Citrus Sinensis ID: 027318

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
ccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccEEEEEEcccccccccccEEEEEEEccccccEEEEEEcccccEEcEEEEEEEEEEEEccccEEEEEcccccccEEccHHHHcccccccccccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEcccEEEcccEEEc
cccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEcccEEEEEEEEEccccccHHEHHEHHEccccccEEEEEcccccEccccEEEcccEEEEEcccccEEEEcccccHHccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEccEEEEEEEEEEc
MRAVEVSKRLSRALFSfssysrslpnflpspdchrssgdrdtcllrfpwsatqQRAVKVNashvrpgnvieksgKMYQVIDAEhkqrgrggamMQMELrdidtgnkvslrfgteEAVERVFVEdksftclytendtafviesetfeqlevpldvfGKAGAYLQEGMKVWLQLYDgralsgsipkRVACTIKEihastkgptvtprYRRALLDNGVTVMVSEICKF
mravevskRLSRALFsfssysrslpnflpSPDCHRSSGDRDTCLLRFPWSatqqravkvnashvrpgnvieksgkmyqVIDAEhkqrgrggaMMQMELRDIDTGNKVSLRfgteeavervfvedKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIkeihastkgptvtpryrralldngvtvmvseickf
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
****************************************DTCLLRFPWSATQQRAVKVNASHVRPGNVIE***KMYQVI********************IDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEIC**
************ALFSF*******************************WSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
**************FS**SYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
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MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVSEICKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query225 2.2.26 [Sep-21-2011]
Q2G6X5187 Elongation factor P OS=No yes no 0.724 0.871 0.411 2e-34
A5VAL5187 Elongation factor P OS=Sp yes no 0.724 0.871 0.404 2e-33
B0UJ99188 Elongation factor P OS=Me yes no 0.724 0.867 0.441 4e-33
Q5LU15187 Elongation factor P OS=Ru yes no 0.72 0.866 0.382 2e-32
A9IYN9191 Elongation factor P OS=Ba yes no 0.724 0.853 0.411 2e-32
B8IS61188 Elongation factor P OS=Me yes no 0.724 0.867 0.435 2e-32
Q5NQQ2187 Elongation factor P OS=Zy yes no 0.724 0.871 0.392 2e-32
Q6FYN9190 Elongation factor P OS=Ba yes no 0.724 0.857 0.404 3e-32
Q28M91187 Elongation factor P OS=Ja yes no 0.72 0.866 0.376 6e-32
A7HUY3187 Elongation factor P OS=Pa yes no 0.724 0.871 0.404 1e-31
>sp|Q2G6X5|EFP_NOVAD Elongation factor P OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=efp PE=3 SV=1 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 107/163 (65%)

Query: 57  VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEA 116
           +K++   +RPGN++E    +++V   +H Q G+GGA MQ+E++++  G K ++RF + + 
Sbjct: 1   MKISGVDIRPGNILEYEKGIWKVAKTQHTQPGKGGAFMQVEMKNLIDGRKTNVRFRSADT 60

Query: 117 VERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176
           VERV ++ K F  LY E D    ++ ET++Q+ +P D+ G A A+LQ+GM V L++YD R
Sbjct: 61  VERVRLDTKDFQFLYAEGDDLVFMDVETYDQITLPSDLLGDAAAFLQDGMTVLLEMYDER 120

Query: 177 ALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
            +S  +P++V  TI E  A  KG T +  Y+ A+LDNGV VMV
Sbjct: 121 PISVQLPEQVEATIVEADAVVKGQTASSSYKPAILDNGVRVMV 163
Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)
>sp|A5VAL5|EFP_SPHWW Elongation factor P OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|B0UJ99|EFP_METS4 Elongation factor P OS=Methylobacterium sp. (strain 4-46) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q5LU15|EFP_RUEPO Elongation factor P OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|A9IYN9|EFP_BART1 Elongation factor P OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|B8IS61|EFP_METNO Elongation factor P OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q5NQQ2|EFP_ZYMMO Elongation factor P OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q6FYN9|EFP_BARQU Elongation factor P OS=Bartonella quintana (strain Toulouse) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q28M91|EFP_JANSC Elongation factor P OS=Jannaschia sp. (strain CCS1) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|A7HUY3|EFP_PARL1 Elongation factor P OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=efp PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
297799372257 elongation factor P (EF-P) family protei 0.964 0.844 0.568 7e-68
18416726258 elongation factor P (EF-P) family protei 0.8 0.697 0.655 3e-66
334186934261 elongation factor P (EF-P) family protei 0.791 0.681 0.657 7e-66
224052898190 predicted protein [Populus trichocarpa] 0.746 0.884 0.645 1e-62
255588908216 Elongation factor P, putative [Ricinus c 0.773 0.805 0.637 1e-60
242032603246 hypothetical protein SORBIDRAFT_01g00443 0.76 0.695 0.584 2e-55
226509854246 elongation factor P [Zea mays] gi|195624 0.76 0.695 0.590 3e-55
195643194246 elongation factor P [Zea mays] 0.76 0.695 0.590 3e-55
357114989248 PREDICTED: elongation factor P-like [Bra 0.76 0.689 0.590 4e-55
30103012247 putative translation elongation factor P 0.884 0.805 0.511 2e-54
>gi|297799372|ref|XP_002867570.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] gi|297313406|gb|EFH43829.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 171/234 (73%), Gaps = 17/234 (7%)

Query: 1   MRAVEVSKRLS--RALFSFSSYSRSLPNFLPSPD-----------CHRSSGD--RDTCLL 45
           MR +   KR+S  R+LF+FS+ +   P  L +                ++G   R+T  L
Sbjct: 1   MRGLHHLKRISIVRSLFTFSNTTS--PGALTTRRSLYSLSRLLSSTPNAAGGCYRETPSL 58

Query: 46  RFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGN 105
           + PWSA Q+R VKVNA  +R GNVIE++G+ ++V++AEHKQ+GRGGA +Q+ELRD+DTGN
Sbjct: 59  QSPWSAVQRRGVKVNAIQLRAGNVIERTGRTFRVVEAEHKQQGRGGASIQVELRDVDTGN 118

Query: 106 KVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEG 165
           K++LRFG+EE+VE+VFVE+KSFTCLYTE DTAF+IE  TFEQ+EVPLD+FGKA  YL+E 
Sbjct: 119 KLNLRFGSEESVEKVFVEEKSFTCLYTEGDTAFLIEPNTFEQVEVPLDIFGKAAVYLKEE 178

Query: 166 MKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
           MKV LQLYDGRALS SIPK + CT+ E     KG T  PRY+RALLDNG T+ V
Sbjct: 179 MKVQLQLYDGRALSASIPKHITCTVVETQDPMKGLTSAPRYKRALLDNGSTIQV 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18416726|ref|NP_567743.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|15450784|gb|AAK96663.1| putative protein [Arabidopsis thaliana] gi|20259884|gb|AAM13289.1| putative protein [Arabidopsis thaliana] gi|332659783|gb|AEE85183.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334186934|ref|NP_001190845.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|332659784|gb|AEE85184.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224052898|ref|XP_002297630.1| predicted protein [Populus trichocarpa] gi|222844888|gb|EEE82435.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255588908|ref|XP_002534760.1| Elongation factor P, putative [Ricinus communis] gi|223524618|gb|EEF27623.1| Elongation factor P, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242032603|ref|XP_002463696.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] gi|241917550|gb|EER90694.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226509854|ref|NP_001149082.1| elongation factor P [Zea mays] gi|195624552|gb|ACG34106.1| elongation factor P [Zea mays] Back     alignment and taxonomy information
>gi|195643194|gb|ACG41065.1| elongation factor P [Zea mays] Back     alignment and taxonomy information
>gi|357114989|ref|XP_003559276.1| PREDICTED: elongation factor P-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|30103012|gb|AAP21425.1| putative translation elongation factor P [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query225
TIGR_CMR|SPO_1244187 SPO_1244 "translation elongati 0.72 0.866 0.382 3.3e-31
TIGR_CMR|APH_0547188 APH_0547 "translation elongati 0.715 0.856 0.329 9.7e-25
TIGR_CMR|NSE_0196191 NSE_0196 "translation elongati 0.742 0.874 0.333 2.6e-22
TIGR_CMR|ECH_0777189 ECH_0777 "translation elongati 0.724 0.862 0.310 3.4e-22
TIGR_CMR|CHY_1872185 CHY_1872 "translation elongati 0.715 0.870 0.260 1.1e-16
TIGR_CMR|BA_4421185 BA_4421 "translation elongatio 0.715 0.870 0.267 9.8e-16
TIGR_CMR|CJE_0655189 CJE_0655 "translation elongati 0.693 0.825 0.243 2.7e-13
TIGR_CMR|SO_2328186 SO_2328 "translation elongatio 0.724 0.876 0.265 5.6e-13
TIGR_CMR|DET_0714186 DET_0714 "translation elongati 0.666 0.806 0.258 5e-12
UNIPROTKB|P0A6N4188 efp "protein chain elongation 0.688 0.824 0.283 1.7e-11
TIGR_CMR|SPO_1244 SPO_1244 "translation elongation factor P" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 62/162 (38%), Positives = 105/162 (64%)

Query:    58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV 117
             K+N + +RPGNV+E +G ++  +  +H + G+GGA  Q+ELR++  G+K++ RF + + V
Sbjct:     3 KINGNEIRPGNVLEHNGGLWAAVKVDHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKV 62

Query:   118 ERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 177
             ERV +E K    LY  +     +++ET+EQ+E+P D+ G+   +LQ+GM + ++ Y+  A
Sbjct:    63 ERVRLEQKDQQFLYESDGMLVFMDAETYEQIELPADLLGERRPFLQDGMTILVEFYESEA 122

Query:   178 LSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
             L+ ++P++V C I E     KG T    ++ A+LDNGV VMV
Sbjct:   123 LNATLPQKVTCKIVETEPVVKGQTAANSFKPAVLDNGVKVMV 164
GO:0003746 "translation elongation factor activity" evidence=ISS
GO:0006414 "translational elongation" evidence=ISS
TIGR_CMR|APH_0547 APH_0547 "translation elongation factor P" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0196 NSE_0196 "translation elongation factor P" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0777 ECH_0777 "translation elongation factor P" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1872 CHY_1872 "translation elongation factor P" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4421 BA_4421 "translation elongation factor P" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0655 CJE_0655 "translation elongation factor P" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2328 SO_2328 "translation elongation factor P" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0714 DET_0714 "translation elongation factor P" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6N4 efp "protein chain elongation factor EF-P" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
PRK00529186 PRK00529, PRK00529, elongation factor P; Validated 2e-49
TIGR00038184 TIGR00038, efp, translation elongation factor P 7e-47
COG0231131 COG0231, Efp, Translation elongation factor P (EF- 6e-33
pfam0820758 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-l 4e-15
TIGR02178186 TIGR02178, yeiP, elongation factor P-like protein 4e-15
PRK04542189 PRK04542, PRK04542, elongation factor P; Provision 6e-15
cd0447061 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Trans 3e-13
pfam0113255 pfam01132, EFP, Elongation factor P (EF-P) OB doma 9e-12
PRK14578187 PRK14578, PRK14578, elongation factor P; Provision 9e-12
PRK12426185 PRK12426, PRK12426, elongation factor P; Provision 2e-09
cd0579456 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Trans 2e-04
pfam0928556 pfam09285, Elong-fact-P_C, Elongation factor P, C- 4e-04
>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated Back     alignment and domain information 
 Score =  159 bits (404), Expect = 2e-49
 Identities = 56/162 (34%), Positives = 91/162 (56%)

Query: 58  KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV 117
            ++A+ +R G VIE  G+ Y V++ EH + G+G A ++ +L+++ TG+ V   F   + V
Sbjct: 1   MISANDLRKGLVIEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKV 60

Query: 118 ERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 177
           ER  VE +    LY + D    +++ET+EQ+EVP D  G A  +L+EGM+V +  Y+G  
Sbjct: 61  ERADVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEP 120

Query: 178 LSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
           +S  +P  V   + E     KG T +   + A L+ G  V V
Sbjct: 121 ISVELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQV 162

Length = 186
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P Back     alignment and domain information
>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|203876 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like domain Back     alignment and domain information
>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP Back     alignment and domain information
>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional Back     alignment and domain information
>gnl|CDD|239916 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>gnl|CDD|216318 pfam01132, EFP, Elongation factor P (EF-P) OB domain Back     alignment and domain information
>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional Back     alignment and domain information
>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional Back     alignment and domain information
>gnl|CDD|240220 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 225
PRK12426185 elongation factor P; Provisional 100.0
PRK14578187 elongation factor P; Provisional 100.0
PRK04542189 elongation factor P; Provisional 100.0
TIGR02178186 yeiP elongation factor P-like protein YeiP. This m 100.0
PRK00529186 elongation factor P; Validated 100.0
TIGR00038184 efp translation elongation factor P. function: inv 100.0
COG0231131 Efp Translation elongation factor P (EF-P)/transla 100.0
TIGR00037130 eIF_5A translation initiation factor eIF-5A. Obser 100.0
PRK03999129 translation initiation factor IF-5A; Provisional 100.0
PLN03107159 eukaryotic translation initiation factor 5A; Provi 100.0
cd0447061 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo 99.9
PF0820758 EFP_N: Elongation factor P (EF-P) KOW-like domain; 99.86
PF0113255 EFP: Elongation factor P (EF-P) OB domain; InterPr 99.84
PTZ00328166 eukaryotic initiation factor 5a; Provisional 99.84
cd0446355 S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin 99.72
smart0084156 Elong-fact-P_C Elongation factor P, C-terminal. Th 99.67
cd0579456 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elo 99.67
PF0928556 Elong-fact-P_C: Elongation factor P, C-terminal; I 99.66
KOG3271156 consensus Translation initiation factor 5A (eIF-5A 99.63
cd0446757 S1_aIF5A S1_aIF5A: Archaeal translation Initiation 98.7
COG1499355 NMD3 NMD protein affecting ribosome stability and 98.31
PF0128769 eIF-5a: Eukaryotic elongation factor 5A hypusine, 97.18
cd0446869 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati 93.56
cd0446975 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. 85.3
>PRK12426 elongation factor P; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.6e-68  Score=448.81  Aligned_cols=167  Identities=20%  Similarity=0.392  Sum_probs=165.6

Q ss_pred             eEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEEEEEEEeCCeE
Q 027318           58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA  137 (225)
Q Consensus        58 ~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~qyLY~Dgd~~  137 (225)
                      |+++||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+.|
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGkg~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~   80 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEY   80 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCCCceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeE
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCceeEEEecCcEE
Q 027318          138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTV  217 (225)
Q Consensus       138 ~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K~A~LeTG~~i  217 (225)
                      +|||+|||||++|+++.+||+.+||+|||+|+|.+|+|+||+|+||++|+|+|+||||++|||||++++|||+||||++|
T Consensus        81 ~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kgdTat~~~KpAtLeTG~~V  160 (185)
T PRK12426         81 LFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLELMVSKTDFPGDSLSLSGGAKKALLETGVEV  160 (185)
T ss_pred             EEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCcccCCCcccEEEcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eccccee
Q 027318          218 MVSEICK  224 (225)
Q Consensus       218 ~VP~FI~  224 (225)
                      +||+||+
T Consensus       161 ~VP~FI~  167 (185)
T PRK12426        161 LVPPFVE  167 (185)
T ss_pred             EeCCccc
Confidence            9999997

>PRK14578 elongation factor P; Provisional Back     alignment and domain information
>PRK04542 elongation factor P; Provisional Back     alignment and domain information
>TIGR02178 yeiP elongation factor P-like protein YeiP Back     alignment and domain information
>PRK00529 elongation factor P; Validated Back     alignment and domain information
>TIGR00038 efp translation elongation factor P Back     alignment and domain information
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00037 eIF_5A translation initiation factor eIF-5A Back     alignment and domain information
>PRK03999 translation initiation factor IF-5A; Provisional Back     alignment and domain information
>PLN03107 eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors Back     alignment and domain information
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet [] Back     alignment and domain information
>PTZ00328 eukaryotic initiation factor 5a; Provisional Back     alignment and domain information
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain Back     alignment and domain information
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal Back     alignment and domain information
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology [] Back     alignment and domain information
>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain Back     alignment and domain information
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands [] Back     alignment and domain information
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
1ueb_A184 Crystal Structure Of Translation Elongation Factor 2e-16
1yby_A215 Conserved Hypothetical Protein Cth-95 From Clostrid 2e-14
3a5z_B191 Crystal Structure Of Escherichia Coli Genx In Compl 1e-10
3tre_A191 Structure Of A Translation Elongation Factor P (Efp 1e-07
>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 59  VNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVE 118
           ++ + +RPG  ++  G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E
Sbjct: 2   ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61
Query: 119 RVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLD-VFGKAGAYLQEGMKVWLQLYDGRA 177
            ++VE +    LY E +    ++ ET+EQ  VP   V G    + +EGM     +Y+G+ 
Sbjct: 62  DIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVG--AEFFKEGMTALGDMYEGQP 119
Query: 178 LSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
           +  + P  V   + +     +G TV+   + A L+ G  V V
Sbjct: 120 IKVTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQV 161
>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215 Back     alignment and structure
>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191 Back     alignment and structure
>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From Coxiella Burnetii Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query225
1yby_A215 Translation elongation factor P; conserved hypothe 1e-40
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 5e-40
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 9e-40
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 4e-39
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 9e-36
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 2e-22
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 5e-21
2eif_A136 IF-5A, protein (eukaryotic translation initiation 7e-20
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 2e-10
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 2e-09
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215 Back     alignment and structure
 Score =  137 bits (347), Expect = 1e-40
 Identities = 43/172 (25%), Positives = 85/172 (49%)

Query: 48  PWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKV 107
             S  ++  + ++A   + G   E  G+++QVI+ +H + G+G A ++ +L++I TG  +
Sbjct: 21  STSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATI 80

Query: 108 SLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK 167
              F   + + +  +E K    LY + D  + +++ETFEQL +  D  G A  +++E   
Sbjct: 81  EKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEI 140

Query: 168 VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 219
           V +  + G       P  V   + +     KG T T   + A+++ G ++ V
Sbjct: 141 VKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKV 192
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191 Back     alignment and structure
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184 Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191 Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138 Back     alignment and structure
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
1yby_A215 Translation elongation factor P; conserved hypothe 100.0
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 100.0
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 100.0
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 100.0
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 100.0
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 100.0
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 100.0
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 100.0
2eif_A136 IF-5A, protein (eukaryotic translation initiation 100.0
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 100.0
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 100.0
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 100.0
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 99.61
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Back     alignment and structure
Probab=100.00  E-value=1.5e-70  Score=474.53  Aligned_cols=177  Identities=24%  Similarity=0.432  Sum_probs=157.3

Q ss_pred             ccceeeeceeeEEcCCCCCccEEEECCeEEEEEEeEEeeCCCCCeEeeEEEeeCCCCCEEEEEecCCCcEEeeeEeeeEE
Q 027318           48 PWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSF  127 (225)
Q Consensus        48 ~~~~~~~R~~~i~a~dikkG~~I~~dG~py~Vv~~~h~KpGKG~A~vriklknL~TG~kie~tf~s~dkve~~~ve~k~~  127 (225)
                      -.|++|+|++|++++|||+|++|++||+||+|++++|+|||||+|++|+|+|||+||+++|++|+++|++|.|+++++++
T Consensus        21 ~~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~  100 (215)
T 1yby_A           21 STSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDM  100 (215)
T ss_dssp             ----------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEE
T ss_pred             chhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEE
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeEEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCce
Q 027318          128 TCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYR  207 (225)
Q Consensus       128 qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~~V~l~V~etep~~KGdTat~~~K  207 (225)
                      ||||.|||.|+|||+|||||++|+++.+||+.+||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++|
T Consensus       101 QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~K  180 (215)
T 1yby_A          101 QYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATK  180 (215)
T ss_dssp             EEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEE
T ss_pred             EEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCcEEEccccee
Q 027318          208 RALLDNGVTVMVSEICK  224 (225)
Q Consensus       208 ~A~LeTG~~i~VP~FI~  224 (225)
                      ||+||||++|+||+||+
T Consensus       181 pA~leTG~~v~VP~FI~  197 (215)
T 1yby_A          181 PAIVETGASIKVPLFVN  197 (215)
T ss_dssp             EEEETTSCEEEEETTCC
T ss_pred             cEEEeCCcEEEeCCcEe
Confidence            99999999999999997
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Back     alignment and structure
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Back     alignment and structure
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 225
d1ueba163 b.34.5.2 (A:1-63) Elongation factor P N-terminal d 2e-18
d1ueba263 b.40.4.5 (A:64-126) Elongation factor P middle and 1e-12
d1iz6a169 b.34.5.2 (A:2-70) Eukaryotic initiation translatio 3e-12
d2eifa173 b.34.5.2 (A:1-73) Eukaryotic initiation translatio 6e-10
d1bkba171 b.34.5.2 (A:4-74) Eukaryotic initiation translatio 7e-10
d1ueba358 b.40.4.5 (A:127-184) Elongation factor P middle an 2e-04
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 73.9 bits (182), Expect = 2e-18
 Identities = 16/62 (25%), Positives = 39/62 (62%)

Query: 59  VNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVE 118
           ++ + +RPG  ++  G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E
Sbjct: 2   ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61

Query: 119 RV 120
            +
Sbjct: 62  DI 63
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 Back     information, alignment and structure
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query225
d1ueba263 Elongation factor P middle and C-terminal domains 99.9
d1ueba163 Elongation factor P N-terminal domain {Thermus the 99.9
d1bkba171 Eukaryotic initiation translation factor 5a (eIF5a 99.87
d1iz6a169 Eukaryotic initiation translation factor 5a (eIF5a 99.87
d2eifa173 Eukaryotic initiation translation factor 5a (eIF5a 99.85
d1ueba358 Elongation factor P middle and C-terminal domains 99.68
d1x6oa168 Eukaryotic initiation translation factor 5a (eIF5a 99.58
d1khia176 Woronin body major protein (Hex1) {Filamentous fun 98.95
d2eifa259 C-terminal domain of eukaryotic initiation transla 98.58
d1bkba265 C-terminal domain of eukaryotic initiation transla 98.55
d1iz6a267 C-terminal domain of eukaryotic initiation transla 98.51
d1khia271 C-terminal domain of eIF5a homologue (Hex1) {Filam 80.27
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.90  E-value=2.2e-24  Score=151.73  Aligned_cols=63  Identities=29%  Similarity=0.580  Sum_probs=60.7

Q ss_pred             eEeeeEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhccCCCCEEEEEEECCEEEEEeCCC
Q 027318          121 FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPK  184 (225)
Q Consensus       121 ~ve~k~~qyLY~Dgd~~~FMD~EtyEQi~v~~~~lgd~~~yL~eg~~V~v~~~~g~~i~v~lP~  184 (225)
                      .||+|++||||.||+.|+|||+|||||+.|+++.+|++ +||+|||+|.|.+|+|+||+|+||+
T Consensus         1 ~ve~~~~qyLY~dgd~~~FMd~etyEQi~v~~~~i~~~-~~L~eg~~~~v~~~~~~~i~i~lPT   63 (63)
T d1ueba2           1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPT   63 (63)
T ss_dssp             CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCS
T ss_pred             CccceeEEEEEeCCCeEEEEeCCCccEEEcCHHHcChh-ccccCCCEEEEEEECCEEEEEECCC
Confidence            37999999999999999999999999999999999986 7999999999999999999999996
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure