Citrus Sinensis ID: 027270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MSKLPKKPYLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK
ccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccEEEEEEEEccEEEEEEccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEccccccHHHHHHHccccccccccccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccEEEEEEEccc
cccccccccHHHHHHHHHHHHHHcHHHcccHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccEEEEEEcccEcccccccccccccEEEEcccccccccHHHHHHHHHcccEEEEccEEccEEHHHHHHccHHHccccccccccEEEEEEccccEEEEEEccccHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEEEEEEccc
msklpkkpylMVFGKRMNLFFKKVFQILENNESLLVAGFTLLlggwqdgaTAVCIWILGRTVFVANIGDAKAVVARSsivdgsnnhldelSSLKAIVVTRVHKAIYPQERARIQksggtvssngrlqgrlevsrafgdrqfkkfgvvatpdihsfevterdhFIILgcdglwgvfgpsDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK
msklpkkpylMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSivdgsnnhldelsslkaivVTRVHKAIypqerariqksggtvssngrlqGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLkeglsvtavsrrlvreavlerrckdnctaIVIIFRHK
MSKLPKKPYLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTavsrrlvreavlerrCKDNCTAIVIIFRHK
********YLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQ*********************LEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFR**
********YLMVFGKRMNLFFKKVFQILENNESLL***********QDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK
MSKLPKKPYLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK
MSKLPKKPYLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSKLPKKPYLMVFGKRMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
Q9LMT1351 Probable protein phosphat yes no 0.8 0.512 0.788 3e-81
Q0J2R1367 Probable protein phosphat yes no 0.804 0.493 0.734 6e-77
Q9H0C8392 Integrin-linked kinase-as yes no 0.746 0.428 0.371 3e-28
Q0IIF0370 Integrin-linked kinase-as yes no 0.728 0.443 0.374 3e-28
Q9Z1Z6392 Integrin-linked kinase-as yes no 0.746 0.428 0.366 8e-28
Q8R0F6392 Integrin-linked kinase-as yes no 0.746 0.428 0.366 8e-28
Q9SLA1392 Probable protein phosphat no no 0.844 0.484 0.352 7e-26
O15743975 Protein spalten OS=Dictyo yes no 0.751 0.173 0.355 3e-22
Q3EAF9384 Probable protein phosphat no no 0.702 0.411 0.357 5e-22
Q7K4Q5662 Probable protein phosphat yes no 0.733 0.249 0.317 2e-21
>sp|Q9LMT1|P2C08_ARATH Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 160/180 (88%)

Query: 44  GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 103
           GGWQDGATAVC+WIL + VFVANIGDAKAV+ARSS  +   NH +  + LKAIV+TR HK
Sbjct: 170 GGWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHK 229

Query: 104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHF 163
           AIYPQER+RIQKSGG +SSNGRLQGRLEVSRAFGDR FKKFGV ATPDIH+FE+TER++F
Sbjct: 230 AIYPQERSRIQKSGGVISSNGRLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENF 289

Query: 164 IILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFR 223
           +ILGCDGLW VFGPSDAV FVQKLLKEGL V+ VSRRLV+EAV ERRCKDNCTAIVI+F+
Sbjct: 290 MILGCDGLWEVFGPSDAVGFVQKLLKEGLHVSTVSRRLVKEAVKERRCKDNCTAIVIVFK 349

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q0J2R1|P2C67_ORYSJ Probable protein phosphatase 2C 67 OS=Oryza sativa subsp. japonica GN=Os09g0314400 PE=2 SV=1 Back     alignment and function description
>sp|Q9H0C8|ILKAP_HUMAN Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1 Back     alignment and function description
>sp|Q0IIF0|ILKAP_BOVIN Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1Z6|ILKAP_RAT Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1 Back     alignment and function description
>sp|Q8R0F6|ILKAP_MOUSE Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1 Back     alignment and function description
>sp|Q9SLA1|P2C22_ARATH Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1 Back     alignment and function description
>sp|O15743|SPNA_DICDI Protein spalten OS=Dictyostelium discoideum GN=spnA PE=1 SV=1 Back     alignment and function description
>sp|Q3EAF9|P2C49_ARATH Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1 Back     alignment and function description
>sp|Q7K4Q5|Y0417_DROME Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
224133162266 predicted protein [Populus trichocarpa] 0.857 0.725 0.811 2e-89
225456039 378 PREDICTED: probable protein phosphatase 0.853 0.507 0.805 2e-86
449497544 348 PREDICTED: probable protein phosphatase 0.862 0.557 0.766 5e-84
357500131321 hypothetical protein MTR_6g081850 [Medic 0.857 0.601 0.765 2e-83
449439101 348 PREDICTED: probable protein phosphatase 0.862 0.557 0.761 2e-83
357500133225 hypothetical protein MTR_6g081850 [Medic 0.857 0.857 0.765 5e-83
297844754 341 hypothetical protein ARALYDRAFT_312763 [ 0.8 0.527 0.788 6e-80
18394565 351 putative protein phosphatase 2C 8 [Arabi 0.8 0.512 0.788 2e-79
16226856 351 At1g18030/T10F20_3 [Arabidopsis thaliana 0.8 0.512 0.788 2e-79
388493824225 unknown [Lotus japonicus] 0.853 0.853 0.743 2e-79
>gi|224133162|ref|XP_002321498.1| predicted protein [Populus trichocarpa] gi|222868494|gb|EEF05625.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 180/196 (91%), Gaps = 3/196 (1%)

Query: 29  ENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLD 88
           + +ESLL    +   GGWQDGATAVC+W+LG+ VF+ANIGDAKAV+ARSSI+DGS NH D
Sbjct: 73  KTDESLLQESTS---GGWQDGATAVCVWVLGQKVFIANIGDAKAVLARSSIIDGSQNHPD 129

Query: 89  ELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVA 148
            +S LKAIV+TR HKAIYPQERARIQK+GG+VSSNGRLQGRLEVSRAFGDRQFKK GVVA
Sbjct: 130 GVSPLKAIVLTREHKAIYPQERARIQKAGGSVSSNGRLQGRLEVSRAFGDRQFKKVGVVA 189

Query: 149 TPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLE 208
           TPDIHSF++T+R+HFIILGCDGLWGVFGPSDAVEFVQKLLKEGL+V AVSRRLVREAVLE
Sbjct: 190 TPDIHSFDLTDREHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLTVAAVSRRLVREAVLE 249

Query: 209 RRCKDNCTAIVIIFRH 224
           RRCKDNCTAI+I+F+H
Sbjct: 250 RRCKDNCTAIIIVFKH 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456039|ref|XP_002277457.1| PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera] gi|297734261|emb|CBI15508.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449497544|ref|XP_004160432.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357500131|ref|XP_003620354.1| hypothetical protein MTR_6g081850 [Medicago truncatula] gi|355495369|gb|AES76572.1| hypothetical protein MTR_6g081850 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449439101|ref|XP_004137326.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357500133|ref|XP_003620355.1| hypothetical protein MTR_6g081850 [Medicago truncatula] gi|355495370|gb|AES76573.1| hypothetical protein MTR_6g081850 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844754|ref|XP_002890258.1| hypothetical protein ARALYDRAFT_312763 [Arabidopsis lyrata subsp. lyrata] gi|297336100|gb|EFH66517.1| hypothetical protein ARALYDRAFT_312763 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394565|ref|NP_564045.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] gi|226739232|sp|Q9LMT1.2|P2C08_ARATH RecName: Full=Probable protein phosphatase 2C 8; Short=AtPP2C08 gi|109946401|gb|ABG48379.1| At1g18030 [Arabidopsis thaliana] gi|332191544|gb|AEE29665.1| putative protein phosphatase 2C 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16226856|gb|AAL16282.1|AF428352_1 At1g18030/T10F20_3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388493824|gb|AFK34978.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TAIR|locus:2194035351 AT1G18030 [Arabidopsis thalian 0.8 0.512 0.722 1.3e-66
UNIPROTKB|Q0IIF0370 ILKAP "Integrin-linked kinase- 0.6 0.364 0.406 5.2e-26
UNIPROTKB|F1SIU8392 ILKAP "Uncharacterized protein 0.6 0.344 0.406 5.2e-26
UNIPROTKB|F1SJH8293 LOC100737148 "Uncharacterized 0.6 0.460 0.406 5.2e-26
UNIPROTKB|E1BYA9392 ILKAP "Uncharacterized protein 0.6 0.344 0.393 1.8e-25
UNIPROTKB|E2RS11393 ILKAP "Uncharacterized protein 0.6 0.343 0.4 2.2e-25
UNIPROTKB|Q9H0C8392 ILKAP "Integrin-linked kinase- 0.6 0.344 0.4 2.2e-25
MGI|MGI:1914694392 Ilkap "integrin-linked kinase- 0.6 0.344 0.4 2.2e-25
RGD|620128392 Ilkap "integrin-linked kinase- 0.6 0.344 0.4 2.2e-25
UNIPROTKB|Q9Z1Z6392 Ilkap "Integrin-linked kinase- 0.6 0.344 0.4 2.2e-25
TAIR|locus:2194035 AT1G18030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 130/180 (72%), Positives = 147/180 (81%)

Query:    44 GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 103
             GGWQDGATAVC+WIL + VFVANIGDAKAV+ARSS  +   NH +  + LKAIV+TR HK
Sbjct:   170 GGWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHK 229

Query:   104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHF 163
             AIYPQER+RIQKSGG +SSNGRLQGRLEVSRAFGDR FKKFGV ATPDIH+FE+TER++F
Sbjct:   230 AIYPQERSRIQKSGGVISSNGRLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENF 289

Query:   164 IILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTXXXXXXXXXXXXXXXCKDNCTAIVIIFR 223
             +ILGCDGLW VFGPSDAV FVQKLLKEGL V+               CKDNCTAIVI+F+
Sbjct:   290 MILGCDGLWEVFGPSDAVGFVQKLLKEGLHVSTVSRRLVKEAVKERRCKDNCTAIVIVFK 349
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
UNIPROTKB|Q0IIF0 ILKAP "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIU8 ILKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJH8 LOC100737148 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYA9 ILKAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS11 ILKAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0C8 ILKAP "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914694 Ilkap "integrin-linked kinase-associated serine/threonine phosphatase 2C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620128 Ilkap "integrin-linked kinase-associated serine/threonine phosphatase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z1Z6 Ilkap "Integrin-linked kinase-associated serine/threonine phosphatase 2C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LMT1P2C08_ARATH3, ., 1, ., 3, ., 1, 60.78880.80.5128yesno
Q0J2R1P2C67_ORYSJ3, ., 1, ., 3, ., 1, 60.73480.80440.4931yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XV0849
hypothetical protein (266 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 4e-48
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 3e-42
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 5e-41
PLN03145365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 3e-31
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 1e-23
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-17
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  158 bits (401), Expect = 4e-48
 Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 22/202 (10%)

Query: 21  FKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIV 80
            +K F  L  +E +L           + G TAV   I G  ++VAN+GD++AV+ R+   
Sbjct: 75  LRKAF--LRADEEILEE-AQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG-- 129

Query: 81  DGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQ 140
                        +A+ +T+ HK +  +ER RI+K+GG VS NGR+ G L V+RA GD  
Sbjct: 130 -------------EAVQLTKDHKPVNEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFD 175

Query: 141 FKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRR 200
            K  GV A PD+   ++TE D F+IL  DGLW V    +AV+ V+  L +   +   ++ 
Sbjct: 176 LK-PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKE-DLQEAAQE 233

Query: 201 LVREAVLERRCKDNCTAIVIIF 222
           LV  A L R   DN T +V+  
Sbjct: 234 LVDLA-LRRGSHDNITVVVVRL 254

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
KOG0699542 consensus Serine/threonine protein phosphatase [Si 100.0
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.97
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.96
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.93
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.84
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.73
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.4
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.24
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.18
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.12
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 97.48
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-41  Score=294.37  Aligned_cols=188  Identities=36%  Similarity=0.650  Sum_probs=163.9

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270           16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA   95 (225)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~   95 (225)
                      .+.+.+.++|.  .++.++.+..  .......+|||++++++.++++|||||||||+|+++.+               ++
T Consensus       138 ~~~~al~~af~--~~d~~~~~~~--~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~  198 (365)
T PLN03145        138 EIEKVVSSAFL--QTDTAFAEAC--SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KA  198 (365)
T ss_pred             hHHHHHHHHHH--HHhHHHHhhh--ccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eE
Confidence            34455666663  6677766543  12234469999999999999999999999999999998               99


Q ss_pred             EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCC------CeeeeCeEEEEEecCCCeEEEEecC
Q 027270           96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCD  169 (225)
Q Consensus        96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~------~v~~~p~i~~~~l~~~~~~lil~SD  169 (225)
                      ++||.||++.++.|++||.+.||.+. .++++|.+++||+|||+.+|..      .++++|++..+++.++|.|||||||
T Consensus       199 ~~LT~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSD  277 (365)
T PLN03145        199 IEMSRDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCD  277 (365)
T ss_pred             EEecCCCCCCCHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCC
Confidence            99999999999999999999999987 6789999999999999877643      4789999999999999999999999


Q ss_pred             ccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270          170 GLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH  224 (225)
Q Consensus       170 Gl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~  224 (225)
                      ||||+++++++++++...+....+++.+|+.|++.|+ .+++.||+|||||+|+.
T Consensus       278 GLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~  331 (365)
T PLN03145        278 GIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS  331 (365)
T ss_pred             ccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence            9999999999999998887766789999999999998 68999999999999974

>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 9e-18
3fxj_A390 Crystal Structure Of Human Protein Phosphatase 1a ( 3e-15
1a6q_A382 Crystal Structure Of The Protein SerineTHREONINE PH 3e-15
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 2e-14
3nmn_B319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 3e-11
3kdj_B316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 3e-11
3jrq_A326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 3e-11
2i44_A324 Crystal Structure Of Serine-Threonine Phosphatase 2 1e-10
3nmv_B324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 1e-10
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 2e-10
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 3e-10
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 3e-10
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 3e-10
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 3e-10
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 3e-10
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 4e-09
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 5e-09
2isn_A364 Crystal Structure Of A Phosphatase From A Pathogeni 9e-07
2pnq_A467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 7e-06
3mq3_A467 Crystal Structure Of Native Bovine Pdp1c Length = 4 8e-06
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 24/160 (15%)
Query: 45  GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 104
           G   G TAV   + G+ ++VAN GD++ VV R+                KA+ ++  HK 
Sbjct: 127 GKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNG---------------KALEMSFDHKP 171
Query: 105 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFK--------KFGVVATPDIHSFE 156
               E  RI+K+GG V+ +GR+ G L +SRA GD  +K        +  + A PDI    
Sbjct: 172 EDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQMISALPDIEKIT 231
Query: 157 VTERDHFIILGCDGLWGVFGPSDAVEFVQ-KLLKEGLSVT 195
           V   D F++L CDG+W        V+FVQ ++ K G+ ++
Sbjct: 232 VGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLS 271
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From Toxoplasma Gondii Length = 324 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic Strain Toxoplasma Gondii Length = 364 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 9e-57
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 3e-55
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 5e-55
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 5e-55
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 2e-54
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 2e-53
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-51
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 2e-48
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 2e-43
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 3e-43
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-40
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 1e-35
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 9e-33
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 5e-07
1txo_A237 Putative bacterial enzyme; serine/threonine protei 6e-06
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
 Score =  181 bits (461), Expect = 9e-57
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 25/190 (13%)

Query: 44  GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 103
           G  + G+TAV + I  + ++  N GD++AV+ R+                +    T+ HK
Sbjct: 128 GMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNG---------------QVCFSTQDHK 172

Query: 104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFG--------VVATPDIHSF 155
              P+E+ RIQ +GG+V    R+ G L VSRA GD  +K           V   P+++  
Sbjct: 173 PCNPREKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEI 231

Query: 156 EVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNC 215
              E D FIIL CDG+W V    +  E+V+  L+    +  V   +V    L +  +DN 
Sbjct: 232 LRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTC-LHKGSRDNM 290

Query: 216 TAIVIIFRHK 225
           + +++ F ++
Sbjct: 291 SIVLVCFSNE 300
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.97
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.97
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.97
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.96
3rnr_A211 Stage II sporulation E family protein; structural 99.96
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.65
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.56
3f79_A255 Probable two-component response regulator; adaptor 99.4
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.36
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.83
3eq2_A394 Probable two-component response regulator; adaptor 97.52
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-40  Score=287.01  Aligned_cols=189  Identities=30%  Similarity=0.499  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270           16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA   95 (225)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~   95 (225)
                      .+...+.++|.  .+|+.+.+.. ........+|||++++++.++++|+|||||||+|++|++               ++
T Consensus       103 ~~~~~l~~a~~--~~~~~i~~~~-~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g---------------~~  164 (307)
T 2p8e_A          103 NVKNGIRTGFL--KIDEYMRNFS-DLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNG---------------QV  164 (307)
T ss_dssp             HHHHHHHHHHH--HHHHHHHTST-TTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETT---------------EE
T ss_pred             HHHHHHHHHHH--HHHHHHHhhh-hhccCCCCCCCeEEEEEEECCcEEEEEccCcEEEEEECC---------------cc
Confidence            45666777774  7788887764 222334578999999999999999999999999999999               99


Q ss_pred             EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCC--------CeeeeCeEEEEEecCCCeEEEEe
Q 027270           96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILG  167 (225)
Q Consensus        96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~--------~v~~~p~i~~~~l~~~~~~lil~  167 (225)
                      .+||.||++.++.|+.||.+.|+.+. .+|++|.+.+||+|||..+|..        .++++|++..+++.++|+|||||
T Consensus       165 ~~lT~DH~~~~~~E~~rI~~~gg~v~-~~rv~g~l~ltRalGd~~~k~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~  243 (307)
T 2p8e_A          165 CFSTQDHKPCNPREKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILA  243 (307)
T ss_dssp             EEECCCCCTTSHHHHHHHHHTTCCEE-TTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEE
T ss_pred             ccCCCCCCCCCHHHHHHHHHcCCEEE-eCcccCeEeccccccCHHHhcCcccCCCCCeEeccCeEEEEEcCCCCeEEEEE
Confidence            99999999999999999999999987 5799999999999999988753        47899999999999988899999


Q ss_pred             cCccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270          168 CDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH  224 (225)
Q Consensus       168 SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~  224 (225)
                      ||||||+++++++.+++...+....+++.+|+.|++.|+ .+|+.||+||||+++..
T Consensus       244 SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~-~~g~~DNiTvivv~~~~  299 (307)
T 2p8e_A          244 CDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCL-HKGSRDNMSIVLVCFSN  299 (307)
T ss_dssp             CHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HTTCCSCEEEEEEEC--
T ss_pred             CCCcccCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCCeEEEEEECCC
Confidence            999999999999999998876656789999999999997 68999999999999864
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 3e-24
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-08
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 3e-24
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 26/188 (13%)

Query: 44  GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK 103
           G  + G+TAV + I  +  +  N GD++ ++ R+  V                  T+ HK
Sbjct: 120 GADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKV---------------HFFTQDHK 164

Query: 104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFG--------VVATPDIHSF 155
              P E+ RIQ +GG+V    R+ G L VSRA GD  +K           V   P++H  
Sbjct: 165 PSNPLEKERIQNAGGSVM-IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDI 223

Query: 156 EVT-ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDN 214
           E + E D FIIL CDG+W V G  +  +FV+  L+    +  V   +V    L +  +DN
Sbjct: 224 ERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTC-LYKGSRDN 282

Query: 215 CTAIVIIF 222
            + I+I F
Sbjct: 283 MSVILICF 290
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.98
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-42  Score=293.00  Aligned_cols=189  Identities=33%  Similarity=0.541  Sum_probs=167.4

Q ss_pred             hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270           16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA   95 (225)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~   95 (225)
                      .+.+.++++|.  ..++.+.... +.......+|||++++++.++++|+||+||||+|+++++               ++
T Consensus        95 ~~~~al~~a~~--~~~~~~~~~~-~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~---------------~~  156 (295)
T d1a6qa2          95 NVKNGIRTGFL--EIDEHMRVMS-EKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR---------------KV  156 (295)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHH-HHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT---------------EE
T ss_pred             HHHHHHHHHHH--HHHHHHhhhh-hhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc---------------cc
Confidence            34555666663  5666665554 335556779999999999999999999999999999999               99


Q ss_pred             EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCC--------CeeeeCeEEEEEec-CCCeEEEE
Q 027270           96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVT-ERDHFIIL  166 (225)
Q Consensus        96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~--------~v~~~p~i~~~~l~-~~~~~lil  166 (225)
                      ++||.||++.++.|++||...||.+. ..|++|.+.+||++||+.+|..        .++++|+|..+++. ++++||||
T Consensus       157 ~~lT~dH~~~~~~E~~Ri~~~gg~v~-~~r~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~~flvL  235 (295)
T d1a6qa2         157 HFFTQDHKPSNPLEKERIQNAGGSVM-IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIIL  235 (295)
T ss_dssp             EEECCCCCTTSHHHHHHHHHTTCCEE-TTEETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEE
T ss_pred             eeeccccCcccHHHHhhHhhcCCccc-ccccCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccceeEee
Confidence            99999999999999999999999997 7899999999999999998854        48999999999986 45679999


Q ss_pred             ecCccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270          167 GCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH  224 (225)
Q Consensus       167 ~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~  224 (225)
                      |||||||+|+++|++++++..+....+++.+|+.|++.|+ .+++.||+|||||+|.+
T Consensus       236 ~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~-~~gs~DNiTvivv~~~~  292 (295)
T d1a6qa2         236 ACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCL-YKGSRDNMSVILICFPN  292 (295)
T ss_dssp             ECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HTTCCSCEEEEEEECTT
T ss_pred             ecCcccccCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-hcCCCCCeEEEEEeccC
Confidence            9999999999999999999988878899999999999998 69999999999999975
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure