Citrus Sinensis ID: 027293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccHHHHcccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccccEEEcccccccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccc
Coil and Loop (DISEMBL)
mmmattvplpkymnspelslpaskydrrrVGIVVVAACFHKyssafgqklhprcFLVHVAQPYFVNNLKKMSWAIgssvddngfdpsssdssngRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMdniigschpfifaidifptfl
Flexible Loop (DISEMBL)
mmmattvplpkymnspelslpaskydrRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNgfdpsssdssngrtRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Low Complexity Region (SEG)
MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Disordered region (IsUnstruct)
************************YDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIG********************RLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPT**
Disordered Region (DISOPRED)
********LPKYMNSP************RVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPY************************************RVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Disordered Region (DISEMBL)
MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNG**********GRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Disordered Region (DISPRO)
*MMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSV*****DPSSS*SSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O80813	197	Ycf20-like protein OS=Ara	no	no	0.591	0.675	0.407	7e-24
Q9MUL5	116	Uncharacterized protein y	N/A	no	0.466	0.905	0.407	2e-12
Q1XDS2	108	Uncharacterized protein y	N/A	no	0.457	0.953	0.336	4e-10
P51214	108	Uncharacterized protein y	N/A	no	0.457	0.953	0.327	2e-09
P72983	109	Ycf20-like protein OS=Syn	N/A	no	0.462	0.954	0.289	2e-06
Q9MVP1	101	Uncharacterized protein y	N/A	no	0.417	0.930	0.333	2e-06
P48409	83	Uncharacterized protein y	N/A	no	0.32	0.867	0.337	0.0001
P34813	100	Uncharacterized protein y	N/A	no	0.391	0.88	0.294	0.0008

>sp|O80813|YC20L_ARATH Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 7/140 (5%)

Query: 69  KKMSWAI--GSSV---DDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTK 123
           +K+++A+  GSS+      G + +   +  G TRL R+  A   ++  +I   RK+FP K
Sbjct: 55  RKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMK 114

Query: 124 LLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--ASLRLLSKIRNLI 181
           +   L+GFY A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S     K+++ +
Sbjct: 115 IFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFV 174

Query: 182 TMFNYWKAGLTLGLFLDSFK 201
              N+WKAG+ LGLF+D+FK
Sbjct: 175 VFMNFWKAGVCLGLFVDAFK 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUL5|YCF20_MESVI Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 8/113 (7%)

Query: 95  RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
            TRL          + ++IQ    +FP K+L  L+GF+ AT  ATV GQTGDWD+L A +
Sbjct: 3   NTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGI 62

Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMF------NYWKAGLTLGLFLDSFK 201
            V ++E +G  MY  S + +SK +     F      NY K GL  GLF+D+FK
Sbjct: 63  LVAMIEILGNKMY--SKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

Mesostigma viride (taxid: 41882)

>sp|Q1XDS2|YCF20_PORYE Uncharacterized protein ycf20 OS=Porphyra yezoensis GN=ycf20 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 95  RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
           +TRL          +  ++     +  T L+  L+GF+ +T  +T+ GQTGDW I++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
            V   E    ++Y +  +L  KI     +FN +K G+T GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIKIN----LFNNFKIGITYGLFVDAFK 105

Porphyra yezoensis (taxid: 2788)

>sp|P51214|YCF20_PORPU Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 95  RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
           RT+L      F   + +R+     +    L+  L+GF+ +T  +T+ GQTGDW I++A+L
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
            V  +E +  ++Y        K    I + N  K G+T GLF+D+FK
Sbjct: 63  IVAAIELVSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

Porphyra purpurea (taxid: 2787)

>sp|P72983|YC20L_SYNY3 Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 95  RTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAAL 154
           RTRL  +++    ++    +   +     LL FL GF+  TA AT  GQ   WD++ AA 
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 155 AVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
            ++  E +    YR  +++      ++ +F   K G++  LFL++FK
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAEVLNIF---KMGVSYSLFLEAFK 106

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9MVP1|YCF20_CYACA Uncharacterized protein ycf20 OS=Cyanidium caldarium GN=ycf20 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 106 QTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGAL 165
           QTR+  +I   +    T    FL GF+ ++A +T++ QT +W IL+AA+ + +VE    L
Sbjct: 5   QTRVIKQIN--KTILATCSFIFLFGFFLSSATSTILIQTNEWSILTAAILISIVELFNYL 62

Query: 166 MYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
            ++          N     N  K GL  GLF+D+FK
Sbjct: 63  KHKFQFNDRKSGYNCFFFINLAKLGLLYGLFIDAFK 98

Cyanidium caldarium (taxid: 2771)

>sp|P48409|YCF20_GALSU Uncharacterized protein ycf20 OS=Galdieria sulphuraria GN=ycf20 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 128 LVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYW 187
           L+G + +    T+  QTGDW +   +  + + E I  + Y   ++   K  N+I  FN +
Sbjct: 9   LLGIFSSNLLCTIYTQTGDWSLYLTSCIIALYEIISYISYNQFIKKTHK--NIINCFNGF 66

Query: 188 KAGLTLGLFLDSFK 201
           K GL  GL+LD+FK
Sbjct: 67  KIGLIYGLYLDAFK 80

Galdieria sulphuraria (taxid: 130081)

>sp|P34813|YCF20_AGLNE Uncharacterized protein ycf20 OS=Aglaothamnion neglectum GN=ycf20 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 109 IGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR 168
           IG  +     +   +L+   +G++  T   ++  +TGDW +++A L V + E + AL+Y 
Sbjct: 8   IGQYLYYHINNLSLQLISLFLGYFFCTIICSIPKETGDWGLITALLIVGINETMSALIYS 67

Query: 169 ASLRLLSKIRN--LITMFNYWKAGLTLGLFLDSFK 201
                  K  N  ++   N  K G+  GLF+DSFK
Sbjct: 68  Y-----KKYENNIIVKTINGIKIGIIYGLFVDSFK 97

Aglaothamnion neglectum (taxid: 2765)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
255553945	238	conserved hypothetical protein [Ricinus	0.977	0.924	0.602	8e-72
225453999	217	PREDICTED: ycf20-like protein-like [Viti	0.92	0.953	0.615	7e-67
449454528	221	PREDICTED: ycf20-like protein-like [Cucu	0.888	0.904	0.617	9e-64
449498939	221	PREDICTED: ycf20-like protein-like [Cucu	0.888	0.904	0.612	4e-63
296089191	243	unnamed protein product [Vitis vinifera]	0.866	0.802	0.607	1e-61
356496360	197	PREDICTED: uncharacterized protein LOC10	0.76	0.868	0.668	3e-59
356506255	197	PREDICTED: ycf20-like protein-like [Glyc	0.875	1.0	0.594	7e-54
224063751	152	predicted protein [Populus trichocarpa]	0.666	0.986	0.721	2e-51
115456649	206	Os03g0852600 [Oryza sativa Japonica Grou	0.72	0.786	0.586	3e-50
242037377	204	hypothetical protein SORBIDRAFT_01g00087	0.711	0.784	0.596	4e-50

>gi|255553945|ref|XP_002518013.1| conserved hypothetical protein [Ricinus communis] gi|223542995|gb|EEF44531.1| conserved hypothetical protein [Ricinus communis]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 170/224 (75%), Gaps = 4/224 (1%)

Query: 2   MMATTVPLPKYMNSPELS-LPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60
           +MAT +    Y N P  + LP+ +  R    +V + +C HK   AF  KL+ +   V+VA
Sbjct: 16  LMATVM---TYSNHPTTAKLPSRESLRSHTLVVSLTSCSHKPVCAFAHKLYSQSSHVYVA 72

Query: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120
           +P++ NN ++++W I SS D +G DPSSS  + G TRL+R IQA QT+I ARIQE+RK+ 
Sbjct: 73  EPFWDNNFRRITWQIRSSADSSGLDPSSSGRTRGGTRLLRAIQALQTKIVARIQEIRKNL 132

Query: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180
           P KLLFFLVGFYCATAFATVIGQTGDWDILSAALAV VVEGIGALMYRAS  L + +R+L
Sbjct: 133 PIKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEGIGALMYRASFPLFNNMRSL 192

Query: 181 ITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTF 224
           ITMFNYWKAGL+LGLFLDSFKY++D+++ SC+PF F +DIFP F
Sbjct: 193 ITMFNYWKAGLSLGLFLDSFKYKIDDVLNSCNPFYFEMDIFPVF 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453999|ref|XP_002274644.1| PREDICTED: ycf20-like protein-like [Vitis vinifera]

 Score =  259 bits (661), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 133/216 (61%), Positives = 158/216 (73%), Gaps = 9/216 (4%)

Query: 11  KYMNSP-ELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLK 69
           + + SP  L+  + K+   R  +V +  C HK  ++FG      CF   VAQ   VN  K
Sbjct: 10  RMVASPYHLTHASPKWVSSRYPVVGIVTCLHK--TSFGL-----CFF-RVAQLSLVNTSK 61

Query: 70  KMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLV 129
           +M W++ SSVD N  DP+ ++ ++GRTRL+RVIQ  Q ++  RI ELRKD P K+LFFLV
Sbjct: 62  RMVWSVRSSVDGNSLDPTPTNGTDGRTRLVRVIQGIQIKLSTRILELRKDLPMKILFFLV 121

Query: 130 GFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKA 189
           GFYCATAFATVIGQTGDWDILSAALAV VVE IGALMYRAS+ L  K+R LITMFNYWKA
Sbjct: 122 GFYCATAFATVIGQTGDWDILSAALAVFVVELIGALMYRASIHLFDKVRRLITMFNYWKA 181

Query: 190 GLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIFPTFL 225
           GL LGLFLDSFKYEM+NIIGSC+PF F ID FP FL
Sbjct: 182 GLCLGLFLDSFKYEMNNIIGSCNPFNFEIDDFPIFL 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454528|ref|XP_004145006.1| PREDICTED: ycf20-like protein-like [Cucumis sativus] gi|449474824|ref|XP_004154295.1| PREDICTED: ycf20-like protein-like [Cucumis sativus]

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 155/209 (74%), Gaps = 9/209 (4%)

Query: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60
           M + +T P    + SP        Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 5   MRLLSTYPRTSKLQSPN-------YPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 56

Query: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120
           +P  + N KKM+ +I  SV+ N FDP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 57  KPSVLKNFKKMALSIRGSVEGNPFDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 115

Query: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 116 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 175

Query: 181 ITMFNYWKAGLTLGLFLDSFKYEMDNIIG 209
           ITMFNYWKAGL++GLFLDSFK+EMD+I G
Sbjct: 176 ITMFNYWKAGLSMGLFLDSFKFEMDDIFG 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498939|ref|XP_004160676.1| PREDICTED: ycf20-like protein-like [Cucumis sativus]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/209 (61%), Positives = 154/209 (73%), Gaps = 9/209 (4%)

Query: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60
           M + +T P    + SP        Y R RV +  + ACF+      G  LH +C   +V 
Sbjct: 5   MRLLSTYPRTSKLQSPN-------YPRTRVSVPGLVACFYDTYVLHGH-LHHQCCSFYVT 56

Query: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120
           +P  + N KKM+ +I  SV+ N  DP SS+S NGRTRLIR+IQA QT++ ARI ELRK+ 
Sbjct: 57  KPSVLKNFKKMALSIRGSVEGNPLDPPSSNS-NGRTRLIRIIQAIQTKLNARINELRKNL 115

Query: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180
           P K+LFFLVGFY ATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL LL+KI++L
Sbjct: 116 PLKILFFLVGFYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDL 175

Query: 181 ITMFNYWKAGLTLGLFLDSFKYEMDNIIG 209
           ITMFNYWKAGL++GLFLDSFK+EMD+I G
Sbjct: 176 ITMFNYWKAGLSMGLFLDSFKFEMDDIFG 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089191|emb|CBI38894.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (615), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 148/204 (72%), Gaps = 9/204 (4%)

Query: 11  KYMNSP-ELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLK 69
           + + SP  L+  + K+   R  +V +  C HK  ++FG      CF   VAQ   VN  K
Sbjct: 36  RMVASPYHLTHASPKWVSSRYPVVGIVTCLHK--TSFGL-----CFF-RVAQLSLVNTSK 87

Query: 70  KMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLV 129
           +M W++ SSVD N  DP+ ++ ++GRTRL+RVIQ  Q ++  RI ELRKD P K+LFFLV
Sbjct: 88  RMVWSVRSSVDGNSLDPTPTNGTDGRTRLVRVIQGIQIKLSTRILELRKDLPMKILFFLV 147

Query: 130 GFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKA 189
           GFYCATAFATVIGQTGDWDILSAALAV VVE IGALMYRAS+ L  K+R LITMFNYWKA
Sbjct: 148 GFYCATAFATVIGQTGDWDILSAALAVFVVELIGALMYRASIHLFDKVRRLITMFNYWKA 207

Query: 190 GLTLGLFLDSFKYEMDNIIGSCHP 213
           GL LGLFLDSFKYEM+NIIGS  P
Sbjct: 208 GLCLGLFLDSFKYEMNNIIGSLMP 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496360|ref|XP_003517036.1| PREDICTED: uncharacterized protein LOC100306594 [Glycine max]

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/172 (66%), Positives = 137/172 (79%), Gaps = 1/172 (0%)

Query: 31  GIVVVAACFHKYSSAFGQKLHPRCFLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSD 90
           G+  V      Y + FGQK     F    AQP    N K+M W++ SS++D+ F PS+S+
Sbjct: 27  GVSKVGLAVFFYKTTFGQKQCCPSFF-GFAQPCLTVNFKRMIWSVRSSLNDSSFSPSTSN 85

Query: 91  SSNGRTRLIRVIQAFQTRIGARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDIL 150
            SNGRTR+IRVIQ FQT++G++IQE++K+ P KLLFFLVGFYCATAFATVIGQTGDWDIL
Sbjct: 86  GSNGRTRIIRVIQEFQTKLGSKIQEVKKNLPMKLLFFLVGFYCATAFATVIGQTGDWDIL 145

Query: 151 SAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKY 202
           SAALAV VVEGIGALMYRASL L+SK R+LI++FNYWKAGLTLGLFLDSFKY
Sbjct: 146 SAALAVAVVEGIGALMYRASLPLVSKSRSLISLFNYWKAGLTLGLFLDSFKY 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506255|ref|XP_003521902.1| PREDICTED: ycf20-like protein-like [Glycine max]

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 151/202 (74%), Gaps = 5/202 (2%)

Query: 1   MMMATTVPLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLVHVA 60
           M+ ATT+     M S ++   +  Y    V  V +AA F+K  + F QK     F     
Sbjct: 1   MLFATTMRSSSCMTSAQV--KSLDYVGSGVSKVALAAFFYK--TTFCQKQCCPSFF-SFG 55

Query: 61  QPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQELRKDF 120
           QP    + K+M+W++ SS++D+ F PS+S+S+NGRTR+IRVIQ FQT++G++IQE++K+ 
Sbjct: 56  QPCLTFSFKRMTWSVRSSLNDSSFSPSTSNSTNGRTRIIRVIQEFQTKLGSKIQEVKKNL 115

Query: 121 PTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNL 180
           P KL FFLVGFYCATAFATVIGQTGDWDILSAALAV VVEGIGALMYRASL L+ K R+L
Sbjct: 116 PLKLFFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEGIGALMYRASLPLVRKSRSL 175

Query: 181 ITMFNYWKAGLTLGLFLDSFKY 202
           I++FNYWKAGLTLGLFLDSFKY
Sbjct: 176 ISLFNYWKAGLTLGLFLDSFKY 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063751|ref|XP_002301276.1| predicted protein [Populus trichocarpa] gi|222843002|gb|EEE80549.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 126/151 (83%), Gaps = 1/151 (0%)

Query: 53  RCFLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGR-TRLIRVIQAFQTRIGA 111
           +C  VHVA+PY   N ++ +W I SSVD +G DPSSS S  G  TRL+R IQAFQTR+G 
Sbjct: 2   QCSFVHVAEPYLAKNFRRRAWQIKSSVDGSGLDPSSSSSGGGGGTRLVRAIQAFQTRLGV 61

Query: 112 RIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASL 171
           RI+E+RK+ P KLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRAS 
Sbjct: 62  RIREIRKNLPMKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASF 121

Query: 172 RLLSKIRNLITMFNYWKAGLTLGLFLDSFKY 202
             +  IR+++++FNYWKAGLTLGLFLDSFKY
Sbjct: 122 PFVKSIRSIVSVFNYWKAGLTLGLFLDSFKY 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115456649|ref|NP_001051925.1| Os03g0852600 [Oryza sativa Japonica Group] gi|113550396|dbj|BAF13839.1| Os03g0852600, partial [Oryza sativa Japonica Group]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 123/167 (73%), Gaps = 5/167 (2%)

Query: 55  FLVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQ 114
           F +  A P F  N ++M W+I +  DD     S+  S +  TRL   IQ+F +++  +++
Sbjct: 42  FCLMRASPSFRTNSRQMQWSIEAMTDD-----SADQSGDNNTRLFSAIQSFLSKLYGKLK 96

Query: 115 ELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLL 174
           +LRK  P K+LFFL+GFYCATAFATVIGQTGDWDILSA LAV +VEGIGALMYRAS   L
Sbjct: 97  KLRKGLPLKILFFLIGFYCATAFATVIGQTGDWDILSAGLAVAIVEGIGALMYRASFAFL 156

Query: 175 SKIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIF 221
            +IR +IT+FNYWKAGLTLGLFLDSFKYE+D  + SC+PF   I+IF
Sbjct: 157 GRIRKMITIFNYWKAGLTLGLFLDSFKYEVDEFLESCNPFNIDINIF 203

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037377|ref|XP_002466083.1| hypothetical protein SORBIDRAFT_01g000870 [Sorghum bicolor] gi|241919937|gb|EER93081.1| hypothetical protein SORBIDRAFT_01g000870 [Sorghum bicolor]

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 123/166 (74%), Gaps = 6/166 (3%)

Query: 56  LVHVAQPYFVNNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLIRVIQAFQTRIGARIQE 115
           L+    P    + +K+ WAI +  DD+G      D S+  TRL   I++F  ++ A++++
Sbjct: 41  LLRAKSPSLPRHSRKVEWAIRTMSDDSG------DQSSNSTRLFSAIRSFWNKLSAKLKK 94

Query: 116 LRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLRLLS 175
            RK  P K+LFFL+GFYCATAFATVIGQTGDWDILSA LAV VVE IGALMYRAS  LL 
Sbjct: 95  ARKGLPVKILFFLIGFYCATAFATVIGQTGDWDILSAGLAVAVVEVIGALMYRASFALLG 154

Query: 176 KIRNLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSCHPFIFAIDIF 221
           +IRN+IT+FNYWKAGLTLGLFLDSFKYE+D  + SC+PF F I+IF
Sbjct: 155 RIRNMITIFNYWKAGLTLGLFLDSFKYEVDEFLESCNPFNFQINIF 200

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2103645	230	AT3G56830 "AT3G56830" [Arabido	0.671	0.656	0.606	2.1e-45
TAIR|locus:2206305	197	NPQ7 "AT1G65420" [Arabidopsis	0.591	0.675	0.421	1.2e-24

TAIR|locus:2103645 AT3G56830 "AT3G56830" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 94/155 (60%), Positives = 118/155 (76%)

Query:    54 CFLVHVAQPYFVNNLKKMSWA-IGSSVDDNGFDPSSSDSSNGRTR---LIRVIQAFQTRI 109
             C  +H AQP  V + ++MSW  I SSV  + FDP+S  SSN  +R   LI+ IQ  ++++
Sbjct:    36 CHFLHPAQPLLVRHQRRMSWTTIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKL 95

Query:   110 GARIQELRKDFPTKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRA 169
               +IQE++KD P KL F LVGFY ATAF+T IGQTGDWD+LSA LAV+VVE IGALMYRA
Sbjct:    96 LVKIQEIKKDLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRA 155

Query:   170 SLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYEM 204
             S+ L++K+R+ ITMFNYWK GL LGLFLDSFKYE+
Sbjct:   156 SIPLINKMRSTITMFNYWKTGLALGLFLDSFKYEV 190

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2206305 NPQ7 "AT1G65420" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/140 (42%), Positives = 90/140 (64%)

Query:    69 KKMSWAI--GSSVD-DNGFDPS-SSDSSN-GRTRLIRVIQAFQTRIGARIQELRKDFPTK 123
             +K+++A+  GSS+  D+G     + D +  G TRL R+  A   ++  +I   RK+FP K
Sbjct:    55 RKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIAIAGGKQLLGKINSARKNFPMK 114

Query:   124 LLFFLVGFYCATAFATVIGQTGDWDILSAALAVVVVEGIGALMYR--ASLRLLSKIRNLI 181
             +   L+GFY A A AT++GQTGDWD+L A + V  +EGIG LMY+  +S     K+++ +
Sbjct:   115 IFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFV 174

Query:   182 TMFNYWKAGLTLGLFLDSFK 201
                N+WKAG+ LGLF+D+FK
Sbjct:   175 VFMNFWKAGVCLGLFVDAFK 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.140   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.43    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.00u 0.07s 19.07t   Elapsed:  00:00:01
  Total cpu time:  19.00u 0.07s 19.07t   Elapsed:  00:00:01
  Start:  Fri May 10 08:48:02 2013   End:  Fri May 10 08:48:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010196 "nonphotochemical quenching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam04483	60	pfam04483, DUF565, Protein of unknown function (DU	1e-15

>gnl|CDD|218106 pfam04483, DUF565, Protein of unknown function (DUF565)

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 143 QTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFK 201
           QTGDWDIL+AA+ V + E I  L Y  S     +   ++ + N +K GL  GLF+D+FK
Sbjct: 1   QTGDWDILAAAILVAITEIISKLFY--SRPSKKRRSLILELLNLFKIGLIYGLFVDAFK 57

Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF04483	60	DUF565: Protein of unknown function (DUF565); Inte	99.88

>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown

Probab=99.88  E-value=3.3e-23  Score=149.55  Aligned_cols=59  Identities=41%  Similarity=0.757  Sum_probs=54.4

Q ss_pred             cccCchHHHHHHHHHHHHHhhhhhccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHhccc
Q 027293          143 QTGDWDILSAALAVVVVEGIGALMYRASLRLLSKIRNLITMFNYWKAGLTLGLFLDSFKYE  203 (225)
Q Consensus       143 q~g~wD~laA~iiVl~iEvis~l~YR~~~~~~~~~~l~~~lLN~fKIGllYGLFLEAFKL~  203 (225)
                      |+|+|||++|+++|+++|++++++|+++..  .+.+++++++|+||||++||||+||||||
T Consensus         1 Q~g~wD~i~a~~iv~~~E~i~~l~Y~~~~~--~~~~~~~~~lN~~KiGl~YgLfleAFKLG   59 (60)
T PF04483_consen    1 QTGDWDVIAAAIIVLFIEVISRLRYSKPKK--KRKSLLVELLNNFKIGLLYGLFLEAFKLG   59 (60)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhccccc--cccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999763  23557999999999999999999999998

As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 30/233 (12%), Positives = 58/233 (24%), Gaps = 83/233 (35%)

Query: 8   PLPKYMNSPELSLPASKYDRRRVGIVVVAACFHKYSSAFGQKLHPRCFLV--HVAQPYFV 65
               + ++ +L + + + + RR+                  K +  C LV  +V      
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRL---------------LKSKPYENCLLVLLNVQNA--- 256

Query: 66  NNLKKMSWAIGSSVDDNGFDPSSSDSSNGRTRLI--RVIQAFQTRIGARIQELRKDFPTK 123
                   A       N F+ S       +  L+  R  Q       A    +  D  + 
Sbjct: 257 -------KAW------NAFNLSC------KI-LLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 124 LLFFLVGFYCATA---FATVIGQTGDWDILSAALAV--VVVEGIGALMYRASLRLLSKIR 178
                               +      D+    L      +  I              IR
Sbjct: 297 ------TLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAES-----------IR 338

Query: 179 NLITMFNYWKAGLTLGLFLDSFKYEMDNIIGSC----HPFIF-----AIDIFP 222
           + +  ++ WK              ++  II S      P  +      + +FP
Sbjct: 339 DGLATWDNWK---------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00