQ-SSGWHCKQVISIFNEKGF  213 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l-~ell~~sD~v~l~~~~d~  213 (226)
                      +|.|.|- |-||+.+++.|..-|.+|++.+|++... ...+.+ .+.+...|.+.-+.-..+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccCcc
Confidence            5888886 9999999999999999999999986654 111222 345677888776554433

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=93.90  E-value=0.057  Score=44.36  Aligned_cols=39  Identities=21%  Similarity=0.386  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+|.||++.|-|-+ .||+++|++|..-|++|+..+|+..
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~   44 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP   44 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence            47999999998765 7999999999999999999998753

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=93.88  E-value=0.072  Score=43.08  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=34.2

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3688999999986 7899999999999999999999864

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=93.87  E-value=0.35  Score=41.46  Aligned_cols=59  Identities=12%  Similarity=-0.026  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=|  +++...+..+.-|||+|....|..-..   .                -..++++.++.+|+|...
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            6899999999996  999999999999999999998843211   0                145678899999999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.86  E-value=0.052  Score=45.89  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|++|.|.|. |.||+.+++.++..|++|++.+++.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~  180 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD  180 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35899999998 9999999999999999999998863

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.84  E-value=0.065  Score=43.39  Aligned_cols=39  Identities=23%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            46899999999986 7999999999999999999999864

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.84  E-value=0.064  Score=43.74  Aligned_cols=54  Identities=19%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHccC--CCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~af--G~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|.|. |.||+++++.|..-  |.+|++.+|++...               .+..++++++...|++...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            4778886 99999999999987  99999999975432               1234466778888887755

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=93.82  E-value=0.041  Score=48.08  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=25.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccC---CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF---GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af---G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.++|.|..-   +++|.+.+-
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            3799999999999999998653   488877643

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.80  E-value=0.14  Score=43.04  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+++|.|.|. |.||+.+++.|..-|.+|++.+|..
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4578899999997 9999999999998899999999864

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=93.80  E-value=0.049  Score=46.79  Aligned_cols=55  Identities=16%  Similarity=0.071  Sum_probs=40.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEEE-EcCCCCCC-------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASH-------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~~-~~r~~~~~-------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+. .++.++.. +++|.+ +|+++...       ..+.++++++.  ..|+|.+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~   72 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVT   72 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEEC
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEc
Confidence            58999999999997 68878766 788765 56653221       13578899997  56777776

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.76  E-value=0.086  Score=42.70  Aligned_cols=39  Identities=23%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999986 6899999999999999999999874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.76  E-value=0.073  Score=43.11  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             CCCCCCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          143 LGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      |.......-.+|++.|.|- |.||+++|+.|..-|++|+..+|+....
T Consensus        12 ~~~~~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~   59 (251)
T 3orf_A           12 SGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN   59 (251)
T ss_dssp             ----------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             ccccccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4443334555899999985 6899999999999999999999986543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=93.76  E-value=0.046  Score=48.40  Aligned_cols=56  Identities=11%  Similarity=0.023  Sum_probs=41.2

Q ss_pred             CCEEEEEcCChHHH-HHHHHHccC-CCEEE-EEcCCCCCC--------C------cccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASH--------S------QVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~-~vA~~l~af-G~~V~-~~~r~~~~~--------~------~~~~l~ell~--~sD~v~l~  208 (226)
                      -.+|||||+|.||+ ..++.++.. +++|. .+|++....        .      .+.++++++.  ..|+|.+.
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~ia  157 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYII  157 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEEC
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEc
Confidence            35899999999997 899988765 67764 567754221        1      2567889987  67888876

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=93.73  E-value=0.057  Score=46.72  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=26.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.+.|.|..- +++|.+..-
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaind   49 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIND   49 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecC
Confidence            4899999999999999998755 788877763

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.72  E-value=0.027  Score=48.54  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=36.8

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |.......|.+++|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus        26 ~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d   69 (346)
T 1y8q_A           26 WGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE   69 (346)
T ss_dssp             HCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            54444568999999999999999999999998898 78888764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=93.72  E-value=0.08  Score=43.44  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=35.6

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   47 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETD   47 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4688999999986 789999999999999999999997543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.72  E-value=0.046  Score=46.29  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|++|.|.|. |.||..+++.++.+|++|++.+++.
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  184 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA  184 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35899999999 9999999999999999999999864

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=93.70  E-value=0.078  Score=43.00  Aligned_cols=39  Identities=13%  Similarity=0.274  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   43 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPA   43 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            578999999986 799999999999999999999997643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.70  E-value=0.072  Score=44.38  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=35.5

Q ss_pred             CCccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|-+   .||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            457899999999986   899999999999999999999874

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.69  E-value=0.072  Score=44.11  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC---------------C--------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS---------------H--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~---------------~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .++|.|.| .|.||+.+++.|..-|.+|++.+|+...               .        .+..++.+++...|+|...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            46899999 5999999999999889999999997421               1        1234466778888887765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.68  E-value=0.054  Score=46.07  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccC--CCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+  |++|++.+++..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~  207 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK  207 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            689999999999999999999999  999999998643

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=93.68  E-value=0.12  Score=46.84  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCChHHHH-HHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~-vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+++|-+||.|.+|.. +|+.|+..|++|.++|....+
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~   55 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYP   55 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCT
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCc
Confidence            45789999999999996 799999999999999986543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.66  E-value=0.065  Score=44.33  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+++|.|.|- |.||+.+++.|..-|.+|++.+|+..
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            356899999998 99999999999999999999999765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.66  E-value=0.038  Score=47.07  Aligned_cols=38  Identities=34%  Similarity=0.507  Sum_probs=34.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.|++|.|.|. |.||..+++.++.+|++|++.+++...
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            35899999998 999999999999999999999986543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.63  E-value=0.045  Score=46.54  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             cCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.|++|.|+|.| .||..+++.++.+|++|++.+++...
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~  181 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKH  181 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            357999999998 99999999999999999999987554

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=93.63  E-value=0.038  Score=47.36  Aligned_cols=29  Identities=34%  Similarity=0.509  Sum_probs=24.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEc
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATK  183 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~  183 (226)
                      +|||+|+|+||+.+.|.|..-+++|.+++
T Consensus         2 kVgInG~G~IGr~vlr~l~~~~~evvain   30 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSRGVEVALIN   30 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCEEEEEe
Confidence            79999999999999998764488888643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.62  E-value=0.068  Score=44.12  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=42.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC----------------C--------CcccChhhhcccCcEEEE
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS----------------H--------SQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~----------------~--------~~~~~l~ell~~sD~v~l  207 (226)
                      .++|.|.|- |.||+++++.|..-|.+|++.+|+...                .        .+..++.+++...|+|..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999995 999999999999899999999997421                1        123346667778887765


Q ss_pred             e
Q 027226          208 F  208 (226)
Q Consensus       208 ~  208 (226)
                      .
T Consensus        84 ~   84 (308)
T 1qyc_A           84 T   84 (308)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.62  E-value=0.053  Score=47.22  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  221 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPE  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence            57899999999999999999999999 9999998643

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.61  E-value=0.091  Score=43.99  Aligned_cols=55  Identities=15%  Similarity=0.154  Sum_probs=42.6

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|.|.| .|.||+++++.|..-|.+|++.+|+....               .+...+++++...|+|+..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4899999 59999999999999999999999975431               1223456677788877655

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=93.59  E-value=0.065  Score=43.42  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            67899999986 89999999999999999999998753

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.58  E-value=0.056  Score=44.37  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=34.3

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45789999999986 679999999999999999999997544

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=93.58  E-value=0.094  Score=48.48  Aligned_cols=64  Identities=23%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ....||.++-+-|-+.|-          .-|.......|++++|.|||.|.+|..+|+.|...|. ++..+|...
T Consensus       296 p~~la~~~~~Lnlklm~w----------Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          296 PLKIADQSVDLNLKLMKW----------RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHHHHhhhhhhhhHHHHH----------hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            345666666655544431          2333333457999999999999999999999999998 688888853

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.57  E-value=0.039  Score=47.29  Aligned_cols=35  Identities=9%  Similarity=0.045  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      ..++|+|+|.|.+|..+|..+..-|+  +|..+|...
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            56899999999999999999987776  899999853

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.57  E-value=0.088  Score=42.17  Aligned_cols=39  Identities=23%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            45789999999986 7999999999999999999999863

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.55  E-value=0.091  Score=44.32  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=40.8

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEE-EcCCCCCC---------CcccChhhhc----------ccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIA-TKRSWASH---------SQVSCQSSGW----------HCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~-~~r~~~~~---------~~~~~l~ell----------~~sD~v~l~  208 (226)
                      .++||||+ |.||+..++.++..+.++.+ +|+++...         ..+.++++++          +..|+|++.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~   79 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIA   79 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEEC
Confidence            58999999 78999999999988998654 56654431         1245677777          567887776

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.54  E-value=0.075  Score=43.23  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~--IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ++.||++.|.|- |.  ||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            588999999997 45  99999999999999999998864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=93.52  E-value=0.079  Score=42.68  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=34.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4688999999986 7899999999999999999999864

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=93.51  E-value=0.05  Score=46.79  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccC---CCEEEEEc
Q 027226          154 KTVFILGFGNIGVELAKRLRPF---GVKIIATK  183 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af---G~~V~~~~  183 (226)
                      .+|||+|+|+||+.+.|.|..-   +++|.+.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            3899999999999999998654   48887754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.50  E-value=0.033  Score=52.65  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=31.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      =++|||||.|.+|..+|..+..-|.+|+.||+++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999998899999999974

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.50  E-value=0.047  Score=47.15  Aligned_cols=38  Identities=26%  Similarity=0.461  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++...
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~  230 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKK  230 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            358899999999999999999999999 89999987543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=93.49  E-value=0.076  Score=44.96  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.+++|.|.| .|.||+.+++.|..-|.+|++++|+..
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   44 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   44 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            35689999999 699999999999999999999999754

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.48  E-value=0.069  Score=46.50  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEEEEc
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~  183 (226)
                      .+|+|||.|.+|..+|..|.. -|.+|..|+
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            379999999999999999976 499999999

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.48  E-value=0.1  Score=42.78  Aligned_cols=53  Identities=21%  Similarity=0.185  Sum_probs=40.7

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhccc--CcEEEEe
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~--sD~v~l~  208 (226)
                      +|.|.|- |.||+.+++.|. -|.+|++.+|+....    .+...+++++..  .|++...
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~   61 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNA   61 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEEC
Confidence            6889986 999999999999 799999999975321    234456677775  7877655

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=93.48  E-value=0.068  Score=46.80  Aligned_cols=35  Identities=9%  Similarity=0.154  Sum_probs=32.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      --++-|+|.|++|+++++.++.+|++|+.+|+++.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            35999999999999999999999999999998654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.47  E-value=0.071  Score=46.30  Aligned_cols=36  Identities=31%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~  221 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA  221 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence            57899999999999999999999999 7999988643

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=93.47  E-value=0.038  Score=47.42  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=40.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEE-EEcCCCCCC-------------CcccChhhhcc--cCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASH-------------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~~-------------~~~~~l~ell~--~sD~v~l~  208 (226)
                      .+|||||+|.||+..++.++.. ++++. .+|+++...             ..+.++++++.  ..|+|.+.
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   78 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVP   78 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEc
Confidence            4899999999999999988765 67765 567754221             11467888886  57888877

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=93.47  E-value=0.45  Score=40.17  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             ccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCCC-CC----CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWA-SH----SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~~-~~----~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=|   ++....+..+.-||++|....|..- +.    -...++++.++.+|+|...
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~  210 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLL  210 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEec
Confidence            5889999999975   6999999999999999999987421 11    1245788999999999886

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.46  E-value=0.074  Score=46.38  Aligned_cols=38  Identities=34%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      --.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  249 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEV  249 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            3458999999999999999999999999 9999987643

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=93.45  E-value=0.085  Score=40.84  Aligned_cols=55  Identities=15%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             CC-EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC----CcccChhhhccc---CcEEEEe
Q 027226          153 GK-TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH----SQVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       153 gk-tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~----~~~~~l~ell~~---sD~v~l~  208 (226)
                      +| ++.|.| .|.||+++++.|. -|++|+..+|+....    .+..++++++..   .|+++..
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEEC
Confidence            55 788887 5899999999999 999999999975321    223445555554   4655543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.45  E-value=0.053  Score=45.09  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .++++.|+|.|..|++++..|...|+ +|..++|+..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~  154 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK  154 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            46899999999999999999999998 7999999854

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=93.45  E-value=0.41  Score=40.81  Aligned_cols=59  Identities=17%  Similarity=0.123  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=|  ++....+..+.-||++|....|..-..   .                ...++++.++.+|+|...
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            5889999999985  999999999999999999998843111   0                145678899999999885

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=93.44  E-value=0.64  Score=39.44  Aligned_cols=59  Identities=15%  Similarity=0.090  Sum_probs=48.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|= +++....+..+.-||++|....|..-..   .                ...++++.++.+|+|...
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~  230 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTD  230 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEc
Confidence            588999999997 8999999999999999999998853211   0                145678899999999885

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=93.43  E-value=0.089  Score=42.65  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999986 8999999999999999999999864

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=93.42  E-value=0.05  Score=46.79  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=25.9

Q ss_pred             CEEEEEcCChHHHHHHHHHcc---C-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRP---F-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a---f-G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.+.|.|..   - +++|.+.+.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            379999999999999999876   3 688877654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.41  E-value=0.055  Score=45.91  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.|. |.||+.+++.++.+|++|++.+++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5799999997 9999999999999999999998863

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=93.40  E-value=0.14  Score=44.10  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=26.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCC-CEEEEEcC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKR  184 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG-~~V~~~~r  184 (226)
                      .+|||+| +|.||+.+++.|.... ++|.++.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~   41 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA   41 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence            5899999 9999999999997654 68877743

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.39  E-value=0.081  Score=43.53  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+||++.|-|-+ .||+++|++|..-|++|+.++|+.
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            47999999999864 699999999999999999999964

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=93.38  E-value=0.11  Score=43.43  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEE-EEcCCCC-CC----CcccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWA-SH----SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~-~~~r~~~-~~----~~~~~l~ell~--~sD~v~l~  208 (226)
                      .++|.|+|. |+.|+.+++.++..|++++ .++|... ..    .-+.+++++..  ..|++++.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~   71 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIF   71 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEe
Confidence            478999999 9999999999998899854 7777641 11    12567888887  88998877

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=93.38  E-value=0.097  Score=42.41  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             CccCCCEEEEEcC-----------------ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGF-----------------GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~-----------------G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..+.||+|.|-|-                 |.||.++|+.|...|++|+.+++.
T Consensus         4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            3589999999998                 789999999999999999998764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=93.38  E-value=0.069  Score=45.81  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.6

Q ss_pred             EEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      +|||+|+|+||+.+.|.|..- .++|.+.+-
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            799999999999999998754 688877654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.35  E-value=0.083  Score=41.20  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +|.|.| .|.||+++++.|..-|.+|++++|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            689999 699999999999999999999999753

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=93.35  E-value=0.099  Score=42.22  Aligned_cols=38  Identities=24%  Similarity=0.402  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   42 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT   42 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchh
Confidence            478999999985 89999999999999999999998753

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=93.34  E-value=0.074  Score=44.26  Aligned_cols=55  Identities=25%  Similarity=0.168  Sum_probs=39.2

Q ss_pred             CEEEEEcC-ChHHHHHHHHHc-cCCCEEE-EEcCCCCC----C------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLR-PFGVKII-ATKRSWAS----H------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~-afG~~V~-~~~r~~~~----~------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+|+|+|+ |++|+.+++.+. .=|+++. ++++....    .            .-..++++++..+|+++-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            48999998 999999999765 5578877 56665422    0            0134577888888888733

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.33  E-value=0.076  Score=42.44  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=32.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +.+|++.|.| .|.||+++|+.|..-|++|+..+|+...
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   39 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            3578999997 5799999999999999999999997654

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=93.33  E-value=0.64  Score=39.15  Aligned_cols=59  Identities=15%  Similarity=0.050  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccC-CCEEEEEcCCCCCC---------C---cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASH---------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~af-G~~V~~~~r~~~~~---------~---~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=   |++....+..+.-| |++|....|..-..         .   ...++++.++.+|+|...
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~  220 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT  220 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeC
Confidence            588999999997   59999999999999 99999998842211         0   135788999999999887

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.33  E-value=0.081  Score=44.43  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      ..+|+|+|.|.+|..+|..|..-|.  +|..++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999988788  999999974

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=93.31  E-value=0.098  Score=44.66  Aligned_cols=55  Identities=9%  Similarity=-0.026  Sum_probs=39.3

Q ss_pred             CEEEEEcCChHHH-HHHHHHccC-CCEEE-EEcCCCCCC----------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASH----------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~-~vA~~l~af-G~~V~-~~~r~~~~~----------~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+ ..+..++.. +++|. .+|++....          ..+.++++++..  .|+|.+.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~   72 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITIC   72 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEEC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEe
Confidence            4899999999999 577777765 78876 566651111          125678999876  6777776

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=93.31  E-value=0.084  Score=43.34  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=35.2

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46799999999986 7899999999999999999999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.30  E-value=0.17  Score=42.63  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      .+|+|+|.|.+|..+|..+...|. +|..+|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            589999999999999999988786 899999864

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=93.29  E-value=0.11  Score=44.04  Aligned_cols=55  Identities=13%  Similarity=0.078  Sum_probs=40.3

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEE-EcCCCCCC---------CcccChhhhc-----------ccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIA-TKRSWASH---------SQVSCQSSGW-----------HCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~-~~r~~~~~---------~~~~~l~ell-----------~~sD~v~l~  208 (226)
                      .++||||+ |.||+..++.++..|.++.+ +|+++...         ..+.++++++           +..|+|.+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~   80 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSIC   80 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEEC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEEC
Confidence            58999999 78999999999988998655 56654331         1245677776           557777776

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=93.28  E-value=0.098  Score=44.82  Aligned_cols=59  Identities=10%  Similarity=0.033  Sum_probs=39.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccC--------CCEEEE-EcCCCCCC--------C--cccChhhhccc--CcEEEEe
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPF--------GVKIIA-TKRSWASH--------S--QVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~af--------G~~V~~-~~r~~~~~--------~--~~~~l~ell~~--sD~v~l~  208 (226)
                      ..+.-+|||||+|.||+.-++.++.+        +++|.+ +|+++...        .  .+.++++++..  .|+|++.
T Consensus        22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia  101 (393)
T 4fb5_A           22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT  101 (393)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred             CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence            34557999999999999877766553        578666 46654432        1  25788999865  4666655

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=93.27  E-value=0.11  Score=42.49  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (264)
T 2dtx_A            4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP   43 (264)
T ss_dssp             GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            357899999997 579999999999999999999998754

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.26  E-value=0.066  Score=45.92  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccC-CCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...++.++.+ |++|++.+++..
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~  222 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE  222 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence            578999999999999999999999 999999998643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.25  E-value=0.13  Score=46.20  Aligned_cols=60  Identities=10%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             CccCCCEEEEEcCC----------hHHHHHHHHHccCCCEEEEEcCCCCCC--Cc-ccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASH--SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~--~~-~~~l~ell~~sD~v~l~  208 (226)
                      ..+.|++|+|+|+-          +=...+++.|...|++|.+|||.....  .. ..++++.+..+|.++++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~  421 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVL  421 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEEC
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEe
Confidence            46899999999973          346899999999999999999987532  11 35778999999999998

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=93.23  E-value=0.077  Score=43.52  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=35.3

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   61 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTRE   61 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            446799999999985 6899999999999999999999864

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.23  E-value=0.07  Score=43.42  Aligned_cols=37  Identities=22%  Similarity=0.487  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999997   6999999999999999999999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.23  E-value=0.087  Score=45.41  Aligned_cols=36  Identities=36%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++..
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  218 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQAT  218 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            47899999999999999999999999 8999987643

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.22  E-value=0.069  Score=44.04  Aligned_cols=39  Identities=38%  Similarity=0.538  Sum_probs=35.0

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.|+++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus        23 ~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~   62 (286)
T 1xu9_A           23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   62 (286)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34689999999987 8999999999999999999999864

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=93.22  E-value=0.068  Score=45.91  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=24.1

Q ss_pred             EEEEEcCChHHHHHHHHHccC---CCEEEEEc
Q 027226          155 TVFILGFGNIGVELAKRLRPF---GVKIIATK  183 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af---G~~V~~~~  183 (226)
                      +|||+|+|+||+.+.|.|..-   .++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999998654   46776654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.21  E-value=0.1  Score=44.62  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcCChHHHHH-HHHH-ccCCCE-EEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVEL-AKRL-RPFGVK-IIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~v-A~~l-~afG~~-V~~~~r~~~  187 (226)
                      ..+++|.|+|.|.||... ++.+ +.+|++ |++.+++..
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~  210 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR  210 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence            445899999999999999 9999 999998 999998765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.18  E-value=0.069  Score=45.92  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~  226 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES  226 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence            57899999999999999999999999 6999987643

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.18  E-value=0.13  Score=43.96  Aligned_cols=42  Identities=29%  Similarity=0.373  Sum_probs=37.0

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ....+.||++.|.|- |.||+++|++|..-|++|+..+|+...
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            346799999999986 789999999999999999999997654

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=93.16  E-value=0.056  Score=44.68  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccC--CCEEEEEcCCCCCC-------------CcccChhhhcc--cCcEEEEe
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASH-------------SQVSCQSSGWH--CKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~af--G~~V~~~~r~~~~~-------------~~~~~l~ell~--~sD~v~l~  208 (226)
                      +++|.|.|- |.||+.+++.|..-  |.+|++.+|+....             .+...+++++.  ..|+++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            478999987 99999999999887  89999999875442             12234556666  66776655

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.16  E-value=0.074  Score=43.35  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            378999999997   6999999999999999999999875

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.16  E-value=0.08  Score=41.17  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCC--EEEEEcCCCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~  188 (226)
                      .+++|.|.| .|.||+++++.|..-|.  +|++.+|++..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~   43 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA   43 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc
Confidence            468999998 89999999999999998  99999997653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.14  E-value=0.094  Score=43.63  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=34.3

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...|.||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus        24 s~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~   63 (273)
T 4fgs_A           24 TQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK   63 (273)
T ss_dssp             -CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346999999999875 699999999999999999999864

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=93.14  E-value=0.062  Score=45.90  Aligned_cols=50  Identities=20%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCC-EEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~-~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|.| .|.||+.+++.|..-|. +|+..|++.    +...+++++...|+|..+
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~----d~~~l~~~~~~~d~Vih~   53 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT----KEEELESALLKADFIVHL   53 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTC----CHHHHHHHHHHCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCC----CHHHHHHHhccCCEEEEC
Confidence            689999 89999999999998898 999999951    245788888899988765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.14  E-value=0.074  Score=45.39  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47899999999999999999999999 8999988644

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.13  E-value=0.087  Score=45.08  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|.|. |.||+.+++.++..|++|++.+++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~  205 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE  205 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4799999997 9999999999999999999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.11  E-value=0.071  Score=44.88  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~  186 (226)
                      .+|+|||.|.+|..+|..|..-|  .+|..+|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            47999999999999999998667  6899999964

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.10  E-value=0.094  Score=44.65  Aligned_cols=35  Identities=29%  Similarity=0.569  Sum_probs=32.7

Q ss_pred             CCCEEEEE-cCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIv-G~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|++|.|+ |.|.||...++.++.+|++|++.+++.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            68999999 799999999999999999999999864

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.10  E-value=0.063  Score=43.87  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=33.8

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   45 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQA   45 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence            5789999999985 7899999999999999999987753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.10  E-value=0.07  Score=45.23  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      .+|+|||.|.+|..+|..|..-|.  +|..+|+..
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            379999999999999999987787  999999974

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=93.10  E-value=0.079  Score=43.02  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999985 58999999999999999999999754

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=93.09  E-value=0.12  Score=43.67  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=42.0

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCC-----CEEEEEcCCCCCC--------------CcccChhhhccc---CcEEEEe
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFG-----VKIIATKRSWASH--------------SQVSCQSSGWHC---KQVISIF  208 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG-----~~V~~~~r~~~~~--------------~~~~~l~ell~~---sD~v~l~  208 (226)
                      +++|.|.| .|-||+.+++.|..-|     .+|++.+|+....              .+...+++++..   .|+|...
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~   79 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYV   79 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEEC
Confidence            57899998 5999999999999999     9999999975431              112345566766   7777544

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=93.09  E-value=0.1  Score=41.85  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999974 8999999999999999999999864

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=93.08  E-value=0.074  Score=43.87  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|+.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   6999999999999999999998875

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=93.08  E-value=0.13  Score=41.16  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ...+|++.|.| -|.||+++|+.|..-|++|+..+|+...
T Consensus         4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   43 (241)
T 1dhr_A            4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   43 (241)
T ss_dssp             --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhh
Confidence            35689999998 4799999999999999999999997643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.06  E-value=0.088  Score=45.52  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+| .+|++.+++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            5789999999999999999999999 59999998643

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=93.06  E-value=0.56  Score=39.34  Aligned_cols=59  Identities=17%  Similarity=0.059  Sum_probs=48.6

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC--C------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH--S------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~--~------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+++|=   +++....+..+.-||++|....|..-..  .      -..++++.++.+|+|...
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~~  212 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIWL  212 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEEC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEEe
Confidence            488999999996   8999999999999999999998843211  1      145688999999999885

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.06  E-value=0.23  Score=43.46  Aligned_cols=59  Identities=15%  Similarity=-0.017  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcCC----------hHHHHHHHHHccCCCEEEEEcCCCCCC---Cc---ccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASH---SQ---VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~---~~---~~~l~ell~~sD~v~l~  208 (226)
                      .+.|++|+|+|+-          +=...+++.|...|++|.+|||.....   ++   ..++++++..+|+++++
T Consensus       306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  380 (402)
T 1dlj_A          306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN  380 (402)
T ss_dssp             CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEEe
Confidence            5889999999983          467899999999999999999975443   11   24578889999999997

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.05  E-value=0.079  Score=43.13  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=34.7

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999999998 58999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.04  E-value=0.077  Score=47.44  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -+|-|+|+|++|+.+|+.|..-|..|+..++.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            468999999999999999999999999999864

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.03  E-value=0.14  Score=42.36  Aligned_cols=39  Identities=36%  Similarity=0.487  Sum_probs=34.7

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            3588999999985 78999999999999999999999865

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=93.01  E-value=0.12  Score=41.71  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~   47 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   47 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            357899999997 579999999999999999999999754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.01  E-value=0.082  Score=43.59  Aligned_cols=40  Identities=28%  Similarity=0.326  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+...
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4689999999985 789999999999999999999997543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.00  E-value=0.11  Score=42.26  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            478999999985 8999999999999999999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.00  E-value=0.097  Score=44.17  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=29.5

Q ss_pred             EEEEEcCChHHHHHHHHHcc--CCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRP--FGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~a--fG~~V~~~~r~~~  187 (226)
                      +|+|+|.|.+|..+|..|..  +|.+|..+|+...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            79999999999999999875  6899999999753

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=92.99  E-value=0.079  Score=45.73  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .-+|||.|||+||+.+.|.+..-+++|.+++.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~~~~ivaInd   52 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFERGIDIVAIND   52 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHHCCCCEEEEeC
Confidence            46899999999999999988766889877653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.98  E-value=0.087  Score=42.27  Aligned_cols=36  Identities=33%  Similarity=0.424  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .+.||++.|.|- |.||+++++.|..-|++|+..+|+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            578999999975 899999999999999999999997

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=92.98  E-value=0.13  Score=43.18  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCC-------CEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFG-------VKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG-------~~V~~~~r~~~  187 (226)
                      .+.+++|.|.| .|-||+++++.|..-|       .+|++.+|...
T Consensus        11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~   56 (342)
T 2hrz_A           11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQP   56 (342)
T ss_dssp             CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCC
T ss_pred             CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCC
Confidence            47889999999 6999999999999889       89999998753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.96  E-value=0.069  Score=45.73  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~  187 (226)
                      .|++|.|+|.|.||...++.++.+|++ |++.+++..
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  215 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEG  215 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            478999999999999999999999997 999887643

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.96  E-value=0.067  Score=45.86  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=25.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccC---CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF---GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af---G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.+.|.|..-   +++|.+.+-
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999998643   588887654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.96  E-value=0.066  Score=45.29  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -.|++|.|+| .|.||..+++.++.+|++|++.+++.
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  183 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD  183 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999 89999999999999999999999864

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=92.93  E-value=0.095  Score=42.28  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~   49 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   49 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcch
Confidence            357899999997 679999999999999999999998643

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=92.92  E-value=0.035  Score=47.32  Aligned_cols=55  Identities=11%  Similarity=0.088  Sum_probs=38.6

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEEE-EcCCCCCC--------C--cccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASH--------S--QVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~~-~~r~~~~~--------~--~~~~l~ell~~--sD~v~l~  208 (226)
                      -++||||+|.||+. .+..++.. +++|.+ +|+++...        .  .+.++++++..  -|+|.+.
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~   93 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIP   93 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEEC
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEe
Confidence            48999999999985 56666644 788875 56654321        1  26789999965  5777665

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=92.92  E-value=0.094  Score=42.33  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=34.6

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+.+|++.|.| .|.||+++|+.|..-|++|+..+|+..
T Consensus        11 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   50 (247)
T 1uzm_A           11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   50 (247)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            468899999998 479999999999999999999998754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.90  E-value=0.08  Score=43.01  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999999986 7899999999999999999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.88  E-value=0.11  Score=41.74  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+.+|++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999999975 8999999999999999999999864

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=92.87  E-value=0.46  Score=40.62  Aligned_cols=59  Identities=12%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|.+|+++|=|  ++....+..+.-|||+|....|..-..   .                -..++++.++.+|+|...
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            6899999999986  999999999999999999998843111   0                145678899999999875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=92.86  E-value=0.092  Score=42.11  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.+|++.|.|- |.||+++++.|..-|.+|+..+|+.
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   45 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3578999999975 8999999999999999999999864

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.86  E-value=0.12  Score=42.31  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.+|++.|.| .|.||+++|+.|...|++|+..+|+.
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            4568999999997 57999999999999999999999864

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=92.85  E-value=0.12  Score=42.18  Aligned_cols=39  Identities=21%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++||++.|-|-+ .||+++|++|..-|++|+..+|+...
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~   47 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADG   47 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3589999999875 69999999999999999999997543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.85  E-value=0.12  Score=42.31  Aligned_cols=40  Identities=20%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             CCCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       147 ~~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ....+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34678999999997 57999999999999999999999863

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.84  E-value=0.11  Score=42.22  Aligned_cols=38  Identities=26%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            458899999997 57999999999999999999999864

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=92.82  E-value=0.083  Score=44.44  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCC--CEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFG--VKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG--~~V~~~~r~~  186 (226)
                      ...+++|.|.|. |-||+.+++.|..-|  .+|++.+|..
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            467899999997 999999999999888  8999998864

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=92.80  E-value=0.2  Score=41.74  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=38.5

Q ss_pred             CEEEEEcCChHHHHHHHHHcc----CCCEEEE-EcCCCCCC---CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRP----FGVKIIA-TKRSWASH---SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a----fG~~V~~-~~r~~~~~---~~~~~l~ell~~--sD~v~l~  208 (226)
                      .+|||||+|.||+..++.+..    -++++.+ ++++....   ....++++++..  .|+|.+.
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~~~~~~ell~~~~vD~V~i~   72 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYIC   72 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEEC
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCCCCCHHHHhcCCCCCEEEEe
Confidence            489999999999999988875    3677665 55543211   224688999874  5666655

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=92.79  E-value=0.13  Score=42.35  Aligned_cols=39  Identities=23%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|+||++.|-|- +.||+++|++|..-|++|+..+|+...
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~   43 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPD   43 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCccc
Confidence            689999999986 469999999999999999999997554

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.79  E-value=0.089  Score=44.72  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC-----------------Cc--ccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH-----------------SQ--VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-----------------~~--~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+|.|.+|..+|..+..-|.  +|..+|+.....                 ..  ..+..+.++.||++++.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEEC
Confidence            69999999999999999876666  899999976421                 00  01345677888888876

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=92.79  E-value=0.31  Score=41.84  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCC-CEEEEEcCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG-~~V~~~~r~  185 (226)
                      .+|||+| +|.||+.+.+.|.... +++.++.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~   38 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR   38 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc
Confidence            5899999 8999999999997554 587776553

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.78  E-value=0.15  Score=41.79  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            45789999999986 589999999999999999999886

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=92.78  E-value=0.12  Score=43.36  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcC
Q 027226          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       150 ~l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      .+.||++.|.|-   |.||+++|+.|..-|++|+..+|
T Consensus         6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r   43 (315)
T 2o2s_A            6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTW   43 (315)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEEC
T ss_pred             cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEec
Confidence            478999999995   89999999999999999999875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.77  E-value=0.11  Score=43.15  Aligned_cols=39  Identities=33%  Similarity=0.363  Sum_probs=34.0

Q ss_pred             CCccCCCEEEEEcCC-h--HHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFG-N--IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~--IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.||++.|.|-+ .  ||+++|+.|..-|++|+..+|+.
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            346899999999984 4  99999999999999999998873

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.77  E-value=0.13  Score=41.69  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            478999999975 79999999999999999999998753

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=92.77  E-value=0.076  Score=43.88  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=33.0

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.| -|.||+++|+.|..-|++|+..+|+.
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468999999997 46899999999999999999999864

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=92.76  E-value=0.14  Score=42.05  Aligned_cols=38  Identities=37%  Similarity=0.488  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            578999999985 68999999999999999999999764

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=92.76  E-value=0.087  Score=45.23  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=25.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      .+|||+|+|+||+.+++.+... +++|.++.-
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d   33 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK   33 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            3799999999999999998754 578766543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.75  E-value=0.14  Score=42.51  Aligned_cols=40  Identities=28%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            35689999999986 78999999999999999999988653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.72  E-value=0.2  Score=41.19  Aligned_cols=39  Identities=26%  Similarity=0.170  Sum_probs=34.1

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...+.+|++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus        39 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   78 (285)
T 2c07_A           39 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   78 (285)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            3568899999997 57999999999999999999988753

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.71  E-value=0.095  Score=44.15  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=34.2

Q ss_pred             CCCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCC
Q 027226          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       147 ~~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ....+.||++.|.|- |.||+++|+.|..-|++|+..+|+
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            345789999999985 689999999999999999999886

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.70  E-value=0.065  Score=43.81  Aligned_cols=40  Identities=28%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+.||++.|.|- |.||+++|+.|..-|++|+..+|+..
T Consensus        22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            35689999999985 78999999999999999999999764

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=92.69  E-value=0.47  Score=41.01  Aligned_cols=59  Identities=20%  Similarity=0.143  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC---C----------------cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH---S----------------QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~---~----------------~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|.+|+++|=|  ++....+..+.-||++|....|..-..   .                -..++++.++.+|+|...
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            5889999999986  999999999999999999998842111   0                145678899999998875

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=92.68  E-value=0.14  Score=43.97  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |+|+|+|-|..|+.+++.++..|.+|+++++.+..
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~~~   36 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRS   36 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            68999999999999999999999999999986443

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.67  E-value=0.13  Score=41.57  Aligned_cols=38  Identities=32%  Similarity=0.453  Sum_probs=34.3

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..+.||++.|.|- |.||+++|+.|..-|++|+..+|+.
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4688999999986 6799999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-13
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-10
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-08
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	1e-07
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	3e-07
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	3e-07
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	5e-07
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	7e-07
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	4e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	5e-04
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.002
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	0.003

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDS 68
           T++            + KE+   +  ++V+       P+ +A       + V + +   +
Sbjct: 1   TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 69  NCISRANQMKLIM--QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
             +       +       VG++ +D+  A   G ++  +P        S     +  M+ 
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------YSYTTHAVRNMVV 113

Query: 127 LLRKQNEMRMAIEQK 141
                N     +E K
Sbjct: 114 KAFDNN--LELVEGK 126

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 46  ISDVPDVIANYHL---CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKV 102
           +     ++    L         R+ +  +++  ++K I     GL+ +   +     + V
Sbjct: 17  LRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 103 ARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG 162
           A   G    N      +   +++  +R                          +     G
Sbjct: 76  AGNAG---SNGYGNERVWRQMVMEAVR-------------------------NLITYATG 107

Query: 163 NIGVELAKRLRPFG 176
                +AKR    G
Sbjct: 108 GRPRNIAKREDYIG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             +  T+ L    + +   +++I++ G G + +DI +A   GI V  +P      +    
Sbjct: 47  ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP----AASVYSE 102

Query: 118 ELTIYLMLGLLRK 130
           + +I +     R+
Sbjct: 103 QASIEMREEAARE 115

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  +               +K I  + +G + +D++A    GIKV   P   T      A
Sbjct: 49  LITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMA 108

Query: 118 ELTIYLMLGLLRKQN 132
                L+  L    +
Sbjct: 109 HQANDLIDALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 12/118 (10%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 28  YTKEYLQNYPSIQVDVVPISDVPDV---IANYH-LCVVKTMRLDSNCISRANQMKLI--M 81
           Y K++ ++     ++        +       +  +  ++T    +    + +   +    
Sbjct: 15  YFKQWAKDTG-NTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLT 73

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 139
              VG + +D+ A  + GI+++ +P        +   +  + +  L+    +   + E
Sbjct: 74  IRNVGTDNIDMTAMKQYGIRLSNVPA---YTETAVHNMVYFSLQHLVDFLTKGETSTE 128

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 9   DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVVKTM 64
           +K+  + L         H    E L+      ++    +     + + I + H   +++ 
Sbjct: 1   EKDKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56

Query: 65  RL-DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
                + I+ A ++  I  F +G   VD++AA + GI V   P   T       E     
Sbjct: 57  THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQ---EAQENIGLE 113

Query: 124 MLGLLRKQ--NEMRM 136
           + G L K   N   +
Sbjct: 114 VAGKLIKYSDNGSTL 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           + D   VI+           L    I++A  +KL +  G+G + VD+ +A    + VA +
Sbjct: 87  LVDADVVISQPFWPAY----LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV 142

Query: 106 PGDVTGNAASCAELTIYLML 125
                 N+ +      Y   
Sbjct: 143 TY---CNSTTLTAQARYAAG 159

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.8 bits (105), Expect = 7e-07
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 39  IQVDVVPISDVPDVIA---NYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGVDINA 94
           ++V  V   D   ++A        +V++       + + A ++K++ + GVGL+ VD++A
Sbjct: 23  VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 82

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142
           AT  G+ V   P      + + A+      +    +       +    
Sbjct: 83  ATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAV 127

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-----LGVPTGETLLGKTVFILGFGNIGVELA 169
           + AE+ + L+LG  R+  E    I  +           GE L  KT+ I GFG+IG  LA
Sbjct: 4   ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALA 63

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSGWH 200
           KR + F + I       AS S  +   + +H
Sbjct: 64  KRAQGFDMDIDYFDTHRASSSDEASYQATFH 94

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 134 MRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 191
           +   IE        G       KT  + GFGN+G+   + L  FG K +A          
Sbjct: 15  IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV----GESDG 70

Query: 192 VSCQSSGWHCKQVISIFNEKGFSSGEYCSRRS 223
                 G   K++     + G   G   ++  
Sbjct: 71  SIWNPDGIDPKELEDFKLQHGTILGFPKAKIY 102

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
           T   + GK   + G+G++G   A+ LR FG ++I T+   
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           M+  +  + LG     +L G TV + G G +G  LA      G +++
Sbjct: 13  MKATVAHRGLG-----SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 115 SCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170
           S AE  + ++L L+R         R         V     L    V  +  G IG+ + +
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61

Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSGWHC 201
           RL PF V +  T R     S     +  WH 
Sbjct: 62  RLAPFDVHLHYTDRHRLPESVEKELNLTWHA 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.92
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.92
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.92
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.92
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.92
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.91
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.91
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.91
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.89
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.86
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.81
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.8
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.79
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.21
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	98.67
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.27
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.24
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.18
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.17
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.15
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.09
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.02
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.96
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.77
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.76
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.76
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.72
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.71
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.7
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.68
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.52
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.49
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.37
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.32
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.27
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.26
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.24
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.2
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.19
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.17
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.17
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.16
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.1
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.09
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.99
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.96
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.86
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.83
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.82
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.77
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.73
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.72
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.7
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.67
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.57
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.55
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.52
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.5
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.43
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.39
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.34
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.33
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.22
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.19
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.11
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	96.11
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.09
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.07
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.06
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.05
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.96
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.95
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.94
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.91
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.81
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.81
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.78
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.7
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.69
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.68
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.68
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.65
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.63
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.62
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.61
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.59
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.59
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.57
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.57
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.55
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.52
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.47
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.38
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.36
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.36
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.35
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.34
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.31
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.24
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.23
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.22
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.22
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.2
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.19
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	95.12
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.11
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.1
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.09
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.06
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.01
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.99
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.94
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.94
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.89
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.82
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.81
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.7
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.7
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.69
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.68
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.68
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.61
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.54
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.54
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.53
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.53
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.51
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.48
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.46
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.46
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.41
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.37
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.36
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.33
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.17
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.13
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.13
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.12
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.12
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.1
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.09
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.06
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.05
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.05
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.03
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.02
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.02
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.97
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.91
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.9
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	93.88
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.87
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.84
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.78
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.76
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.76
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.76
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.76
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.74
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.71
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.71
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.68
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.59
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.57
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.55
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.51
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.5
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.5
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.49
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.44
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.44
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.43
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.39
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.38
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.31
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.29
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	93.29
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.18
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.16
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.12
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.01
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.92
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.88
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.76
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.71
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.65
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.52
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.49
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	92.42
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.41
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.35
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.34
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.28
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.18
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.15
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.12
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	92.03
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	91.95
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.93
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	91.86
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.85
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.83
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.81
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.64
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	91.6
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.54
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.53
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.41
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.3
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.22
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.9
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	90.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.7
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	90.67
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.65
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	90.63
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.41
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.34
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.24
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.18
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.17
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.05
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.61
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.52
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.46
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	89.33
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.33
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.25
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.25
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.21
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	88.99
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	88.98
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.82
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	88.82
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.8
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.56
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.53
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.46
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.28
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.04
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.01
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	87.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.72
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	87.71
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.45
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.32
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	87.05
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	86.9
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	86.84
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.62
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.58
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	86.55
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.27
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	86.26
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.11
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.96
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	85.9
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.76
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.62
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	85.28
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.1
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.03
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.99
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.99
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	84.71
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	84.45
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	84.33
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.89
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	83.84
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.6
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.57
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	83.51
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.4
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	83.28
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	83.26
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.1
d2fcra_	173	Flavodoxin {Chondrus crispus [TaxId: 2769]}	82.79
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	82.75
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.66
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	82.42
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.68
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	81.5

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.92  E-value=1.6e-25  Score=177.00  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=98.2

Q ss_pred             chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC-CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--
Q 027226          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--  189 (226)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--  189 (226)
                      |++||||+++++|++.|++..+.+.++++.|... ...++.||||||+|+|+||+.+|+++++|||+|++|||++++.  
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccce
Confidence            4789999999999999999999999999999765 4457999999999999999999999999999999999987765  


Q ss_pred             CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          190 SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       190 ~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      ....+|+++++.||++++|     ++.++|+.+++++
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             eeeechhhhhhccchhhcccccccccccccccceeee
Confidence            3457899999999999999     7778888887764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=179.07  Aligned_cols=108  Identities=17%  Similarity=0.271  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---------CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---------~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      ++|||++++++|++.|++..+++.+++|.|..         ..+.+|+||||||||+|+||+++|++|++|||+|++|||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            57999999999999999999999999999975         247899999999999999999999999999999999999


Q ss_pred             CCCCC-------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          185 SWASH-------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       185 ~~~~~-------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      +.+..       ....+|+++++.||++++|     +|..+|+.++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~  129 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ  129 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTT
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhc
Confidence            87665       2356899999999999999     6788888887764

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=7.2e-26  Score=179.59  Aligned_cols=110  Identities=23%  Similarity=0.326  Sum_probs=100.3

Q ss_pred             CchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC--CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      |+.+||||+++++|++.|+++.+++.++++.|..  ..+.++.|||+||+|+|+||+++|+++++|||+|++|||+..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            5689999999999999999999999999999975  36789999999999999999999999999999999999987654


Q ss_pred             ------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          190 ------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       190 ------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                            ....+++|+++.||+|++|     +|..+|+.+++++
T Consensus        81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~  123 (184)
T d1ygya1          81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAK  123 (184)
T ss_dssp             HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhh
Confidence                  4577999999999999999     7888999888874

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.92  E-value=1.2e-25  Score=179.95  Aligned_cols=107  Identities=20%  Similarity=0.259  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHHHHHhhcHHHHHHHHHhCCC--CCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--
Q 027226          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--  189 (226)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w--~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--  189 (226)
                      .+||||+++++|+++|+++.+++.++++.|  ....+++|.||||||||+|+||+++|+++++|||+|++||++.++.  
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~   81 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE   81 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc
Confidence            679999999999999999999999988865  5557899999999999999999999999999999999999986643  


Q ss_pred             ---CcccChhhhcccCcEEEEe-----ccCCcccccccc
Q 027226          190 ---SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCS  220 (226)
Q Consensus       190 ---~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~  220 (226)
                         ....+|++++++||++++|     +|..+|+.++++
T Consensus        82 ~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~  120 (197)
T d1j4aa1          82 KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIA  120 (197)
T ss_dssp             HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHH
T ss_pred             cceeeeccccccccccccccccCCccccccccccHHHHh
Confidence               3467899999999999999     678888888775

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.92  E-value=1.2e-27  Score=177.49  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=97.9

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEecCccCCccch
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~   92 (226)
                      |||+++.+.+++   ..+ .++.+..  +...      ..++++|+++++  +++++.++++|+||||++.++|+||+|.
T Consensus         1 Mki~v~~~lp~e---~~e-~L~~~~~--v~~~------~d~~~~d~~l~~--~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPPE---AEE-ELRKYFK--IVRG------GDLGNVEAALVS--RITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCHH---HHH-HHHTTCE--EECS------SCCTTBCCCCBS--CCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCHH---HHH-Hhhhcce--Eeec------ccccccceeeee--ccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            789998877532   223 3333212  2111      235678887765  7899999999999999999999999999


Q ss_pred             hHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHH
Q 027226           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  172 (226)
Q Consensus        93 ~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l  172 (226)
                      +.+ +++|+|+|++|+   |+.+||||+++++|++.|+                         +||+|+|+||+++|+|+
T Consensus        67 ~~~-~~~i~v~n~~g~---~~~~vae~~~~~il~~~r~-------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESI-PPHVTVAGNAGS---NGYGNERVWRQMVMEAVRN-------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTS-CTTSCEECCCSS---SSSSCHHHHHHHHHHHHHH-------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHh-ccCeEEEECCCC---ChHHHHHHHHHHHHHhcCC-------------------------EEEEcCCHHHHHHHHHH
Confidence            887 579999999999   9999999999999999973                         68999999999999999


Q ss_pred             ccCC
Q 027226          173 RPFG  176 (226)
Q Consensus       173 ~afG  176 (226)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9998

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.92  E-value=1.4e-25  Score=180.07  Aligned_cols=108  Identities=21%  Similarity=0.221  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC---CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-
Q 027226          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-  189 (226)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-  189 (226)
                      ++||||+++++|++.|++..+++.++++.|..   ..+++|.||||||+|+|+||+++|++|++|||+|++|||+.... 
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   82 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchhh
Confidence            68999999999999999999999999999953   35789999999999999999999999999999999999986654 


Q ss_pred             ---CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          190 ---SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       190 ---~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                         .+..+++++++.||++++|     +|.++|+.+++++
T Consensus        83 ~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~  122 (199)
T d1dxya1          83 HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL  122 (199)
T ss_dssp             CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHH
T ss_pred             hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhc
Confidence               4567899999999999999     7788888887753

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.5e-25  Score=174.25  Aligned_cols=110  Identities=25%  Similarity=0.212  Sum_probs=97.3

Q ss_pred             CchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCC--CCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       112 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      |+++||||+++++|++.|+++.++..++++.|.+.  .+.++.|++|||+|+|+||+.+|+++++|||+|++||++.+..
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            57899999999999999999999999999999764  4678999999999999999999999999999999999976654


Q ss_pred             ----CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          190 ----SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       190 ----~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                          ....+|+|+++.||++++|     .|..+|+.+++++
T Consensus        81 ~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~  121 (188)
T d1sc6a1          81 LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISL  121 (188)
T ss_dssp             CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHH
T ss_pred             hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhh
Confidence                3467899999999999999     6778888887764

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=3.7e-25  Score=166.05  Aligned_cols=127  Identities=17%  Similarity=0.190  Sum_probs=104.4

Q ss_pred             CCceEEEeCCCCCCchhhHHHHHhcCCCeEEec-CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCccCC
Q 027226           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        11 ~~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      +|+|||++.+..+..   ++ .++...++.+.. .+.+++.+.++++|++++. ..++++++++++|+||+|++.|+|+|
T Consensus         1 sMpkvli~~~~~~~~---~~-~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPST---VA-ALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGG---GT-TSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHH---HH-HHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            478999998775542   22 233333444433 2446778889999988874 56799999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCCC
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG  144 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~  144 (226)
                      |||+++++++||+|+|+||+   ++.+|||++++++|++.|++....+.+++|.|.
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            99999999999999999999   889999999999999999999887777777763

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.91  E-value=1.8e-24  Score=172.39  Aligned_cols=108  Identities=29%  Similarity=0.309  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC-----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       114 ~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+|||++++++|++.|++..+++.++++.|..     ..+.+++|+|+||+|+|+||+++|+++++|||+|++|+++...
T Consensus         3 ~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1           3 VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccc
Confidence            68999999999999999999999999999963     2578999999999999999999999999999999999997664


Q ss_pred             C--------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          189 H--------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       189 ~--------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                      .        ....+|+++++.||+|++|     +|.++|+.++++.
T Consensus        83 ~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~  128 (191)
T d1gdha1          83 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKS  128 (191)
T ss_dssp             HHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTT
T ss_pred             cchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhC
Confidence            3        2357899999999999999     7889999888764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.89  E-value=1.4e-23  Score=166.87  Aligned_cols=107  Identities=19%  Similarity=0.231  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHHHHHhCCCCC----CCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-
Q 027226          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-  189 (226)
Q Consensus       115 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-  189 (226)
                      +||||+++++|++.|++..+++.++++.|..    ..+.+++|++|||+|+|+||+++|++|++|||+|++|+|...+. 
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            6999999999999999999999999999964    24678999999999999999999999999999999999976543 


Q ss_pred             -------CcccChhhhcccCcEEEEe-----ccCCccccccccc
Q 027226          190 -------SQVSCQSSGWHCKQVISIF-----NEKGFSSGEYCSR  221 (226)
Q Consensus       190 -------~~~~~l~ell~~sD~v~l~-----~~~d~i~~~~~~~  221 (226)
                             ....+|+++++.||++++|     +|..+|+.+++++
T Consensus        82 ~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~  125 (188)
T d2naca1          82 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKL  125 (188)
T ss_dssp             HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTT
T ss_pred             ccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHh
Confidence                   2457899999999999999     7888999888764

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.86  E-value=4.9e-22  Score=149.00  Aligned_cols=118  Identities=11%  Similarity=0.242  Sum_probs=96.1

Q ss_pred             ceEEEeCCCCCCchhhHHHHHhcCCCeEEec---CCCCChhhhcCCceEEEE-cCCCCCHHHHhcCC--CceEEEecCcc
Q 027226           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG   86 (226)
Q Consensus        13 ~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~~--~Lk~I~~~~aG   86 (226)
                      |||++.... +...++++++.+.+ ++++..   ...++..+.++++|++++ +..++++++++++|  +||+|+..|+|
T Consensus         1 MKIl~~~~~-~~e~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecC-cCcHHHHHHHHHHc-CeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            789988655 34466677766554 333332   234677788899998776 45689999999865  89999999999


Q ss_pred             CCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHH
Q 027226           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR  135 (226)
Q Consensus        87 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~  135 (226)
                      +||||+++++++||+|+|+||+   ++++||||+++++|++.|++.+..
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999   789999999999999999987753

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.9e-21  Score=145.85  Aligned_cols=114  Identities=19%  Similarity=0.247  Sum_probs=88.4

Q ss_pred             CCCceEEEeCCCCCCchhhHHHHHhcC-CCeEEec--CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEecCc
Q 027226           10 KNITRVLFCGPHFPASHNYTKEYLQNY-PSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (226)
Q Consensus        10 ~~~~~Ilv~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~~~Lk~I~~~~a   85 (226)
                      .++||||++.+.++..   ++.+.+.. ..+....  .+++++.+.++++|++++. ...+++++++++|+||+|+..|+
T Consensus         2 k~kmKILv~d~i~~~a---~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gv   78 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQKA---LESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (132)
T ss_dssp             CSSCCEEECSCCCHHH---HHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CCCCEEEEECCCCHHH---HHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecc
Confidence            4679999999875432   33333332 2333322  3456778889999998874 46799999999999999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhh
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R  129 (226)
                      |+||||+++++++||+|+|+||+   ++.+|||++.+++++..|
T Consensus        79 G~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~  119 (132)
T d1sc6a2          79 GTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLI  119 (132)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhh
Confidence            99999999999999999999998   789999987666544333

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.81  E-value=3.3e-20  Score=139.38  Aligned_cols=113  Identities=12%  Similarity=0.191  Sum_probs=95.3

Q ss_pred             eEEEeCCCCCCchhhHHHHHhcCCCeEEecCC---CCChhhhcCCceEEEE-cCCCCCHHHHhcCC--CceEEEecCccC
Q 027226           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVGL   87 (226)
Q Consensus        14 ~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~adv~i~-~~~~~~~~~l~~~~--~Lk~I~~~~aG~   87 (226)
                      ||++.... ++..++++++.+.++++++...+   .+++.+.++++|++++ +..++++++++++|  +||+|++.|+|+
T Consensus         2 KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~   80 (134)
T d1j4aa2           2 KIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGV   80 (134)
T ss_dssp             EEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCC
T ss_pred             eEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCc
Confidence            78888655 45577888888888888876543   3567788899998887 46789999999754  799999999999


Q ss_pred             CccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHH
Q 027226           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  133 (226)
Q Consensus        88 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~  133 (226)
                      ||||++++.++||+|+|+|++      ++||+++++||++.|++..
T Consensus        81 d~ID~~aa~~~gI~V~N~P~~------svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          81 DNIDMAKAKELGFQITNVPVY------SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             TTBCHHHHHHTTCEEECCCCS------CCBHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHhCCeEEEECCCC------cHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999987      3789999999999998754

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=136.13  Aligned_cols=125  Identities=14%  Similarity=0.230  Sum_probs=94.0

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecC-CCCChh-hhcCCceEEEE-cCCCCCHHHHhcCCCceEEEecCccCC
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV-PISDVP-DVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLE   88 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~adv~i~-~~~~~~~~~l~~~~~Lk~I~~~~aG~d   88 (226)
                      ||.|++.+.....   .....++...++.+... +.+++. +.+.+++.+++ ...++++++++++|+||+|+..|+|+|
T Consensus         1 mP~v~~ld~~d~~---~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGRDCT---VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCSCCT---TTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCCcch---hhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            4677777754322   12445666666665432 334444 44566776665 467899999999999999999999999


Q ss_pred             ccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhhcHHHHHHHHHhCCC
Q 027226           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL  143 (226)
Q Consensus        89 ~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w  143 (226)
                      |||+++++++||.|+|+||+   +. ++|||+++++|++.|++++..+....+.|
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~~a~~g~~~~~~  128 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIRRAITGRIPDSL  128 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHHHHHhccccchh
Confidence            99999999999999999998   55 46999999999999999887553333333

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.79  E-value=3.6e-20  Score=138.31  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=86.2

Q ss_pred             CceEEEeCCCCCCchhhHHHHHhcCCCeEEecC----CCCChhhhcCCceEEEE-cCCCCCHHHHhcCC-CceEEEecCc
Q 027226           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVV-KTMRLDSNCISRAN-QMKLIMQFGV   85 (226)
Q Consensus        12 ~~~Ilv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~adv~i~-~~~~~~~~~l~~~~-~Lk~I~~~~a   85 (226)
                      ++||+++.+.++   +.++.+.+.+ ++.+...    +.+++.+.++++|++++ +..++++++++++| +||+|++.|+
T Consensus         1 K~kVlit~~~~~---~~~~~l~~~~-~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPE---AAMARARESY-DVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCH---HHHHHHHTTS-EEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCH---HHHHHHHcCC-cEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            478999987743   3344444433 4444322    33567788899998776 56789999999997 7999999999


Q ss_pred             cCCccchhHHHhCCcEEEecCCCCCCCchhHHHHHHHHHHHHhh
Q 027226           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (226)
Q Consensus        86 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~l~~~L~~~R  129 (226)
                      |+||||+++++++||+|+|+||+   ++++|||+++++++.+.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999   899999977665555443

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.77  E-value=9.8e-20  Score=141.75  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             CChhhhcCCceEEEEc---CCCCCHHHHhcCCCceEEEecCccCCccchhHHHhCCcEEEecCCCCCCCchhHHHHH---
Q 027226           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT---  120 (226)
Q Consensus        47 ~~~~~~~~~adv~i~~---~~~~~~~~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~~---  120 (226)
                      +++.+.+.+||++++.   ...++++.++++||||+|++.++|+||||++++.++||+|+|++|+   |+.+||||+   
T Consensus        81 ~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~---n~~SVAEha~~~  157 (186)
T d2naca2          81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSTTLTAQARYA  157 (186)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THCSHHHHHHHH
T ss_pred             HHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEEECCCc---CcHHHHHHHHHH
Confidence            4567889999999984   4679999999999999999999999999999999999999999999   999999999   


Q ss_pred             -----HHHHHHHhhcHHHHHHHHHhCCC
Q 027226          121 -----IYLMLGLLRKQNEMRMAIEQKKL  143 (226)
Q Consensus       121 -----l~~~L~~~R~~~~~~~~~~~~~w  143 (226)
                           +++++...|++...+..+++|+|
T Consensus       158 ~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         158 AGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             HHHHHHHHHHHhccchhhhhhhhhcccc
Confidence                 77888888888877766777766

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.1e-12  Score=96.95  Aligned_cols=73  Identities=19%  Similarity=0.297  Sum_probs=62.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      ...|.|||++|+|||.||+.+|+++++|||+|+++++.|-..       +....++++++.+|+++.. .+.+.|..+-+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTGn~~vI~~eh~   98 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHF   98 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHH
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCCCccchhHHHH
Confidence            568999999999999999999999999999999999986443       4577899999999988888 44577776655


Q ss_pred             c
Q 027226          220 S  220 (226)
Q Consensus       220 ~  220 (226)
                      .
T Consensus        99 ~   99 (163)
T d1li4a1          99 E   99 (163)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=98.67  E-value=5.8e-09  Score=78.90  Aligned_cols=72  Identities=17%  Similarity=0.151  Sum_probs=60.6

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe-ccCCccccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF-NEKGFSSGEYC  219 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~  219 (226)
                      .-.+.||++.|+|||.+|+-+|++|+++|++|+.+...|-..       ++..+++++++.+|+++.. ...++|..+-+
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn~~vI~~~h~   97 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHL   97 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHH
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCCCccccHHHH
Confidence            467999999999999999999999999999999998876332       5678899999999999887 55566665543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.27  E-value=3.9e-07  Score=71.40  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcc-cCcEEEEeccCCccccccc
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWH-CKQVISIFNEKGFSSGEYC  219 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~-~sD~v~l~~~~d~i~~~~~  219 (226)
                      .|.||||+|-|||++|+.+|+.|..+|++|+++|......       .+..+.++++. .+|++.-....+.|+.+..
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA~~~~I~~~~a  101 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVA  101 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECSCSCCBCHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeecccccccccHHHH
Confidence            6999999999999999999999999999999998854321       23556677776 6899998887777776543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=4.1e-07  Score=62.33  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      +++||+|.|+|+|..|+++|+.|...|++|+++|.+..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            5789999999999999999999999999999999976654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=2.7e-07  Score=69.55  Aligned_cols=54  Identities=20%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|..-|.+|++|||+++..        ....+..|+...+|++.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~   63 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITM   63 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEE
Confidence            69999999999999999999999999999986542        2356778899999998877

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.17  E-value=3.7e-07  Score=68.85  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++||+||+|.+|..+|++|..-|.+|.+|||+++..        ....++.+++..+|++.+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEEC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeec
Confidence            589999999999999999999999999999975442        2356788999999998775

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.15  E-value=5.8e-07  Score=67.68  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=43.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------C-cccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------S-QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~-~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|..+|+.|+.-|.+|++|||+....        . ...+..+.++.+|++.+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIila   64 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLC   64 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeeccccccccccccc
Confidence            69999999999999999999999999999974321        1 122334678999988876

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.09  E-value=1.2e-06  Score=62.03  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      -.++||+|+|+|.|.+|.+-|++|..+|++|+.+++...++
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~   48 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQ   48 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChH
Confidence            47999999999999999999999999999999999876543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.02  E-value=1.9e-06  Score=64.03  Aligned_cols=54  Identities=22%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|.+|+.+|+.|..-|++|++|++.....        .-..+.+|+...+|++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~   63 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISA   63 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEEC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEE
Confidence            69999999999999999999999999999876543        1245678999999999887

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=3.7e-06  Score=62.23  Aligned_cols=53  Identities=23%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~  208 (226)
                      ..-++|+||| +|.+|+.+|+.|+.-|.+|.+||+....     ..++....+|++.+.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----~~~~~~~~~~~v~~~   60 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----VAESILANADVVIVS   60 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----GHHHHHTTCSEEEEC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----ccchhhhhccccccc
Confidence            4457999999 9999999999999999999999997544     456677788887776

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.82  E-value=3.8e-06  Score=63.87  Aligned_cols=56  Identities=14%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .++|||||+|.+|..+|++|..-|.+|++|||++...                ....++.+....+|++.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEe
Confidence            4689999999999999999999999999999986421                1123444666777777665

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.82  E-value=5.8e-06  Score=62.11  Aligned_cols=62  Identities=23%  Similarity=0.344  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-----------CcccChhhhcccCcEEEEeccC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-----------SQVSCQSSGWHCKQVISIFNEK  211 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-----------~~~~~l~ell~~sD~v~l~~~~  211 (226)
                      .++++++.|||.|.+|+.+++.|...|. +|..++|+....           ....++.+.+.++|+++....+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC
Confidence            6899999999999999999999999999 699999974332           3456778888999999888443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.77  E-value=8.9e-06  Score=60.41  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|||||+|++|+++++.|..-|.+|+.++|+....         ....+.+++...+|++.+.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIila   64 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILG   64 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEEC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeee
Confidence            69999999999999999998899999999874432         1245678899999998876

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=3.1e-05  Score=50.98  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |||||+|-|..|+.++.-++.+|.+|+.+|+....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999997654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.76  E-value=8.3e-06  Score=61.24  Aligned_cols=55  Identities=24%  Similarity=0.228  Sum_probs=39.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC--------C--cccChh-hhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH--------S--QVSCQS-SGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~--------~--~~~~l~-ell~~sD~v~l~  208 (226)
                      |+|+|||+|.||..+|+.|+..|  .+|++||++....        .  .....+ .....+|++.+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila   69 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS   69 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc
Confidence            58999999999999999998766  4899999975321        0  112222 233578888887

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.72  E-value=8e-06  Score=61.68  Aligned_cols=59  Identities=25%  Similarity=0.144  Sum_probs=47.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------------CcccChhhhcccCcEEEEec
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      .||++|+|.|.+|..+|..|...|.+|..|+|++...                       .-..++.|.++.+|++.+.-
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            3899999999999999999999999999999964221                       01345788899999999873


Q ss_pred             cC
Q 027226          210 EK  211 (226)
Q Consensus       210 ~~  211 (226)
                      .+
T Consensus        81 ~~   82 (184)
T d1bg6a2          81 PA   82 (184)
T ss_dssp             CG
T ss_pred             ch
Confidence            33

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.71  E-value=8.7e-05  Score=59.25  Aligned_cols=74  Identities=23%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC-----CC--------------------------c-ccChh
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-----HS--------------------------Q-VSCQS  196 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~~--------------------------~-~~~l~  196 (226)
                      ..|.|+||.|-|||++|+.+|+.|...|++|++++-+...     ..                          + ..+-+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            4799999999999999999999999999999998754210     00                          0 01124


Q ss_pred             hhc-ccCcEEEEeccCCcccccccccc
Q 027226          197 SGW-HCKQVISIFNEKGFSSGEYCSRR  222 (226)
Q Consensus       197 ell-~~sD~v~l~~~~d~i~~~~~~~~  222 (226)
                      +++ ..+|++.-....+.|+.+-..+-
T Consensus       107 ~i~~~~~DIliPcA~~~~I~~~~a~~i  133 (242)
T d1v9la1         107 AIFKLDVDIFVPAAIENVIRGDNAGLV  133 (242)
T ss_dssp             GGGGCCCSEEEECSCSSCBCTTTTTTC
T ss_pred             hhccccccEEeecchhccccHHHHHhc
Confidence            444 47899999888888887765543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.2e-05  Score=55.34  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=35.8

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      ...+.||||+|-|.+|+.+|.-++.+|++|+.+|+++...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            4456789999999999999999999999999999987654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.68  E-value=4.7e-05  Score=60.36  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhc-ccCcEEEEeccCCcccccc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGW-HCKQVISIFNEKGFSSGEY  218 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell-~~sD~v~l~~~~d~i~~~~  218 (226)
                      ..+|.|+||.|-|||++|+.+|+.|...|++|++.|.+....        ....+.++++ ..+|+++-.+..+.|+.+-
T Consensus        34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~I~~~~  113 (230)
T d1leha1          34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFT  113 (230)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCCBSTTH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccccccChHH
Confidence            457999999999999999999999999999999998754221        1233444544 5789999998888887664


Q ss_pred             c
Q 027226          219 C  219 (226)
Q Consensus       219 ~  219 (226)
                      .
T Consensus       114 ~  114 (230)
T d1leha1         114 I  114 (230)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.49  E-value=2.1e-05  Score=56.64  Aligned_cols=59  Identities=15%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhh-cccCcEEEEeccCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSG-WHCKQVISIFNEKG  212 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~el-l~~sD~v~l~~~~d  212 (226)
                      |++.|+|+|++|+.+|+.|...|.+|+.++..+...               .....|+++ +..+|.+.+.-+.|
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCch
Confidence            678999999999999999999999999999864321               123334443 67788766653333

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.37  E-value=3.7e-05  Score=56.75  Aligned_cols=53  Identities=23%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCC-CEEEEEcCCCCCC--------Cc-ccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASH--------SQ-VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG-~~V~~~~r~~~~~--------~~-~~~l~ell~~sD~v~l~  208 (226)
                      +||+||+|++|+++++.|..-| .+|..++|++...        .. ..+.+ .+..+|++.+.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~-~v~~~Div~la   64 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP-ELHSDDVLILA   64 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC-CCCTTSEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccc-cccccceEEEe
Confidence            6999999999999999775445 7999999985432        11 22333 35678888775

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.32  E-value=5.5e-05  Score=57.11  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +|||||+|.+|..+|+.|..-|.+|++|||++.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            599999999999999999999999999999643

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=2.2e-05  Score=57.87  Aligned_cols=52  Identities=12%  Similarity=0.077  Sum_probs=36.4

Q ss_pred             EEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          156 VFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      ||+||+|++|+.+|+.|+. +.. +..|+|++...        ....+++++...+|++.+.
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~   62 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVI   62 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEEC
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEe
Confidence            7999999999999999987 444 45788875442        2356788999999999887

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.26  E-value=0.00086  Score=54.62  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=65.9

Q ss_pred             chhHHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC-----
Q 027226          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA-----  187 (226)
Q Consensus       113 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~-----  187 (226)
                      .++++--++..+-.++++.......   +     ....|.|+||.|=|||++|+.+|+.|...|++|++++-+..     
T Consensus         4 ~eATG~GV~~~~~~~l~~~~~~~~~---g-----l~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~   75 (293)
T d1hwxa1           4 ISATGRGVFHGIENFIENASYMSIL---G-----MTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNP   75 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHH---T-----CCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCT
T ss_pred             chHhHHHHHHHHHHHHHhcccchhc---c-----CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccc
Confidence            3556666666666666543321111   1     23579999999999999999999999999999999875321     


Q ss_pred             CCCc--------------------ccChhhhc-ccCcEEEEeccCCcccccccc
Q 027226          188 SHSQ--------------------VSCQSSGW-HCKQVISIFNEKGFSSGEYCS  220 (226)
Q Consensus       188 ~~~~--------------------~~~l~ell-~~sD~v~l~~~~d~i~~~~~~  220 (226)
                      ...+                    ...-++++ ..+|++.-.+..+.|+.+-..
T Consensus        76 ~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliPaA~~~~I~~~~a~  129 (293)
T d1hwxa1          76 DGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAP  129 (293)
T ss_dssp             TCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEECSSSSCBCTTTGG
T ss_pred             cccchHHHHHHHHHcCCeecccccccCCcccccCCccEEeeccccccccHHHHH
Confidence            1000                    11123344 478888888888887766443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.24  E-value=8.5e-05  Score=56.83  Aligned_cols=60  Identities=17%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC--------------------CcccChhhhcccCcEEE
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH--------------------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~  206 (226)
                      +.+|+||++.|.| -|.||+++|+.|...|++|+..+|+....                    ....++++++...|+++
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            6799999999999 79999999999999999999999975331                    12345667788888776


Q ss_pred             E
Q 027226          207 I  207 (226)
Q Consensus       207 l  207 (226)
                      .
T Consensus        98 n   98 (191)
T d1luaa1          98 T   98 (191)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00053  Score=54.21  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHH-ccCCCEEEEEcCCCCC-----C---------------------CcccChhhhcc
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWAS-----H---------------------SQVSCQSSGWH  200 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l-~afG~~V~~~~r~~~~-----~---------------------~~~~~l~ell~  200 (226)
                      +.++.|+||.|=|+|++|+.+|+.| +.+|++|++++-+...     .                     .+..+-++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            4578999999999999999999999 5799999988743210     0                     11223345554


Q ss_pred             -cCcEEEEeccCCcccccccc
Q 027226          201 -CKQVISIFNEKGFSSGEYCS  220 (226)
Q Consensus       201 -~sD~v~l~~~~d~i~~~~~~  220 (226)
                       .+|+++-....+.|+.+-..
T Consensus       106 ~~~DI~~PcA~~~~I~~~~a~  126 (234)
T d1b26a1         106 LDVDILVPAALEGAIHAGNAE  126 (234)
T ss_dssp             SCCSEEEECSCTTCBCHHHHT
T ss_pred             cccceeecchhcccccHHHHH
Confidence             89999888888877766443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.0001  Score=55.61  Aligned_cols=60  Identities=27%  Similarity=0.370  Sum_probs=50.3

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC--------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH--------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~--------~~~~~l~ell~~sD~v~l~  208 (226)
                      .-|++|+|+|||||+-|++=|.-|+--|++|+.=-|.....        .+..+++|..+.+|++.++
T Consensus        12 ~~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L   79 (182)
T d1np3a2          12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMIL   79 (182)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEEC
T ss_pred             HHHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeee
Confidence            46789999999999999999999999999987755543322        4567788999999999998

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.17  E-value=0.00037  Score=52.17  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=42.5

Q ss_pred             CCEEEEEcCChHHHHHHHHHccC-CCEEEE-EcCCCCCC-----CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASH-----SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~af-G~~V~~-~~r~~~~~-----~~~~~l~ell~~sD~v~l~  208 (226)
                      .-+|||+|+|.||+..++.++.. ++++.+ ++++.+..     ....++++++...|++++.
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~   65 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLC   65 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEEC
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEe
Confidence            34799999999999999999976 678665 45554332     2355677788889988877

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.0016  Score=51.52  Aligned_cols=73  Identities=26%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHc-cCCCEEEEEcCCCCCC--------------------------CcccChhhhc-c
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASH--------------------------SQVSCQSSGW-H  200 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~-afG~~V~~~~r~~~~~--------------------------~~~~~l~ell-~  200 (226)
                      ..|.|+||.|-|||++|+.+|+.|. .+|++|++.+-+....                          ....+-++++ .
T Consensus        28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~  107 (239)
T d1gtma1          28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLEL  107 (239)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHS
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeecccccccc
Confidence            4599999999999999999999884 7999999986542110                          0111223433 5


Q ss_pred             cCcEEEEeccCCccccccccc
Q 027226          201 CKQVISIFNEKGFSSGEYCSR  221 (226)
Q Consensus       201 ~sD~v~l~~~~d~i~~~~~~~  221 (226)
                      .+|+++-....+.|+.+-..+
T Consensus       108 ~~DIl~PcA~~~~I~~~~a~~  128 (239)
T d1gtma1         108 EVDVLAPAAIEEVITKKNADN  128 (239)
T ss_dssp             CCSEEEECSCSCCBCTTGGGG
T ss_pred             cccEEeeccccccccHHHHHh
Confidence            789998888888888765544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00021  Score=52.57  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=32.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      +|+|+|.|.||..+|..|..-|.+|..++|+....
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            69999999999999999999999999999986553

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.10  E-value=0.00024  Score=52.64  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|.|+|.|.+|+.+|+.|..-|.+|+.++|+..
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            479999999999999999999999999999999754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.00023  Score=52.99  Aligned_cols=33  Identities=39%  Similarity=0.567  Sum_probs=30.8

Q ss_pred             EEEEE-cCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIv-G~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ||+|+ |.|.||+++|++|...|.+|..++|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            69999 8999999999999999999999999754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00035  Score=53.45  Aligned_cols=57  Identities=14%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ..|+|.|+| .|.||+++++.|..-|.+|.++.|++...               .+..++++.+..+|++...
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEE
Confidence            468999999 79999999999998899999999875432               1245567888999987654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00034  Score=53.60  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=32.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |+|+|||.|.+|+.+|..+...|++|+.||+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            7999999999999999999999999999999754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0019  Score=48.42  Aligned_cols=68  Identities=12%  Similarity=0.213  Sum_probs=56.4

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCccccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCSR  221 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~~  221 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|..++.+.+      ++.+..+++|+++.. ...+++..+.++.
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------~l~~~~~~aDivi~a~G~~~~i~~~~vk~  103 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------HLDEEVNKGDILVVATGQPEMVKGEWIKP  103 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------SHHHHHTTCSEEEECCCCTTCBCGGGSCT
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------cHHHHHhhccchhhccccccccccccccC
Confidence            5689999999999987 899999999999999999887633      678889999999876 5666666665543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00037  Score=52.15  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +..+.||+|.|+|.|..+++++--|...|++|..++|+...
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~k   53 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSR   53 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHH
Confidence            45788999999999999999999999999999999998543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00049  Score=51.17  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|.+|.|+|.|.+|...+..++.+|++|+++++++..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            5799999999999999999999999999999998654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.0003  Score=51.85  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      +||+||+|.+|..+|++|..-|..| .|+|+....       .......+.+..+|++.+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   61 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC   61 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEEC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEec
Confidence            6999999999999999998777766 466654332       1122233455566666654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.77  E-value=0.00047  Score=49.22  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      +|.|+|+|++|+.+|+.|...|.+|+.++..+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            689999999999999999999999999998653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.73  E-value=0.00042  Score=52.35  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=43.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+|.|..|.++|..|..-|-+|..|.|...++                       ....++++.+..+|++.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a   78 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG   78 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence            69999999999999999998899999998742211                       1135678889999999876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.72  E-value=0.00032  Score=53.39  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+|||.|.+|+.+|..+...|++|+.||++++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6799999999999999999999999999999754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0025  Score=47.45  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=55.7

Q ss_pred             CCccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEEe-ccCCcccccccc
Q 027226          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISIF-NEKGFSSGEYCS  220 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l~-~~~d~i~~~~~~  220 (226)
                      +.++.||++.|||-+. +|+-+|.+|..-|++|+....+.      .++.+.++++|+++.. ...++|..+.++
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------~~l~~~~~~ADivI~a~G~p~~i~~~~vk  100 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------KNLRHHVENADLLIVAVGKPGFIPGDWIK  100 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------SCHHHHHHHCSEEEECSCCTTCBCTTTSC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------chhHHHHhhhhHhhhhccCcccccccccC
Confidence            5689999999999998 89999999999999999886643      3678899999999887 556666665554

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.69  E-value=0.00098  Score=51.82  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             ccCC-CEEEEEcCChHHHHHHHHHcc------CCCEEEEEcCCCCCC--------Cc-----ccChhhhcccCcEEEEe
Q 027226          150 TLLG-KTVFILGFGNIGVELAKRLRP------FGVKIIATKRSWASH--------SQ-----VSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~g-ktvgIvG~G~IG~~vA~~l~a------fG~~V~~~~r~~~~~--------~~-----~~~l~ell~~sD~v~l~  208 (226)
                      .+.| |+|+|||||+-|.+=|.-|+-      -|.+|+.-=|.....        ..     ..+.+|..+.+|++.++
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiL  118 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLL  118 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEEC
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEe
Confidence            4678 999999999999999999997      567765443433332        11     23456899999999998

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.67  E-value=0.00042  Score=51.92  Aligned_cols=60  Identities=18%  Similarity=0.097  Sum_probs=48.9

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      ......+|.|+|.|..|...++.++++|++|..+|.+...-               .....+++.++++|++.-.
T Consensus        28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEe
Confidence            35677999999999999999999999999999999974332               1234577888889988765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00082  Score=49.02  Aligned_cols=40  Identities=23%  Similarity=0.421  Sum_probs=36.1

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..|.||+|.|||-|.+|.+-|+.|..+|++|+.+++...+
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~   48 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHK   48 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECT
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence            4699999999999999999999999999999999875443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.55  E-value=0.0016  Score=52.01  Aligned_cols=37  Identities=41%  Similarity=0.660  Sum_probs=34.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +.+|.|+||.|=|||++|+.+|+.|...|++|++++-
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            3579999999999999999999999999999998754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.52  E-value=0.00042  Score=52.95  Aligned_cols=59  Identities=15%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC---------------C-------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------------H-------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------------~-------~~~~~l~ell~~sD~v~l~  208 (226)
                      ++=++|+|+|.|+.|.++|..|..-|-+|..|+|....               .       .-..++++++..+|++.+.
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            34468999999999999999999889999999975311               0       0134578888889988776


Q ss_pred             c
Q 027226          209 N  209 (226)
Q Consensus       209 ~  209 (226)
                      -
T Consensus        85 v   85 (189)
T d1n1ea2          85 I   85 (189)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.50  E-value=0.0012  Score=48.75  Aligned_cols=58  Identities=10%  Similarity=0.033  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC--------------------CcccChhhhcccCcEEEEec
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH--------------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      +.++|+|||.|++|+.+|-.++..+. ++..+|......                    ......++.++.+|++++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            46899999999999999988876564 899999765321                    01234567889999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.46  E-value=0.0017  Score=49.22  Aligned_cols=39  Identities=23%  Similarity=0.384  Sum_probs=35.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+...+|.|+|.|..|...++.++++|++|..+|.+...
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            455679999999999999999999999999999987654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.43  E-value=0.0014  Score=48.40  Aligned_cols=37  Identities=32%  Similarity=0.533  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.|.+|.|+|.|.||...+..++.+|++|++++++..
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            3567999999999999999999999999999998743

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.0013  Score=50.46  Aligned_cols=54  Identities=22%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC------------C----------------CcccChhhhcccCcEEE
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS------------H----------------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~------------~----------------~~~~~l~ell~~sD~v~  206 (226)
                      +|+|+|+|.+|..+|..+..-|.+|++||...+.            +                ....++++.+..+|++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~   81 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEE
Confidence            6999999999999999999999999999985321            0                01344567778889887


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      +.
T Consensus        82 i~   83 (202)
T d1mv8a2          82 IC   83 (202)
T ss_dssp             EC
T ss_pred             Ee
Confidence            77

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0013  Score=48.68  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|.+|.|+|.|.||...++.++.+|+++++.+++.+.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            4789999999999999999999999999999886543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.34  E-value=0.0024  Score=44.60  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=32.9

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++|.|||-|.||-++|..|+.+|.+|..+.|..+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            389999999999999999999999999999987543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.0017  Score=48.63  Aligned_cols=37  Identities=32%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      -.|.+|.|+|.|.||...+..++.+|+ +|++.++++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            358999999999999999999999998 7999998654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.00038  Score=52.05  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .+++|.|+|.|..|++++.-|+..|+ +|..++|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            57999999999999999999999998 69999998654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0024  Score=44.92  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |++.|||.|-||-++|..|..+|++|..+.+..+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            79999999999999999999999999999887654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.0023  Score=47.09  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...+..++.+|.+|++.++++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            478999999999999999999999999999998753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.19  E-value=0.0026  Score=44.16  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|||-|.||-++|..+..+|.+|..+.+..+-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            89999999999999999999999999999887653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.11  E-value=0.0021  Score=48.07  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC------------------CcccChhhhcccCcEEEEec
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH------------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      +.+++||+|.|+|.|..+++++-.|...| +|..++|+....                  ....+++..+..+|+++...
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence            34699999999999999999999999888 999999975431                  12345666777888887763

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.11  E-value=0.0065  Score=41.77  Aligned_cols=72  Identities=15%  Similarity=0.069  Sum_probs=52.4

Q ss_pred             CCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCCC------cccChhhhcccCcEEEEe-ccCCc--
Q 027226          153 GKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHS------QVSCQSSGWHCKQVISIF-NEKGF--  213 (226)
Q Consensus       153 gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~~------~~~~l~ell~~sD~v~l~-~~~d~--  213 (226)
                      .|+|||+|+          .+-.-.+.+.|+..|++|.+|||......      -..++++++..+|++.+. .+.+|  
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~~~~~~~~~   94 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQD   94 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSSCCGGGGG
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEcCCchHHHh
Confidence            369999998          56788999999999999999999876541      135789999999987654 23333  


Q ss_pred             ccccccccccc
Q 027226          214 SSGEYCSRRSF  224 (226)
Q Consensus       214 i~~~~~~~~~~  224 (226)
                      +.+--+||.=|
T Consensus        95 ~~~Kv~tr~if  105 (108)
T d1dlja3          95 VKNKVYSRDIF  105 (108)
T ss_dssp             GGGGEECCCCS
T ss_pred             cCcccCCCCCC
Confidence            22334455444

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0035  Score=47.09  Aligned_cols=41  Identities=24%  Similarity=0.273  Sum_probs=36.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      +.++++|+|.|+|.|..|++++..|...|+ +++.++|++..
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~   54 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF   54 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHH
Confidence            457899999999999999999999999999 68888987653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.09  E-value=0.0032  Score=47.64  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+|+|+|.+|..+|..++ .|.+|+|||...
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            6999999999999998774 699999999764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.07  E-value=0.00084  Score=53.55  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+||++.|.| .+.||+++|++|..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68999999999 66799999999999999999999975

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.06  E-value=0.0022  Score=48.11  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=25.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      ++|||-|||+|||.+.|.+... .++|.+.+-
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec
Confidence            5899999999999999988644 478887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.0025  Score=43.04  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCChHH-HHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIG-VELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG-~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -+.|++=++|.|.+| .++|+.|+..|++|.|+|+...+
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~   44 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV   44 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence            356899999999999 56699999999999999987543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0038  Score=48.87  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             CccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++|+||++.|-|-++ ||+++|++|..-|++|+..+|+...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            479999999998765 9999999999999999999987543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.95  E-value=0.0036  Score=46.35  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      ...+..++|+|||.|++|..+|-.+...|.  ++..+|...
T Consensus        15 ~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          15 EATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            345667899999999999999999987776  899999853

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0042  Score=43.73  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |++.|||-|.||-++|..++.+|.+|..+.|+.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7999999999999999999999999999999754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0044  Score=42.98  Aligned_cols=35  Identities=31%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|||-|.||-++|..++.+|.+|..+.+..+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            78999999999999999999999999999997654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.87  E-value=0.0046  Score=49.64  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=36.4

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...|+||++.|-| .|.||+++|+.|..-|++|+..+|+..
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4689999999998 789999999999999999999999743

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.81  E-value=0.0049  Score=42.99  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=32.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|||-|-||-++|..++.+|++|..+.+..+.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            88999999999999999999999999999886543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.81  E-value=0.0029  Score=44.52  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|||-|-||-++|..++.+|++|..+.|+...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            89999999999999999999999999999987654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.012  Score=43.03  Aligned_cols=55  Identities=13%  Similarity=0.054  Sum_probs=39.4

Q ss_pred             CEEEEEcCChHHHH-HHHHHccC-CCEEEE-EcCCCCCC---------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASH---------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~af-G~~V~~-~~r~~~~~---------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+|||||+|.+|+. .+..++.. ++++++ +|++....         .-..+++++....|++.+.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~   68 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVH   68 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhccccccc
Confidence            37999999999986 46666654 788765 56655432         1245678888889988766

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.78  E-value=0.006  Score=42.29  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+++|.|+|-|.||-++|..|+.+|.+|..+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            34799999999999999999999999999999987544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.77  E-value=0.0048  Score=46.45  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=26.3

Q ss_pred             EEEEEcCChHHHHHHHHHccC-CCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~  185 (226)
                      +|||.|||+|||.++|.+..- +++|.+++..
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~   34 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKT   34 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECC
Confidence            799999999999999999744 6898887543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.70  E-value=0.0047  Score=43.63  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=32.5

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|||-|-||-++|..++.+|.+|..+.+.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            79999999999999999999999999999987544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.69  E-value=0.0056  Score=45.02  Aligned_cols=54  Identities=11%  Similarity=0.217  Sum_probs=38.0

Q ss_pred             EEEEEcCChHHHH-HHHHHccC-CCEEEEEcCCCCCC----------CcccChhhhcc-cCcEEEEe
Q 027226          155 TVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSWASH----------SQVSCQSSGWH-CKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~-vA~~l~af-G~~V~~~~r~~~~~----------~~~~~l~ell~-~sD~v~l~  208 (226)
                      +|||||+|.+|+. ....++.+ ++++.++++++...          ....+.++++. ..|++.+.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccc
Confidence            7999999999976 57777766 66888888864221          12456677775 44777665

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.011  Score=44.35  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=39.4

Q ss_pred             CCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       143 w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |..+......+|+|.|||-|..|-+.|..|+..|.+|..|++.+..
T Consensus        33 ~~~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          33 TKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             TTSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cccccCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            3333456778899999999999999999999999999999997654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.68  E-value=0.006  Score=43.93  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=40.4

Q ss_pred             EEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+|.|++|..+|-.+...|  -++..+|......                   ....+-.+.++.+|++++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvit   76 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIIT   76 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEE
Confidence            6999999999999999998666  4899999865432                   0112334567888888776

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0054  Score=45.23  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...+..++.+|+ +|++.+++..
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            46799999999999999999999999 7999998743

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.0046  Score=46.26  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=25.5

Q ss_pred             CEEEEEcCChHHHHHHHHHcc-CCCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r  184 (226)
                      .+|||.|||+|||.++|.+.. =.++|.++.-
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEec
Confidence            489999999999999998864 4578777654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.62  E-value=0.0054  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      ++|+|||.|++|..+|-.+..-+. ++..+|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            699999999999999988875554 8999998654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.61  E-value=0.0047  Score=48.91  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcC-C--hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-G--NIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G--~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|+||++.|.|- |  .||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            489999999997 4  4999999999999999999998743

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0058  Score=48.12  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=35.6

Q ss_pred             CccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..|+||++.|-|-++ ||+++|+.|...|++|+.++|+..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999999876 999999999999999999999743

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0013  Score=51.91  Aligned_cols=37  Identities=27%  Similarity=0.467  Sum_probs=34.0

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      ..|++++|.|+|.|.+|..+|..|...|. +++.+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            46999999999999999999999999999 78888874

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0072  Score=45.14  Aligned_cols=67  Identities=16%  Similarity=0.161  Sum_probs=49.9

Q ss_pred             CCCccCCCEEEEEcCChH-HHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEE
Q 027226          147 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       147 ~~~~l~gktvgIvG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~  206 (226)
                      .+.++.||++.|||-+.| |+-+|.+|..-|+.|.-.+......                   ...+.+.+....+|+++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            466999999999999986 9999999999999998776532110                   01223677778899988


Q ss_pred             Ee-ccCCc
Q 027226          207 IF-NEKGF  213 (226)
Q Consensus       207 l~-~~~d~  213 (226)
                      .- ...+|
T Consensus       103 savG~p~~  110 (171)
T d1edza1         103 TGVPSENY  110 (171)
T ss_dssp             ECCCCTTC
T ss_pred             EccCCCcc
Confidence            66 34444

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.57  E-value=0.0032  Score=49.45  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.||++.|.|-++ ||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998876 999999999999999999998743

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.55  E-value=0.01  Score=42.78  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=27.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~~  188 (226)
                      ++|+|||.|++|..+|-.+...|  -++..+|+....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            58999999999999998886444  489999987654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.0043  Score=43.58  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=30.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +++.|||-|-||-++|..++.||.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999999875

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.01  Score=39.35  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CEEEEEcCChHHH-HHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGV-ELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~-~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+|=++|-|.+|. .+|+.|+..|++|.|.|+...+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~   37 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE   37 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence            4688999999998 7899999999999999987544

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.40  E-value=0.0095  Score=43.42  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=41.1

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEec
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      ..+|+|||.|.+|+.+|-.+..-+. ++..+|+.....                   ....+-.+.++.+|++++..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvita   79 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA   79 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEec
Confidence            3689999999999999988864443 899999865432                   01123346778899888873

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.38  E-value=0.0035  Score=46.74  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=35.3

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+.||+|.|+|.|..|++++.-|..-+.+|+.++|+.+.
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            4688999999999999999999988777899999998543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.36  E-value=0.0097  Score=41.62  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+|+|.|+|-|-||-++|..|+.+|.+|..+.+....
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            34689999999999999999999999999999886543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.36  E-value=0.0075  Score=43.99  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.+|.|.|.|.||...+..++.+|.+|++.+++..
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            478999999999999999999999999999988644

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.35  E-value=0.011  Score=40.26  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ..+..||+|.|||-|.-|..+|.-+...+-+|+...++...
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            46799999999999999999999999998887776665444

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.007  Score=43.85  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCC--EEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEecc
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~~~  210 (226)
                      .+|+|+| .|++|+.+|-.+..-|.  ++..+|......                 ....+..+.++.||++++..-
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence            4799999 59999999999986666  688898753221                 123445677889999998733

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.31  E-value=0.0067  Score=47.98  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++||++.|-|-++ ||+++|++|..-|++|+..+|+...
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            68999999998775 9999999999999999999997654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.30  E-value=0.0058  Score=45.35  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~~  188 (226)
                      -.+|+|.|||-|.+|-..|..|+..|++ |..++++...
T Consensus         2 ~~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            3579999999999999999999999995 9899987554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.24  E-value=0.011  Score=41.25  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=33.3

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++++.|||-|-||-++|..|+..|.+|..+.++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            589999999999999999999999999999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.23  E-value=0.011  Score=45.68  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|+|.|||-|--|-..|..|+..|++|..++++...
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            699999999999999999999999999999987543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.22  E-value=0.0083  Score=44.59  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.||...+..++.+|+ +|++.+++.+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            47899999999999999999999998 6999998754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.22  E-value=0.0018  Score=51.68  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=35.4

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..+|+||++.|-| -+.||+++|+.|..-|++|+..+++..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4569999999998 789999999999999999999887643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.20  E-value=0.0075  Score=47.16  Aligned_cols=41  Identities=27%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      ++|.||++.|-|-+ .||+++|++|..-|++|+..+|+....
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            47999999999987 499999999999999999999976543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.009  Score=46.83  Aligned_cols=37  Identities=30%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|.|-+ .||+++|++|..-|++|+..+|+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5899999999865 599999999999999999999964

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.12  E-value=0.022  Score=43.92  Aligned_cols=68  Identities=18%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHcc--------------------CCC-EEEEEcCCCCCC--CcccChhhhcccCcE
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRP--------------------FGV-KIIATKRSWASH--SQVSCQSSGWHCKQV  204 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~a--------------------fG~-~V~~~~r~~~~~--~~~~~l~ell~~sD~  204 (226)
                      ...+.|++|.|||-|+++--+|+.|..                    .|. +|..+.|+...+  ....+|.|+....++
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~  113 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGT  113 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTE
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCC
Confidence            467889999999999999999998865                    577 688888876654  445668888888888


Q ss_pred             EEEeccCCccc
Q 027226          205 ISIFNEKGFSS  215 (226)
Q Consensus       205 v~l~~~~d~i~  215 (226)
                      .......|+..
T Consensus       114 ~~~~~~~~~~~  124 (225)
T d1cjca1         114 RPMLDPADFLG  124 (225)
T ss_dssp             EEECCGGGGTT
T ss_pred             cceechhhhcc
Confidence            88876666653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.11  E-value=0.0096  Score=46.74  Aligned_cols=38  Identities=21%  Similarity=0.457  Sum_probs=33.8

Q ss_pred             CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+|+||++.|-|.+   .||+++|++|..-|++|+..+|+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            36899999999985   499999999999999999888864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.10  E-value=0.01  Score=46.94  Aligned_cols=38  Identities=32%  Similarity=0.428  Sum_probs=34.1

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35899999999875 599999999999999999999864

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0071  Score=48.04  Aligned_cols=38  Identities=39%  Similarity=0.583  Sum_probs=34.6

Q ss_pred             CccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|+||++.|.|-++ ||+++|+.|...|++|+..+|+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            459999999998876 99999999999999999999964

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.06  E-value=0.0093  Score=44.37  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      -.|.+|.|+|.|.||...+..++++|+ +|+..+++...
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            467899999999999999999999999 57788886543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.03  E-value=0.011  Score=42.64  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~  186 (226)
                      +||+|.|||-|.+|-++|..|+.+|  .+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998766  6899998865

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.02  E-value=0.0091  Score=46.87  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcC-Ch--HHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~--IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|.|. |.  ||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            589999999996 54  99999999999999999988754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.011  Score=46.30  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4899999999875 699999999999999999999864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.99  E-value=0.0085  Score=47.79  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             CccCCCEEEEEcCC---hHHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G---~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      -.|+||++.|-|.+   .||+++|+.|...|++|+..+|.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47999999999986   59999999999999999988764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.94  E-value=0.012  Score=40.54  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +++.|+|-|-||-++|..++.+|.+|..+.+.++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            79999999999999999999999999999887554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.94  E-value=0.012  Score=46.51  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999877 599999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.89  E-value=0.016  Score=40.36  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++++.|+|-|-||-++|..|+.+|.+|..+.+.+.-
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            378999999999999999999999999999987543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.01  Score=46.33  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCCh---HHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFGN---IGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G~---IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.||++.|-|-++   ||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            48999999999764   999999999999999999998744

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.86  E-value=0.012  Score=43.79  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      --.|.||.|+|.|.+|...+..++.+|+ +|++.|++...
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            3468899999999999999999999995 89999997554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.014  Score=45.96  Aligned_cols=37  Identities=22%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +|+||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6899999999875 599999999999999999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.81  E-value=0.0099  Score=42.98  Aligned_cols=54  Identities=13%  Similarity=0.111  Sum_probs=38.9

Q ss_pred             CEEEEEcCChHHHHHHHHHc--cCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~--afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+|+|||.|++|..+|-.+.  ++.-++..+|......                   ....+. +.++.||++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVit   76 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVIT   76 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEe
Confidence            47999999999999998876  5545899999864321                   012233 457788888886

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.70  E-value=0.0072  Score=45.06  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=26.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r  184 (226)
                      +|||=|||+|||.+.|.+...+.+|.+.+-
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            689999999999999999877888888764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.70  E-value=0.019  Score=42.22  Aligned_cols=51  Identities=12%  Similarity=0.162  Sum_probs=34.3

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC----CEEEEEcCCCCCC----CcccChhhhcccCcE
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASH----SQVSCQSSGWHCKQV  204 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG----~~V~~~~r~~~~~----~~~~~l~ell~~sD~  204 (226)
                      -+|||||+|.+|+..++.++...    ..+...+...+..    ....++++++...++
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~i   66 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEI   66 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCc
Confidence            38999999999999988887643    3444443322221    235578888876654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.69  E-value=0.041  Score=42.07  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHc--------------------cCCC-EEEEEcCCCCCC--CcccChhhhcccCcE
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLR--------------------PFGV-KIIATKRSWASH--SQVSCQSSGWHCKQV  204 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~--------------------afG~-~V~~~~r~~~~~--~~~~~l~ell~~sD~  204 (226)
                      ...+.|++|.|||-|+.+--+|+.|.                    ..|. +|..+.|+...+  ....+|.|+....+.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~  113 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV  113 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTE
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCChhhhhhhcccCCC
Confidence            45688999999999999999999875                    6787 588888876554  345567788887777


Q ss_pred             EEEeccCC
Q 027226          205 ISIFNEKG  212 (226)
Q Consensus       205 v~l~~~~d  212 (226)
                      .......+
T Consensus       114 ~~~~~~~~  121 (216)
T d1lqta1         114 DVVIDPAE  121 (216)
T ss_dssp             EEECCGGG
T ss_pred             CccCCHHH
Confidence            77765444

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.68  E-value=0.01  Score=46.38  Aligned_cols=52  Identities=25%  Similarity=0.346  Sum_probs=40.5

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccC--cEEE
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCK--QVIS  206 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~s--D~v~  206 (226)
                      +|.|.|- |-||+.+++.|+.-|.+|++.+|+.-+-.....+++++...  |++.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vi   57 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVI   57 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEE
Confidence            5889996 99999999999999999999999754333455667777643  5543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.68  E-value=0.015  Score=45.18  Aligned_cols=36  Identities=25%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            78999999997 5699999999999999999999963

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.017  Score=45.36  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=35.2

Q ss_pred             CCccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +..|+||++.|-|- +.||+++|++|..-|++|+..+|+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999999986 6899999999999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.61  E-value=0.011  Score=43.78  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=34.5

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      .--.|.+|.|+|.|.+|...+..++++|+ +|++.|++.+.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            34567899999999999999999999997 79999887543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.0097  Score=43.98  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|++|.|.|- |.+|+...+.++.+|++|++.++++..
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccc
Confidence            5789999995 999999999999999999999887543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.54  E-value=0.017  Score=45.63  Aligned_cols=37  Identities=24%  Similarity=0.410  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6899999999986 599999999999999999999863

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.54  E-value=0.012  Score=46.62  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|+||++.|-|-++ ||+++|++|..-|++|+..+|+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            478999999998765 99999999999999999999874

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.53  E-value=0.019  Score=44.91  Aligned_cols=38  Identities=29%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.||++.|-|-+ .||+++|+.|..-|++|+..+|+..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5899999999875 5999999999999999999998754

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.53  E-value=0.018  Score=42.79  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=26.5

Q ss_pred             CEEEEEcCChHHHHHHHHHc---cCCCEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLR---PFGVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~---afG~~V~~~~r~  185 (226)
                      .+|||=|||+|||.+.|.+.   ..+.+|.+.+-.
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            37999999999999999875   456898888653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.51  E-value=0.023  Score=45.96  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .+||+|.|.| .|-||+.+++.|..-|.+|++++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999998 889999999999999999999999754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.48  E-value=0.031  Score=40.95  Aligned_cols=38  Identities=16%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      ..++..+|+|||.|++|..+|-.+...|.  ++..+|...
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34566799999999999999999986665  899999763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.019  Score=42.18  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.+|.|.|. |.||....+.++.+|++|++.++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            5789999995 9999999999999999999998764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.46  E-value=0.016  Score=41.91  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~  186 (226)
                      ..++|+|||.|++|..+|..|...|  -+|..+|+..
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4679999999999999999998655  5899999764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.018  Score=44.98  Aligned_cols=37  Identities=24%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999865 599999999999999999999974

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.41  E-value=0.013  Score=46.53  Aligned_cols=37  Identities=32%  Similarity=0.310  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|.|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999986 4699999999999999999999864

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.40  E-value=0.014  Score=43.47  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=24.8

Q ss_pred             EEEEEcCChHHHHHHHHHc---cCCCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLR---PFGVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~---afG~~V~~~~r~  185 (226)
                      +|||=|||+|||.+.|.+.   .-.++|.+.+-.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            7999999999999999765   334788877653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.37  E-value=0.018  Score=41.64  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      -.+++|+|||.|.+|..+|-.+...|.  ++..+|+..
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            457899999999999999999875554  899999754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.36  E-value=0.026  Score=39.84  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ++++.|||-|-||-++|..++..|.+|..+.+....
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            589999999999999999999999999999997654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=94.33  E-value=0.012  Score=43.67  Aligned_cols=31  Identities=32%  Similarity=0.450  Sum_probs=26.8

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      +|||=|||+|||.+.|.+..=+.+|.+.+-.
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~   32 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDL   32 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCC
Confidence            6999999999999999987667888887653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.17  E-value=0.018  Score=46.86  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +.|||.|+| .|.||+.+++.|..-|.+|++..|++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            468999999 6999999999999999999999987554

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.021  Score=42.27  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=26.6

Q ss_pred             EEEEEcCChHHHHHHHHHccC-CCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af-G~~V~~~~r~  185 (226)
                      +|||=|||+|||.+.|.+... .++|.+.+-.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            799999999999999988654 6888888764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.13  E-value=0.015  Score=45.87  Aligned_cols=39  Identities=18%  Similarity=0.200  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|+||++.|-|-+ .||+++|+.|..-|++|+...|+...
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~   41 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN   41 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            5899999999887 59999999999999998888776443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.017  Score=45.18  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|+||++.|-|- +.||+++|++|..-|++|+..+|+..
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999985 56999999999999999999998743

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.12  E-value=0.024  Score=42.75  Aligned_cols=36  Identities=31%  Similarity=0.467  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.||.|+|.|.||...+..++.+|+ +|++.+++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            47899999999999999999999999 7999988753

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.10  E-value=0.023  Score=44.86  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999854 599999999999999999999863

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.09  E-value=0.024  Score=44.37  Aligned_cols=37  Identities=19%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|- +.||+++|++|..-|++|+..+|+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999987 5599999999999999999999964

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.06  E-value=0.037  Score=43.36  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .++|.|.| .|.||+.+++.|..-|.+|++.+|+...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   39 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV   39 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence            46799999 6999999999999999999999986543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.05  E-value=0.027  Score=44.07  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|+||++.|-| -+.||+++|+.|..-|++|+..+|+.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999998 678999999999999999999998743

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.05  E-value=0.03  Score=39.52  Aligned_cols=27  Identities=26%  Similarity=0.516  Sum_probs=24.2

Q ss_pred             EEEEEcC-ChHHHHHHHHHccCCCEEEE
Q 027226          155 TVFILGF-GNIGVELAKRLRPFGVKIIA  181 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~afG~~V~~  181 (226)
                      +|||+|+ |+.|+++++.+..-|+++.+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~   29 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVL   29 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence            6999996 99999999999988998664

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.03  E-value=0.026  Score=40.70  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=27.8

Q ss_pred             EEEEEc-CChHHHHHHHHHccCCC--EEEEEcCCC
Q 027226          155 TVFILG-FGNIGVELAKRLRPFGV--KIIATKRSW  186 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~  186 (226)
                      +|+|+| .|.+|+.+|-.+...|.  ++..+|+..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            699999 59999999999987775  899998763

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.03  E-value=0.0068  Score=48.13  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=34.7

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ++|+||++.|-|- +.||+++|+.|..-|++|+..+|+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4799999999985 67999999999999999999998743

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.02  E-value=0.011  Score=42.04  Aligned_cols=60  Identities=22%  Similarity=0.077  Sum_probs=48.6

Q ss_pred             CccCCCEEEEEcC----------ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhc
Q 027226          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGW  199 (226)
Q Consensus       149 ~~l~gktvgIvG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell  199 (226)
                      ..+.+++|||+|+          ++-...+++.|...|++|.+|||.....                   .-..++++++
T Consensus         9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i   88 (136)
T d1mv8a3           9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV   88 (136)
T ss_dssp             TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH
T ss_pred             HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh
Confidence            3467899999998          6788899999999999999999843210                   1146788999


Q ss_pred             ccCcEEEEe
Q 027226          200 HCKQVISIF  208 (226)
Q Consensus       200 ~~sD~v~l~  208 (226)
                      ..+|+++++
T Consensus        89 ~~~D~ivi~   97 (136)
T d1mv8a3          89 ASSDVLVLG   97 (136)
T ss_dssp             HHCSEEEEC
T ss_pred             hhceEEEEE
Confidence            999999998

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.02  E-value=0.052  Score=37.45  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=45.5

Q ss_pred             CEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      |+|.|+|.    |..|..+.+.|+.+|++|+.++++.+..   ..+.+++++=..-|++++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~   63 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFV   63 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEEC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEE
Confidence            78999994    6889999999999999999999875443   2366788877788988877

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.00  E-value=0.019  Score=45.18  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             CccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ++|.||++.|-|-++ ||+++|+.|..-|++|+...++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            579999999998665 9999999999999999875443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.022  Score=40.78  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             EEEEEcCChHHHHHHHHHc--cCCCEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLR--PFGVKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~--afG~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|||.|++|..+|-.+.  .+.-++..+|......                 .-..+-.+.++.||++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit   74 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA   74 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence            7999999999999998776  5556899999753221                 0011223457888888776

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.91  E-value=0.019  Score=45.21  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |+||++.|-|-++ ||+++|++|..-|++|+..+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            7899999987765 99999999999999999999874

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.90  E-value=0.055  Score=41.39  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=37.2

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      ...-.+|+|.|||-|..|-..|..|+..|++|..+++..+..
T Consensus        44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          44 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             CCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            355689999999999999999999999999999999876553

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.88  E-value=0.038  Score=42.68  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      .||+|.|.|- |.||+++|+.|..-|++|+..++...+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~   39 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE   39 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4899999988 5699999999999999999998865543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.038  Score=43.35  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             CCccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       148 ~~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ...++||++.|-|-+ .||+++|++|..-|++|+.++|+.
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            356999999999864 799999999999999999999874

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.042  Score=39.54  Aligned_cols=54  Identities=24%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             EEEEEcC-ChHHHHHHHHHc---cCCCEEEEEcCCCCCC-----------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASH-----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~-G~IG~~vA~~l~---afG~~V~~~~r~~~~~-----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|+|. |++|+.+|-.++   .++-++..+|..+...                 ....+-.+.++.||++++.
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit   76 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS   76 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence            7999995 999999998763   5677999999753221                 0012223467889999887

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.78  E-value=0.014  Score=43.88  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=40.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCC--CEEEEEcCCCCCC--------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSWASH--------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG--~~V~~~~r~~~~~--------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +||.|.| .|.||+++++.|..-|  ..|+...|++...              .....+.++++..|.+..+
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEE
Confidence            6999999 7999999999998666  5677777764221              1244456778888887766

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.76  E-value=0.023  Score=44.62  Aligned_cols=37  Identities=27%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            388999999987 6799999999999999999999863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.76  E-value=0.03  Score=44.08  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999876 599999999999999999999864

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.76  E-value=0.016  Score=44.67  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCChHHH-HHHHHHccC-CCEEEE-EcCCCCCC--------------CcccChhhhcccC--cEEEEe
Q 027226          152 LGKTVFILGFGNIGV-ELAKRLRPF-GVKIIA-TKRSWASH--------------SQVSCQSSGWHCK--QVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~G~IG~-~vA~~l~af-G~~V~~-~~r~~~~~--------------~~~~~l~ell~~s--D~v~l~  208 (226)
                      +.-+|||||+|.+|+ .++..++.. +++|.+ +|+++...              ..+.++++++...  |++.+.
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~  107 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYII  107 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEEC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeec
Confidence            446999999999997 466766655 788775 56653221              1246788988754  445443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.76  E-value=0.025  Score=46.65  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             CCEEEEEcCChHHHHHHHHH-ccCCC-EEEEEcCCCCCC---------------CcccChhhhcccCcEEEEec
Q 027226          153 GKTVFILGFGNIGVELAKRL-RPFGV-KIIATKRSWASH---------------SQVSCQSSGWHCKQVISIFN  209 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l-~afG~-~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~~  209 (226)
                      -++++|+|.|..++.-++.+ .-|+. +|..|+|++...               ....++++.++.||+++...
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecc
Confidence            37999999999999888766 46776 699999975331               13667899999999998764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.028  Score=45.21  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=34.1

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46999999999865 599999999999999999999864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.71  E-value=0.027  Score=40.65  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=28.8

Q ss_pred             CEEEEEcCChHHHHHHHHHccCC--CEEEEEcCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG--~~V~~~~r~~~  187 (226)
                      |+|+|||.|.+|..+|-.+...|  -++..+|....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            79999999999999999887555  48999998543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.71  E-value=0.028  Score=41.27  Aligned_cols=39  Identities=21%  Similarity=0.406  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      --.|.||.|+|.|.+|...+..++.+|. +|++.+++.+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            3467999999999999999999999996 89999987654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.68  E-value=0.011  Score=43.69  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.+|.|.| .|.+|...++.++.+|++|++..++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            478999988 59999999999999999999988764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.59  E-value=0.024  Score=44.50  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999855 599999999999999999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.019  Score=36.96  Aligned_cols=38  Identities=16%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.|.+|.|.|- |.+|....+.++.+|++|++..++++.
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            46788999876 999999999999999999999887543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=93.55  E-value=0.021  Score=42.43  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=25.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      -+|||=|||+|||.+.|.+-.- ..+|.+.+-
T Consensus         2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             cEEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            3899999999999999987633 578877754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.012  Score=43.34  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .|++|.|.|- |.+|..+++.++.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH
Confidence            4789999955 559999999999999999999887543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.03  Score=40.16  Aligned_cols=32  Identities=9%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .+-|+|+|++|+.+++.|...|.+|+.++..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            48899999999999999999999999998764

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.50  E-value=0.055  Score=39.07  Aligned_cols=58  Identities=16%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      |.|+||++||=   +++....+..+..||+++....|..-..               ....++++.++.+|++...
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~   77 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT   77 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEee
Confidence            68999999998   6899999999999999999998843221               1246789999999988776

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.028  Score=44.14  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|-+ .||+++|++|..-|++|+..+|+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999875 699999999999999999999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.44  E-value=0.03  Score=43.52  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +.|+|.|.|- |.||+.+++.|..-|.+|++++|....
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3588999995 999999999998889999999997554

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.44  E-value=0.025  Score=41.66  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEE-EEEcCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKI-IATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V-~~~~r~~  186 (226)
                      -.|.+|.|+|.|.||...+..++++|+++ ++.++++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            45899999999999999999999999965 5556654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.43  E-value=0.025  Score=44.90  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999875 599999999999999999999864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.40  E-value=0.039  Score=43.76  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            388999999986 6899999999999999999999874

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.054  Score=42.14  Aligned_cols=37  Identities=30%  Similarity=0.304  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.||++.|.| -+.||+++|+.|..-|++|+..+|+.
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            38999998886 46899999999999999999999874

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.38  E-value=0.074  Score=37.91  Aligned_cols=57  Identities=12%  Similarity=0.068  Sum_probs=47.6

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      +-|+|.|||.    |+.|..+++.|+.+|++|+.+++.....   ..+.++.++-..-|++++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~   81 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF   81 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEE
Confidence            4689999996    5799999999999999999999875443   2467888888888998887

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.31  E-value=0.022  Score=40.93  Aligned_cols=53  Identities=13%  Similarity=-0.061  Sum_probs=38.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC--EEEEEcCCCCCC--------------------CcccChhhhcccCcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASH--------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~--~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|+|||.|++|..+|-.+...|.  ++..+|......                    ....+ -+.++.+|++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvit   76 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVT   76 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEe
Confidence            79999999999999998875554  799999754221                    01122 3577888888876

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.29  E-value=0.053  Score=42.33  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             CccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ..|.+|++.|.|- +.||+++|+.|..-|++|+.++|+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5688999999987 5799999999999999999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.026  Score=41.47  Aligned_cols=55  Identities=25%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHcc-CCCEEEE-EcCCCCCC----------------CcccChhhhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRSWASH----------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~a-fG~~V~~-~~r~~~~~----------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+|+|.|+ |++|+++++.+.. =++++.+ +++...+.                .-..++++++..+|+++=.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe
Confidence            47999995 9999999998864 4788654 45533221                1134566777777777644

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.18  E-value=0.031  Score=43.74  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|- +.||+++|++|..-|++|+..+|+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999984 5699999999999999999999864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.091  Score=40.06  Aligned_cols=59  Identities=25%  Similarity=0.309  Sum_probs=43.0

Q ss_pred             ccCCCEEEEEc-CChHHHHHHHHHccCCC--EEEEEcCCCCCC------------C---cccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASH------------S---QVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~~~~~------------~---~~~~l~ell~~sD~v~l~  208 (226)
                      ...+|+|.|.| .|-||+.+++.|..-|.  +|+.++|++...            .   ..+++.+.+..+|++..+
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~   87 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCC   87 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccc
Confidence            35678999996 89999999999975564  899999975442            1   233455666777776654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.12  E-value=0.031  Score=41.39  Aligned_cols=54  Identities=11%  Similarity=0.113  Sum_probs=38.3

Q ss_pred             EEEEEcCChHHHHHHHHHccC-CCEEEEE-cCCCCCC------C-------cccChhhhccc--CcEEEEe
Q 027226          155 TVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASH------S-------QVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af-G~~V~~~-~r~~~~~------~-------~~~~l~ell~~--sD~v~l~  208 (226)
                      ++||||+|.+|+..++.++.. +++|.++ |++....      .       -..++++++..  .|++.+.
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeec
Confidence            799999999999999999866 7888864 6643211      0       14678888754  4566654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=93.01  E-value=0.028  Score=41.83  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             EEEEEcCChHHHHHHHHHc----cCCCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLR----PFGVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~----afG~~V~~~~r~  185 (226)
                      +|||=|||+|||.+.|.+-    .-.++|.+.+-.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            6999999999999999874    235678877753

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.047  Score=42.67  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       151 l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.||++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999874 599999999999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.92  E-value=0.041  Score=40.23  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|.|.+|...+..++.+|+ +|++.+++..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            37899999999999999999999997 6777877643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.88  E-value=0.048  Score=37.26  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             CCEEEEEcCChHHHHHHHHH---ccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRL---RPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l---~afG~~V~~~~r~~~~  188 (226)
                      .+++.|||-|.||-++|..+   +.+|.+|..+.+.++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            38999999999999999764   4569999999886543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.76  E-value=0.31  Score=37.38  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCC-----CC-
Q 027226          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW-----AS-  188 (226)
Q Consensus       116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~-----~~-  188 (226)
                      +|--+++.+|+..|-.                +..|++.++.++|.|.-|-.+|+.+...|. +++.+|+..     +. 
T Consensus         5 TaaV~LAgll~a~~~~----------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~   68 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT----------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPE   68 (222)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGG
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCccc
Confidence            5556777777777642                568999999999999999999999998888 699999862     11 


Q ss_pred             -C---------------CcccChhhhcccCcEEEEeccCCcccc
Q 027226          189 -H---------------SQVSCQSSGWHCKQVISIFNEKGFSSG  216 (226)
Q Consensus       189 -~---------------~~~~~l~ell~~sD~v~l~~~~d~i~~  216 (226)
                       .               ....++.+.+..++++....+.+++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~~~~~~~~  112 (222)
T d1vl6a1          69 TCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP  112 (222)
T ss_dssp             GCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSCSSCSCH
T ss_pred             ccccHHHHHHHhhhcchhhhcchHhhccCcceeccccccccccH
Confidence             0               113567778888888888877666643

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.71  E-value=0.049  Score=40.18  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=25.3

Q ss_pred             EEEEEcCChHHHHHHHHHccC-CCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af-G~~V~~~~r  184 (226)
                      +|||=|||+|||.+.|.+-.- .++|.+.+-
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999998643 678888763

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.65  E-value=0.06  Score=38.59  Aligned_cols=32  Identities=13%  Similarity=0.292  Sum_probs=26.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCC--EEEEEcCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRS  185 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~--~V~~~~r~  185 (226)
                      .+|+|+| .|++|+.+|-.+..-|.  ++..+|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3799999 69999999999975554  79999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.52  E-value=0.03  Score=41.44  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=37.1

Q ss_pred             CEEEEEcCChHHHH-HHHHHccCC--CEEEE-EcCCCCCC----------CcccChhhhccc--CcEEEEe
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPFG--VKIIA-TKRSWASH----------SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~afG--~~V~~-~~r~~~~~----------~~~~~l~ell~~--sD~v~l~  208 (226)
                      -++||||+|.+|+. .+..++.++  ++|.+ +|++....          .-+.++++++..  .|++.+.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~   74 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLT   74 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEEC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecc
Confidence            48999999999987 477777654  57775 56653221          125678888865  4555554

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=92.49  E-value=0.061  Score=39.84  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             EEEEEcCChHHHHHHHHHcc-CCCEEEEEcCC
Q 027226          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKRS  185 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~a-fG~~V~~~~r~  185 (226)
                      +|||=|||+|||.+.|.+-. -.++|.+.+-.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            79999999999999998863 36788888753

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.42  E-value=0.17  Score=35.42  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcC----ChHHHHHHHHHccCC-CEEEEEcCCCCCC---CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF----GNIGVELAKRLRPFG-VKIIATKRSWASH---SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~----G~IG~~vA~~l~afG-~~V~~~~r~~~~~---~~~~~l~ell~~sD~v~l~  208 (226)
                      -++-++|.|||.    |..|..+.+.|+..| .+|+.++++.++.   ..+.+|+++=..-|++++.
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~   71 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIV   71 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEEC
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEe
Confidence            456799999996    899999999998765 6999999976543   2467888888888999887

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.41  E-value=0.053  Score=42.39  Aligned_cols=37  Identities=27%  Similarity=0.217  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -..|+|.|||-|-.|-..|..|+..|.+|..+++...
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3458999999999999999999999999999998654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.35  E-value=0.049  Score=42.78  Aligned_cols=37  Identities=27%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       150 ~l~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|+||++.|-|- +.||+++|+.|..-|++|+..+|+.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999975 6899999999999999999999863

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.34  E-value=0.083  Score=40.33  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ..++|.|||.|-.|-.+|..|+..|.+|..++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            468999999999999999999999999999998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.28  E-value=0.092  Score=37.48  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CccCCCEEEEE--cCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIv--G~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +..-++.+.|+  |-|.||-++|..|+.+|.+|..+.+....
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            44557888887  88999999999999999999999987544

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.18  E-value=0.064  Score=40.88  Aligned_cols=36  Identities=14%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|++.|-|- +.||+++|+.|..-|++|+..+|+...
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            578888876 789999999999999999999987554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.15  E-value=0.056  Score=40.19  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             cCCCEEEEE--cCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          151 LLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIv--G~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      -.|+++.|+  |.|.+|+...+.+|.+|++|++..++...
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN   66 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence            347889998  78999999999999999999998776443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.12  E-value=0.062  Score=43.23  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -.|.||++.|-|-+ .||+++|+.|..-|++|+..++...
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            36899999999876 5999999999999999999988643

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.03  E-value=0.077  Score=43.07  Aligned_cols=56  Identities=14%  Similarity=0.060  Sum_probs=43.4

Q ss_pred             CCEEEEEcCChHHHHHHHHHc-cCCC-EEEEEcCCCCCC------------CcccChhhhcccCcEEEEe
Q 027226          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASH------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~-afG~-~V~~~~r~~~~~------------~~~~~l~ell~~sD~v~l~  208 (226)
                      -+++||+|.|..++.-++.+. .|.. +|..|+|+....            ....+.++.+..+|+++..
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEe
Confidence            378999999999999998886 5776 799999975332            1234556778899999887

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.95  E-value=0.14  Score=38.12  Aligned_cols=59  Identities=12%  Similarity=-0.003  Sum_probs=47.5

Q ss_pred             ccCCCEEEEEcC--ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~--G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .|.|.||++||=  -++....+..+..|||++....|..-..                   .-..++++.++.+|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            588999999994  4899999999999999999999843111                   0145678999999998775

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.93  E-value=0.16  Score=36.05  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+|.|||-|.+|-++|..|+. +.+|..+++.+..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            379999999999999999976 6799999876543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.13  Score=37.13  Aligned_cols=58  Identities=19%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             cCCCEEEEEcC--ChHHHHHHHHHccCCCEEEEEcCCCC-CC------------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWA-SH------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~--G~IG~~vA~~l~afG~~V~~~~r~~~-~~------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      |.|++|.+||=  .++-...+..+.-|||++....|..- +.                  .-..++++.++.+|++...
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~   79 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD   79 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheecc
Confidence            67999999994  57999999999999999999888421 11                  0135678899999999775

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.85  E-value=0.22  Score=34.78  Aligned_cols=58  Identities=21%  Similarity=0.222  Sum_probs=45.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCCCcccChhhhcccCcEEEE
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~l~ell~~sD~v~l  207 (226)
                      --+||+|.|+|-|.-+-.-|..|..+--+|+.+-|+.+........+++.....+..+
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~nI~v~   88 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVI   88 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEE
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCCceEEE
Confidence            5679999999999999999999999999999998876554334445566655554444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.85  E-value=0.038  Score=38.47  Aligned_cols=31  Identities=23%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |-+-|+|+|++|+.+++.|++.+.  ...+..+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~i--~vi~~d~   31 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSEV--FVLAEDE   31 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGGE--EEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHcCCCC--EEEEcch
Confidence            457899999999999999987664  4455543

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.83  E-value=0.17  Score=36.28  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=44.0

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC-------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH-------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~~~l~ell~~sD~v~l~  208 (226)
                      |.|++|+++|=   |++....+..+.-||++++.+.+.....             .-..++++.++.+|++...
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            57999999996   5699999999999999976655422111             1234788999999998765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.81  E-value=0.088  Score=39.76  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.|+|.|||-|-.|-.+|..|+.-|.+|..++|..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35789999999999999999999999999999853

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.64  E-value=0.09  Score=37.93  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             CCCEEEEEcC---ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~---G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~ell~~sD~v~l~  208 (226)
                      .|.+|+++|=   +++....+..+..||+++....|..-..     .-..++++.++.+|++...
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeee
Confidence            5899999996   6899999999999999999888753211     2356788999999998876

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.60  E-value=0.23  Score=35.99  Aligned_cols=59  Identities=17%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             ccCCCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|+||.+||=| ++....+..+..||++|....|..-..                   .-..++++.+..+|++..-
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~   79 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTD   79 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeec
Confidence            4789999999975 466777888899999999998842111                   0135678899999998865

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.54  E-value=0.054  Score=40.84  Aligned_cols=29  Identities=31%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             EEEEEcCChHHHHHHHHHc--cC---CCEEEEEc
Q 027226          155 TVFILGFGNIGVELAKRLR--PF---GVKIIATK  183 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~--af---G~~V~~~~  183 (226)
                      +|||=|||+|||.+.|.+-  ++   ..+|.+..
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~In   37 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVV   37 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence            7999999999999999763  22   35666644

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.53  E-value=0.066  Score=38.93  Aligned_cols=38  Identities=18%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      -.|.||.|.|.|.+|...+..++.+|+ +|++.+++...
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            357899999999999999999999997 57777765443

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.22  Score=34.47  Aligned_cols=42  Identities=29%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      +...+||+|.|+|-|.-+-.-|..|..+.-+|+.+-|+.+..
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~   66 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK   66 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccc
Confidence            567889999999999999999999999988999998875443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.30  E-value=0.078  Score=39.02  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      .|.+|.|.|. |.+|+..++.++..|++|++..++++
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~   65 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE   65 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH
Confidence            5899999988 67999999999999999999988643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.22  E-value=0.076  Score=37.05  Aligned_cols=48  Identities=15%  Similarity=0.076  Sum_probs=32.9

Q ss_pred             CEEEEEcCChHHHHHHHHHc-cCCCEEEEE-cCCCCCC---------CcccChhhhccc
Q 027226          154 KTVFILGFGNIGVELAKRLR-PFGVKIIAT-KRSWASH---------SQVSCQSSGWHC  201 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~-afG~~V~~~-~r~~~~~---------~~~~~l~ell~~  201 (226)
                      .+|.|+|+|+.|+++++.+. .-|++++++ |-.++..         +..+.++++...
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~   62 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPG   62 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTT
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhh
Confidence            38999999999999998764 557887764 5444433         234556665543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.90  E-value=0.077  Score=38.88  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +....|.+|.|-| .|.+|....+.+|.+|++|++..++..+
T Consensus        19 g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          19 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             cCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            3445677899998 6999999999999999999999987654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=90.89  E-value=0.13  Score=37.20  Aligned_cols=34  Identities=35%  Similarity=0.389  Sum_probs=24.9

Q ss_pred             CEEEEEcCChHHHH-HHHHHccCC-CEEEEE-cCCCC
Q 027226          154 KTVFILGFGNIGVE-LAKRLRPFG-VKIIAT-KRSWA  187 (226)
Q Consensus       154 ktvgIvG~G~IG~~-vA~~l~afG-~~V~~~-~r~~~  187 (226)
                      -++||||.|.||+. +.+.++.+. .++.++ +|+..
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~   41 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA   41 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence            48999999999986 678887553 466665 66543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.054  Score=45.92  Aligned_cols=36  Identities=31%  Similarity=0.408  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      .|.+.+|.|||+|.+|.++++.|...|. ++..+|..
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            3678899999999999999999998888 68888874

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.23  Score=36.08  Aligned_cols=59  Identities=20%  Similarity=0.129  Sum_probs=43.5

Q ss_pred             ccCCCEEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +|.|+||++||=|+ +-...++.+.-|||++....+..-..                   ....++++.+..+|++..-
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~   79 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITD   79 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeee
Confidence            47899999999763 44566777788999999998853321                   1245678888999888765

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.65  E-value=0.25  Score=34.76  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             CCCEEEEEcC----ChHHHHHHHHHccCCCEEEEEcCCCCCC-----CcccChhhhcccCcEEEEe
Q 027226          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASH-----SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       152 ~gktvgIvG~----G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~l~ell~~sD~v~l~  208 (226)
                      .-|+|.|||.    ++.|..+.+.|+.+|+++..+.+.++..     ..+.++.++=..-|++++.
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~   77 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF   77 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEe
Confidence            4589999997    7899999999999999999998865433     2356777777778888887

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=90.63  E-value=0.17  Score=39.64  Aligned_cols=58  Identities=12%  Similarity=-0.072  Sum_probs=43.2

Q ss_pred             CccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhcccCcEEEEecc
Q 027226          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHCKQVISIFNE  210 (226)
Q Consensus       149 ~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~sD~v~l~~~  210 (226)
                      ....|++|++||+-.    ..++++.-|+++..++|.++.. .....-++++++||++.+..+
T Consensus       118 ~~~~g~kV~vIG~~P----~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~viiTGs  176 (251)
T d2h1qa1         118 NEVKGKKVGVVGHFP----HLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCA  176 (251)
T ss_dssp             TTTTTSEEEEESCCT----THHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETH
T ss_pred             cccCCCEEEEEecch----hHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEEEEec
Confidence            345799999999864    4455666788999999987765 233445789999999998843

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.41  E-value=0.13  Score=39.49  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             CEEEEEcC-ChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |.|.|-|- +.||+++|+.|..-|++|+..+++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            56677775 669999999999999999999987543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.34  E-value=0.16  Score=40.67  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      .|+|.|||.|--|-.+|.+|+.-|.+|+.+.++....
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            5899999999999999999999999999999876554

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.25  Score=39.12  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      |+|.|.| .|-||+.+++.|..-|.+|+++++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            7888886 6889999999999899999999874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.18  E-value=0.099  Score=37.76  Aligned_cols=31  Identities=35%  Similarity=0.359  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEE
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT  182 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~  182 (226)
                      ++++|.|||-|.+|-++|..|+.+|.+|..+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4689999999999999999999998764443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.17  E-value=0.18  Score=37.94  Aligned_cols=34  Identities=15%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             EEEEEcCChHHHHHHHHHc--cCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLR--PFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~--afG~~V~~~~r~~~~  188 (226)
                      +|.|||-|.-|-..|..|.  .+|.+|+.|++.+..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            7999999999999999874  689999999998654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.05  E-value=0.13  Score=37.14  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-ChHHHHHHHHHccCCC-EEEEEcCCCC
Q 027226          152 LGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~-G~IG~~vA~~l~afG~-~V~~~~r~~~  187 (226)
                      .|.+|.|+|. |.+|...+..++++|. +|++.+++.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            4689999995 9999999999999995 8999988643

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.037  Score=48.30  Aligned_cols=50  Identities=18%  Similarity=0.194  Sum_probs=39.5

Q ss_pred             HHHHHHhCCCCCCCCCccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCC
Q 027226          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (226)
Q Consensus       134 ~~~~~~~~~w~~~~~~~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~  185 (226)
                      |+++.+-  |.......|...+|.|+|+|.+|.++|+-|.--|. +++.+|..
T Consensus         8 YdRQlrl--wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1           8 YDRQLRL--WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             THHHHHH--HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             hhHHHHh--hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            4444432  65444578999999999999999999999998887 68888874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.52  E-value=0.16  Score=36.78  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      --.|.||.|+|.|.+|...+..++.+|. +|++.+++...
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            3467899999999999999999998887 69989887543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.098  Score=38.67  Aligned_cols=40  Identities=15%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             CccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       149 ~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      ....+.+|.|.| .|.+|....+.+|.+|++|++..++++.
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            344556777775 4999999999999999999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.33  E-value=0.15  Score=34.74  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=29.0

Q ss_pred             CCEEEEEcCChHHHHHHHHHccCC---CEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l~afG---~~V~~~~r~~~~  188 (226)
                      .+++.|||-|.||-++|..+.++|   .+|..+.+....
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            379999999999999997776665   569888876443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.25  E-value=0.24  Score=39.59  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             CEEEEEcCChHHHHHHHHHcc--CCCEEEEEcCCCCC
Q 027226          154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWAS  188 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~a--fG~~V~~~~r~~~~  188 (226)
                      |+|.|||.|.-|-.+|..|+.  .+.+|+.+.++...
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            799999999999999988854  55799999997543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.25  E-value=0.37  Score=35.64  Aligned_cols=37  Identities=30%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccCCC--EEEEEcCCCCCC
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASH  189 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~~  189 (226)
                      -|+|.|.|. |-||+.+++.|..-|-  +|+...|++...
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~   41 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE   41 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh
Confidence            389999988 9999999999987775  788887765443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.38  Score=33.19  Aligned_cols=41  Identities=24%  Similarity=0.189  Sum_probs=36.9

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +...+||+|.|+|-|..+-.-|..|..+.-+|+.+-|+.+-
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            45568999999999999999999999999999999987654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.99  E-value=0.12  Score=37.79  Aligned_cols=30  Identities=17%  Similarity=0.363  Sum_probs=23.4

Q ss_pred             EEEEEcCChHHHHHHHHHc----cCCCEEEEEcC
Q 027226          155 TVFILGFGNIGVELAKRLR----PFGVKIIATKR  184 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~----afG~~V~~~~r  184 (226)
                      .|+|+|+|.+|+.+++.+.    .+..+|.+...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~   39 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAE   39 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEEC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEE
Confidence            6899999999999999886    34456666543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=88.98  E-value=0.16  Score=40.79  Aligned_cols=58  Identities=17%  Similarity=0.165  Sum_probs=43.3

Q ss_pred             cCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-----------------------CcccChhhhcccCcEEE
Q 027226          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-----------------------SQVSCQSSGWHCKQVIS  206 (226)
Q Consensus       151 l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------------------~~~~~l~ell~~sD~v~  206 (226)
                      -.||+|.|.| .|-||+.+++.|...|.+|++..|+....                       .+...+++++..+|.+.
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            3599999997 46799999999988899999987642110                       13445677888888776


Q ss_pred             Ee
Q 027226          207 IF  208 (226)
Q Consensus       207 l~  208 (226)
                      .+
T Consensus        89 ~~   90 (342)
T d1y1pa1          89 HI   90 (342)
T ss_dssp             EC
T ss_pred             hh
Confidence            55

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.90  E-value=0.15  Score=39.55  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=27.0

Q ss_pred             CEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |++.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            344565654 599999999999999999999964

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.14  Score=37.56  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +++.|.|||-|..|-..|..++.+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            56789999999999999999999999999998643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.19  Score=40.75  Aligned_cols=33  Identities=33%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |.|.|.| .|-||+.+++.|...|.+|++++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6788888 99999999999999999999999853

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.80  E-value=0.16  Score=38.59  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +|.|||-|-.|-..|.+|+..|.+|+.+.++...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            5899999999999999999999999999986543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=0.2  Score=37.22  Aligned_cols=30  Identities=20%  Similarity=0.277  Sum_probs=28.4

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      |.|||-|..|...|.+++.+|.+|..+.+.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999874

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.53  E-value=0.24  Score=39.00  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |+|.|.| .|-||+.+++.|..-|.+|++++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            6888886 588999999999888999999998653

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.46  E-value=0.34  Score=38.88  Aligned_cols=37  Identities=27%  Similarity=0.277  Sum_probs=32.2

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      .+.+|.|.| .|-||+.+++.|..-|.+|+++|+....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            567899987 8999999999999999999999876544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.16  Score=39.84  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=31.3

Q ss_pred             CCCEEEEE--cCChHHHHHHHHHcc-CCCEEEEEcCCCC
Q 027226          152 LGKTVFIL--GFGNIGVELAKRLRP-FGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIv--G~G~IG~~vA~~l~a-fG~~V~~~~r~~~  187 (226)
                      +||+|.||  |-+.||+++|+.|.. .|.+|+..+|+..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999999  888999999999865 5999999999743

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.04  E-value=0.23  Score=37.07  Aligned_cols=40  Identities=15%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CCccCCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       148 ~~~l~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ...+.||+|.|||.|.-|-.+|.-+..-+.++....|++.
T Consensus        27 ~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          27 PVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            3578999999999999999999999888888777766543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.01  E-value=0.21  Score=36.57  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |.|||-|..|-.+|.+|...|.+|+.+.++...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            899999999999999999999999999997543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.86  E-value=0.28  Score=37.61  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +.++|.|||-|--|-..|..|+..|.+|..+..+...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            3467999999999999999999999999999876544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.3  Score=34.08  Aligned_cols=36  Identities=33%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             CCEEEEEcCChHHHHHHHHH----ccCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGFGNIGVELAKRL----RPFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~G~IG~~vA~~l----~afG~~V~~~~r~~~~  188 (226)
                      ++++.|||-|-||-++|.-+    +.+|.+|+.+.+....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            57999999999999988766    5789999999886543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.71  E-value=0.18  Score=37.21  Aligned_cols=41  Identities=24%  Similarity=0.235  Sum_probs=36.2

Q ss_pred             CCccCCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       148 ~~~l~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      +....|.+|.|.| -|.+|....+.++.+|++|++..++.++
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            4556789999999 6999999999999999999999887655

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.45  E-value=0.19  Score=37.37  Aligned_cols=32  Identities=28%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      |.|||-|..|...|..++.+|++|..+++...
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999987643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.37  E-value=0.21  Score=38.67  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CccCCCEEEEEcCC-hHHHHHHHHHcc---CCCEEEEEcCCC
Q 027226          149 ETLLGKTVFILGFG-NIGVELAKRLRP---FGVKIIATKRSW  186 (226)
Q Consensus       149 ~~l~gktvgIvG~G-~IG~~vA~~l~a---fG~~V~~~~r~~  186 (226)
                      ..|.||++.|-|-+ .||+++|+.|..   =|++|+..+|+.
T Consensus         2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            35889988888875 699999999864   589999999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.32  E-value=0.27  Score=38.04  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=29.1

Q ss_pred             CCEEEEEcCC-hHHHHHHHHHccCCCEEEEEcCCC
Q 027226          153 GKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG~G-~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      ||.+.|-|-+ .||+++|+.|..-|++|+..+|+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6777777765 599999999999999999999873

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.05  E-value=0.3  Score=37.14  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      +.+|.|.| -|.||+++|+.|..-|++|+..+|...+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~   39 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ   39 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc
Confidence            34676775 57899999999999999999999986553

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=0.43  Score=35.07  Aligned_cols=59  Identities=12%  Similarity=0.033  Sum_probs=46.8

Q ss_pred             ccCCCEEEEEcCC--hHHHHHHHHHccCCCEEEEEcCCCCCC-------------------CcccChhhhcccCcEEEEe
Q 027226          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASH-------------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G--~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~~l~ell~~sD~v~l~  208 (226)
                      .+.|.+|+++|=|  ++....+..+.-|||+|....|..-..                   .-..++++.+..+|++...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999965  688999999999999999998842111                   0145678899999998765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.84  E-value=0.22  Score=36.65  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      +|.|||-|--|-..|..|+..|. +|+.+.++...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   36 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            48999999999999999999998 59999987543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.62  E-value=0.35  Score=35.40  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=28.1

Q ss_pred             EEEEEcCChHHHHHHHHHccC--CCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPF--GVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~af--G~~V~~~~r~~~  187 (226)
                      +|.|||-|.+|-++|..|+.+  +.+|+.++|...
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~   36 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence            699999999999999999866  568998887543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.21  Score=35.55  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.7

Q ss_pred             ccCCCEEEEEcCChHHHHHHHHHccCCCEE
Q 027226          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKI  179 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG~~vA~~l~afG~~V  179 (226)
                      .-.||+|.|||-|.+|-.+|+.+..+|+++
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            345899999999999999999999999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.55  E-value=0.22  Score=38.66  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .|.|||.|-.|-.+|..|+..|.+|..+++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.27  E-value=0.23  Score=38.27  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCC-EEEEEcCCC
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSW  186 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~-~V~~~~r~~  186 (226)
                      ++|+.|.| .|.||+++|+.|..-|. +|+.++|+.
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            36999998 68899999999999998 577788764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=86.26  E-value=0.22  Score=36.50  Aligned_cols=55  Identities=9%  Similarity=-0.014  Sum_probs=39.1

Q ss_pred             CEEEEEcCChHHHHHH---HHHc--cC-CCEEEEEcCCCCCC--------------------CcccChhhhcccCcEEEE
Q 027226          154 KTVFILGFGNIGVELA---KRLR--PF-GVKIIATKRSWASH--------------------SQVSCQSSGWHCKQVISI  207 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA---~~l~--af-G~~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v~l  207 (226)
                      -+|+|||.|++|...+   ..++  .| +-++..+|..++..                    ....+.++.++.+|+++.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~   82 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN   82 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEee
Confidence            4899999999997632   2333  44 35999999974321                    123567888999999987


Q ss_pred             e
Q 027226          208 F  208 (226)
Q Consensus       208 ~  208 (226)
                      -
T Consensus        83 ~   83 (171)
T d1obba1          83 T   83 (171)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.11  E-value=0.38  Score=36.43  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.9

Q ss_pred             EEEEEcCChHHHHHHHHHccCCC-EEEEEcCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~-~V~~~~r~~~~  188 (226)
                      +|.|||-|--|-.+|..|+..|. +|..+.+++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            69999999999999999999997 89999997654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.96  E-value=0.87  Score=32.37  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=30.2

Q ss_pred             cCCCEEEEEcCChHHHHHHHHHccCCCE-EEEEcCCCC
Q 027226          151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (226)
Q Consensus       151 l~gktvgIvG~G~IG~~vA~~l~afG~~-V~~~~r~~~  187 (226)
                      -.+++|.|||=|.+|-.+|..+..+|++ |+.+.|+..
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            3467899999999999999999999985 766666543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.90  E-value=0.41  Score=33.64  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=23.7

Q ss_pred             EEEEEc-CChHHHHHHHHHc-cCCCEEE-EEcC
Q 027226          155 TVFILG-FGNIGVELAKRLR-PFGVKII-ATKR  184 (226)
Q Consensus       155 tvgIvG-~G~IG~~vA~~l~-afG~~V~-~~~r  184 (226)
                      +|+|+| .|+.|+++++.+. .=++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 6999999999864 6678855 4554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.76  E-value=0.32  Score=36.21  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=30.1

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -|.|||-|..|-..|..+...|++|..+++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            478999999999999999999999999997654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.62  E-value=0.32  Score=38.66  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      ....|.|||.|..|-.+|..|+..|.+|..+++...
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            456799999999999999999999999999998654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=85.28  E-value=0.12  Score=39.85  Aligned_cols=59  Identities=14%  Similarity=0.047  Sum_probs=35.9

Q ss_pred             ccCCCEEEEEcCChHH----HHHHHHHccC--CCEEEE-EcCCCCCC------------CcccChhhhcccCc--EEEEe
Q 027226          150 TLLGKTVFILGFGNIG----VELAKRLRPF--GVKIIA-TKRSWASH------------SQVSCQSSGWHCKQ--VISIF  208 (226)
Q Consensus       150 ~l~gktvgIvG~G~IG----~~vA~~l~af--G~~V~~-~~r~~~~~------------~~~~~l~ell~~sD--~v~l~  208 (226)
                      .-+--+|||||+|.+|    +.-...++.+  +++|.+ +|++....            ..+.++++++...|  +|.+.
T Consensus        13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~   92 (237)
T d2nvwa1          13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVS   92 (237)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEEC
T ss_pred             CCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeecc
Confidence            3444689999999854    4444445433  688885 66654221            12568899987655  44444

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.10  E-value=0.24  Score=36.38  Aligned_cols=35  Identities=14%  Similarity=0.017  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      +.++|.|||-|..|-..|..|.-+|++|+.+++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            56899999999999999999999999999998654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.03  E-value=0.38  Score=38.17  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=27.8

Q ss_pred             CEE-EEE-cCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          154 KTV-FIL-GFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       154 ktv-gIv-G~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      |+| .|. |.|-||+.+++.|..-|.+|++++|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            456 565 467899999999998999999999964

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=0.45  Score=34.04  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=28.2

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      |.|||-|.+|-..|-.+..+|++|+.+++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999874

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.99  E-value=0.48  Score=35.39  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~  187 (226)
                      -|.|||-|..|...|..++.+|++|..++..+.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            478999999999999999999999999997543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.71  E-value=0.49  Score=36.18  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=29.8

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHc---cCCCEEEEEcCCCCC
Q 027226          153 GKTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWAS  188 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~---afG~~V~~~~r~~~~  188 (226)
                      -|||.|-|- +.||+++|+.|.   .-|.+|+..+|+...
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~   41 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   41 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            489988887 679999999884   568999999997654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=0.83  Score=32.35  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=33.7

Q ss_pred             CEEEEEcC-ChHHHHHHHHHc---cC-CCEEEEEcCCCCCC--C-------cc-cChh-hhcccCcEEEEe
Q 027226          154 KTVFILGF-GNIGVELAKRLR---PF-GVKIIATKRSWASH--S-------QV-SCQS-SGWHCKQVISIF  208 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~---af-G~~V~~~~r~~~~~--~-------~~-~~l~-ell~~sD~v~l~  208 (226)
                      |+|||||. |-+|+++.++|.   .| -.++..+..+....  .       .. ...+ +.++..|++.+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a   72 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTC   72 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEEC
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEe
Confidence            58999997 999999997652   33 34666665543332  0       01 1112 346778877776

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=84.33  E-value=0.46  Score=37.11  Aligned_cols=56  Identities=14%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             CCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCCCCC-CcccChhhhccc--CcEEEEe
Q 027226          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSGWHC--KQVISIF  208 (226)
Q Consensus       153 gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-~~~~~l~ell~~--sD~v~l~  208 (226)
                      .|+|.|.| .|-||+.+++.|..-|..|++.+.+.+-. .....++++++.  .|.+..+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~   61 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA   61 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEc
Confidence            47888886 69999999999999999999887765443 334456666654  3555433

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.89  E-value=0.36  Score=35.92  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CEEEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       154 ktvgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      .-|.|||-|..|...|..++.+|.+|..+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            45889999999999999999999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.84  E-value=0.5  Score=37.23  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCCCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~~  189 (226)
                      .+.|||.|-.|-.+|++|+..|.+|..+.++....
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            57899999999999999999999999999876554

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.45  Score=35.17  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      |.|||-|..|-..|..++.+|.+|..+++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.57  E-value=0.27  Score=35.14  Aligned_cols=55  Identities=15%  Similarity=0.186  Sum_probs=38.5

Q ss_pred             CEEEEEc-CChHHHHHHHHHcc---CC----CEEEEEcCCCCCC--------------------CcccChhhhcccCcEE
Q 027226          154 KTVFILG-FGNIGVELAKRLRP---FG----VKIIATKRSWASH--------------------SQVSCQSSGWHCKQVI  205 (226)
Q Consensus       154 ktvgIvG-~G~IG~~vA~~l~a---fG----~~V~~~~r~~~~~--------------------~~~~~l~ell~~sD~v  205 (226)
                      -+|.|+| .|++|+.+|-.|..   ||    ..+..+|......                    ....+..+.++.+|++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999 59999999998853   33    2466666543221                    1234556788999999


Q ss_pred             EEe
Q 027226          206 SIF  208 (226)
Q Consensus       206 ~l~  208 (226)
                      ++.
T Consensus        84 Vit   86 (154)
T d5mdha1          84 ILV   86 (154)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            887

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=1.4  Score=33.32  Aligned_cols=68  Identities=9%  Similarity=0.121  Sum_probs=46.9

Q ss_pred             CccCCCEEEEE-----------------cCChHHHHHHHHHccCCCEEEEEcCCCCCC-------C---cc----cChhh
Q 027226          149 ETLLGKTVFIL-----------------GFGNIGVELAKRLRPFGVKIIATKRSWASH-------S---QV----SCQSS  197 (226)
Q Consensus       149 ~~l~gktvgIv-----------------G~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~---~~----~~l~e  197 (226)
                      .+|.|++|.|-                 --|..|.++|+-+..+|++|..+.-.....       .   ..    ..+.+
T Consensus         2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~   81 (223)
T d1u7za_           2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNA   81 (223)
T ss_dssp             CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHh
Confidence            35777777776                 469999999999999999999987643322       0   11    22334


Q ss_pred             hcccCcEEEEe-ccCCcccc
Q 027226          198 GWHCKQVISIF-NEKGFSSG  216 (226)
Q Consensus       198 ll~~sD~v~l~-~~~d~i~~  216 (226)
                      .++.+|++... +-+||--.
T Consensus        82 ~~~~~D~~i~aAAvsDf~~~  101 (223)
T d1u7za_          82 SVQQQNIFIGCAAVADYRAA  101 (223)
T ss_dssp             HGGGCSEEEECCBCCSEEES
T ss_pred             hhccceeEeeeechhhhhhh
Confidence            56788876665 77777543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.40  E-value=0.64  Score=36.85  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      .-|++.|.| .|-||+.+++.|...|.+|+++|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            347888875 79999999999999999999998743

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=83.28  E-value=1.4  Score=31.32  Aligned_cols=58  Identities=16%  Similarity=0.037  Sum_probs=43.6

Q ss_pred             cCCCEEEEEcC---ChHHHHHHHHHccCCCE-EEEEcCCCCCC---------------CcccChhhhcccCcEEEEe
Q 027226          151 LLGKTVFILGF---GNIGVELAKRLRPFGVK-IIATKRSWASH---------------SQVSCQSSGWHCKQVISIF  208 (226)
Q Consensus       151 l~gktvgIvG~---G~IG~~vA~~l~afG~~-V~~~~r~~~~~---------------~~~~~l~ell~~sD~v~l~  208 (226)
                      +.|.+|+++|=   |++....+..+..||+. ++...+..-..               ....++++.+..+|++...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~   78 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT   78 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEEC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEee
Confidence            67999999995   77999999999999754 55655532211               1246788999999998865

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.10  E-value=0.52  Score=35.41  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             EEEEcCChHHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       156 vgIvG~G~IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |.|||-|..|-..|..|+..|++|+.+++....
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            789999999999999999999999999987544

>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Flavodoxin
species: Chondrus crispus [TaxId: 2769]

Probab=82.79  E-value=0.33  Score=35.58  Aligned_cols=37  Identities=19%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CccCCCEEEEEcCCh----------HHHHHHHHHccCCCEEEEEcCC
Q 027226          149 ETLLGKTVFILGFGN----------IGVELAKRLRPFGVKIIATKRS  185 (226)
Q Consensus       149 ~~l~gktvgIvG~G~----------IG~~vA~~l~afG~~V~~~~r~  185 (226)
                      ..++|++++|+|+|.          .++.+.++++..|++++|..+.
T Consensus        80 ~~l~gk~~avFGlGD~~~y~~~F~~a~~~l~~~l~~~GA~~IG~~~~  126 (173)
T d2fcra_          80 VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNP  126 (173)
T ss_dssp             CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCG
T ss_pred             CCCCCCeEEEEEecCCCcchhhHHHHHHHHHHHHHhCCCEEecccCC
Confidence            579999999999873          5899999999999999987543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=82.75  E-value=0.5  Score=36.02  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             EEEEEcCChHHHHHHHHHccCCCEEEEEcCCC
Q 027226          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (226)
Q Consensus       155 tvgIvG~G~IG~~vA~~l~afG~~V~~~~r~~  186 (226)
                      -|.|||-|-+|..+|..|..-|.+|+.+++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999854

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.66  E-value=0.17  Score=37.28  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             CCCEEEEEc-CChHHHHHHHHHccCCCE-EEEEcCC
Q 027226          152 LGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRS  185 (226)
Q Consensus       152 ~gktvgIvG-~G~IG~~vA~~l~afG~~-V~~~~r~  185 (226)
                      .+++|.|.| .|.+|+..++.+|.+|++ |++.+.+
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~   65 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT   65 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccch
Confidence            458999999 599999999999999996 5555554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.42  E-value=0.14  Score=39.74  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEEEcCCh-HHHHHHHHHccCCCEEEEEcCCCCC
Q 027226          155 TVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (226)
Q Consensus       155 tvgIvG~G~-IG~~vA~~l~afG~~V~~~~r~~~~  188 (226)
                      |+.|-|-++ ||+++|++|..-|++|+..+|+.+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~   36 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQ   36 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            566777665 9999999999999999999987544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.68  E-value=1.4  Score=30.79  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=23.4

Q ss_pred             CEEEEEcC-ChHHHHHHHHHc--cC-CCEEEEEcC
Q 027226          154 KTVFILGF-GNIGVELAKRLR--PF-GVKIIATKR  184 (226)
Q Consensus       154 ktvgIvG~-G~IG~~vA~~l~--af-G~~V~~~~r  184 (226)
                      -+|||+|. |-+|+++.+.|.  .| ..++..+..
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s   37 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS   37 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence            47999986 999999999994  33 346665543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.50  E-value=0.9  Score=32.25  Aligned_cols=32  Identities=31%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             CCEEEEEcC-ChHHHHHHHHHccC---CCEEEEEcC
Q 027226          153 GKTVFILGF-GNIGVELAKRLRPF---GVKIIATKR  184 (226)
Q Consensus       153 gktvgIvG~-G~IG~~vA~~l~af---G~~V~~~~r  184 (226)
                      |-+|||+|. |-+|+++.++|...   -.++..++.
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s   36 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS   36 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence            568999998 99999999999644   345555543