Citrus Sinensis ID: 027339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILtsqshekdpklPSLLKMLLWAQNQldekaayprindlatatledpai
Flexible Loop (DISEMBL)
mskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFrmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdpkLPSLLKMLLWAQNQLDEKAAYPRINDlatatledpai
Low Complexity Region (SEG)
MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered region (IsUnstruct)
***************NDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI**************LLKMLLWAQNQLDEKAAYPRI*************
Disordered Region (DISOPRED)
*****************VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE**QSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT********KLPSLLKMLLWAQNQLDEKAAYPRINDLATA*LEDP**
Disordered Region (DISEMBL)
MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Disordered Region (DISPRO)
***KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.973	0.956	0.637	1e-79
A7SWD3	225	Glucose-induced degradati	N/A	no	0.964	0.96	0.506	6e-62
Q6PC55	228	Glucose-induced degradati	yes	no	0.968	0.951	0.555	1e-60
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.968	0.951	0.541	1e-60
Q32L52	228	Glucose-induced degradati	yes	no	0.968	0.951	0.532	8e-60
Q9D7M1	228	Glucose-induced degradati	yes	no	0.968	0.951	0.532	2e-59
Q9NWU2	228	Glucose-induced degradati	yes	no	0.968	0.951	0.532	4e-59
Q10446	240	Uncharacterized protein C	yes	no	0.861	0.804	0.354	9e-21
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.406	0.124	0.347	3e-08
Q9PTY5	548	Ran-binding protein 9 OS=	N/A	no	0.464	0.189	0.320	4e-08

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 139/218 (63%), Positives = 171/218 (78%)

Query: 3   KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 62
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 63  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 122
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 123 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 182
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 183 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 220
           +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct: 191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  237 bits (604), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/217 (50%), Positives = 167/217 (76%), Gaps = 1/217 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +  
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKKTQ 186

Query: 186 PKLPSLLKMLLWAQNQLD-EKAAYPRINDLATATLED 221
           PKL ++LK+LLWAQ++L+ +K  +P++ ++A+ T E+
Sbjct: 187 PKLANVLKLLLWAQDELEGKKVKFPKMAEIASGTFEE 223

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/218 (55%), Positives = 166/218 (76%), Gaps = 1/218 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++DL ++ +R+ 
Sbjct: 10  ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIK 69

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQL 129

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 186 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 222
           PKL  LLK+LLWAQN+LD+ K  Y R+ DL+  T+EDP
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 227

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  232 bits (592), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/218 (54%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 186 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 222
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+  T+E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  229 bits (585), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 167/218 (76%), Gaps = 1/218 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query: 186 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 222
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  228 bits (582), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 164/218 (75%), Gaps = 1/218 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query: 186 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 222
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  228 bits (580), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 163/218 (74%), Gaps = 1/218 (0%)

Query: 6   ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 66  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 125
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 126 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query: 186 PKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 222
           PKL  LLK+LLWAQN+LD+ K  YP++ DL+   +E+P
Sbjct: 190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 112/203 (55%), Gaps = 10/203 (4%)

Query: 9   EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKK 68
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 69  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 119
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 120 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 178
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 179 SQSHEKDPKLPSLLKMLLWAQNQ 201
           SQ    + +L SL+    W + +
Sbjct: 200 SQGLSNESRLLSLVNFERWCEKE 222

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 25  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 84
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 85  LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 116
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 25  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 84
           + ++V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 221 IQRMVSSYLVHHGYCSTAEAFAKSTDQTVQEELASIKNRQRIQKLVLSGRMGEAIETTQQ 280

Query: 85  LNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL-APRG 129
           L P +L+ NP L F L+ ++ IE++ NG   E        L +P G
Sbjct: 281 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSEVRCLGNRSLKSPDG 325

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
224113997	242	predicted protein [Populus trichocarpa]	0.995	0.921	0.964	1e-121
255560784	287	Protein C20orf11, putative [Ricinus comm	0.995	0.777	0.964	1e-121
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	0.995	0.921	0.959	1e-120
449457706	242	PREDICTED: glucose-induced degradation p	0.995	0.921	0.959	1e-120
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	0.995	0.921	0.959	1e-120
224078908	226	predicted protein [Populus trichocarpa]	1.0	0.991	0.941	1e-119
388504878	226	unknown [Lotus japonicus]	0.995	0.986	0.950	1e-119
388518815	226	unknown [Lotus japonicus]	0.995	0.986	0.946	1e-119
357446437	241	hypothetical protein MTR_2g012810 [Medic	0.982	0.912	0.954	1e-118
388507964	241	unknown [Medicago truncatula]	0.982	0.912	0.95	1e-117

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/223 (96%), Positives = 218/223 (97%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESGTEPDIDLATIT
Sbjct: 20  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGTEPDIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR IELIRNGKVEEALEFA
Sbjct: 80  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRFIELIRNGKVEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDISQRLKTASEVNAAILTSQS
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDISQRLKTASEVNAAILTSQS 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
            EKDPKLPSLLKMLLWAQNQLDEKA YPRINDL+TA LEDPA+
Sbjct: 200 REKDPKLPSLLKMLLWAQNQLDEKAVYPRINDLSTAMLEDPAV 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/223 (96%), Positives = 220/223 (98%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFR ESGTEPDIDLATIT
Sbjct: 65  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRKESGTEPDIDLATIT 124

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 125 DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 184

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 185 QEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDISQRLKTASEVNAAILTSQS 244

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKML+WAQNQLDEKAAYPRINDL+TA LEDPA+
Sbjct: 245 HEKDPKLPSLLKMLIWAQNQLDEKAAYPRINDLSTAMLEDPAV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/223 (95%), Positives = 221/223 (99%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AAEKFRMESGTEPDIDLATIT
Sbjct: 20  SKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 80  DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQS 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDPA+
Sbjct: 200 HEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/223 (95%), Positives = 219/223 (98%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG EP+IDLATIT
Sbjct: 20  SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGAEPEIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 80  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDISQRLKTASEVNAAILTSQS
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDISQRLKTASEVNAAILTSQS 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKML+WAQ+QLDEKAAYPRINDL+TA LEDP +
Sbjct: 200 HEKDPKLPSLLKMLMWAQDQLDEKAAYPRINDLSTAMLEDPPV 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/223 (95%), Positives = 221/223 (99%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AAEKFRMESGTEPDIDLATIT
Sbjct: 20  SKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRMESGTEPDIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 80  DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQS 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKMLL AQNQLDEKAAYPR+NDL+TATLEDPA+
Sbjct: 200 HEKDPKLPSLLKMLLCAQNQLDEKAAYPRVNDLSTATLEDPAV 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078908|ref|XP_002305675.1| predicted protein [Populus trichocarpa] gi|222848639|gb|EEE86186.1| predicted protein [Populus trichocarpa]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/224 (94%), Positives = 218/224 (97%)

Query: 1   MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATI 60
           MSKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKF+MESG EPDIDLATI
Sbjct: 3   MSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFQMESGAEPDIDLATI 62

Query: 61  TDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF 120
           TDRMA KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV EAL+F
Sbjct: 63  TDRMAAKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVNEALQF 122

Query: 121 AQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ 180
           AQEELAPRGEE+ SFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ
Sbjct: 123 AQEELAPRGEEDHSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ 182

Query: 181 SHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           SHEKDPKLPSLLKMLLWAQNQLDEKAAYPRI +L+TA LEDPA+
Sbjct: 183 SHEKDPKLPSLLKMLLWAQNQLDEKAAYPRIKNLSTAMLEDPAV 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504878|gb|AFK40505.1| unknown [Lotus japonicus]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/223 (95%), Positives = 218/223 (97%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV+AAEKFR ESGTEPDIDLATIT
Sbjct: 4   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRKESGTEPDIDLATIT 63

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 64  DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 123

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEEN SFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 124 QEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQS 183

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKML+WAQNQLDEKAAYP IND++ ATLEDPA+
Sbjct: 184 HEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISEATLEDPAV 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518815|gb|AFK47469.1| unknown [Lotus japonicus]

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/223 (94%), Positives = 218/223 (97%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV+AAEKFR ESGTEPDIDLATIT
Sbjct: 4   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVEAAEKFRKESGTEPDIDLATIT 63

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ G+VEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA
Sbjct: 64  DRMAVKKAVQSGDVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 123

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEEN SFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 124 QEELAPRGEENHSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQS 183

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPAI 224
           HEKDPKLPSLLKML+WAQNQLDEKAAYP IND++ ATLEDPA+
Sbjct: 184 HEKDPKLPSLLKMLIWAQNQLDEKAAYPHINDISKATLEDPAV 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/220 (95%), Positives = 217/220 (98%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAAEKFR ESGTEPDIDLATIT
Sbjct: 20  SKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAAEKFRKESGTEPDIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGK+EEALEFA
Sbjct: 80  DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQS
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQS 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 221
           HEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 200 HEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/220 (95%), Positives = 216/220 (98%)

Query: 2   SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
           SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAAEKFR ESGTEPDIDLATIT
Sbjct: 20  SKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAAEKFRKESGTEPDIDLATIT 79

Query: 62  DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFA 121
           DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGK+EEALEFA
Sbjct: 80  DRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFA 139

Query: 122 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
           QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDISQRLKTASEVNAAILTSQ 
Sbjct: 140 QEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQR 199

Query: 182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLED 221
           HEKDPKLPSLLKML+WAQNQLDEKAA+PRINDL+TA LED
Sbjct: 200 HEKDPKLPSLLKMLIWAQNQLDEKAAFPRINDLSTAALED 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.991	0.913	0.806	1.7e-91
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.973	0.956	0.596	1.1e-66
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.968	0.951	0.5	1.2e-56
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.968	0.868	0.513	3.3e-56
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.968	0.951	0.490	5.3e-56
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.968	0.951	0.490	1.4e-55
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.968	0.951	0.490	2.3e-55
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.950	0.950	0.529	2.1e-52
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.946	0.765	0.531	9.2e-52
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.924	0.763	0.384	6.7e-33

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 179/222 (80%), Positives = 194/222 (87%)

Query:     2 SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATIT 61
             SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+AAEKF+ ESGT+P+IDLATIT
Sbjct:    21 SKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEIDLATIT 80

Query:    62 DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXX 121
             DRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQQQRLIELIR GK        
Sbjct:    81 DRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFA 140

Query:   122 XXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS 181
                  PRGEENQ+FLEELE+TVALL F+D S CPV +LLD+S RLKTASEVNAAILTSQS
Sbjct:   141 QEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQS 200

Query:   182 HEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLEDPA 223
             HEKDPKLPSLLKML+WAQ QLDEKA YP INDL+T  LEDP+
Sbjct:   201 HEKDPKLPSLLKMLIWAQTQLDEKAVYPHINDLSTGKLEDPS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 130/218 (59%), Positives = 160/218 (73%)

Query:     3 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 62
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    63 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 122
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   123 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 182
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   183 EKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATLE 220
             +KDPKLP++LK+L WAQ QLD K  YP+I +  T   E
Sbjct:   191 DKDPKLPTILKLLKWAQTQLDSKCIYPKITNTVTGEYE 228

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 109/218 (50%), Positives = 157/218 (72%)

Query:     6 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 125
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   126 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   186 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 222
             PKL  LLK+LLWAQN+LD+K   YP++ DL+  T+E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGTIEEP 227

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 112/218 (51%), Positives = 156/218 (71%)

Query:     6 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
             IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++DL ++ +R+ 
Sbjct:    32 ITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVDLDSLDERIK 91

Query:    66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 125
             +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    92 IREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQL 151

Query:   126 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   152 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 211

Query:   186 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 222
             PKL  LLK+LLWAQN+LD+K   Y R+ DL+  T+EDP
Sbjct:   212 PKLAKLLKLLLWAQNELDQKKVKYSRMTDLSKGTIEDP 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/218 (49%), Positives = 157/218 (72%)

Query:     6 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 125
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   126 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   186 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 222
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 107/218 (49%), Positives = 154/218 (70%)

Query:     6 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 125
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   126 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   186 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 222
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/218 (49%), Positives = 153/218 (70%)

Query:     6 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 65
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    66 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 125
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   126 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKD 185
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   186 PKLPSLLKMLLWAQNQLDEKAA-YPRINDLATATLEDP 222
             PKL  LLK+LLWAQN+LD+K   YP++ DL+   +E+P
Sbjct:   190 PKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEP 227

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/219 (52%), Positives = 147/219 (67%)

Query:     3 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 62
             K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T P+ DLA++ +
Sbjct:     5 KIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLASMNE 64

Query:    63 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 122
             R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K         
Sbjct:    65 RLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAVAFAQ 120

Query:   123 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 182
                 P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI TSQ+ 
Sbjct:   121 EKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHTSQTG 180

Query:   183 EKDPKLPSLLKMLLWAQNQLDEKAAY--PRINDLATATL 219
             EK P+L  LLK L+W QNQLDEK  Y  PR+ND +T  L
Sbjct:   181 EKGPELERLLKELIWTQNQLDEKTVYVYPRMNDFSTGQL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 117/220 (53%), Positives = 153/220 (69%)

Query:     3 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 62
             KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ ESGT+  + +A+I+D
Sbjct:    53 KKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKESGTK-QVGVASISD 111

Query:    63 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNG-KVXXXXXXX 121
             R+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE IR G  +       
Sbjct:   112 RLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIERIRIGVTIKETFNFA 167

Query:   122 XXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQRLKTASEVNAAILTS 179
                  P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+  KTA+EVNAAILTS
Sbjct:   168 EKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRWFKTAAEVNAAILTS 227

Query:   180 QSHEKDPKLPSLLKMLLWAQNQLDEKAAYPRINDLATATL 219
             Q+  K PKL  LLKML W QNQLDEK  YPR++ L T  L
Sbjct:   228 QTGLKCPKLLDLLKMLTWTQNQLDEKVEYPRMSVLPTGQL 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 83/216 (38%), Positives = 125/216 (57%)

Query:     7 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAV 66
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  EP +D+ +I +R+ +
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEP-VDVESIRERVEI 75

Query:    67 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXX 120
             + A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +      
Sbjct:    76 RTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEF 135

Query:   121 XXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 179
                   PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  
Sbjct:   136 ATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQD 195

Query:   180 QSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDL 214
             Q    +  L    ++  WA+ +  E K   P   DL
Sbjct:   196 QGARTEALLCDFARLYAWAEQKAREAKKDIPDKLDL 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5321	0.9687	0.9517	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6376	0.9732	0.9561	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5321	0.9687	0.9517	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5321	0.9687	0.9517	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5412	0.9687	0.9517	yes	no
A7SWD3	GID8_NEMVE	No assigned EC number	0.5069	0.9642	0.96	N/A	no
Q10446	YDED_SCHPO	No assigned EC number	0.3546	0.8616	0.8041	yes	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5550	0.9687	0.9517	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	224
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	4e-42
smart00757	99	smart00757, CRA, CT11-RanBPM	1e-25
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	9e-12
pfam08513	27	pfam08513, LisH, LisH	7e-07
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	2e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  139 bits (352), Expect = 4e-42
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 3/146 (2%)

Query: 59  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 118
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 119 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 177
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 178 TSQSHEKDPKLPSLLKMLLWAQNQLD 203
                  +  L  LLK  L A   L 
Sbjct: 119 KLLGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 95.4 bits (238), Expect = 1e-25
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 112 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 170
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 171 EVNAAILTSQS-HEKDPKLPSLLKMLLWAQNQLDEK 205
           E+N+AIL        +  L  LL   L A   L EK
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 58.0 bits (141), Expect = 9e-12
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 59  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 116
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 7e-07
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 23 EDMNKLVMNFLVTEGYVDAAEKFRMES 49
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.4 bits (101), Expect = 2e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 20 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 53
          I + ++N+L++ +L+  GY + AE  + ESG   
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.97
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.91
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.73
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.39
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.26
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.51
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.27
KOG1477	469	consensus SPRY domain-containing proteins [General	98.21
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.18
COG5109	396	Uncharacterized conserved protein, contains RING Z	97.3
KOG1333	241	consensus Uncharacterized conserved protein [Funct	95.12
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	91.22

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=9.6e-44  Score=289.20  Aligned_cols=219  Identities=58%  Similarity=0.895  Sum_probs=211.9

Q ss_pred             ccCCHHHHHHHHhcCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC-CCCHHhHHHHHHHHHHHHcCCHHHHHHHH
Q 027339            4 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV   82 (224)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~-~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~   82 (224)
                      +.++.+.|.+.+..+.+.+.++|+||++||+++||.++|..|.+|+|+.+ ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999997 88999999999999999999999999999


Q ss_pred             HhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCCCCchhhhcCh
Q 027339           83 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  162 (224)
Q Consensus        83 ~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~sp~~~l~~~  162 (224)
                      +.+.|.+++.+..|.|.|++|+||||||.|...+||+|+|++++|++..+++...+++++|++|+|+++..||+++++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHhh-cCCCCCCCCcCccccCCC
Q 027339          163 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP  222 (224)
Q Consensus       163 ~~r~~la~~vn~~il~~~~~~~~~~Le~l~k~~~~~q~~L~~-~~~~p~~~~~~~~~~~~~  222 (224)
                      ++|.++|..+|++|+++++....++|..|++...|++..++. +..+|.+.++.+|.++.|
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  228 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence            999999999999999999988899999999999999999875 678999999999999876

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=4.3e-31  Score=205.42  Aligned_cols=140  Identities=38%  Similarity=0.586  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHH
Q 027339           60 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  139 (224)
Q Consensus        60 ~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l  139 (224)
                      |.+|+.|+++|++||+++|++||++++|.+++.++.+.|.|++|+|||+|+++++.+||+|+|++++|+..   ...+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999977654   458899


Q ss_pred             HHHhhHhcccCCCC---CchhhhcChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH
Q 027339          140 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  202 (224)
Q Consensus       140 ~~~~~LL~y~~~~~---sp~~~l~~~~~r~~la~~vn~~il~~~~~~~~~~Le~l~k~~~~~q~~L  202 (224)
                      +++|++|+|+++.+   +|+++++++.+|+.|++.||++++..+|.+..|+|+.+++++.++.++|
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999999999999999999999998764

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=7.4e-30  Score=218.26  Aligned_cols=179  Identities=22%  Similarity=0.321  Sum_probs=170.3

Q ss_pred             CChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhc
Q 027339           20 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH   99 (224)
Q Consensus        20 ~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~   99 (224)
                      -++..++++|++|+.|+||.+||..|.++++++..+|.+.+...+.|+++|+.|++.+|+.||++|.-.|.+.++.++|.
T Consensus       113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~  192 (389)
T KOG0396|consen  113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ  192 (389)
T ss_pred             hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCC-CCCchhhhcChhhHHHHHHHHHHHHHh
Q 027339          100 LQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILT  178 (224)
Q Consensus       100 L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~-~~sp~~~l~~~~~r~~la~~vn~~il~  178 (224)
                      ++.|+|||||+.+++.+||+|++++++|++..+   ..+++.+||+++|+.- +.++|..+++..||+.+++.|-....+
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~  269 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALK  269 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999998644   7899999999999954 566799999999999999999999999


Q ss_pred             hCCCCCCCcHHHHHHHHHHHHHH
Q 027339          179 SQSHEKDPKLPSLLKMLLWAQNQ  201 (224)
Q Consensus       179 ~~~~~~~~~Le~l~k~~~~~q~~  201 (224)
                      .+|.+..|+|-..++.+..+++.
T Consensus       270 l~~i~~~~~L~~~l~~GLsalKT  292 (389)
T KOG0396|consen  270 LFGIPINPALTIYLQAGLSALKT  292 (389)
T ss_pred             HhCCCCCcHHHHHHHhhhhhccc
Confidence            99999999999999999888877

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.9e-23  Score=178.31  Aligned_cols=199  Identities=20%  Similarity=0.290  Sum_probs=172.2

Q ss_pred             cCCCChHH-HHHHHHHHHHHhCHHHHHHHHHHHhCCCCC--CCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhcc
Q 027339           17 DVKIRKED-MNKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN   93 (224)
Q Consensus        17 ~~~~~~~~-l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~--~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~   93 (224)
                      ++..+... ||.+|..|++++|..|+|..|.+|+|....  .....|.+.++|..+|.+||+.+|++|+..++..|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            45555555 599999999999999999999999999753  446778999999999999999999999999999999999


Q ss_pred             ccchhchHHHHHHHHHhcCChH--HHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCC--CCCchhhhcChhhHHHHH
Q 027339           94 PQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFEDV--SNCPVGDLLDISQRLKTA  169 (224)
Q Consensus        94 ~~l~F~L~~q~fiEli~~~~~~--~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~--~~sp~~~l~~~~~r~~la  169 (224)
                      +.|+|.|+.++|+++++.|.-.  +||.|+|++++||+.++   .++++++|++|.|-..  +++||.+++++..|..+.
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~  266 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT  266 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence            9999999999999999988665  99999999999998765   6899999999999754  689999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH--------------hhcCCCCCCCCcCccc
Q 027339          170 SEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL--------------DEKAAYPRINDLATAT  218 (224)
Q Consensus       170 ~~vn~~il~~~~~~~~~~Le~l~k~~~~~q~~L--------------~~~~~~p~~~~~~~~~  218 (224)
                      ..|-+......|.+.+++|..++..+..+--+|              ..+...|--++|+.+.
T Consensus       267 ~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~  329 (394)
T KOG2817|consen  267 EEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEY  329 (394)
T ss_pred             HHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccCccceeccccc
Confidence            999999999999999998888777654333222              2345677777777665

>smart00757 CRA CT11-RanBPM

Probab=99.73  E-value=3.6e-17  Score=118.86  Aligned_cols=93  Identities=46%  Similarity=0.568  Sum_probs=87.3

Q ss_pred             ChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCC-CCCchhhhcChhhHHHHHHHHHHHHHhhC-CCCCCCcHHH
Q 027339          113 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS  190 (224)
Q Consensus       113 ~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~-~~sp~~~l~~~~~r~~la~~vn~~il~~~-~~~~~~~Le~  190 (224)
                      ++.+||+|||++++|+...++...++++++|++|+|+++ +.+||+++++.++|..+++.||++|+..+ |.+.+|+|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998887778899999999999999 89999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 027339          191 LLKMLLWAQNQLDEK  205 (224)
Q Consensus       191 l~k~~~~~q~~L~~~  205 (224)
                      +++++.|++.++...
T Consensus        82 ~~~~~~~~~~~l~~~   96 (99)
T smart00757       82 LLSAGLAALKTLLEK   96 (99)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998653

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.39  E-value=7.7e-13  Score=86.67  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhchHHHHHHHHHhcCCh
Q 027339           60 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  114 (224)
Q Consensus        60 ~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~  114 (224)
                      +..+..|+++|+.|+|++|++|+++++|.+.+.++.+.|.|++|+|+|+++.++.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            4678999999999999999999999999999999999999999999999998764

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.26  E-value=5.2e-11  Score=104.21  Aligned_cols=171  Identities=15%  Similarity=0.177  Sum_probs=136.4

Q ss_pred             CChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccchhc
Q 027339           20 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH   99 (224)
Q Consensus        20 ~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~F~   99 (224)
                      +.+.++.+++.+.|+..||.+++..++.|+|+-...     ++-+.+.+.++.|+|+.+..-+....-+..+......|.
T Consensus        15 ikk~efi~il~q~l~slgy~~S~~~lE~es~ll~~t-----at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL   89 (519)
T KOG0293|consen   15 IKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPT-----ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL   89 (519)
T ss_pred             eccchhhHhHHHHHHhcCccccchhhHHhhCccccc-----chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH
Confidence            456788999999999999999999999999987543     235668899999999999998887743335555789999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCCCC-c--hhhhcChhhHHHHHHHHHHHH
Q 027339          100 LQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-P--VGDLLDISQRLKTASEVNAAI  176 (224)
Q Consensus       100 L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~s-p--~~~l~~~~~r~~la~~vn~~i  176 (224)
                      +.+|.|+|+++.|++..|+...|+.+.+....    .+++.++.+.|.+++...+ .  -... ....|.+|.+++.+.|
T Consensus        90 v~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~~~~ne~~~~~~-~~n~R~~ll~elskyi  164 (519)
T KOG0293|consen   90 VNKQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSNDQFSNEENTTAQ-LNNERDKLLDELSKYI  164 (519)
T ss_pred             HHHHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhccccccccccchhhh-hchhHHHHHHHHHhhC
Confidence            99999999999999999999999877777543    5677888878877753211 1  1111 1355899999999988


Q ss_pred             HhhCCCCCCCcHHHHHHHHHHHHHH
Q 027339          177 LTSQSHEKDPKLPSLLKMLLWAQNQ  201 (224)
Q Consensus       177 l~~~~~~~~~~Le~l~k~~~~~q~~  201 (224)
                      ....- .|+.+|+.|+++++..|..
T Consensus       165 ~p~il-lP~rRLehLl~qAv~~Q~d  188 (519)
T KOG0293|consen  165 PPNIL-LPKRRLEHLLEQAVKYQRD  188 (519)
T ss_pred             CHhhc-CChHHHHHHHHHHHHHHHh
Confidence            76654 5789999999999988865

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.51  E-value=1.8e-07  Score=51.63  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 027339           23 EDMNKLVMNFLVTEGYVDAAEKFRMES   49 (224)
Q Consensus        23 ~~l~~lI~~yL~~~Gy~~ta~~l~~e~   49 (224)
                      ++||.+|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            469999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.27  E-value=1.9e-06  Score=49.53  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 027339           21 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   52 (224)
Q Consensus        21 ~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~   52 (224)
                      .+.+++++|++||.++||.+||.+|.+|+++.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.21  E-value=4.6e-07  Score=82.76  Aligned_cols=178  Identities=24%  Similarity=0.212  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHhCHHHHHHHHHHHhCCCCCC-------CHHhH-----HHHHHHHHHHHcCCHHHHHHHHHhcCchhhh--
Q 027339           26 NKLVMNFLVTEGYVDAAEKFRMESGTEPDI-------DLATI-----TDRMAVKKAVQCGNVEDAIEKVNDLNPEILD--   91 (224)
Q Consensus        26 ~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~-------~~~~~-----~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~--   91 (224)
                      ...+-.|+++.|+.+++..++..+......       ..+..     ..+...+.-+-.|.+..+.+.+.+..+....  
T Consensus       253 t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~  332 (469)
T KOG1477|consen  253 TVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVG  332 (469)
T ss_pred             CCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccc
Confidence            357889999999999999998876542110       00000     0233333333344444555555444444333  


Q ss_pred             -----ccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCC--CChHHHHHHHHHhhHhcccCCCCCchhhhcChhh
Q 027339           92 -----TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLLDISQ  164 (224)
Q Consensus        92 -----~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~--~~~~~~~~l~~~~~LL~y~~~~~sp~~~l~~~~~  164 (224)
                           ..+...+.+.|+.++.+.+.+.+...+++.+.++++...  .+......++.+++|++|.+|..||..+..++.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~~~  412 (469)
T KOG1477|consen  333 QVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDPIQ  412 (469)
T ss_pred             eeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCccc
Confidence                 247789999999999999999999999999999888765  3334567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHh
Q 027339          165 RLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLD  203 (224)
Q Consensus       165 r~~la~~vn~~il~~~~~~~~~~Le~l~k~~~~~q~~L~  203 (224)
                      |+-+++.+|.+|+...+.++++.|+.++.+.-.+...+.
T Consensus       413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~~  451 (469)
T KOG1477|consen  413 REPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLYA  451 (469)
T ss_pred             chhHHhhhcccccccCCCCccchhhhhhccchhhHhhhh
Confidence            999999999999999999999999999999887766653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.18  E-value=1.8e-05  Score=68.22  Aligned_cols=169  Identities=18%  Similarity=0.217  Sum_probs=115.9

Q ss_pred             CCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccch
Q 027339           18 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF   97 (224)
Q Consensus        18 ~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l~   97 (224)
                      +.+...++.+||.+||-.+.+-.|...|.+|.++....    ......+.+.|-+|.||..+.-++...-.     ..-.
T Consensus         3 ieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNT----VDSvd~Fv~dI~sG~WD~VL~~vqsLKLP-----~kkL   73 (508)
T KOG0275|consen    3 IEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNT----VDSVDGFVNDINSGHWDTVLKTVQSLKLP-----DKKL   73 (508)
T ss_pred             eeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceee----chhHHHHHHhcccCchHHHHHHHHhccCc-----hhHH
Confidence            45566789999999999999999999999999876421    11234577899999999999999876533     2234


Q ss_pred             hchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhc--ccCCCCCchhhhcChhhHHHHHHHHHHH
Q 027339           98 FHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLA--FEDVSNCPVGDLLDISQRLKTASEVNAA  175 (224)
Q Consensus        98 F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~--y~~~~~sp~~~l~~~~~r~~la~~vn~~  175 (224)
                      -.|+.|-.+|||.-+.+..|-..+|+. .|+..-.+...++.-++=.||.  |.||... |.+.-...+|..+|..+.. 
T Consensus        74 ~dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea-Y~dssKEkrRa~IAQ~ls~-  150 (508)
T KOG0275|consen   74 IDLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLENLLNRSYFDPREA-YGDSSKEKRRAVIAQALSG-  150 (508)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHHHHhcccccChhhh-cCcchHHHHHHHHHHHhcC-
Confidence            689999999999988888888778753 3433211111333333334553  5666432 4443334556666665544 


Q ss_pred             HHhhCCCCCCCcHHHHHHHHHHHHHH
Q 027339          176 ILTSQSHEKDPKLPSLLKMLLWAQNQ  201 (224)
Q Consensus       176 il~~~~~~~~~~Le~l~k~~~~~q~~  201 (224)
                         .....+.++|..|+-|+.-+|..
T Consensus       151 ---EV~VVppSRLlaLlGQaLKWQqH  173 (508)
T KOG0275|consen  151 ---EVHVVPPSRLLALLGQALKWQQH  173 (508)
T ss_pred             ---ceEEcChHHHHHHHHHHhhhHhh
Confidence               34456789999999998877654

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.30  E-value=0.0061  Score=52.45  Aligned_cols=179  Identities=13%  Similarity=0.037  Sum_probs=123.8

Q ss_pred             CCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCC-CCHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhccccc
Q 027339           18 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD-IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQL   96 (224)
Q Consensus        18 ~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~-~~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~~~~l   96 (224)
                      .+.+...++.+-..+..+.|-..-+..|+.+.|..+. ...+.|...+.|.+.|.+.+...-++|. +....+.+.++..
T Consensus        96 f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtes  174 (396)
T COG5109          96 FSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTES  174 (396)
T ss_pred             CccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchh
Confidence            3444445556666666677777778889999988753 4468889999999999999999999999 4444555555555


Q ss_pred             hhchHHH--HHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCC------C----------------
Q 027339           97 FFHLQQQ--RLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV------S----------------  152 (224)
Q Consensus        97 ~F~L~~q--~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~------~----------------  152 (224)
                      .+.+...  .++-++-+ ++++|+.++++.++.+...+   ...++..+-.+.+...      +                
T Consensus       175 el~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksli  250 (396)
T COG5109         175 ELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLI  250 (396)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhc
Confidence            5555554  44445544 79999999999888775332   4455555555444210      0                


Q ss_pred             CCc--hhhhcChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHH
Q 027339          153 NCP--VGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL  202 (224)
Q Consensus       153 ~sp--~~~l~~~~~r~~la~~vn~~il~~~~~~~~~~Le~l~k~~~~~q~~L  202 (224)
                      +-|  +-+-+ ...|..+...|-+.+.+..|++-+++|..++..+.-+-.+|
T Consensus       251 gqPiEdIDkv-nk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l  301 (396)
T COG5109         251 GQPIEDIDKV-NKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQL  301 (396)
T ss_pred             CCcHHHHHHh-hhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHH
Confidence            011  11111 14589999999999999999999999999988866555443

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.12  E-value=0.25  Score=40.21  Aligned_cols=134  Identities=15%  Similarity=0.189  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCC--CHHhHHHHHHHHHHHHcCCHHHHHHHHHhcCchhhhc----c---
Q 027339           23 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDI--DLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT----N---   93 (224)
Q Consensus        23 ~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~--~~~~~~~r~~I~~~I~~g~~~~Ai~~~~~~~~~l~~~----~---   93 (224)
                      +..+.+|.+||+-.|+.-|.++|-.|.......  ..+.  ..-++.++|...|++.--+.-.....+++..    .   
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdr--ivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~   83 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDR--IVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPT   83 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            457899999999999999999998887654321  2222  2445667777777776654433333333322    1   


Q ss_pred             -ccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCC-CCchhhhcChh
Q 027339           94 -PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVS-NCPVGDLLDIS  163 (224)
Q Consensus        94 -~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~-~sp~~~l~~~~  163 (224)
                       ..++--+.+...+-.|.++..++|-+|.++.-+.... .    .+-++-+.+=..+.-+ ..|+...++..
T Consensus        84 ~~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q----~eWkDWF~fPf~~~a~~tppf~~~F~kt  150 (241)
T KOG1333|consen   84 IHKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-Q----AEWKDWFVLPFLPSAKDTPPFRKYFDKT  150 (241)
T ss_pred             HHHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-c----hhhhhheecccCCCCCCCccHHHHHHhh
Confidence             3355566777778888899999999999876544432 1    2334322222222223 34577777654

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=91.22  E-value=0.45  Score=33.15  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 027339           23 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   53 (224)
Q Consensus        23 ~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~   53 (224)
                      ..++.||.+||...||.=|+..|..|+|...
T Consensus        19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   19 RLINELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            3578999999999999999999999999864

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 73/235 (31%)

Query: 15  LNDVKIRKEDMNKLVMNF----LVTEGYVDAAEKFRMESGTEPDID--LATITDRMAVK- 67
           L +V+   +  N    N     L+T  +    +     + T   +D    T+T       
Sbjct: 250 LLNVQ-NAKAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 68  --KAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG------------ 112
             K + C        +  DL  E+L TNP     L    +I E IR+G            
Sbjct: 307 LLKYLDC--------RPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNC 352

Query: 113 -KVEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLD 161
            K+   +E +   L P   E +   + L             ++L+ F+ + +      + 
Sbjct: 353 DKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MV 406

Query: 162 ISQRLKTASEVNAAILTSQSHEKDPK-----LPSLLKMLLWAQNQLDEKAAYPRI 211
           +  +L   S V          EK PK     +PS+   L       +E A +  I
Sbjct: 407 VVNKLHKYSLV----------EKQPKESTISIPSIY--LELKVKLENEYALHRSI 449

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 9e-04
 Identities = 34/226 (15%), Positives = 63/226 (27%), Gaps = 47/226 (20%)

Query: 2   SKKVITREEWEKKLNDV--KIRKED------MN---KLVMNFLVTEGYVDAAEKFRMESG 50
           +K  ++R +   KL     ++R         +    K     +  +  +    + +M+  
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFK 183

Query: 51  TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 110
               I    +           C + E  +E +  L  +I         H    +L     
Sbjct: 184 ----IFWLNLK---------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----- 225

Query: 111 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQR-LKTA 169
                  +   Q EL       +  L+       LL   +V N    +  ++S + L T 
Sbjct: 226 ------RIHSIQAEL-------RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 170 SEVNAAILTSQSHEKDPKLPSLLKMLLWAQN-QLDEKAAYPRINDL 214
                    S +      L      L   +   L  K    R  DL
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.66
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.5
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	87.83
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	85.88
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	82.76

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.66  E-value=0.011  Score=40.97  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCChHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 027339           18 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   52 (224)
Q Consensus        18 ~~~~~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~   52 (224)
                      ++++.+++|.||..||...||..||-+|.+|+++.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            35788999999999999999999999999998875

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.50  E-value=0.014  Score=40.19  Aligned_cols=54  Identities=17%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027339           22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   81 (224)
Q Consensus        22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~   81 (224)
                      +.+|++-|++||...||.+++.+|.+|+++... +. .  .  .....+++.+|...+.+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~-~~-~--~--~ky~gLLEKKWTSViRL   63 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN-EE-L--D--KKYAGLLEKKWTSVIRL   63 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC-HH-H--H--HHHTTHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC-ch-h--h--hhhhhhhhhhHHHHHHH
Confidence            468999999999999999999999999987753 11 1  1  13445666677666544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=87.83  E-value=0.1  Score=45.03  Aligned_cols=54  Identities=15%  Similarity=0.282  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027339           22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   81 (224)
Q Consensus        22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~~   81 (224)
                      +++++++|++||..+||.+++.+|.+|.++.....      .......+.++.|+..+..
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence            56799999999999999999999999998754221      1233455677777776654

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=85.88  E-value=0.92  Score=30.70  Aligned_cols=31  Identities=23%  Similarity=0.116  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 027339           23 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   53 (224)
Q Consensus        23 ~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~   53 (224)
                      ..++.||.+||...||.=|...|..|+|...
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~   49 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ   49 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence            5588999999999999999999999999863

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=82.76  E-value=2.6  Score=31.83  Aligned_cols=80  Identities=16%  Similarity=0.063  Sum_probs=51.2

Q ss_pred             HHHHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCCCCchh
Q 027339           78 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG  157 (224)
Q Consensus        78 Ai~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~sp~~  157 (224)
                      -..|++..-......-..+.|=+.++-|++||.+|...+|-.|..++-.-+..   .+.++++++.++..-....+.+..
T Consensus        34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i~~~~~l~~n~~~  110 (156)
T 2nxp_A           34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC---YYQDDLRVLSSLTKKEHMKGNETM  110 (156)
T ss_dssp             HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG---GGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHH---HHHHHHHHHhcCCCHHHHhhcHHH
Confidence            35677653222222226789999999999999999999999999977655543   335667765554433333334444


Q ss_pred             hhc
Q 027339          158 DLL  160 (224)
Q Consensus       158 ~l~  160 (224)
                      ..+
T Consensus       111 ~~f  113 (156)
T 2nxp_A          111 LDF  113 (156)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.46
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	86.88

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00067  Score=43.95  Aligned_cols=53  Identities=15%  Similarity=0.306  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHH
Q 027339           22 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIE   80 (224)
Q Consensus        22 ~~~l~~lI~~yL~~~Gy~~ta~~l~~e~~~~~~~~~~~~~~r~~I~~~I~~g~~~~Ai~   80 (224)
                      +.+||+-|++||..+||.+++.+|.+|+++....+  .    ..-...+++.+|...+.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~--~----~~ky~glLEKKWtSViR   59 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE--L----DKKYAGLLEKKWTSVIR   59 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHH--H----HHHHTTHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChh--h----hhhhcCcchhHHHHHHH
Confidence            46899999999999999999999999998763321  1    11223455566655543

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.34  Score=34.79  Aligned_cols=75  Identities=17%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             HHHHhcCchhhhccccchhchHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCChHHHHHHHHHhhHhcccCCCCCchh
Q 027339           80 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG  157 (224)
Q Consensus        80 ~~~~~~~~~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~~r~~l~p~~~~~~~~~~~l~~~~~LL~y~~~~~sp~~  157 (224)
                      .|+...-......-..+.|=+...-|++||.+|...+|..|.+++-.-+..   .+..+++++.++..-.+..+.|..
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~---~~~~~I~~L~~i~~~~~l~~n~~~  103 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQEC---YYQDDLRVLSSLTKKEHMKGNETM  103 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCG---GGHHHHHHHHTCCSHHHHTTCGGG
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhH---HHHHHHHHHHcCCCHHHHhhhHHH
Confidence            455543322222236789999999999999999999999999987555433   345677776655444433334433