Citrus Sinensis ID: 027241

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Secondary Structure (PSIPRED)
cccccccccEEcccccccccHHHHHcccccccccccEEEEEcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEccccEEEEEEccccccccccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccEcccccEEEEEcccccccEEEEccEEEEcccccccEEEEEEEccHccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MDLATETakyvfpkrfesqNLEEALMavpdletvKFKVLSRRGQYEIREVESYFIAettmpgrtgfdlngasrSFNVLAEYLfgkntkretmemttpvitrktqsdgekmemttPVISKkledqdkwqmsfvmpskyganlplpkdpsvrikevpKKVVAVVAFSgfvtdedvKRRELKLRDALkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Flexible Loop (DISEMBL)
mdlatetakyvfpkrfesqnleealmavpdletvkfkvlsrrgqyeirEVESYFIAETTMPGRTGFDLNGASRSFNVLAEYlfgkntkretmemttpvitrktqsdgekmeMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVafsgfvtdedvkrrelklrdalkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Low Complexity Region (SEG)
MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEvpkkvvavvaFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered region (IsUnstruct)
*********YVFPKRFE*QNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK*********************************************FV****************VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG*RQFRVKEGASVEVAQYNPPFTLPFTR*************
Disordered Region (DISOPRED)
*******AKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRT*FDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS***************LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK**
Disordered Region (DISEMBL)
MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered Region (DISPRO)
MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9SR77	309	Heme-binding-like protein	yes	no	0.995	0.728	0.734	1e-91
Q5ISC6	189	Heme-binding protein 1 OS	yes	no	0.747	0.894	0.288	1e-08
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.544	0.647	0.264	2e-08
Q6DJ66	190	Heme-binding protein 1 OS	yes	no	0.544	0.647	0.257	5e-08
Q5ZMB2	189	Heme-binding protein 1 OS	yes	no	0.738	0.883	0.281	8e-08
Q9NRV9	189	Heme-binding protein 1 OS	yes	no	0.5	0.597	0.311	1e-07
Q9R257	190	Heme-binding protein 1 OS	yes	no	0.504	0.6	0.303	1e-06
Q148C9	191	Heme-binding protein 1 OS	no	no	0.553	0.654	0.260	0.0006
Q9Y5Z4	205	Heme-binding protein 2 OS	no	no	0.699	0.770	0.275	0.0006

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 166/226 (73%), Positives = 200/226 (88%), Gaps = 1/226 (0%)

Query: 2   DLATETAKYVFPKRFESQ-NLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           DLA ETAKYVFPKRF+S  NLEEA M+VPDLET+ F+VL R  +YEIR+VE YF+AET M
Sbjct: 84  DLAMETAKYVFPKRFDSSTNLEEAFMSVPDLETMNFRVLFRTDKYEIRQVEPYFVAETIM 143

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PG TGFD  GAS+SFNVLAEYLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+ K
Sbjct: 144 PGETGFDSYGASKSFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSK 203

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
            +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++VP+K+VAVVAFSG+VTDE+++RRE +L
Sbjct: 204 AKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERREREL 263

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 226
           R AL+ D++FRV++G S EVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct: 264 RRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVENKED 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 25/194 (12%)

Query: 31  LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 85
           +ET  ++VLS+  +    YE R  E    A   M   T   ++ A R +   + +Y+ G 
Sbjct: 13  VETWPWQVLSKGDKQDISYEERACEGGKFATVEM---TDKPVDEALREAMPKVMKYVGGS 69

Query: 86  NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
           N K   M MT P+      SDG  +             Q K ++ F +P+++ +N P+P 
Sbjct: 70  NDKGIGMGMTVPISFAVFPSDGGSL-------------QKKLKVWFRIPNEFQSNPPVPS 116

Query: 146 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
           D S++I+E     V  + F G+  + D   R  +LR AL+G    R           Y+P
Sbjct: 117 DDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSD---VYFCTGYDP 173

Query: 206 PFTLPFTRRNEIAL 219
           P   P+ RRNE+ L
Sbjct: 174 PMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)

Query: 78  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 137
           L +Y+ G N K   M MT+PVI     S+ + ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNNKSAGMGMTSPVIINSYPSENDTLQPNVKVLLR-------------IPSQY 108

Query: 138 GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 197
            A+ P+P D +++I++     +    F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDNTIQIEDRESVTLYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHSD---Y 165

Query: 198 VEVAQYNPPFTLPFTRRNEI 217
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 78  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 137
           L +Y+ G N K   M MT+PV+     ++ E ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNQKYAGMGMTSPVVITSYPAENETLQPNVKVLLR-------------IPSQY 108

Query: 138 GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 197
            A+ P+P D ++ I++          F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDDTIHIEDRESVTFYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHTDH--- 165

Query: 198 VEVAQYNPPFTLPFTRRNEI 217
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 25/192 (13%)

Query: 31  LETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 86
           +ET  ++VLS+    +  YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct: 13  VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query: 87  TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
            K   M MT PV IT     DG                Q K ++   +P+++ A+ P P 
Sbjct: 71  DKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query: 146 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
           D S++I+E     +    F G+  + D      KL+ AL  +  +R           Y+P
Sbjct: 117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYRKD---FYFCNGYDP 173

Query: 206 PFTLPFTRRNEI 217
           P   P+ RRNE+
Sbjct: 174 PMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 103 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 157
           T   G  M MT P+      ++D     K ++ F +P+++ ++ P P D SV+I+E    
Sbjct: 69  TNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSVKIEEREGI 128

Query: 158 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
            V  + F G+  + D   +  +LR AL+G   +R   G       Y+PP   P+ RRNEI
Sbjct: 129 TVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYDPPMK-PYGRRNEI 184

Query: 218 AL 219
            L
Sbjct: 185 WL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 103 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 157
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 69  TNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 128

Query: 158 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
            V    F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 129 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 185

Query: 218 AL 219
            L
Sbjct: 186 WL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

>sp|Q148C9|HEBP1_BOVIN Heme-binding protein 1 OS=Bos taurus GN=HEBP1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 78  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 137
           + +Y+ G N K   M MT P+      SD   +             Q K ++ F +P+K+
Sbjct: 62  VMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDL-------------QKKLKVWFRIPNKF 108

Query: 138 GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 197
            ++ P P D S++I++     V    F G+    D   +  +LR AL+   +++      
Sbjct: 109 QSDPPAPSDDSIKIEDREGITVYSTQFGGYAKAADYAAQAAQLRSALESTAKYQTD---F 165

Query: 198 VEVAQYNPPFTLPFTRRNEIAL 219
                Y+PP   P+ RRNE+ L
Sbjct: 166 YFCTGYDPPMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Bos taurus (taxid: 9913)

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 20/178 (11%)

Query: 43  GQYEIREVESYFIAETTMPGRTGFDLNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 101
           G YEIR    Y  A+         D + A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 36  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 92

Query: 102 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAV 161
                G   E T               +S  +PS+   + P P +  V I++  +  V V
Sbjct: 93  VEPGSGPFSESTI-------------TISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 139

Query: 162 VAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 219
            +F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 140 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
225440878	285	PREDICTED: heme-binding-like protein At3	0.995	0.789	0.826	1e-107
297740118	252	unnamed protein product [Vitis vinifera]	0.995	0.892	0.826	1e-107
147794498	252	hypothetical protein VITISV_021815 [Viti	0.995	0.892	0.822	1e-106
255575711	297	protein with unknown function [Ricinus c	0.995	0.757	0.866	1e-104
356572562	303	PREDICTED: heme-binding-like protein At3	0.986	0.735	0.811	1e-104
356503813	304	PREDICTED: heme-binding-like protein At3	0.986	0.733	0.772	2e-98
297829544	317	soul heme-binding family protein [Arabid	0.995	0.709	0.751	4e-98
357511075	296	Heme-binding-like protein [Medicago trun	0.986	0.753	0.766	1e-97
449462962	305	PREDICTED: heme-binding-like protein At3	0.995	0.737	0.733	2e-96
242061832	296	hypothetical protein SORBIDRAFT_04g02173	0.991	0.756	0.72	2e-91

>gi|225440878|ref|XP_002282544.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/225 (82%), Positives = 208/225 (92%)

Query: 1   MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           MDLA+ET KY FP+RFES NLEEALM+VPDLETVKFKVLSR+ QYEIREVE YFIAETTM
Sbjct: 60  MDLASETTKYAFPRRFESSNLEEALMSVPDLETVKFKVLSRKDQYEIREVEPYFIAETTM 119

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PG+ GFD NG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+KK
Sbjct: 120 PGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITKK 179

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
           L+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE KL
Sbjct: 180 LQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESKL 239

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 225
           R AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRRNE+ALEVERK+
Sbjct: 240 RSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRRNEVALEVERKQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740118|emb|CBI30300.3| unnamed protein product [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/225 (82%), Positives = 208/225 (92%)

Query: 1   MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           MDLA+ET KY FP+RFES NLEEALM+VPDLETVKFKVLSR+ QYEIREVE YFIAETTM
Sbjct: 27  MDLASETTKYAFPRRFESSNLEEALMSVPDLETVKFKVLSRKDQYEIREVEPYFIAETTM 86

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PG+ GFD NG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+KK
Sbjct: 87  PGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITKK 146

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
           L+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE KL
Sbjct: 147 LQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESKL 206

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 225
           R AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRRNE+ALEVERK+
Sbjct: 207 RSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRRNEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794498|emb|CAN62765.1| hypothetical protein VITISV_021815 [Vitis vinifera]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 206/225 (91%)

Query: 1   MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           MDLA+ET KY FP+RFES NLEEALM+VPDLETVKFKVLSR+ QYEIREVE YFIAETTM
Sbjct: 27  MDLASETXKYAFPRRFESSNLEEALMSVPDLETVKFKVLSRKDQYEIREVEPYFIAETTM 86

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PG+ GFD NG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG KMEMTTPVI+KK
Sbjct: 87  PGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGXKMEMTTPVITKK 146

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
           L+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE KL
Sbjct: 147 LQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESKL 206

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 225
           R AL+ D+QF+VKEGA VEVAQYNPPFTLPF RRNE+ALEVERK+
Sbjct: 207 RSALRNDKQFQVKEGAPVEVAQYNPPFTLPFARRNEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575711|ref|XP_002528755.1| protein with unknown function [Ricinus communis] gi|223531849|gb|EEF33667.1| protein with unknown function [Ricinus communis]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 212/225 (94%)

Query: 2   DLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMP 61
           DLA ETAKYVFPKRF S+NLEEALMAVPDLETV++KVLSRR QYEIREVE YFIAETTMP
Sbjct: 73  DLANETAKYVFPKRFASRNLEEALMAVPDLETVEYKVLSRRDQYEIREVEPYFIAETTMP 132

Query: 62  GRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKL 121
           G+TGFDLNGAS+SFNVLAEYLFGKN  +E MEMTTPV TRK QSDGEKMEMTTPVI+KK+
Sbjct: 133 GKTGFDLNGASQSFNVLAEYLFGKNVTKEKMEMTTPVFTRKVQSDGEKMEMTTPVITKKV 192

Query: 122 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR 181
           EDQDKWQMSFVMPSKYGA+LPLPKD +V+IKEVPKKVVAVVAFSGFVTDEDVK+RELKLR
Sbjct: 193 EDQDKWQMSFVMPSKYGADLPLPKDKTVKIKEVPKKVVAVVAFSGFVTDEDVKQRELKLR 252

Query: 182 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 226
           +ALK D  FRVK+GAS+EVAQYNPPFTLPFTRRNEIA+E+ERKEE
Sbjct: 253 NALKNDPLFRVKKGASMEVAQYNPPFTLPFTRRNEIAIEIERKEE 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572562|ref|XP_003554437.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/223 (81%), Positives = 200/223 (89%)

Query: 2   DLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMP 61
           D+A ETAKYVFPKRFES+NLEEALM+VPDLETV FKVLSR  QYEIREVE YF+AETTMP
Sbjct: 79  DVAAETAKYVFPKRFESRNLEEALMSVPDLETVDFKVLSRMDQYEIREVEPYFVAETTMP 138

Query: 62  GRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKL 121
           G++GFD NGASRSFN LAEYLFGKNT +E MEMTTPV T K QSDG KM+MTTPV++ K+
Sbjct: 139 GKSGFDFNGASRSFNALAEYLFGKNTTKEKMEMTTPVFTSKNQSDGVKMDMTTPVLTTKM 198

Query: 122 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR 181
           EDQD W+MSFVMPSKYGANLPLPKD SVRIKEVP+K+VAVV+FSGFV DE++K+RELKLR
Sbjct: 199 EDQDNWKMSFVMPSKYGANLPLPKDSSVRIKEVPRKIVAVVSFSGFVNDEEIKQRELKLR 258

Query: 182 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 224
           DALK D QF +KEG SVEVAQYNPPFTLPF RRNEIALEVE K
Sbjct: 259 DALKSDSQFEIKEGTSVEVAQYNPPFTLPFQRRNEIALEVEWK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503813|ref|XP_003520697.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/224 (77%), Positives = 199/224 (88%), Gaps = 1/224 (0%)

Query: 2   DLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMP 61
           D+A ETAKYVFPKRFE++NLEEALM+VP+LETV+FKVLSRR QYEIREVE YF+AETTMP
Sbjct: 79  DVAAETAKYVFPKRFENRNLEEALMSVPNLETVEFKVLSRRDQYEIREVEPYFVAETTMP 138

Query: 62  GRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKL 121
           G++GFD NGASRSFNVLAEY FGKNT +E MEM TPV T K QSDG KM+MTTPV++ K+
Sbjct: 139 GKSGFDFNGASRSFNVLAEYHFGKNTTKEKMEMNTPVFTSKNQSDGVKMDMTTPVLTTKM 198

Query: 122 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSG-FVTDEDVKRRELKL 180
           EDQD W+MSFVMPSKYGANLPL KD SVRIKEVP+K++ VV+FSG FV DE++K+RELKL
Sbjct: 199 EDQDNWKMSFVMPSKYGANLPLAKDSSVRIKEVPRKIIDVVSFSGVFVNDEEIKQRELKL 258

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 224
           +DALK D QF++KEG SVEVA+YNPPFTLPF  RNEIALEVE K
Sbjct: 259 QDALKSDSQFKIKEGTSVEVARYNPPFTLPFQCRNEIALEVEWK 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829544|ref|XP_002882654.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297328494|gb|EFH58913.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 202/225 (89%)

Query: 2   DLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMP 61
           DLA ETAKYVFPKRF S NLEEALM+VPDLET++F+V+SR  +YEIR+VE YF+AETTMP
Sbjct: 93  DLAVETAKYVFPKRFNSSNLEEALMSVPDLETMEFRVVSRTDKYEIRQVEPYFVAETTMP 152

Query: 62  GRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKL 121
           G TGFD  GAS+SFNVLAEYLFGKNT++E MEMTTPV+TRK QS GEKMEMTTPVI+ K 
Sbjct: 153 GETGFDFYGASKSFNVLAEYLFGKNTRKEKMEMTTPVVTRKAQSVGEKMEMTTPVITTKA 212

Query: 122 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR 181
           +DQ +W+MSFVMPSKYG+NLPLPKD SV+I EVP+K+VAVVAFSG+VTDE+++RRE +LR
Sbjct: 213 KDQTQWRMSFVMPSKYGSNLPLPKDSSVKILEVPRKIVAVVAFSGYVTDEEIERREQELR 272

Query: 182 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 226
            AL+ D++FRV++G SVEVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct: 273 RALQNDKKFRVRDGVSVEVAQYNPPFTLPFMRRNEVSLEVESKED 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511075|ref|XP_003625826.1| Heme-binding-like protein [Medicago truncatula] gi|355500841|gb|AES82044.1| Heme-binding-like protein [Medicago truncatula]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 196/223 (87%)

Query: 2   DLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTMP 61
           D+ATETAKY+FPKRFES+ LEEALM VPDLETV FKVL+ R QYEIRE+E YF+AETTMP
Sbjct: 72  DVATETAKYLFPKRFESRTLEEALMTVPDLETVNFKVLTIRDQYEIREIEPYFVAETTMP 131

Query: 62  GRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKL 121
           G++GFD  G+S+SFNVLAEYLFGKNTK+E MEMTTPV T K QSDG KM+MTTPV++ K 
Sbjct: 132 GKSGFDFRGSSQSFNVLAEYLFGKNTKKEKMEMTTPVFTTKKQSDGVKMDMTTPVLTTKT 191

Query: 122 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR 181
            D+D+W+MSFVMPSKYGANLPLPKD SV IKEV +K VAVV+FSGFV DE+VKRRELKLR
Sbjct: 192 VDKDEWKMSFVMPSKYGANLPLPKDSSVAIKEVARKTVAVVSFSGFVNDEEVKRRELKLR 251

Query: 182 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 224
           +ALK D QF++KEG S+E+AQYNPPF LPF RRNEIALEVE K
Sbjct: 252 EALKNDGQFKIKEGTSIEIAQYNPPFALPFQRRNEIALEVEWK 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462962|ref|XP_004149204.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus] gi|449500911|ref|XP_004161228.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 165/225 (73%), Positives = 203/225 (90%)

Query: 1   MDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           ++LA+ET+KY+ PKRF+S+NLEEALMAVPDLET+KFKVLSRR +YEIREVE YFIAETTM
Sbjct: 80  LELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSRRDEYEIREVEPYFIAETTM 139

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PG++GFD  GAS+SFNVLA YLFGKN  RE MEMTTPV+T + +SDGEKM+ TTPVI+K 
Sbjct: 140 PGKSGFDFGGASQSFNVLAAYLFGKNKAREKMEMTTPVLTSQYKSDGEKMDTTTPVITKN 199

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
           ++ +D+W+MSFV+PSKYG N P+P+D SVRI+EVP+K++AVVAFSGFVTD++VK+RE +L
Sbjct: 200 VDGKDQWKMSFVIPSKYGQNFPVPQDTSVRIQEVPRKILAVVAFSGFVTDDEVKKRESRL 259

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 225
           RDALK D++F+VK G+ VEVAQYNPPFTLPF RRNEIALEVE+KE
Sbjct: 260 RDALKNDKEFQVKAGSFVEVAQYNPPFTLPFQRRNEIALEVEKKE 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242061832|ref|XP_002452205.1| hypothetical protein SORBIDRAFT_04g021730 [Sorghum bicolor] gi|241932036|gb|EES05181.1| hypothetical protein SORBIDRAFT_04g021730 [Sorghum bicolor]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 162/225 (72%), Positives = 191/225 (84%), Gaps = 1/225 (0%)

Query: 2   DLATETAKYVFP-KRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
           DLA E+AKY FP +RFE + LEEALM+VPDLETV F+VL R  +YEIREVESYF+AETTM
Sbjct: 69  DLAVESAKYAFPSRRFEPRTLEEALMSVPDLETVPFRVLKREAEYEIREVESYFVAETTM 128

Query: 61  PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
           PGR+GFD NG+S+SFNVLA YLFGKNT  E MEMTTPV TRK +S+GE M+MTTPVI+K+
Sbjct: 129 PGRSGFDFNGSSQSFNVLASYLFGKNTASEQMEMTTPVFTRKGESNGETMDMTTPVITKQ 188

Query: 121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL 180
              ++KW+MSFVMP+KYG+NLP PKDPSV IKEVP K+VAV AFSG VTD+D+  RE KL
Sbjct: 189 SAGKNKWKMSFVMPAKYGSNLPRPKDPSVTIKEVPSKIVAVAAFSGLVTDDDINMRESKL 248

Query: 181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 225
           R++L  D +FRVK+ + VEVAQYNPPFTLPFTRRNEIALEVER +
Sbjct: 249 RESLHKDTEFRVKDDSVVEVAQYNPPFTLPFTRRNEIALEVERND 293

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2100043	309	AT3G10130 "AT3G10130" [Arabido	0.995	0.728	0.699	6.4e-83
TAIR|locus:2065578	225	SOUL-1 [Arabidopsis thaliana (	0.818	0.822	0.361	8.3e-19
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.752	0.894	0.314	6.4e-12
UNIPROTKB|F1NMB9	189	HEBP1 "Heme-binding protein 1"	0.738	0.883	0.291	5.2e-10
UNIPROTKB|Q5ISC6	189	HEBP1 "Heme-binding protein 1"	0.743	0.888	0.297	5.2e-10
UNIPROTKB|Q5ZMB2	189	HEBP1 "Heme-binding protein 1"	0.738	0.883	0.291	6.6e-10
UNIPROTKB|Q6DJ66	190	hebp1 "Heme-binding protein 1"	0.681	0.810	0.254	1.1e-09
UNIPROTKB|Q6NU05	190	hebp1 "Heme-binding protein 1"	0.681	0.810	0.260	1.4e-09
UNIPROTKB|E2RNV4	189	HEBP1 "Uncharacterized protein	0.747	0.894	0.273	1.2e-07
UNIPROTKB|Q9NRV9	189	HEBP1 "Heme-binding protein 1"	0.743	0.888	0.292	1.2e-07

TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 158/226 (69%), Positives = 190/226 (84%)

Query:     2 DLATETAKYVFPKRFESQ-NLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETTM 60
             DLA ETAKYVFPKRF+S  NLEEA M+VPDLET+ F+VL R  +YEIR+VE YF+AET M
Sbjct:    84 DLAMETAKYVFPKRFDSSTNLEEAFMSVPDLETMNFRVLFRTDKYEIRQVEPYFVAETIM 143

Query:    61 PGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK 120
             PG TGFD  GAS+SFNVLAEYLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+ K
Sbjct:   144 PGETGFDSYGASKSFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSK 203

Query:   121 LEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKL 180
              +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++          FSG+VTDE+++RRE +L
Sbjct:   204 AKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERREREL 263

Query:   181 RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 226
             R AL+ D++FRV++G S EVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct:   264 RRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVENKED 309

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 77/213 (36%), Positives = 108/213 (50%)

Query:    31 LETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGF--DLNGASRSFNVLAEYL--FGK- 85
             +ET K+ V      YEIRE      AE T    + F  D +G    F +LA+Y+  FGK 
Sbjct:    20 VETPKYTVTKSGDGYEIREYPPAVAAEVTYDA-SEFKGDKDGG---FQLLAKYIGVFGKP 75

Query:    86 -NTKRETMEMTTPVITRKTQS----------DGEKMEMTTPVISKKL--EDQDKW-QMSF 131
              N K E + MT PVIT++ +           + EK+EMT+PV++K+   E + K   M F
Sbjct:    76 ENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGRKKLVTMQF 135

Query:   132 VMPSKY--GANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQ 189
             ++PS Y      P P D  V IKE          FSG  ++  V  +  KL   L+ D  
Sbjct:   136 LLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLSSHLEKDG- 194

Query:   190 FRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 222
             F++  G  V +A+YNPP+TLP  R NE+ + VE
Sbjct:   195 FKIT-GDFV-LARYNPPWTLPPFRTNEVMIPVE 225

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 60/191 (31%), Positives = 83/191 (43%)

Query:    31 LETVKFKVLSRRGQ-YEIREVESYFIAETTMPGRTGFDLNGA-SRSFNVLAEYLFGKNTK 88
             L+  K+     +G  YE+R  ++     T +   TG + + A S  F  L +Y+ G N K
Sbjct:    14 LQNPKYTAQESKGDDYEVRTYQATNWVSTVV---TGMEQDQAMSTGFRRLFKYIQGSNEK 70

Query:    89 RETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS 148
             +  +EMTTPV        G   E T  V             SF +P ++ A+ P P DP 
Sbjct:    71 KSKVEMTTPVSCLIDPGAGPACESTFTV-------------SFYIPEEHQADPPKPTDPD 117

Query:   149 VRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 208
             V I+           F GF   E      LKL ++LK D   + KE A    A Y+ PF 
Sbjct:   118 VFIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRDGM-KFKE-APYYRAGYDSPFK 175

Query:   209 LPFTRRNEIAL 219
             L   RRNE+ L
Sbjct:   176 LT-GRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NMB9 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 56/192 (29%), Positives = 87/192 (45%)

Query:    31 LETVKFKVLSR--RGQ--YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 86
             +ET  ++VLS+  + Q  YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query:    87 TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
              K   M MT PV IT    +DG                Q K ++   +P+++ A+ P P 
Sbjct:    71 DKGTGMGMTAPVSITAFPAADGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query:   146 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
             D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+P
Sbjct:   117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYDP 173

Query:   206 PFTLPFTRRNEI 217
             P   P+ RRNE+
Sbjct:   174 PMK-PYGRRNEV 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|Q5ISC6 HEBP1 "Heme-binding protein 1" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 58/195 (29%), Positives = 90/195 (46%)

Query:    31 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 85
             +ET  ++VLS+  +    YE R  E    A   M   T   ++ A R +   + +Y+ G 
Sbjct:    13 VETWPWQVLSKGDKQDISYEERACEGGKFATVEM---TDKPVDEALREAMPKVMKYVGGS 69

Query:    86 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
             N K   M MT P+      SDG  ++       KKL+    W   F +P+++ +N P+P 
Sbjct:    70 NDKGIGMGMTVPISFAVFPSDGGSLQ-------KKLK---VW---FRIPNEFQSNPPVPS 116

Query:   146 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YN 204
             D S++I+E          F G+  + D   R  +LR AL+G    R    + V     Y+
Sbjct:   117 DDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCR----SDVYFCTGYD 172

Query:   205 PPFTLPFTRRNEIAL 219
             PP   P+ RRNE+ L
Sbjct:   173 PPMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZMB2 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 56/192 (29%), Positives = 86/192 (44%)

Query:    31 LETVKFKVLSR--RGQ--YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 86
             +ET  ++VLS+  + Q  YE RE E    A   + G+  FD      +  +L +Y+ G N
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEVTGKP-FDEASKEAALKLL-KYVGGSN 70

Query:    87 TKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
              K   M MT PV IT     DG                Q K ++   +P+++ A+ P P 
Sbjct:    71 DKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCPS 116

Query:   146 DPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
             D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+P
Sbjct:   117 DESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYDP 173

Query:   206 PFTLPFTRRNEI 217
             P   P+ RRNE+
Sbjct:   174 PMK-PYGRRNEV 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6DJ66 hebp1 "Heme-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 44/173 (25%), Positives = 73/173 (42%)

Query:    45 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ 104
             +E RE E      T + G+  FD   +  +   L +Y+ G N K   M MT+PV+     
Sbjct:    31 FEEREYEGGKFVSTEVSGKP-FD-EASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSYP 88

Query:   105 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXF 164
             ++ E ++    V+ +             +PS+Y A+ P+P D ++ I++          F
Sbjct:    89 AENETLQPNVKVLLR-------------IPSQYQADPPVPTDDTIHIEDRESVTFYSTQF 135

Query:   165 SGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
              G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   136 GGYAKEADYVSHAAKLRSCLGPDISYHTDH---YMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6NU05 hebp1 "Heme-binding protein 1" [Xenopus laevis (taxid:8355)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 45/173 (26%), Positives = 73/173 (42%)

Query:    45 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ 104
             +E RE E      T + G+  FD   +      L +Y+ G N K   M MT+PVI     
Sbjct:    31 FEEREYEGGKFISTEVSGKP-FD-EASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSYP 88

Query:   105 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXF 164
             S+ + ++    V+ +             +PS+Y A+ P+P D +++I++          F
Sbjct:    89 SENDTLQPNVKVLLR-------------IPSQYQADPPVPTDNTIQIEDRESVTLYSTQF 135

Query:   165 SGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
              G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   136 GGYAKEADYVSHAAKLRSCLGPDISYH---SDYYMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|E2RNV4 HEBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 53/194 (27%), Positives = 86/194 (44%)

Query:    31 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 86
             +ET  ++V+S+ G+    YE R  E    A   +  +   D  G   +   + +Y+ G N
Sbjct:    13 VETWPWQVVSQGGKEEVSYEERTCEGGRFATVEVTDKP-VD-EGLREAMPKVMKYVGGTN 70

Query:    87 TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 146
              K   M MT PV       D   ++       KKL+    W   F +P+++ +N P+P D
Sbjct:    71 DKGIGMGMTVPVSFAVFPGDDGSLQ-------KKLK---VW---FRIPNQFQSNPPVPTD 117

Query:   147 PSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YNP 205
              S++I+E          F G+  + D      +LR AL+G    R    + +     Y+P
Sbjct:   118 DSIKIEERESITVYSLQFGGYAKEADYVAHAAQLRTALEGTATCR----SDIYFCTGYDP 173

Query:   206 PFTLPFTRRNEIAL 219
             P   P+ RRNE+ L
Sbjct:   174 PMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9NRV9 HEBP1 "Heme-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 131 (51.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 57/195 (29%), Positives = 87/195 (44%)

Query:    31 LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASR-SFNVLAEYLFGK 85
             +ET  ++VLS+  +    YE R  E    A   +   T   ++ A R +   +A+Y  G 
Sbjct:    13 VETWPWQVLSKGDKEEVAYEERACEGGKFATVEV---TDKPVDEALREAMPKVAKYAGGT 69

Query:    86 NTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 144
             N K   M MT P+        DG         + KKL+    W   F +P+++ ++ P P
Sbjct:    70 NDKGIGMGMTVPISFAVFPNEDGS--------LQKKLK---VW---FRIPNQFQSDPPAP 115

Query:   145 KDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 204
              D SV+I+E          F G+  + D   +  +LR AL+G   +R   G       Y+
Sbjct:   116 SDKSVKIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYD 172

Query:   205 PPFTLPFTRRNEIAL 219
             PP   P+ RRNEI L
Sbjct:   173 PPMK-PYGRRNEIWL 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR77	HBPL1_ARATH	No assigned EC number	0.7345	0.9955	0.7281	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021606001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (252 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	5e-60

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  185 bits (473), Expect = 5e-60
 Identities = 76/191 (39%), Positives = 100/191 (52%), Gaps = 18/191 (9%)

Query: 30  DLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKR 89
            +ET  + VL R G YEIR  E    AET +   +  D   +   F  LA Y+FGKN   
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAGS-RD-EASGEGFRRLAGYIFGKNRSG 58

Query: 90  ETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY-GANLPLPKDPS 148
           E + MT PV+        + + MT        E    W +SFVMPS Y    LP P DP 
Sbjct: 59  EKIAMTAPVLQ-------QAIPMTADE-----EGSGAWTVSFVMPSGYQAETLPAPLDPD 106

Query: 149 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 208
           VRI+EVP + VAV+ FSG  ++EDV  +  +LR  L+ D    +K      +A YNPP+T
Sbjct: 107 VRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEAD---GLKPRGEPFLAGYNPPWT 163

Query: 209 LPFTRRNEIAL 219
            PF RRNE+ +
Sbjct: 164 PPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	97.44
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	97.0
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	95.53
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.53
PRK10016	156	DNA gyrase inhibitor; Provisional	91.96
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	90.42
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	88.55

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=8.8e-56  Score=367.42  Aligned_cols=175  Identities=42%  Similarity=0.656  Sum_probs=136.6

Q ss_pred             CCCCCCeEEEEecCCeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcc
Q 027241           30 DLETVKFKVLSRRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEK  109 (226)
Q Consensus        30 ~~E~P~Y~vl~~~~~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~  109 (226)
                      ++|||+|+||++.++||||+|++++||||++.+++.  ..|...||++|++||+|+|+++++|+||+||++++.+     
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~--~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~-----   73 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSF--EEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIP-----   73 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-H--HHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEE-----
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCCh--hHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEc-----
Confidence            579999999999999999999999999999987442  2477899999999999999999999999999999843     


Q ss_pred             cccccccccccccCCCeEEEEEEeecCCC-CCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC
Q 027241          110 MEMTTPVISKKLEDQDKWQMSFVMPSKYG-ANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR  188 (226)
Q Consensus       110 i~mt~pv~~~~~~~~~~~tmsF~lP~~~~-~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g  188 (226)
                        |++.      +|++.++|||+||++|| ++||+|+|++|+|+++|++++||++|+|++++.++.+++++|+++|+++|
T Consensus        74 --~~~~------~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g  145 (176)
T PF04832_consen   74 --MTAE------SCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDG  145 (176)
T ss_dssp             --TTTT------TCECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTT
T ss_pred             --CCCc------ccCCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcC
Confidence              3331      25779999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241          189 QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  222 (226)
Q Consensus       189 ~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  222 (226)
                      +.   +.+.+++|+||+||+++++|||||||+|+
T Consensus       146 ~~---~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  146 LK---DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             HH---CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CC---cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            63   56789999999998888999999999986

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=97.44  E-value=0.019  Score=46.16  Aligned_cols=152  Identities=17%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  123 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~  123 (226)
                      +++|+..++...+.....|...   +...++|.+|+.++..+|-.     .+ +.+.... ++        |-......|
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~---~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~-D~--------p~~~~~~~~   63 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWE---QTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYY-DN--------PDEVPAEKL   63 (156)
T ss_pred             ceEEEEccCceEEEEEeecCch---hHHHHHHHHHHHHHHHcCCC-----CC-cEEEEEC-CC--------CCCCChHHc
Confidence            4788999999999888776421   23467899999999665532     22 2333222 11        211100111


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHH-HHHHHhcCCCcceecCCcEEEEE
Q 027241          124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK-LRDALKGDRQFRVKEGASVEVAQ  202 (226)
Q Consensus       124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~A~  202 (226)
                        .+-++.-+|....  .| +.+..+.+..+|+.++||..+.|.  -+.+.+-... +.+||..+|.. . .+++ .+--
T Consensus        64 --R~d~~i~v~~~~~--~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~-~-~~~p-~~E~  133 (156)
T PRK10016         64 --RCDTVVTVPDDFV--LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ-M-APKP-CFEV  133 (156)
T ss_pred             --eeeEEEEeCCCcc--cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc-c-CCCC-CEEE
Confidence              4778889986542  22 233479999999999999999994  4456666656 77999999953 1 2233 3344


Q ss_pred             e-CCCCCCCCCCeeeEEEEeecc
Q 027241          203 Y-NPPFTLPFTRRNEIALEVERK  224 (226)
Q Consensus       203 Y-d~P~~~~~~R~NEV~i~v~~~  224 (226)
                      | +.|... -.-.=||||+|+.+
T Consensus       134 Y~~~~~~~-~~~~tei~iPI~~~  155 (156)
T PRK10016        134 YLNDGAED-GYWDIEMYVPVQKK  155 (156)
T ss_pred             eCCCCCCC-CcEEEEEEEEeEEC
Confidence            5 345432 22235999999853

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=97.00  E-value=0.065  Score=41.08  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhh-hhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCccccccccccccccc
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  122 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a-~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~  122 (226)
                      +++|+.-++...+.....+...  ... ....+.+|..++.-.+-..    ...+.+.........        .   ..
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~--~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~--------~---~~   64 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYE--EEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNI--------T---DD   64 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTS--------S---TG
T ss_pred             CcEEEEECCEEEEEEEEEECCc--hhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEeccccc--------c---CC
Confidence            4788888888888877655211  111 4567888888884332111    455555544332110        0   00


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHH-HHhcCCCcceecCCcEEEE
Q 027241          123 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD-ALKGDRQFRVKEGASVEVA  201 (226)
Q Consensus       123 ~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~A  201 (226)
                      ..-.+.+++.++...      +....+.+..+|+..+++..|.|-.  +.+.+....|.. ||.++|..  ...+..+-.
T Consensus        65 ~~~~~~~~~~~~~~~------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~--~~~~~~~E~  134 (155)
T PF06445_consen   65 EEFRYDIGVEVDEDV------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE--RRDGPDFEI  134 (155)
T ss_dssp             CEEEEEEEEEECTTC------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE--EESSEEEEE
T ss_pred             cceEEEEEEEEcccc------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc--cCCCCcEEE
Confidence            122455555555433      4557888999999999999999977  778888899999 99999973  233444444


Q ss_pred             EeCCCCCCCCCCeeeEEEEee
Q 027241          202 QYNPPFTLPFTRRNEIALEVE  222 (226)
Q Consensus       202 ~Yd~P~~~~~~R~NEV~i~v~  222 (226)
                      ..+.|...+-.-.=||||+|+
T Consensus       135 y~~~~~~~~~~~~~ei~iPik  155 (155)
T PF06445_consen  135 YLNDPDTDEEEYVTEIYIPIK  155 (155)
T ss_dssp             EESSTTTTSCGEEEEEEEEEE
T ss_pred             ECCCCCCCCCceEEEEEEEEC
Confidence            445655333456679999986

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=95.53  E-value=0.8  Score=37.52  Aligned_cols=148  Identities=17%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  123 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~  123 (226)
                      +++|+..++..+|.-...|.    ..-..++|.+|+.+-.-++--    +-+ ..+..+..++.+   .|.|       .
T Consensus         2 dv~I~e~p~~~VA~~rh~G~----~~~~~~~~~~l~~W~~~~~l~----p~~-S~~~gI~~ddP~---~Tp~-------e   62 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVGD----PATLKQTFEQLIAWRRENGLL----PEQ-SETLGIYQDDPD---TTPA-------E   62 (154)
T ss_pred             CceEEecCCceEEEEEeeCc----HHHHHHHHHHHHHHHHHcCCC----CCC-ceEEEEecCCCC---CCCH-------H
Confidence            68999999999998877662    233568999999999765532    122 233333333311   1111       1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe
Q 027241          124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY  203 (226)
Q Consensus       124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Y  203 (226)
                      +=.+-.|..+|...     .+++..|..-++|+..+||.+|.|.. +.--+.-..-...||.+.|..   ..+.+.+.+|
T Consensus        63 ~~R~D~cv~v~~~~-----~~n~~~v~~~~i~GG~YAV~r~~~~~-d~~~~aw~~if~ewlp~Sg~~---~~d~P~~e~y  133 (154)
T COG3449          63 KCRYDACVVVPEPI-----PENSEGVQLGEIPGGLYAVARFRGTA-DDLAKAWGYIFGEWLPASGYE---PRDRPILERY  133 (154)
T ss_pred             HceeeEEEEcCCcc-----CCCCCceeEeeecCCceEEEEEeccH-HHHHHHHHHHHhhhccccCcc---cCCCchHHHH
Confidence            22677888888322     24667899999999999999999954 333344445566778888853   4566778888


Q ss_pred             CCCCCCCCCCeeeEEEEe
Q 027241          204 NPPFTLPFTRRNEIALEV  221 (226)
Q Consensus       204 d~P~~~~~~R~NEV~i~v  221 (226)
                      =+....  .-..|+.+.+
T Consensus       134 ~n~~~~--~~~~e~~vdi  149 (154)
T COG3449         134 LNFPAE--DPEHEIEVDI  149 (154)
T ss_pred             hccCCC--CcceeEEEEE
Confidence            444333  3344544443

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.53  E-value=0.35  Score=39.62  Aligned_cols=58  Identities=21%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC
Q 027241          148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL  209 (226)
Q Consensus       148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~  209 (226)
                      +|.|.+.|+..||..+-.|  ....+.+-..+|.+|.+++|+..  ..+..+.-.||.|-..
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p--~~S~~~gI~~ddP~~T   59 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP--EQSETLGIYQDDPDTT   59 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC--CCceEEEEecCCCCCC
Confidence            7999999999999999999  78889999999999999999852  3455666677888643

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=91.96  E-value=1.3  Score=35.43  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCC--CCCCCCCeeeEEEEe
Q 027241          148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP--FTLPFTRRNEIALEV  221 (226)
Q Consensus       148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P--~~~~~~R~NEV~i~v  221 (226)
                      +|.|.++|+..++.++..|-..+ .+.+...+|.+++.++|+.   .. .++...||.|  ... -.-|-.|.|.+
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---~~-~~~~i~~D~p~~~~~-~~~R~d~~i~v   71 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---PK-EWVAVYYDNPDEVPA-EKLRCDTVVTV   71 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---CC-cEEEEECCCCCCCCh-HHceeeEEEEe
Confidence            58999999999999999996643 4778889999999999974   23 3677888999  443 23244444443

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=90.42  E-value=6.3  Score=29.87  Aligned_cols=156  Identities=13%  Similarity=0.145  Sum_probs=84.0

Q ss_pred             eEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccCC
Q 027241           45 YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQ  124 (226)
Q Consensus        45 yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~~  124 (226)
                      +++..-++...+.....+... + ....+.|.+|+.++...+.......  .+++..........     +      ...
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~------~~~   66 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYE-E-EKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPDDT-----P------EGE   66 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcc-c-ccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCCCC-----C------hhH
Confidence            344455556666555544221 1 1235678888888865543322211  23333221111100     0      011


Q ss_pred             CeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeC
Q 027241          125 DKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN  204 (226)
Q Consensus       125 ~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd  204 (226)
                      -.+.+++.++....      ....+.+..+|+..+++..|.| ...+.+.+-..+|..++..+|.....+.+..+--.++
T Consensus        67 ~~~~~g~~v~~~~~------~~~~~~~~~~p~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~  139 (158)
T smart00871       67 FRYDAGVEVSDEVE------NPEGVETKEIPAGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLN  139 (158)
T ss_pred             eEEEEEEEeCCCCC------CCCCceEEEECCCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeC
Confidence            24556666664311      2246888999999999999999 3467789999999999988775321112333333345


Q ss_pred             CCCC-CCCCCeeeEEEEee
Q 027241          205 PPFT-LPFTRRNEIALEVE  222 (226)
Q Consensus       205 ~P~~-~~~~R~NEV~i~v~  222 (226)
                      .|.. .+-...=|++|+|+
T Consensus       140 ~~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      140 DPADTDPEELVTEIYIPIK  158 (158)
T ss_pred             CCCCCChhHeEEEEEEEcC
Confidence            5532 11234668888874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=88.55  E-value=1.7  Score=33.03  Aligned_cols=72  Identities=21%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             CeEEEEeCCeEEEEEEeCCcCChHH-HHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241          148 SVRIKEVPKKVVAVVAFSGFVTDED-VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  222 (226)
Q Consensus       148 ~V~i~~~p~~~vav~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  222 (226)
                      +|+|.++|+++++..+..|-..+.. +.+...+|.+++...++..  ....++..-||.|... ......+++-+.
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~~~~~~~~~~   74 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST--DPGPIIGIYYDNPNIT-DDEEFRYDIGVE   74 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC--SSSSEEEEEEECCTSS-TGCEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc--CCCcceeEEecccccc-CCcceEEEEEEE
Confidence            5899999999999999999887777 8999999999999987531  3456777788888543 356666655444

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		1e-07
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		1e-07
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		1e-07
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		6e-04
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		7e-04

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 103 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 157
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 71  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 158 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 218 AL 219
            L
Sbjct: 188 WL 189

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 103 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 157
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 158 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 218 AL 219
            L
Sbjct: 191 WL 192

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 103 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 157
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 158 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 217
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 218 AL 219
            L
Sbjct: 191 WL 192

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 43  GQYEIREVESYFIAETTMPGRTGFDLNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 101
           G YEIR    Y  A+         D + A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 58  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 114
Query: 102 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 161
                G   E T  +             S  +PS+   + P P +  V I++        
Sbjct: 115 VEPGSGPFSESTITI-------------SLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 161
Query: 162 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 219
             F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 162 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 20/178 (11%)
Query: 43  GQYEIREVESYFIAETTMPGRTGFDLNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 101
           G YEIR    Y  A+         D + A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 39  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 95
Query: 102 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 161
                G   E T               +S  +PS+   + P P +  V I++        
Sbjct: 96  VEPGSGPFSESTI-------------TISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 142
Query: 162 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 219
             F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 143 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	9e-36
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	4e-35
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	3e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  125 bits (314), Expect = 9e-36
 Identities = 50/228 (21%), Positives = 80/228 (35%), Gaps = 23/228 (10%)

Query: 3   LATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLS----RRGQYEIREVESYFIAET 58
              + A  +           E   A   +ET  +K       + G YEIR         T
Sbjct: 15  SLYKKAGTMAEPLQPDPGAAEDAAA-QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVST 73

Query: 59  TMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVIS 118
           ++              F  L  Y+ GKN K   ++MT PV +      G   E       
Sbjct: 74  SVESMDWDS--AIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSES------ 125

Query: 119 KKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRREL 178
                     +S  +PS+   + P P +  V I++  +  V V +F GF + +  + + L
Sbjct: 126 -------TITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 178

Query: 179 KLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 226
            L   L+ D   +V +      A YN P      R NE+ L  + +  
Sbjct: 179 TLASILREDG--KVFDEKVYYTAGYNSPVK-LLNRNNEVWLIQKNEPT 223

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  122 bits (307), Expect = 4e-35
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 31  LETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKN 86
           +ET  ++VLS  G+    YE R  E    A   +  +   +      +   + +Y+ G N
Sbjct: 18  VETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDE--ALREAMPKIMKYVGGTN 75

Query: 87  TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 146
            K   M MT PV      ++   ++              K ++ F +P+++  + P P D
Sbjct: 76  DKGVGMGMTVPVSFAVFPNEDGSLQK-------------KLKVWFRIPNQFQGSPPAPSD 122

Query: 147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP 206
            SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+PP
Sbjct: 123 ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDPP 180

Query: 207 FTLPFTRRNEIAL 219
              P+ RRNE+ L
Sbjct: 181 MK-PYGRRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  118 bits (295), Expect = 3e-33
 Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 22/201 (10%)

Query: 30  DLETVKFKVLS----RRGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK 85
            +ET  +K       + G YEIR         T++              F  L  Y+ GK
Sbjct: 22  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDWDS--AIQTGFTKLNSYIQGK 79

Query: 86  NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
           N K   ++MT PV +      G   E                 +S  +PS+   + P P 
Sbjct: 80  NEKEMKIKMTAPVTSYVEPGSGPFSES-------------TITISLYIPSEQQFDPPRPL 126

Query: 146 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
           +  V I++  +  V V +F GF + +  + + L L   L+ D   +V +      A YN 
Sbjct: 127 ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNS 184

Query: 206 PFTLPFTRRNEIALEVERKEE 226
           P      R NE+ L  + +  
Sbjct: 185 PVK-LLNRNNEVWLIQKNEPT 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 38/259 (14%), Positives = 80/259 (30%), Gaps = 82/259 (31%)

Query: 3   LATETAKYVFPKRFESQNLEEALMA---VPDLETVK-F----KVL--SRRGQYEIREVES 52
           L   + +    +  +S+  E  L+    V + +    F    K+L  +R      ++V  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTD 279

Query: 53  YFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEM 112
           +  A TT    T   L+  S +            T  E   +    +  + Q    ++  
Sbjct: 280 FLSAATT----THISLDHHSMTL-----------TPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 113 TTP----VISKKLEDQ----DKW------QMSFVMPSKYGANLP-------------LPK 145
           T P    +I++ + D     D W      +++ ++ S     L               P 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPP 383

Query: 146 DPSVRIKEVPKKVVAVV------AFSGFVTDEDVKRRELKLRDALKG-----DRQFRVKE 194
                I   P  +++++      +    V ++  K   ++ +   +           +K 
Sbjct: 384 S--AHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKV 437

Query: 195 GASVE-------VAQYNPP 206
               E       V  YN P
Sbjct: 438 KLENEYALHRSIVDHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.32
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.32
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	96.67
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.32
3lur_A	158	Putative bacterial transcription regulation prote;	92.9
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	90.61
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	86.92
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	82.68

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=5.9e-56  Score=380.88  Aligned_cols=180  Identities=27%  Similarity=0.388  Sum_probs=154.8

Q ss_pred             cCCCCCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEE
Q 027241           27 AVPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRK  102 (226)
Q Consensus        27 ~~~~~E~P~Y~vl~~----~~~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~  102 (226)
                      .|+++|||+|+||++    .++||||+|++++||+|++.+.+.  .+|...||++|++||+|+|.++.+|+||+||++++
T Consensus        38 ~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~  115 (227)
T 4b0y_A           38 AAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYV  115 (227)
T ss_dssp             ---CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEE
T ss_pred             ccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEE
Confidence            378999999999999    899999999999999999976332  24678899999999999999999999999999998


Q ss_pred             ecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHH
Q 027241          103 TQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD  182 (226)
Q Consensus       103 ~~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~  182 (226)
                      .++++       |+      |.+.++|+|+||++||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|++
T Consensus       116 ~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~  182 (227)
T 4b0y_A          116 EPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS  182 (227)
T ss_dssp             ECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             ecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHH
Confidence            87654       33      367899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeecc
Q 027241          183 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  224 (226)
Q Consensus       183 ~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~~  224 (226)
                      +|+++|+.  ..++.|++||||+||++ ++|||||||.++..
T Consensus       183 ~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  221 (227)
T 4b0y_A          183 ILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  221 (227)
T ss_dssp             HHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred             HHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence            99999974  35677899999999997 99999999998754

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=4e-56  Score=374.50  Aligned_cols=178  Identities=28%  Similarity=0.391  Sum_probs=160.6

Q ss_pred             cCCCCCCCCeEEEEecCC----eEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEE
Q 027241           27 AVPDLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRK  102 (226)
Q Consensus        27 ~~~~~E~P~Y~vl~~~~~----yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~  102 (226)
                      -|++.|||+|+||++.++    ||||+|++++||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||++++
T Consensus        14 ~~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~   91 (195)
T 2gov_A           14 LFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAV   91 (195)
T ss_dssp             CCCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEE
T ss_pred             ccCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEE
Confidence            388999999999999887    999999999999999976432  24778899999999999999999999999999998


Q ss_pred             ecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHH
Q 027241          103 TQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD  182 (226)
Q Consensus       103 ~~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~  182 (226)
                      .++++       |.      |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|++
T Consensus        92 ~p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~  158 (195)
T 2gov_A           92 FPNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRT  158 (195)
T ss_dssp             EECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred             cCCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHH
Confidence            76543       32      366899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241          183 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  222 (226)
Q Consensus       183 ~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  222 (226)
                      +|+++|+.  ..++.|++|+||+||++ ++|||||||..+
T Consensus       159 ~L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~  195 (195)
T 2gov_A          159 TLEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA  195 (195)
T ss_dssp             HTTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred             HHHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence            99999975  24567899999999998 999999999863

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=6.8e-56  Score=377.31  Aligned_cols=179  Identities=26%  Similarity=0.385  Sum_probs=160.8

Q ss_pred             CCCCCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEe
Q 027241           28 VPDLETVKFKVLSR----RGQYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT  103 (226)
Q Consensus        28 ~~~~E~P~Y~vl~~----~~~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~  103 (226)
                      +.++|||+|+||++    .++||||+|++++||+|++.+.+.  .+|...||++|++||+|+|.++.+|+||+||++++.
T Consensus        20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~   97 (212)
T 3r8j_A           20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE   97 (212)
T ss_dssp             --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred             cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence            56899999999999    799999999999999999976332  246788999999999999999999999999999988


Q ss_pred             cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 027241          104 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  183 (226)
Q Consensus       104 ~~~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  183 (226)
                      ++++       |+      |.+.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus        98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  164 (212)
T 3r8j_A           98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI  164 (212)
T ss_dssp             CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence            7654       33      3678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeecc
Q 027241          184 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  224 (226)
Q Consensus       184 L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~~  224 (226)
                      |+++|+.  ..++.|++|+||+||++ ++|||||||.++..
T Consensus       165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  202 (212)
T 3r8j_A          165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  202 (212)
T ss_dssp             HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred             HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence            9999974  35677899999999997 99999999998854

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.32  E-value=3.4e-05  Score=60.34  Aligned_cols=148  Identities=11%  Similarity=0.066  Sum_probs=98.4

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChh-hhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCccccccccccccccc
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  122 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~-a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~  122 (226)
                      +++|+..++...|.....+.. .+.. .....|.+|+.++..+|-     ..+.|.+......+.               
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~---------------   66 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA---------------   66 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred             ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence            678999999999888765531 1111 123568999999876552     334554443332110               


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 027241          123 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ  202 (226)
Q Consensus       123 ~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~  202 (226)
                      .+-.+.+++-++...      +.+..|.+..+|+.++|+..+.|-..+  +.+.-.+|.+||.++|+.   ..+..+-..
T Consensus        67 ~~~~~~~~~~v~~~~------~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~---~~~~~~E~Y  135 (158)
T 3e0h_A           67 GTFEVEFGFPVEGGV------EGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD---LSGEAYEIY  135 (158)
T ss_dssp             SCEEEEEEEECCSCC------CCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC---EEEEEEEEE
T ss_pred             cceEEEEEEEeCCCC------CCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC---cCCCEEEEE
Confidence            122456666655422      234689999999999999999997653  788888899999999964   224444444


Q ss_pred             eCCCCC-CCCCCeeeEEEEeec
Q 027241          203 YNPPFT-LPFTRRNEIALEVER  223 (226)
Q Consensus       203 Yd~P~~-~~~~R~NEV~i~v~~  223 (226)
                      +|+|.. .+-..+.||||+|+.
T Consensus       136 ~~~p~~~~~~~~~tei~ipv~~  157 (158)
T 3e0h_A          136 LDNPAETAPDQLRTRVSLMLHE  157 (158)
T ss_dssp             CSCTTSSCGGGCEEEEEEEECC
T ss_pred             eCCCCCCCHHHhEEEEEEEEcC
Confidence            577874 345678999999974

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.32  E-value=1.4e-05  Score=60.64  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=98.5

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  123 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~  123 (226)
                      +++|+..++...+.....+..  + +....+|.+|++++...|-..      .+.+. +.-++        |....  ..
T Consensus         2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~g-i~~~~--------~~~~~--~~   61 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVA-VYYDN--------PDETP--AE   61 (157)
T ss_dssp             CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEE-EECSC--------TTTSC--GG
T ss_pred             CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEE-EECCC--------CCCCC--HH
Confidence            478999999998888766521  1 234578999999997665321      14432 22111        11100  01


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 027241          124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ  202 (226)
Q Consensus       124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~  202 (226)
                      .-.+.+++.+|....  +| |.++.+.+..+|+.++||..|.|...  .+.+.-..|. +||.++|..   ..+.+.+-.
T Consensus        62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~  133 (157)
T 1jyh_A           62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV  133 (157)
T ss_dssp             GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred             HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence            236778888886543  22 45678999999999999999999763  3666677775 999999853   233345667


Q ss_pred             eC-CCCCCCCCCeeeEEEEeeccC
Q 027241          203 YN-PPFTLPFTRRNEIALEVERKE  225 (226)
Q Consensus       203 Yd-~P~~~~~~R~NEV~i~v~~~~  225 (226)
                      |. .|.. +-..+-||||+|+.+.
T Consensus       134 Y~~~~~~-~~~~~tei~ipi~~~~  156 (157)
T 1jyh_A          134 YLNNGAE-DGYWDIEMYVAVQPKH  156 (157)
T ss_dssp             ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred             ecCCCCC-cccEEEEEEEEeeeCC
Confidence            73 3333 3355679999998654

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=96.67  E-value=0.079  Score=44.83  Aligned_cols=152  Identities=14%  Similarity=0.065  Sum_probs=92.8

Q ss_pred             cCCeEEEEeCCceEEEEEc-CCCCccChhhh-hHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccc
Q 027241           42 RGQYEIREVESYFIAETTM-PGRTGFDLNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK  119 (226)
Q Consensus        42 ~~~yEiR~Y~~~~wa~t~v-~~~~~~~~~a~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~  119 (226)
                      ..+++|+..++...+.... .+.    .... ...|.+|..++...+     +..+.|+.......+     ++..    
T Consensus       121 ~~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~~~----  182 (278)
T 1r8e_A          121 LGEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YTSI----  182 (278)
T ss_dssp             TTCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CSCG----
T ss_pred             CCceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hhcC----
Confidence            3468899999998887765 221    1223 467899999995543     334557654432211     0000    


Q ss_pred             cccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcE
Q 027241          120 KLEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASV  198 (226)
Q Consensus       120 ~~~~~~~~-tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~  198 (226)
                         .-..+ .+++.++...   .|.|.+..|.+..+|+..+++..+.|-.  +.+.+....|.+||.++|+. .  .+..
T Consensus       183 ---~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~  251 (278)
T 1r8e_A          183 ---DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDV  251 (278)
T ss_dssp             ---GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEE
T ss_pred             ---CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCe
Confidence               01112 2444444321   1223456799999999999999999955  45677778888999999964 2  2344


Q ss_pred             EEEEeCCCCCC--CCCCeeeEEEEee
Q 027241          199 EVAQYNPPFTL--PFTRRNEIALEVE  222 (226)
Q Consensus       199 ~~A~Yd~P~~~--~~~R~NEV~i~v~  222 (226)
                      +--.++.|+..  +-.-.-||||+|+
T Consensus       252 ~E~y~~~~~~~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          252 YELIIPIHYSPKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             EEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred             EEEEeecccccCChhheEEEEEEEec
Confidence            44445566653  2234579999986

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.32  E-value=0.13  Score=41.96  Aligned_cols=165  Identities=10%  Similarity=-0.007  Sum_probs=95.8

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhh------ccCCCCCcc-cCCCC-cEEEEEecCCCcccccccc
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYL------FGKNTKRET-MEMTT-PVITRKTQSDGEKMEMTTP  115 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI------~G~N~~~~k-i~MT~-PV~~~~~~~~~~~i~mt~p  115 (226)
                      +++|+.-++...+.....+.. .+ .....+|.+|+..+      ..++-.... -..+. |.......++        |
T Consensus        24 ~v~i~~~p~~~v~~i~~~g~~-~~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~   93 (211)
T 3b49_A           24 KPERIFVPEMNFLMVDGKGDP-DG-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K   93 (211)
T ss_dssp             SCEEEEEEEEEEEEEEEESCT-TS-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred             CcEEEEECCeeEEEEEeecCC-CH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence            578888888888888766532 11 13457899999887      433321111 11122 3332221111        1


Q ss_pred             cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 027241          116 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  183 (226)
Q Consensus       116 v~~~~~~~~~~~tmsF~lP~~~~~------------~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  183 (226)
                      ...+ ...+-.|.+++-+|.....            ..|.+....|.+..+|+..+++..+.|-..  .+.+-...|.+|
T Consensus        94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w  170 (211)
T 3b49_A           94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF  170 (211)
T ss_dssp             CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred             cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence            0000 0012367788888864321            023334467999999999999999999765  366777888899


Q ss_pred             HhcCCCcceec--CCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 027241          184 LKGDRQFRVKE--GASVEVAQYNPPFTLP-FTRRNEIALEVE  222 (226)
Q Consensus       184 L~~~g~~~~~~--~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~  222 (226)
                      |.++|+.. ..  ++..+--.++.|...+ -.-+=||+++|+
T Consensus       171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence            99999721 11  1444444447776432 233568898874

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=92.90  E-value=1  Score=34.58  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=50.8

Q ss_pred             CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 027241          147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  223 (226)
Q Consensus       147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~  223 (226)
                      ..+....+|+.++||.++.|-..+ .+++--..+ ..||-+.|..   ....+-+-.|+.....+-.-.-||||+|++
T Consensus        85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            468889999999999999996544 455555554 4689988864   233456677866433223456799999974

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=90.61  E-value=1.1  Score=37.44  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCeeeEEEE
Q 027241          147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE  220 (226)
Q Consensus       147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd----~P~~~~-~~R~NEV~i~  220 (226)
                      ..+....+|+.++||..+.|-  .+.+.+-...|. +||.++|...  . +.+-+-.|.    +|...+ -.-.=||||+
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~--~-~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP  284 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR--R-KGQDIERYYPAEDAKAGDRPINLRCELLIP  284 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE--C-SSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc--C-CCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence            468889999999999999994  556777888885 9999999631  2 233455564    333221 1123499999


Q ss_pred             eecc
Q 027241          221 VERK  224 (226)
Q Consensus       221 v~~~  224 (226)
                      |+.+
T Consensus       285 I~~k  288 (292)
T 1d5y_A          285 IRRK  288 (292)
T ss_dssp             EECC
T ss_pred             eehh
Confidence            9864

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=86.92  E-value=9.4  Score=29.73  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=46.9

Q ss_pred             CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 027241          147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  222 (226)
Q Consensus       147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  222 (226)
                      ..+....+|+.++||-++.|-.. +.+++--..+..||-..|  ..   ....+-+-.|+...      .-||||+|+
T Consensus       103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~  170 (170)
T 3gk6_A          103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR  170 (170)
T ss_dssp             TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred             CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence            57888999999999999999543 466676777777999988  53   23456677786531      679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=82.68  E-value=7.6  Score=29.16  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=47.2

Q ss_pred             CeEEEEeCCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 027241          148 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  223 (226)
Q Consensus       148 ~V~i~~~p~~~vav~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~  223 (226)
                      +|.|++.|+.+|+.++..|...+  ..+.+.-.+|.+++..+|+.   ..+..+..-||  +.. -.=+=|+.+++..
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence            68999999999999999987422  23446667899999999863   33444444455  222 2345677777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	3e-39

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (331), Expect = 3e-39
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 30  DLETVKFKVLSRRGQ----YEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGK 85
            +ET  ++VLS  G+    YE R  E    A   +  +   D      +   + +Y+ G 
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKP-VD-EALREAMPKIMKYVGGT 63

Query: 86  NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 145
           N K   M MT PV      ++   ++              K ++ F +P+++  + P P 
Sbjct: 64  NDKGVGMGMTVPVSFAVFPNEDGSLQ-------------KKLKVWFRIPNQFQGSPPAPS 110

Query: 146 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 205
           D SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+P
Sbjct: 111 DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDP 168

Query: 206 PFTLPFTRRNEI 217
           P   P+ RRNE+
Sbjct: 169 PMK-PYGRRNEV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	98.08
d1r8ea2	157	Multidrug-binding domain of transcription activato	96.81
d1d5ya3	173	Rob transcription factor, C-terminal domain {Esche	82.17
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	81.37

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-55  Score=361.55  Aligned_cols=173  Identities=28%  Similarity=0.410  Sum_probs=156.5

Q ss_pred             CCCCCCeEEEEecC----CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecC
Q 027241           30 DLETVKFKVLSRRG----QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS  105 (226)
Q Consensus        30 ~~E~P~Y~vl~~~~----~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~  105 (226)
                      ++|||+|+||++.+    +||||+|++++||||++.+++.  .+|...||++|++||+|+|+++++|+||+||++++.++
T Consensus         6 ~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~--~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~   83 (184)
T d2gova1           6 SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN   83 (184)
T ss_dssp             SCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEEC
T ss_pred             cccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCCh--hhHHHhhhHHHhheeccCCCCCcccccccceEEEEecC
Confidence            78999999999865    7999999999999999987542  24678899999999999999999999999999998876


Q ss_pred             CCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHh
Q 027241          106 DGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALK  185 (226)
Q Consensus       106 ~~~~i~mt~pv~~~~~~~~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~  185 (226)
                      ++       +      .|.+.|+|||+||++|+++||+|+|++|+|.++|++++||++|+|+++++++.+++++|+++|+
T Consensus        84 ~~-------~------~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~  150 (184)
T d2gova1          84 ED-------G------SLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLE  150 (184)
T ss_dssp             TT-------S------CEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTT
T ss_pred             CC-------C------cccCcEEEEEEcchhhcccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHH
Confidence            54       1      2467899999999999989999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEE
Q 027241          186 GDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALE  220 (226)
Q Consensus       186 ~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~  220 (226)
                      ++|+.  ..++.+++|+||+||++ |+|||||||.
T Consensus       151 ~~g~~--~~~~~~~~a~Yd~P~~p-~~R~NEVw~v  182 (184)
T d2gova1         151 GTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLV  182 (184)
T ss_dssp             TSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEE
T ss_pred             HCCCc--ccCCCEEEEEeCCCCCC-CCcceeEEEE
Confidence            99975  24556789999999996 9999999995

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3.2e-05  Score=58.15  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=97.0

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  123 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~  123 (226)
                      +|||+..++.+.|.....|..   .+...++|.+|+.++..++     +..+.++.....  +        |..+..  .
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~---~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~--~--------p~~~~~--~   61 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYD--N--------PDETPA--E   61 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH---HHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECS--C--------TTTSCG--G
T ss_pred             CcEEEEECCEEEEEEEEEcCc---HHHHHHHHHHHHHHHHHhC-----CCCCCceEEEec--C--------cCcCCc--c
Confidence            689999999999998877632   1335688999999997654     333444333211  1        111111  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEE
Q 027241          124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQ  202 (226)
Q Consensus       124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~  202 (226)
                      +-.+.+++.++....  .| ..+..|.+..+|+.++|+..+.|-..+  +.+....| .+||.++|..   ..+.+.+-.
T Consensus        62 ~~~~~~~v~v~~~~~--~~-~~~~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~---~~~~p~~E~  133 (155)
T d1jyha_          62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE---MLPKPCFEV  133 (155)
T ss_dssp             GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred             ceeEEEEEEcCCccc--cC-cccceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe---ECCCccEEE
Confidence            236788888887654  33 234579999999999999999997543  34444455 6899999953   222344445


Q ss_pred             eC-CCCCCCCCCeeeEEEEeecc
Q 027241          203 YN-PPFTLPFTRRNEIALEVERK  224 (226)
Q Consensus       203 Yd-~P~~~~~~R~NEV~i~v~~~  224 (226)
                      |. .|...+. -.=||||+|+++
T Consensus       134 Y~~~~~~~~~-~~~ei~iPIk~k  155 (155)
T d1jyha_         134 YLNNGAEDGY-WDIEMYVAVQPK  155 (155)
T ss_dssp             ECSCHHHHSS-EEEEEEEEEEEC
T ss_pred             EcCCCCCCCC-EEEEEEEEEEEC
Confidence            63 4433322 224999999874

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.81  E-value=0.03  Score=42.00  Aligned_cols=152  Identities=14%  Similarity=0.052  Sum_probs=93.5

Q ss_pred             CeEEEEeCCceEEEEEcCCCCccChhhhhHHHHHHHHhhccCCCCCcccCCCCcEEEEEecCCCcccccccccccccccC
Q 027241           44 QYEIREVESYFIAETTMPGRTGFDLNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  123 (226)
Q Consensus        44 ~yEiR~Y~~~~wa~t~v~~~~~~~~~a~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~i~mt~pv~~~~~~~  123 (226)
                      +.-|+.=+..+.+++...+...  ......+|.+|++|+..+|.     -..-++-..++-.+-.+            ..
T Consensus         3 ev~i~~~~ei~i~~~~~e~i~p--~~~~~~~~~~L~~~~~~~~~-----~~~~~~G~~~~~~~~~~------------~~   63 (157)
T d1r8ea2           3 EVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADG-----FTNNSYGATFSFQPYTS------------ID   63 (157)
T ss_dssp             CCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHS-----SCCCCEEEEECCCCCSC------------GG
T ss_pred             ceEEeccCcEEEEEEEecccCc--hHHHHHHHHHHHHHHHHcCC-----CCCCceEEEEECCCccc------------Cc
Confidence            4556677777888887665322  22346789999999977653     23445555543222100            01


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe
Q 027241          124 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY  203 (226)
Q Consensus       124 ~~~~tmsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Y  203 (226)
                      ...+.-.|..... . .-+...++.+.+...|+.++++..|.|..  +.+.+.-.+|.+||.++|+.   ..+..+=-..
T Consensus        64 ~~~y~~~~~~~~~-~-~~~~~~~~~~~~~~lp~G~ya~~~~~G~y--~~~~~~y~~l~~~~~~~g~~---~~g~~~E~y~  136 (157)
T d1r8ea2          64 EMTYRHIFTPVLT-N-KQISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT---VVSDVYELII  136 (157)
T ss_dssp             GCCCSEEEEECCC-C-SCCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC---EEEEEEEEEE
T ss_pred             ceEEEEEEEeccc-c-cccCCccCCceEEecCCeEEEEEEEEECc--cchHHHHHHHHHHHHhcCcC---cCCCeEEEEE
Confidence            2233333332211 1 12333457899999999999999999976  47788888999999999963   2344444445


Q ss_pred             CCCCCCC--CCCeeeEEEEe
Q 027241          204 NPPFTLP--FTRRNEIALEV  221 (226)
Q Consensus       204 d~P~~~~--~~R~NEV~i~v  221 (226)
                      +.|+...  -.-.=||.|+|
T Consensus       137 ~d~~~~~~~~~~~teI~ipv  156 (157)
T d1r8ea2         137 PIHYSPKKQEEYRVEMKIRI  156 (157)
T ss_dssp             ESCCCSSSCCCEEEEEEEEE
T ss_pred             cCCCCCCCHHHeEEEEEEEe
Confidence            7776542  23345666665

>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Rob transcription factor, C-terminal domain
domain: Rob transcription factor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=4.2  Score=29.64  Aligned_cols=73  Identities=11%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             CCeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEe----CCCCCCC-CCCeeeEEEE
Q 027241          147 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQY----NPPFTLP-FTRRNEIALE  220 (226)
Q Consensus       147 ~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Y----d~P~~~~-~~R~NEV~i~  220 (226)
                      ..+....+|+.++||.+|.|..  +.+.+-...| .+||-+.|..   ..+.+-+=.|    |.+...+ -.-.=|+||+
T Consensus        91 ~~~~~~~ip~g~YAvf~~~G~~--~~l~~~~~~iy~~wLP~sg~~---~~~~~d~E~Y~~~~~~~~~~~~~~~~~e~~IP  165 (173)
T d1d5ya3          91 LTGHPVMLQGGEYVMFTYEGLG--TGVQEFILTVYGTCMPMLNLT---RRKGQDIERYYPAEDAKAGDRPINLRCELLIP  165 (173)
T ss_dssp             TTCEEEEECCEEEEEEEEEEEG--GGHHHHHHHHHHTHHHHTTCE---ECSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CCCEEEEEcCcEEEEEEEEeCH--HHHHHHHHHHHHHhhhhCCCc---cCCCCCEEEEecccCCCCCCCCccEEEEEEEE
Confidence            4666778999999999999964  4466666666 5699999964   2344667778    4555431 1234589999


Q ss_pred             eecc
Q 027241          221 VERK  224 (226)
Q Consensus       221 v~~~  224 (226)
                      |+.+
T Consensus       166 Ikk~  169 (173)
T d1d5ya3         166 IRRK  169 (173)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9865

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=81.37  E-value=3.1  Score=29.33  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CeEEEEeCCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 027241          148 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE  222 (226)
Q Consensus       148 ~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~  222 (226)
                      ++.|++.|+.+|+..+..|-. .+.+.+--.+|.+++.++++.   . .......||.|-..+ -.-+-++.+.+.
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~---~-~~~~~~~~~~p~~~~~~~~~~~~~v~v~   72 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP   72 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC---C-CCceEEEecCcCcCCccceeEEEEEEcC
Confidence            478999999999999988854 445778888999999999863   2 345566678775532 223466666664