Citrus Sinensis ID: 027251

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCLKT
cEEEEEEcEEEEEEEEEEEEccccccccccccccccccEEEEccEEcccccEEEEccccccEEEEEEEEEccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccccEEEEEcEEEcccEEcccccccc
cEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEcccccccccccccHHHccc
mfhivingcndvKVQGVKvsaagespntdgihvqsssgvtildskigtgddcvsvgpgatnlwienvacgpghgisigslgkeqqeagvqNVTVTSVTftgtqngvrikswgrtsggfarNILFQHALmnnvdnpiiidqnycpdngncpgqasgvkisdviyqdihgtsatevgvkldcssknpctgisleDVKLIyknqpaeasctnadgsasgfvlpnsclkt
mfhivingcndvKVQGVKVSAagespntdgihvqssSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTsvtftgtqngvrikswgrtsGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEAsctnadgsasgfvlpnsclkt
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCLKT
*FHIVINGCNDVKVQGVKV******************GVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN**************************
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCLK*
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLG********QNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCLKT
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLP******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCLKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query226 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.991 0.569 0.763 7e-99
O22818405 Probable polygalacturonas no no 0.986 0.550 0.620 1e-75
P49063444 Exopolygalacturonase clon no no 0.982 0.5 0.491 6e-53
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.969 0.580 0.479 2e-52
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.964 0.496 0.466 8e-52
O23147431 Polygalacturonase ADPG1 O no no 0.942 0.494 0.479 6e-51
P24548362 Exopolygalacturonase (Fra N/A no 0.982 0.613 0.455 1e-50
Q39786407 Polygalacturonase OS=Goss N/A no 0.986 0.547 0.437 3e-50
P05117457 Polygalacturonase-2 OS=So N/A no 0.964 0.477 0.459 1e-49
Q39766407 Polygalacturonase OS=Goss N/A no 0.986 0.547 0.433 2e-49
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  359 bits (922), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 171/224 (76%), Positives = 193/224 (86%)

Query: 1   MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGAT 60
           MFHIVIN   +V++QGV+VS +G SPNTDGIHVQ SSGVTIL+SKI TGDDCVS+GPG +
Sbjct: 170 MFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTS 229

Query: 61  NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFAR 120
           NLWIE VACGPGHGISIGSLGKEQ+EAGVQNVTV +VTF+GTQNG+RIKSWGR S GFAR
Sbjct: 230 NLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFAR 289

Query: 121 NILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDC 180
           NILFQHA M NV+NPI+IDQ+YCPDN  CPGQ SGV+ISDV Y+DIHGTSATEV VK DC
Sbjct: 290 NILFQHATMVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDC 349

Query: 181 SSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCL 224
           S K+PC  I LEDVKL YKNQ AE+SC++ADG+  G V P SCL
Sbjct: 350 SPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
147667130213 polygalacturonase, partial [Citrus unshi 0.929 0.985 0.957 1e-112
255576396 393 Polygalacturonase precursor, putative [R 0.991 0.569 0.834 1e-106
359478229 389 PREDICTED: polygalacturonase-like [Vitis 0.986 0.573 0.807 1e-103
224117746 396 predicted protein [Populus trichocarpa] 0.991 0.565 0.812 1e-103
255576398 392 Polygalacturonase precursor, putative [R 0.991 0.571 0.781 1e-100
354549145 398 polygalacturonase [Pyrus pyrifolia] gi|3 0.991 0.562 0.790 1e-100
51507375 398 polygalacturonase [Pyrus communis] 0.991 0.562 0.790 1e-100
87242603 393 polygalacturonase [Prunus domestica subs 0.991 0.569 0.781 1e-100
157313320 393 endopolygalacturonase [Prunus persica] 0.991 0.569 0.776 2e-99
3747093 393 endopolygalacturonase [Prunus persica] g 0.991 0.569 0.776 2e-99
>gi|147667130|gb|ABQ45847.1| polygalacturonase, partial [Citrus unshiu] Back     alignment and taxonomy information
 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/210 (95%), Positives = 205/210 (97%)

Query: 17  VKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGIS 76
           VKVSAAG+SPNTDGIHVQ+SSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGIS
Sbjct: 3   VKVSAAGDSPNTDGIHVQASSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGIS 62

Query: 77  IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPI 136
           IGSLGKEQQ+AGVQNVT TSVTFTGTQNGVRIKSWGRTS GFARNILFQHALMNNVDNPI
Sbjct: 63  IGSLGKEQQKAGVQNVTATSVTFTGTQNGVRIKSWGRTSSGFARNILFQHALMNNVDNPI 122

Query: 137 IIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 196
           IIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL
Sbjct: 123 IIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 182

Query: 197 IYKNQPAEASCTNADGSASGFVLPNSCLKT 226
            Y NQPAEASCTNADGSASG VLPNSCLK+
Sbjct: 183 SYNNQPAEASCTNADGSASGVVLPNSCLKS 212

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359478229|ref|XP_002279845.2| PREDICTED: polygalacturonase-like [Vitis vinifera] gi|147783621|emb|CAN68142.1| hypothetical protein VITISV_035659 [Vitis vinifera] gi|296084359|emb|CBI24747.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117746|ref|XP_002331621.1| predicted protein [Populus trichocarpa] gi|222874017|gb|EEF11148.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576398|ref|XP_002529091.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531442|gb|EEF33275.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|354549145|gb|AER27668.1| polygalacturonase [Pyrus pyrifolia] gi|354549147|gb|AER27669.1| polygalacturonase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|51507375|emb|CAH18935.1| polygalacturonase [Pyrus communis] Back     alignment and taxonomy information
>gi|87242603|gb|ABD33834.1| polygalacturonase [Prunus domestica subsp. insititia] Back     alignment and taxonomy information
>gi|157313320|gb|ABV32553.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|3747093|gb|AAC64184.1| endopolygalacturonase [Prunus persica] gi|337730173|gb|AEI70577.1| endo-polygalacturonase [Prunus persica] gi|337730175|gb|AEI70578.1| endo-polygalacturonase [Prunus persica] gi|337730177|gb|AEI70579.1| endo-polygalacturonase [Prunus persica] gi|337730179|gb|AEI70580.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query226
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.991 0.577 0.741 2.4e-92
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.982 0.578 0.754 8.1e-92
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.986 0.550 0.620 3.6e-73
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.982 0.563 0.596 2.9e-71
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.982 0.566 0.554 7e-70
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.982 0.563 0.563 1.1e-69
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.982 0.563 0.578 1.8e-69
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.991 0.564 0.531 5.1e-67
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.982 0.498 0.491 1.1e-53
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.982 0.5 0.491 1.5e-53
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
 Identities = 166/224 (74%), Positives = 189/224 (84%)

Query:     1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGAT 60
             MFH+ INGC++VK+ GVKVSA G SPNTDGIHVQSSS V+IL+SKI TGDDCVS+GPG  
Sbjct:   165 MFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTN 224

Query:    61 NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFAR 120
              LWIENVACGPGHGISIGSLGKE  E GVQN+TV + TFTGT+NGVRIKSW R S GFA+
Sbjct:   225 GLWIENVACGPGHGISIGSLGKESVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAK 284

Query:   121 NILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDC 180
             NI FQH +MNNV NPI+IDQNYCP N NCP Q SG+KISDV++ DIHGTSATEVGVKLDC
Sbjct:   285 NIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDC 344

Query:   181 SSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCL 224
             SSK PCTGI ++DVKL Y+N+PA   C++A GS +GF  PNSCL
Sbjct:   345 SSKKPCTGIRIQDVKLTYRNKPATTDCSHAGGSEAGFQRPNSCL 388
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034745001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_72, whole genome shotgun sequence); (389 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-88
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-74
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 9e-69
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-68
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-63
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-54
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-50
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-13
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  266 bits (681), Expect = 1e-88
 Identities = 133/223 (59%), Positives = 163/223 (73%), Gaps = 1/223 (0%)

Query: 3   HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNL 62
           H+ +NGC +V V+ VK+ A G SPNTDG HVQ S+GVT   S + TGDDCV++GPG  N 
Sbjct: 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNF 229

Query: 63  WIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNI 122
            I  +ACGPGHG+SIGSL KE  E GV+NVTV+S  FTG+QNGVRIKSW R S GF RN+
Sbjct: 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNV 289

Query: 123 LFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSS 182
            FQ  +M NV+NPIIIDQNYCP +  CP + SGVKIS V Y++I GTSAT+  +KL CS 
Sbjct: 290 FFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSK 349

Query: 183 KNPCTGISLEDVKLIY-KNQPAEASCTNADGSASGFVLPNSCL 224
            +PCTGI+L+D+KL Y K  PA + C NA G + G + P SCL
Sbjct: 350 SSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 226
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.94
PLN02218431 polygalacturonase ADPG 99.92
PLN02155394 polygalacturonase 99.92
PLN02793443 Probable polygalacturonase 99.91
PLN03003456 Probable polygalacturonase At3g15720 99.91
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.91
PLN03010409 polygalacturonase 99.91
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.9
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.71
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.32
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.78
smart00656190 Amb_all Amb_all domain. 98.63
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.52
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.52
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.4
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.36
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.32
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.27
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.22
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.08
smart00656190 Amb_all Amb_all domain. 97.83
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.78
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.78
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.75
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.74
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.3
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.19
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.13
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.06
PLN02773317 pectinesterase 96.04
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.23
PLN02480343 Probable pectinesterase 94.2
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.11
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.08
PLN02665366 pectinesterase family protein 93.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.42
PLN02170529 probable pectinesterase/pectinesterase inhibitor 93.26
PLN02916502 pectinesterase family protein 93.25
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 93.2
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.01
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 92.94
PLN02682369 pectinesterase family protein 92.92
PLN02432293 putative pectinesterase 92.71
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 92.43
PLN02301548 pectinesterase/pectinesterase inhibitor 92.43
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 92.41
PRK10531422 acyl-CoA thioesterase; Provisional 92.35
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.32
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.26
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.14
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 92.13
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.04
PLN02634359 probable pectinesterase 91.9
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.89
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.88
PLN02304379 probable pectinesterase 91.66
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.59
PLN02313587 Pectinesterase/pectinesterase inhibitor 91.5
PLN02197588 pectinesterase 91.31
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.01
PLN02484587 probable pectinesterase/pectinesterase inhibitor 90.88
PLN02176340 putative pectinesterase 90.63
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 90.58
PLN02314586 pectinesterase 90.54
PLN02497331 probable pectinesterase 90.48
PLN02671359 pectinesterase 90.16
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 90.02
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 89.67
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 88.97
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 88.54
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 88.51
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 86.88
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 85.88
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 84.96
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=3.3e-53  Score=381.53  Aligned_cols=224  Identities=45%  Similarity=0.770  Sum_probs=204.7

Q ss_pred             CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251            1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL   80 (226)
Q Consensus         1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~   80 (226)
                      |||+++.+|+||+|++++|.+|..++||||||+.+|+||+|+||+|.++||||++|+|++||+|+||+|..+|||+|||+
T Consensus       161 ~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSl  240 (456)
T PLN03003        161 MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSL  240 (456)
T ss_pred             cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeec
Confidence            79999999999999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCC--CCCCCCCceEE
Q 027251           81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNG--NCPGQASGVKI  158 (226)
Q Consensus        81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~--~~~~~~~~~~i  158 (226)
                      |++...+.|+||+|+||++.++.+|+||||++| ++|.|+||+|+||+|+++.+||.|+++|++...  .+...++.+.|
T Consensus       241 g~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~I  319 (456)
T PLN03003        241 GKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEV  319 (456)
T ss_pred             cCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEE
Confidence            876555679999999999999999999999988 689999999999999999999999999975422  12233457899


Q ss_pred             EeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC----CCcceeeeecccCCcceeeCCCCCC
Q 027251          159 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN----QPAEASCTNADGSASGFVLPNSCLK  225 (226)
Q Consensus       159 ~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~----~~~~~~C~~~~~~~~~~~~~~~~~~  225 (226)
                      +||+|+||+++.....++.|.|+++.||+||+|+||+++.+.    ..+.+.|.|++|...++++|+||++
T Consensus       320 snI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~  390 (456)
T PLN03003        320 SKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE  390 (456)
T ss_pred             EeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence            999999999987767789999999999999999999998763    2367999999999999999999987

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 7e-18
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-14
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-12
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-12
1nhc_A336 Structural Insights Into The Processivity Of Endopo 2e-12
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-10
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-10
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-08
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 5e-05
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 6e-05
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 102/201 (50%), Gaps = 20/201 (9%)
Query: 2   FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSV----GP 57
           FH+V +  +        +     + NTDGI   SS  +TI  S I TGDD V++    G 
Sbjct: 175 FHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR 234
Query: 58  GAT-NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSG 116
             T N+ I +   G GHG+SIGS     +  GV NVTV  +   GT NG+RIKS  +++ 
Sbjct: 235 AETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAA 288
Query: 117 GFARNILFQHALMNNVDNPIIIDQNYCPDNG-NCPGQASGVKISDVIYQDIHGTSATEVG 175
           G    + + + +M NV  PI+ID  Y    G N P        SD+ ++D+  TS T+  
Sbjct: 289 GVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGV 340
Query: 176 VKLDCSSKNPCTGISLEDVKL 196
           V L+  +      +++++VKL
Sbjct: 341 VVLNGENAKKPIEVTMKNVKL 361
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query226
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-81
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 3e-78
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 5e-74
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-73
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 4e-73
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 5e-72
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 5e-69
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-67
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 6e-61
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-59
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 5e-15
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-11
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 6e-11
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-10
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  247 bits (633), Expect = 3e-81
 Identities = 55/230 (23%), Positives = 105/230 (45%), Gaps = 14/230 (6%)

Query: 1   MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGAT 60
            FH  ++ C+D +V  + +   G     DGI V  S+ + + D ++   D+CV+V   A 
Sbjct: 150 AFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPAN 207

Query: 61  NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFAR 120
           N+ +E++ C    G ++GSLG    +  V ++   +V    +     IKS G +  G   
Sbjct: 208 NILVESIYCNWSGGCAMGSLG---ADTDVTDIVYRNVYTWSSNQMYMIKSNGGS--GTVS 262

Query: 121 NILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTS---ATEVGVK 177
           N+L ++ + +     + ID  +            GV+++++  ++  GT    AT   ++
Sbjct: 263 NVLLENFIGHGNAYSLDIDGYWSSMTAVAG---DGVQLNNITVKNWKGTEANGATRPPIR 319

Query: 178 LDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLKT 226
           + CS   PCT ++LED+ +  ++       C +A GS       +S    
Sbjct: 320 VVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYCLKDSSSHTSY 369
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.96
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.96
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.95
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.93
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.93
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.93
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.93
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.92
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.92
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.91
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.9
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.86
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.86
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.85
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.85
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.81
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.79
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.63
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.53
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.5
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.45
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.28
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.17
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.1
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.56
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.45
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.41
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.34
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.33
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.3
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.28
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.21
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.17
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.06
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.84
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.78
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.75
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.72
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 97.71
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.66
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.65
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.57
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.56
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.34
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.26
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.07
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.01
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.81
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.68
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.67
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.47
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.28
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.95
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.94
2inu_A410 Insulin fructotransferase; right-handed parallel b 95.31
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.79
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.16
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 92.18
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 91.65
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 91.4
3riq_A543 Tailspike protein; right handed beta-helix, endorh 90.84
2xc1_A666 Bifunctional tail protein; hydrolase, endoglycosid 90.15
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 86.51
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 82.6
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 80.31
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=2.9e-43  Score=310.61  Aligned_cols=205  Identities=28%  Similarity=0.493  Sum_probs=182.2

Q ss_pred             CcEEEEEceecEEEEeEEEEcCC-C-----------CCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeE
Q 027251            1 MFHIVINGCNDVKVQGVKVSAAG-E-----------SPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVA   68 (226)
Q Consensus         1 ~w~i~~~~~~nV~I~~i~i~~~~-~-----------~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~   68 (226)
                      +|++++.+|+||+|++++|.++. +           .+|+||||+.+|+||+|+||+|.++||||++|+ ++||+|+||+
T Consensus       127 ~~~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks-g~nI~i~n~~  205 (349)
T 1hg8_A          127 VHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS-GTNIVVSNMY  205 (349)
T ss_dssp             SEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS-EEEEEEEEEE
T ss_pred             CceEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEecCCCeEEeeC-CeEEEEEeEE
Confidence            69999999999999999999852 2           589999999999999999999999999999999 6999999999


Q ss_pred             EcCCceeEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCC-ccEEEEeeeCCCCC
Q 027251           69 CGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVD-NPIIIDQNYCPDNG  147 (226)
Q Consensus        69 ~~~~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~-~~i~i~~~y~~~~~  147 (226)
                      |+.+|||+|||+|++ +.+.++||+|+||+|.++.+|++||++++ ++|.|+||+|+||+|+++. +||.|++.|.+.. 
T Consensus       206 ~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~~~~GirIKt~~g-~~G~v~nI~~~ni~~~~v~~~~i~i~~~Y~~~~-  282 (349)
T 1hg8_A          206 CSGGHGLSIGSVGGK-SDNVVDGVQFLSSQVVNSQNGCRIKSNSG-ATGTINNVTYQNIALTNISTYGVDVQQDYLNGG-  282 (349)
T ss_dssp             EESSCCEEEEEESSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETT-CCEEEEEEEEEEEEEEEEEEEEEEEEEEECSSS-
T ss_pred             EeCCcceEEcccccc-ccCCEEEEEEEEEEEECCCcEEEEEecCC-CCccccceEEEEEEEEccccccEEEEeeccCCC-
Confidence            999999999999876 46789999999999999999999999987 7899999999999999997 6999999997632 


Q ss_pred             CCCCCCCceEEEeEEEEeEEEeccC-ceeEEEeccCCCCeecEEEEeEEEEeCCCCcceeeeeccc
Q 027251          148 NCPGQASGVKISDVIYQDIHGTSAT-EVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADG  212 (226)
Q Consensus       148 ~~~~~~~~~~i~nI~~~ni~~~~~~-~~~~~i~~~~~~~~~ni~f~nv~i~~~~~~~~~~C~~~~~  212 (226)
                      .+..+.+.+.|+||+|+||+++... ..+++|.|. +.||+||+|+||+++..  .....|.|+.+
T Consensus       283 ~~~~p~~~~~i~~I~~~ni~gt~~~~~~~v~i~c~-~~~c~ni~~~nv~i~~~--~~~~~C~n~~~  345 (349)
T 1hg8_A          283 PTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCG-DGSCSGFTFSGNAITGG--GKTSSCNYPTN  345 (349)
T ss_dssp             BCSCCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-SSCEEEEEEESCEEECC--SSCCEECSSSS
T ss_pred             CCCcccCCceEEEEEEEeEEEEeCCCCEEEEEEeC-CCcCcCEEEEeEEEEcC--CCCeeeeCCCC
Confidence            1212234689999999999998765 568999998 68999999999999853  34578999886
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 226
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-51
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-48
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-47
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 9e-46
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-44
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 8e-40
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 9e-40
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-39
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  169 bits (429), Expect = 3e-51
 Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 14/220 (6%)

Query: 1   MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGAT 60
            FH  ++ C+D +V  + +   G     DGI V  S+ + + D ++   D+CV+V   A 
Sbjct: 150 AFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPAN 207

Query: 61  NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFAR 120
           N+ +E++ C    G ++GSLG    +  V ++   +V    +     IKS G +  G   
Sbjct: 208 NILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNVYTWSSNQMYMIKSNGGS--GTVS 262

Query: 121 NILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTS---ATEVGVK 177
           N+L ++ + +     + ID  +            GV+++++  ++  GT    AT   ++
Sbjct: 263 NVLLENFIGHGNAYSLDIDGYWSSMTAVAG---DGVQLNNITVKNWKGTEANGATRPPIR 319

Query: 178 LDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASG 216
           + CS   PCT ++LED+ +  ++       C +A GS   
Sbjct: 320 VVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGYC 359
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query226
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.96
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.93
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.92
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.92
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.91
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.9
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.88
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.86
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.68
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.66
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.98
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.93
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.76
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.57
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.53
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.5
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.46
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.14
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.95
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.63
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.58
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.85
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.84
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 94.04
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.1
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.32
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 90.25
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 81.73
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=8.7e-46  Score=322.95  Aligned_cols=205  Identities=25%  Similarity=0.468  Sum_probs=184.0

Q ss_pred             CcEEEEEceecEEEEeEEEEcCC----CCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeE
Q 027251            1 MFHIVINGCNDVKVQGVKVSAAG----ESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGIS   76 (226)
Q Consensus         1 ~w~i~~~~~~nV~I~~i~i~~~~----~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~   76 (226)
                      +|++++.+|+||+|+|++|.++.    +++|+||||+.+|+||+|+||+|.++||||++|+ ++||+|+||+|..+||++
T Consensus       127 ~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks-~~ni~i~n~~c~~ghG~s  205 (339)
T d1ia5a_         127 VQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS-GENIYFSGGYCSGGHGLS  205 (339)
T ss_dssp             SCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS-EEEEEEESCEEESSSCEE
T ss_pred             ceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC-ccEEEEEEeEEeccccce
Confidence            79999999999999999999863    4689999999999999999999999999999999 789999999999999999


Q ss_pred             EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCC-CccEEEEeeeCCCCCCCCCCCCc
Q 027251           77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV-DNPIIIDQNYCPDNGNCPGQASG  155 (226)
Q Consensus        77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~  155 (226)
                      +||.|+. +.+.++||+|+||++.++.+|+|||++++ ++|.|+||+|+||+|+++ ++||.|+++|.+...   .++..
T Consensus       206 igslG~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~  280 (339)
T d1ia5a_         206 IGSVGGR-SDNTVKNVTFVDSTIINSDNGVRIKTNID-TTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTG  280 (339)
T ss_dssp             EEEECSS-SCCEEEEEEEEEEEEESCSEEEEEEEETT-CCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS---CCCSS
T ss_pred             ecccccC-ccccEEEEEEECCcccCCcceeEEeeeCC-CCEEEEEEEEEEEEEeccccccEEEEeecCCCCC---CCCCC
Confidence            9998865 35789999999999999999999999988 789999999999999998 579999999976422   23456


Q ss_pred             eEEEeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCCCCcceeeeecccC
Q 027251          156 VKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGS  213 (226)
Q Consensus       156 ~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~~~~~~~C~~~~~~  213 (226)
                      ++|+||+|+||+++.....+..+.|.++.||+||+|+||+++.  +.+...|+|+++.
T Consensus       281 v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg--~~~~~~C~nv~~~  336 (339)
T d1ia5a_         281 VPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSG--GKTSSKCTNVPSG  336 (339)
T ss_dssp             SCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEES--SBCCSCCBSCCTT
T ss_pred             cEEEeEEEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcC--CCcceEeECCCcc
Confidence            7899999999999887766888889899999999999999973  3567889999874
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure