Citrus Sinensis ID: 027530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEcccEEEEEEccccccccEEEcccHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHcccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcccEEEEEEccccccccEEHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccEEEEEcEEEcHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
meadrlnspstsVINLEVLGhqlqfsqdpnskhlgttvWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGcnvittdqieVLPLLKRNvewntsrisqmnpgsgnllgSIQAVeldwgnedhikavappfdyiigTDVVYAEHLLEPLLQTIfalsgpkttiLLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Flexible Loop (DISEMBL)
meadrlnspstSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRIsqmnpgsgnlLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Low Complexity Region (SEG)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered region (IsUnstruct)
*************INLEVLGHQLQF******KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP***************
Disordered Region (DISOPRED)
**********TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP*GLY
Disordered Region (DISEMBL)
**********TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISPRO)
*****LNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9H867	229	Protein-lysine methyltran	yes	no	0.792	0.768	0.331	1e-20
Q8C436	228	Protein-lysine methyltran	yes	no	0.765	0.745	0.351	1e-20
A4IGU3	215	Protein-lysine methyltran	no	no	0.833	0.860	0.302	4e-17
Q8WXB1	218	Protein-lysine methyltran	no	no	0.752	0.766	0.331	2e-16
A4FV98	226	Protein-lysine methyltran	yes	no	0.788	0.774	0.304	5e-15
Q5BLD8	218	Protein-lysine methyltran	yes	no	0.599	0.610	0.388	8e-15
Q28IN4	224	Protein-lysine methyltran	no	no	0.707	0.700	0.320	1e-14
Q8BLU2	248	Protein-lysine methyltran	no	no	0.756	0.677	0.291	2e-14
A6NDL7	271	Putative methyltransferas	no	no	0.720	0.590	0.320	2e-14
A6QP81	257	Protein-lysine methyltran	no	no	0.743	0.642	0.285	3e-14

>sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 17/193 (8%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146
            +V+ TD  E+  LLK N+  N   ++          GS+QA  L WG E  I+    P 
Sbjct: 90  ADVVVTDLEELQDLLKMNINMNKHLVT----------GSVQAKVLKWGEE--IEGFPSPP 137

Query: 147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFN 202
           D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + +F+
Sbjct: 138 DFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFD 197

Query: 203 VKLVPKAKESTMW 215
            + +P  K    +
Sbjct: 198 FEKIPLEKHDEEY 210

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 18/188 (9%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146
            +VI TD  E+  LLK N++ N   ++          GS+QA  L WG +  I+ +  P 
Sbjct: 90  ADVIVTDLEELQDLLKMNIDMNKHLVT----------GSVQAKVLKWGED--IEDLMSP- 136

Query: 147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFN 202
           DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + +F+
Sbjct: 137 DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFD 196

Query: 203 VKLVPKAK 210
            + +P  K
Sbjct: 197 FEEIPLDK 204

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 23/208 (11%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
           R +  S S    + + H ++  QD     +   VWDA++V   YLE            L+
Sbjct: 16  RFHDSSAS---FKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLESE-------GIHLQ 65

Query: 65  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLG 124
              VIELGAG G+ G   ALLG  V  TD+   +  L+ NV  N  + S         L 
Sbjct: 66  NSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPKDS---------LH 116

Query: 125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184
            +    L+WG           +D+I+G D++Y E     LLQT   LS  ++ ILL   +
Sbjct: 117 RVSVRALNWGKS---LEEFSTYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRL 173

Query: 185 RSTSVHEQMLQMWKSNFNVKLVPKAKES 212
           R    H+  L+M K +F +  V   K +
Sbjct: 174 RYQRDHD-FLEMMKLHFTIADVYYDKNT 200

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 21  HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
           H +Q  QD     +   VWDA++V   YLE           +L+G+  +ELGAG G+ G 
Sbjct: 29  HTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLVGI 81

Query: 81  GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140
             ALLG +V  TD+   L  LK NV+ N      + P   ++       EL WG   ++ 
Sbjct: 82  VAALLGAHVTITDRKVALEFLKSNVQAN------LPP---HIQTKTVVKELTWGQ--NLG 130

Query: 141 AVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199
           + +P  FD I+G D++Y E     LLQT+  L    + ILL   IR        L M + 
Sbjct: 131 SFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLER 189

Query: 200 NFNVKLV 206
            F V+ V
Sbjct: 190 QFTVRKV 196

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 22/197 (11%)

Query: 20  GHQLQFSQDPNSK-HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
           GH L  +++  S+  +   VWDA++    Y E             +GK+VIELGAG G+ 
Sbjct: 37  GHVLNITENFGSRLGVAARVWDAALSLCNYFESQN-------VDFRGKKVIELGAGTGIV 89

Query: 79  GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138
           G   AL G +V  TD   VL  ++ NV+ N        PG     G  Q   L WG + H
Sbjct: 90  GILAALQGGDVTITDLPLVLEQIQGNVQANVP------PG-----GRAQVRALSWGIDQH 138

Query: 139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MW 197
           +      +D ++G D+VY E     LL T+  L GP  TI L  ++R     E   Q + 
Sbjct: 139 V--FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKMREEHGTESFFQHLL 196

Query: 198 KSNFNVKLVPKAKESTM 214
             +F ++L  + ++  +
Sbjct: 197 PQHFQLELAQRDEDENV 213

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNL 122
           LKGKRVIELGAG G+ G   ALLG NV  TD+   L  L  NV  N  +  Q        
Sbjct: 64  LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQ-------- 115

Query: 123 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 182
             ++Q  EL WG    +      +D I+G D+VY E     LLQT+  LS   T +LL  
Sbjct: 116 -KAVQVSELTWGENLDLYPQG-GYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSC 173

Query: 183 EIRSTSVHEQMLQMWKSNFNVKLV 206
            IR     E+ L   +  F+V+ V
Sbjct: 174 RIRYER-DERFLTELRQRFSVQEV 196

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 21/178 (11%)

Query: 38  VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97
           VWDA++    Y E+  +K  F     KGK+VIELGAG G+ G  ++LLG +V  TD    
Sbjct: 57  VWDAALFLCGYFEE--QKLDF-----KGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHA 109

Query: 98  LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 157
           L  +++NV  N   +S  NP         Q   L WG +   +     +D+++G D+VY 
Sbjct: 110 LSQIQKNVSAN---VSSNNPP--------QVCALSWGLDQ--EKFPQDYDFVLGADIVYL 156

Query: 158 EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 214
                 L+QT+  L GP+T+I L  ++R         Q +    F  +LV + K+  +
Sbjct: 157 HDTYPLLIQTLQYLCGPQTSIFLSSKMRQEHGTMHFFQDILPQYFASELVKRNKDEEI 214

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 17/185 (9%)

Query: 32  KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
           ++ GT VW  +    +YLE +  +       L+  +++E+GAG G+     +LLG  V  
Sbjct: 69  ENYGTVVWPGATALCQYLEDHTEE-----LNLQDAKILEIGAGAGLVSIVSSLLGAQVTA 123

Query: 92  TDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN--EDHIKAVAPPFDYI 149
           TD  +VL  L+ N+  NT   +   P         +  EL WG   E         +DY+
Sbjct: 124 TDLPDVLGNLQYNILKNTLECTAHLP---------EVRELVWGEDLEQSFPKSTCCYDYV 174

Query: 150 IGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 209
           + +DVVY  + L+ LL T+  LS P T +L   + R ++ +E  L  +K  F+  L+ + 
Sbjct: 175 LASDVVYHHYFLDKLLATMVYLSQPGTVVLWANKFRFSADYE-FLGKFKQAFDTTLLAEY 233

Query: 210 KESTM 214
            ES++
Sbjct: 234 SESSV 238

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 18/178 (10%)

Query: 10  STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVI 69
           +TS  +   +GH+++ ++  +    G  VW +++V   +LE N ++       +  K VI
Sbjct: 69  TTSWESFHFIGHEIRITEAMDC--YGAVVWPSALVLCYFLETNAKQ-----YNMVDKNVI 121

Query: 70  ELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV 129
           E+GAG G+     +LLG +V  TD  E+L  L+ N+  NT   S+  P         Q  
Sbjct: 122 EIGAGTGLVSIVASLLGAHVTATDLPELLGNLQYNISRNTKMKSKHLP---------QVK 172

Query: 130 ELDWGN--EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 185
           EL WG   + +    +  FDYI+  DVVYA   LE LL T   L    T IL   + R
Sbjct: 173 ELSWGVALDTNFPRSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)

Query: 35  GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ 94
           G  VW  ++   +YLE++  +       L+G +++E+GAG G+     ++LG  V  TD 
Sbjct: 81  GAVVWPGAMALCQYLEEHTEE-----LNLRGAKILEIGAGPGLVSIVASILGAQVTATDL 135

Query: 95  IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN--EDHIKAVAPPFDYIIGT 152
            +VL  L+ N+  NT   +   P         +  EL WG   E         +DY++ +
Sbjct: 136 PDVLGNLQYNLLKNTLNCTTYLP---------EVKELVWGEGLEQSFPKSTLYYDYVLAS 186

Query: 153 DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKES 212
           DVVY  + L+ LL T+  L  P T +L   + R ++ +E  L  +K  F+  L+ +++ES
Sbjct: 187 DVVYHHYFLDKLLATMVYLCQPGTVLLWANKFRFSTDYE-FLDKFKQVFDTTLLAESQES 245

Query: 213 TM 214
           ++
Sbjct: 246 SI 247

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
296087474	364	unnamed protein product [Vitis vinifera]	0.977	0.596	0.816	1e-102
225465726	314	PREDICTED: methyltransferase-like protei	0.977	0.691	0.816	1e-102
225436496	314	PREDICTED: methyltransferase-like protei	0.977	0.691	0.811	1e-102
255565427	314	conserved hypothetical protein [Ricinus	0.995	0.703	0.780	4e-98
449456044	309	PREDICTED: methyltransferase-like protei	0.972	0.699	0.752	2e-95
449496188	309	PREDICTED: methyltransferase-like protei	0.972	0.699	0.752	2e-95
297849112	322	hypothetical protein ARALYDRAFT_888039 [	0.977	0.673	0.738	4e-95
42571401	315	S-adenosylmethionine-dependent methyltra	0.972	0.685	0.743	7e-95
334182376	322	S-adenosylmethionine-dependent methyltra	0.954	0.658	0.747	2e-93
356542662	304	PREDICTED: methyltransferase-like protei	0.968	0.707	0.752	4e-93

>gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 195/218 (89%), Gaps = 1/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 51  MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 110

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGS 
Sbjct: 111 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 170

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
           +  GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILL
Sbjct: 171 S-FGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILL 229

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 230 GYEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 195/218 (89%), Gaps = 1/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGS 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
           +  GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILL
Sbjct: 121 S-FGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILL 179

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 180 GYEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/218 (81%), Positives = 195/218 (89%), Gaps = 1/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGS 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
           +  GS++  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILL
Sbjct: 121 S-FGSVEVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILL 179

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 180 GYEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis]

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 192/223 (86%), Gaps = 2/223 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSPS+ VI LEV+ HQLQF QDPNSKHLGTTVWDAS+VF K+LEKNCRKGRF P
Sbjct: 1   MEHDRLNSPSSCVITLEVMSHQLQFCQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+  S 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSV 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
           +   SI+  ELDWGNEDHI+AV PPFDYIIGTDVVY EHLLEPLLQTIFALSGPKTTI++
Sbjct: 121 SFR-SIKVEELDWGNEDHIRAVDPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMM 179

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP-LGLY 222
           GYEIRSTSVHEQML MWK NF VK++PKAK  + + +P + LY
Sbjct: 180 GYEIRSTSVHEQMLDMWKKNFEVKVIPKAKMDSKYQHPSIQLY 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 189/218 (86%), Gaps = 2/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP   
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNPSDS 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
              GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+L
Sbjct: 121 --FGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIML 178

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 179 GYEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 189/218 (86%), Gaps = 2/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP   
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNPSDS 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
              GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+L
Sbjct: 121 --FGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIML 178

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 179 GYEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 161/218 (73%), Positives = 187/218 (85%), Gaps = 1/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KNCRKGRF P
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELNFAQDPNSKHLGTTVWDASMVFAKYLGKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSA 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
           +  GS++  ELDWGNEDHI+AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++L
Sbjct: 121 S-FGSLRVAELDWGNEDHIRAVGPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVML 179

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST VH++MLQMWK NF VK +P++K    + +P
Sbjct: 180 GYEIRSTVVHDKMLQMWKDNFEVKTIPRSKMDGEYQDP 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 185/218 (84%), Gaps = 2/218 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF  
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSS 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGSA 120

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
              GS++  ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++L
Sbjct: 121 --FGSLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVML 178

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 179 GYEIRSTVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182376|ref|NP_001184933.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190128|gb|AEE28249.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/214 (74%), Positives = 182/214 (85%), Gaps = 2/214 (0%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
           RLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF  SKLK
Sbjct: 12  RLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSSSKLK 71

Query: 65  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLG 124
           GKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS    G
Sbjct: 72  GKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGSA--FG 129

Query: 125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 184
           S++  ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEI
Sbjct: 130 SLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEI 189

Query: 185 RSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           RST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 190 RSTVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542662|ref|XP_003539785.1| PREDICTED: methyltransferase-like protein 21D-like [Glycine max]

 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 186/218 (85%), Gaps = 3/218 (1%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+T  + LEV+GH+LQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEPDRLNSPTTFEMPLEVMGHELQFSQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG 120
           +KLKGKRVIELGAGCGV+G GMALLGC+VI TDQ EVLPLL+RNVE N SRI+Q NP S 
Sbjct: 61  AKLKGKRVIELGAGCGVSGIGMALLGCDVIVTDQKEVLPLLQRNVERNISRITQKNPES- 119

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
              GSI+  EL WG+E HIKAV PPFDYIIGTDVVY EHLLEPLLQTI ALSGP+TTI+L
Sbjct: 120 --FGSIKVAELQWGDESHIKAVGPPFDYIIGTDVVYVEHLLEPLLQTILALSGPRTTIML 177

Query: 181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 218
           GYEIRSTSVHE+MLQ WK NF+VK V K+K    + +P
Sbjct: 178 GYEIRSTSVHEKMLQKWKRNFDVKTVAKSKMDETFQHP 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.878	0.617	0.345	6.6e-26
TAIR|locus:2167618	234	AT5G44170 "AT5G44170" [Arabido	0.833	0.790	0.330	3.8e-23
RGD|1306228	274	Mettl21d "methyltransferase li	0.765	0.620	0.356	6.3e-21
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.765	0.745	0.361	1.7e-20
UNIPROTKB|Q9H867	229	METTL21D "Protein-lysine methy	0.770	0.746	0.340	4.4e-20
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.756	0.770	0.370	1.2e-19
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.779	0.775	0.329	1.5e-19
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.743	0.756	0.343	3.2e-17
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.752	0.766	0.347	5.3e-17
RGD|1311824	218	Mettl21a "methyltransferase li	0.752	0.766	0.336	5.3e-17

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 74/214 (34%), Positives = 114/214 (53%)

Query:     6 LNSPSTSVINLEVLGHQLQFSQDPNSKHL----GTTVWDASVVFVKYLEKNCRKGRFCPS 61
             L + S+  + L+  GH L   Q P S +     G+ +WD+ VV  K+LE +         
Sbjct:    86 LVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVL--- 142

Query:    62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGN 121
              L+GK+++ELG+GCG+ G   ALLG N + TD  + L LLK+N++ N  R        GN
Sbjct:   143 SLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHR--------GN 194

Query:   122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181
               GS    EL WG++     + P  DY++G+DV+Y+E  +  L++T+  L   +TTI L 
Sbjct:   195 TRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLS 254

Query:   182 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMW 215
              E+R+ +V E  L+    +F +  V    E T W
Sbjct:   255 GELRNDAVLEYFLETALKDFAIGRV----EQTQW 284

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 68/206 (33%), Positives = 103/206 (50%)

Query:    13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEK----NCRKGRFCPSK------ 62
             VI+L V G +L   QD  S H+GT+VW  S++  K+ E+    +       P+       
Sbjct:     8 VIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFD 67

Query:    63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSGN 121
              + +R IELG GCGVAG    LLG   ++ TD   V+P LK N++ N + + +       
Sbjct:    68 FRRRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTALGK------- 120

Query:   122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 181
                S++   + W N D I A+ PPFD +I  DVVY E  +  L+  +  L      +LLG
Sbjct:   121 ---SLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLG 177

Query:   182 YEIRSTSVHEQMLQMWKSNFNVKLVP 207
             Y+IRS    +   ++    F ++ VP
Sbjct:   178 YQIRSPEADKLFWELCDIVFKIEKVP 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 67/188 (35%), Positives = 100/188 (53%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    77 QQYGSGGVGCVVWDAAIVLAKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 135

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146
              +VI TD  E+  LLK N+  N   ++          GS+QA  L WG  D I+ +  P 
Sbjct:   136 ADVIVTDLEELQDLLKMNINMNKHLVT----------GSVQAKVLKWG--DDIEDLMSP- 182

Query:   147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFN 202
             DYI+  D +Y E  LEPLL+T+  LSG +T+I+  YE R+      + ++  ++ + +F+
Sbjct:   183 DYILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEKKYFELLQLDFD 242

Query:   203 VKLVPKAK 210
              + +P  K
Sbjct:   243 FEKIPLDK 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 68/188 (36%), Positives = 101/188 (53%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146
              +VI TD  E+  LLK N++ N   ++          GS+QA  L WG ED I+ +  P 
Sbjct:    90 ADVIVTDLEELQDLLKMNIDMNKHLVT----------GSVQAKVLKWG-ED-IEDLMSP- 136

Query:   147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFN 202
             DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + +F+
Sbjct:   137 DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFD 196

Query:   203 VKLVPKAK 210
              + +P  K
Sbjct:   197 FEEIPLDK 204

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 64/188 (34%), Positives = 99/188 (52%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF 146
              +V+ TD  E+  LLK N+  N   ++          GS+QA  L WG E  I+    P 
Sbjct:    90 ADVVVTDLEELQDLLKMNINMNKHLVT----------GSVQAKVLKWGEE--IEGFPSPP 137

Query:   147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFN 202
             D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + +F+
Sbjct:   138 DFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFD 197

Query:   203 VKLVPKAK 210
              + +P  K
Sbjct:   198 FEKIPLEK 205

GO:0005575 "cellular_component" evidence=ND

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 69/186 (37%), Positives = 91/186 (48%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H+++ SQD     +   VWDA+VV   +LE     G+     LKGKRVIELGAG G+ G 
Sbjct:    29 HRIRLSQDWKRLGVAAVVWDAAVVLCMFLEM----GKV---DLKGKRVIELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140
               ALLG NV  TD+   L  L  NV  N  +  Q          ++Q  EL WG    + 
Sbjct:    82 VAALLGANVTITDREPALEFLTANVHENIPQGRQK---------AVQVSELTWGENLDLY 132

Query:   141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 200
                  +D I+G D+VY E     LLQT+  LS   T +LL   IR     E+ L   +  
Sbjct:   133 PQGG-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYER-DERFLTELRQR 190

Query:   201 FNVKLV 206
             F+V+ V
Sbjct:   191 FSVQEV 196

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 63/191 (32%), Positives = 97/191 (50%)

Query:    34 LGTTVWDASVVFVKYLEKN--CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
             +G  VWDA++V  KYLE    C  G    S    K +IELGAG G+ G   A LG NV  
Sbjct:    33 VGCVVWDAAIVLSKYLETEQFCSIGSGV-SMWSSKNIIELGAGTGLVGLVAASLGANVTL 91

Query:    92 TDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIG 151
             TD  ++ PLL+ N++ N   I           GS+ A  L WG   ++    P   YI+ 
Sbjct:    92 TDLEDLQPLLQLNIKKNQQLIHT---------GSVTAKVLKWGA--NVDDFLPHPHYILM 140

Query:   152 TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM----LQMWKSNFNVKLVP 207
              D +Y E  +EPL++T+  L+GP+T I+  YE R+  V+ ++     ++   +F  + + 
Sbjct:   141 ADCIYYEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQDFQSEEIS 200

Query:   208 KAKESTMWGNP 218
               K+   + +P
Sbjct:   201 SEKQDPEFNSP 211

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 65/189 (34%), Positives = 91/189 (48%)

Query:    21 HQLQFSQDPNSKHLGTT--VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
             H +Q  QD   +HLG    VWDA++V   YLE           +L+G+  +ELGAG G+ 
Sbjct:    29 HTIQIRQD--WRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLV 79

Query:    79 GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH 138
             G   ALLG +V  TD+   L  LK NV+ N      + P   ++       EL WG   +
Sbjct:    80 GIVAALLGAHVTITDRKVALEFLKSNVQAN------LPP---HIQTKTVVKELTWGQ--N 128

Query:   139 IKAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 197
             + + +P  FD I+G D++Y E     LLQT+  L    + ILL   IR        L M 
Sbjct:   129 LGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAML 187

Query:   198 KSNFNVKLV 206
             +  F V+ V
Sbjct:   188 ERQFTVRKV 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 65/187 (34%), Positives = 86/187 (45%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H +Q  QD     +   VWDA+VV   YLE           +L+G   +ELGAG G+ G 
Sbjct:    29 HTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGA-------VELRGCSAVELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140
               ALLG  V  TD+   L  LK NVE N      + P   ++       EL WG   +++
Sbjct:    82 VAALLGAQVTITDRKVALEFLKSNVEAN------LPP---HIQPKAVVKELTWGQ--NLE 130

Query:   141 AVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199
             + +P  FD I+G DV+Y E     LLQT+  L    + ILL   IR        L M + 
Sbjct:   131 SFSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DSNFLTMLER 189

Query:   200 NFNVKLV 206
              F V  V
Sbjct:   190 QFTVSKV 196

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 63/187 (33%), Positives = 87/187 (46%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H +Q  QD     +   VWDA++V   YLE           +L+G   +ELGAG G+ G 
Sbjct:    29 HTIQIRQDWGRLGVAAVVWDAAIVLSTYLEMGA-------VELRGCSAVELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK 140
               ALLG +V  TD+   L  LK NVE N      + P   ++   +   EL WG   ++ 
Sbjct:    82 VAALLGAHVTITDRKVALEFLKSNVEAN------LPP---HIQPKVVVKELTWGQ--NLD 130

Query:   141 AVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 199
             + +P  FD I+G D++Y E     LLQT+  L    + ILL   IR        L M + 
Sbjct:   131 SFSPGEFDLILGADIIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DNNFLTMLER 189

Query:   200 NFNVKLV 206
              F V  V
Sbjct:   190 QFTVSKV 196

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022174001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	3e-36
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	4e-06
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	4e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.001

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score =  124 bits (314), Expect = 3e-36
 Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 18/155 (11%)

Query: 35  GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITT 92
           G  VWDA+VV  KYLE    K     + L G  V+ELG+G G+ G  +ALL  G +V  T
Sbjct: 18  GGHVWDAAVVLSKYLEM---KITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTIT 74

Query: 93  DQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP-PFDYIIG 151
           D  E + L+K+N+E N             L   + A  LDWG +       P P D I+ 
Sbjct: 75  DLEEAIELMKKNIELN------------GLSSKVTAKVLDWGEDLPDDVFDPHPVDLILA 122

Query: 152 TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 186
            D VY E     L +T+  L G +T IL+ Y+ R 
Sbjct: 123 ADCVYNEDSFPLLEKTLNDLLGKETVILVAYKKRR 157

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 29/145 (20%)

Query: 39  WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEV 97
           W    V  +Y++ +       P  ++GKRV++LGAG G+     A  G   V+  D    
Sbjct: 61  WAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113

Query: 98  L-PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY 156
           L   ++ N   N                SI     D           P FD ++  D+ Y
Sbjct: 114 LEQAIRLNAAANGV--------------SILFTHADLIGSP------PAFDLLLAGDLFY 153

Query: 157 AEHLLEPLLQTIFALSGPKTTILLG 181
                + L+     L+     +L+G
Sbjct: 154 NHTEADRLIPWKDRLAEAGAAVLVG 178

Length = 218

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLG-CNVITTD-QIEVLPLLKRN-------VEWNTSRIS 113
           L+GK V++LGAG G+   G ALLG   V+  D   E L + + N       VE+  + +S
Sbjct: 44  LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103

Query: 114 Q---------MNP 117
                     MNP
Sbjct: 104 DFRGKFDTVIMNP 116

Length = 198

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 33/126 (26%)

Query: 57  RFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116
           R  P    G RV+++G G G+    +   G +V   D                       
Sbjct: 15  RLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVD----------------------- 51

Query: 117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGP 174
           P    +L        D             +D I   +V+  EHL +P  LLQ +  L  P
Sbjct: 52  PSPAAVLIFSLFDAPDPAVLAG------KYDLITAFEVL--EHLPDPPALLQQLRELLKP 103

Query: 175 KTTILL 180
              +L+
Sbjct: 104 GGVLLI 109

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 22/120 (18%)

Query: 64  KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG 120
            G RV+++G G G     +A L  G  V   D   E+L L + N +              
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-------------L 47

Query: 121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 180
            L   I  V+ D  +      +   FD +    +      L  LL  + +L  P   ++L
Sbjct: 48  ALGPRITFVQGDAPDAL---DLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.97
COG4123	248	Predicted O-methyltransferase [General function pr	99.83
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.82
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.82
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.81
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.81
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.8
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.8
COG3897	218	Predicted methyltransferase [General function pred	99.76
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.74
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.73
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.72
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.72
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.72
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.7
PRK14967	223	putative methyltransferase; Provisional	99.69
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.67
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.66
PRK11207	197	tellurite resistance protein TehB; Provisional	99.64
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.63
PLN02244	340	tocopherol O-methyltransferase	99.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.62
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.62
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.61
PRK14968	188	putative methyltransferase; Provisional	99.61
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.58
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.57
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.56
PRK12335	287	tellurite resistance protein TehB; Provisional	99.56
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.56
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.56
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.56
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.55
COG2890	280	HemK Methylase of polypeptide chain release factor	99.55
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.54
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.54
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.54
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.53
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.52
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.52
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.51
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.51
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.5
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.5
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.49
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.49
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.49
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.49
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.48
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.48
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.48
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.47
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
PLN02490	340	MPBQ/MSBQ methyltransferase	99.46
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.46
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.46
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.45
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.44
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.44
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.44
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.43
PRK04266	226	fibrillarin; Provisional	99.43
PRK08317	241	hypothetical protein; Provisional	99.43
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.42
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.42
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.42
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.42
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.41
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.41
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.41
PRK05785	226	hypothetical protein; Provisional	99.41
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.41
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.39
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.39
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.39
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.38
PLN02672	1082	methionine S-methyltransferase	99.38
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.35
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.34
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.34
PRK07402	196	precorrin-6B methylase; Provisional	99.34
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.34
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.33
PRK06922	677	hypothetical protein; Provisional	99.31
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.31
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.3
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.3
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.3
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.3
PLN02336	475	phosphoethanolamine N-methyltransferase	99.3
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.3
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.29
KOG4300	252	consensus Predicted methyltransferase [General fun	99.28
KOG2904	328	consensus Predicted methyltransferase [General fun	99.28
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.27
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.27
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.25
PHA03412	241	putative methyltransferase; Provisional	99.25
PHA03411	279	putative methyltransferase; Provisional	99.25
PTZ00146	293	fibrillarin; Provisional	99.25
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.24
PRK06202	232	hypothetical protein; Provisional	99.24
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.23
PLN03075	296	nicotianamine synthase; Provisional	99.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.22
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.2
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.2
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.2
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.19
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.19
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.19
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.18
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.18
KOG2920	282	consensus Predicted methyltransferase [General fun	99.17
TIGR03438	301	probable methyltransferase. This model represents	99.17
KOG1271	227	consensus Methyltransferases [General function pre	99.16
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.15
PRK04457	262	spermidine synthase; Provisional	99.15
TIGR00438	188	rrmJ cell division protein FtsJ.	99.14
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.14
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.14
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.13
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.13
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.1
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.09
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.07
PLN02476	278	O-methyltransferase	99.05
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.03
PRK00811	283	spermidine synthase; Provisional	99.0
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.97
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.97
COG4122	219	Predicted O-methyltransferase [General function pr	98.97
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.97
PRK04148	134	hypothetical protein; Provisional	98.96
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.92
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.92
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.91
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.9
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
KOG2899	288	consensus Predicted methyltransferase [General fun	98.89
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.88
PRK03612	521	spermidine synthase; Provisional	98.88
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.84
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.84
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.83
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.82
KOG2361	264	consensus Predicted methyltransferase [General fun	98.82
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.8
KOG3010	261	consensus Methyltransferase [General function pred	98.79
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.78
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.78
COG2520	341	Predicted methyltransferase [General function pred	98.73
PRK01581	374	speE spermidine synthase; Validated	98.7
PLN02366	308	spermidine synthase	98.69
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.69
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.68
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.65
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.62
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.62
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.61
COG2521	287	Predicted archaeal methyltransferase [General func	98.61
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.6
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.6
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.57
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.55
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.52
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.49
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.47
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.45
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.41
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.36
PLN02823	336	spermine synthase	98.36
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.33
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.31
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.28
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.27
KOG2940	325	consensus Predicted methyltransferase [General fun	98.27
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.25
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.24
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.24
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.22
PRK00536	262	speE spermidine synthase; Provisional	98.21
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.19
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.18
COG4076	252	Predicted RNA methylase [General function predicti	98.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.16
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.09
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.06
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.01
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.99
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.98
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.97
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.95
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.84
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.84
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.84
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.82
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.81
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.81
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.8
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.79
KOG2497	262	consensus Predicted methyltransferase [General fun	97.77
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.76
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.72
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.7
PRK10742	250	putative methyltransferase; Provisional	97.65
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.63
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.63
PHA01634	156	hypothetical protein	97.55
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.54
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.53
KOG2730	263	consensus Methylase [General function prediction o	97.5
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.48
PF13679	141	Methyltransf_32: Methyltransferase domain	97.48
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.37
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.36
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.36
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.34
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.13
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.12
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.02
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.88
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.88
COG1568	354	Predicted methyltransferases [General function pre	96.62
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.54
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.47
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.47
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.46
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.44
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.42
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.41
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.27
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.23
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.21
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.19
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.17
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.14
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.11
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.04
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.95
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.93
KOG3115	249	consensus Methyltransferase-like protein [General	95.92
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.91
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.86
PRK11524	284	putative methyltransferase; Provisional	95.83
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.8
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.79
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.77
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.67
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.66
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.63
PRK13699	227	putative methylase; Provisional	95.4
COG2961	279	ComJ Protein involved in catabolism of external DN	95.37
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.34
KOG1227	351	consensus Putative methyltransferase [General func	95.05
KOG1331	293	consensus Predicted methyltransferase [General fun	95.03
KOG3350	217	consensus Uncharacterized conserved protein [Funct	94.79
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.68
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.58
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.3
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.15
COG0286	489	HsdM Type I restriction-modification system methyl	93.97
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.89
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	93.88
KOG2912	419	consensus Predicted DNA methylase [Function unknow	93.82
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.61
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.48
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.41
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	93.03
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.72
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	92.59
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.22
KOG3924	419	consensus Putative protein methyltransferase invol	92.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.21
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.19
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.14
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.12
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.03
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.02
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.84
PRK11524	284	putative methyltransferase; Provisional	91.8
PF03269	177	DUF268: Caenorhabditis protein of unknown function	91.62
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	91.55
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.46
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.06
PF08468	155	MTS_N: Methyltransferase small domain N-terminal;	90.73
PRK12548	289	shikimate 5-dehydrogenase; Provisional	90.26
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.21
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.13
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.05
PRK06124	256	gluconate 5-dehydrogenase; Provisional	89.76
PRK06701	290	short chain dehydrogenase; Provisional	89.04
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	88.94
PRK10458	467	DNA cytosine methylase; Provisional	88.86
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	88.86
COG4798	238	Predicted methyltransferase [General function pred	88.8
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.68
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	88.33
PRK06139	330	short chain dehydrogenase; Provisional	88.26
COG1255	129	Uncharacterized protein conserved in archaea [Func	88.25
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.13
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	87.88
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.83
PRK08339	263	short chain dehydrogenase; Provisional	87.76
PRK07326	237	short chain dehydrogenase; Provisional	87.74
COG1565	370	Uncharacterized conserved protein [Function unknow	87.56
PRK05867	253	short chain dehydrogenase; Provisional	87.36
PRK08265	261	short chain dehydrogenase; Provisional	87.31
PRK07109	334	short chain dehydrogenase; Provisional	87.22
PRK07806	248	short chain dehydrogenase; Provisional	87.16
PRK13699	227	putative methylase; Provisional	86.55
PRK05854	313	short chain dehydrogenase; Provisional	86.45
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.4
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	86.39
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	86.27
KOG0725	270	consensus Reductases with broad range of substrate	86.11
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	86.1
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	86.07
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	85.91
PRK08862	227	short chain dehydrogenase; Provisional	85.82
PRK08324	681	short chain dehydrogenase; Validated	85.75
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	85.73
PRK05866	293	short chain dehydrogenase; Provisional	85.57
PLN02586	360	probable cinnamyl alcohol dehydrogenase	85.47
PRK08213	259	gluconate 5-dehydrogenase; Provisional	85.38
PRK07097	265	gluconate 5-dehydrogenase; Provisional	85.35
PRK05876	275	short chain dehydrogenase; Provisional	85.32
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	85.3
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.23
PRK06125	259	short chain dehydrogenase; Provisional	85.2
PRK07063	260	short chain dehydrogenase; Provisional	85.11
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	85.04
PRK06949	258	short chain dehydrogenase; Provisional	85.04
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	85.03
PRK06172	253	short chain dehydrogenase; Provisional	84.98
PRK07035	252	short chain dehydrogenase; Provisional	84.79
PRK07814	263	short chain dehydrogenase; Provisional	84.63
PRK08703	239	short chain dehydrogenase; Provisional	84.6
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.54
PRK06194	287	hypothetical protein; Provisional	84.48
PRK08589	272	short chain dehydrogenase; Validated	84.44
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	84.34
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	84.22
PRK08267	260	short chain dehydrogenase; Provisional	84.02
PRK07478	254	short chain dehydrogenase; Provisional	83.76
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	83.71
PRK07062	265	short chain dehydrogenase; Provisional	83.66
PRK09291	257	short chain dehydrogenase; Provisional	83.63
PRK06181	263	short chain dehydrogenase; Provisional	83.55
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	83.54
PRK07890	258	short chain dehydrogenase; Provisional	83.46
PRK08085	254	gluconate 5-dehydrogenase; Provisional	83.45
COG3315	297	O-Methyltransferase involved in polyketide biosynt	83.39
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.32
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.32
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	83.11
PRK09242	257	tropinone reductase; Provisional	82.81
PRK06128	300	oxidoreductase; Provisional	82.55
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	82.41
PLN02178	375	cinnamyl-alcohol dehydrogenase	82.24
PRK07523	255	gluconate 5-dehydrogenase; Provisional	82.19
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	82.14
PLN02253	280	xanthoxin dehydrogenase	81.68
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	81.42
PRK07791	286	short chain dehydrogenase; Provisional	81.41
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	81.3
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.04
PRK07102	243	short chain dehydrogenase; Provisional	80.98
PRK08277	278	D-mannonate oxidoreductase; Provisional	80.95
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	80.77
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	80.68
COG0863	302	DNA modification methylase [DNA replication, recom	80.47
PRK06720	169	hypothetical protein; Provisional	80.34
PRK05872	296	short chain dehydrogenase; Provisional	80.2
PRK08303	305	short chain dehydrogenase; Provisional	80.08
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.01

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.97  E-value=9e-31  Score=202.55  Aligned_cols=167  Identities=39%  Similarity=0.649  Sum_probs=103.7

Q ss_pred             CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhh
Q 027530           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV   97 (222)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~   97 (222)
                      +..++|.++. ...+|.++|+++.+|++|+..+.... ..+..+++++|||||||+|++|+.++++  +.+|++||++++
T Consensus         3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~   80 (173)
T PF10294_consen    3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV   80 (173)
T ss_dssp             ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred             cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence            4567888887 45999999999999999999853110 0145788999999999999999999999  568999999779


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530           98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  176 (222)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g  176 (222)
                      ++.++.|++.|+..          ...++.+..++|++...... ...+||+|+++|++|+.+.+++|++++.++++++|
T Consensus        81 l~~l~~Ni~~N~~~----------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~  150 (173)
T PF10294_consen   81 LELLRRNIELNGSL----------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNG  150 (173)
T ss_dssp             HHHHHHHHHTT------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-T
T ss_pred             hHHHHHHHHhcccc----------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCC
Confidence            99999999998731          23588999999998542222 24689999999999999999999999999999999


Q ss_pred             EEEEEEEEcChhHHHHHHHHHhc
Q 027530          177 TILLGYEIRSTSVHEQMLQMWKS  199 (222)
Q Consensus       177 ~~~l~~~~r~~~~~~~f~~~~~~  199 (222)
                      .++++++.|... ...|++++++
T Consensus       151 ~vl~~~~~R~~~-~~~F~~~~~k  172 (173)
T PF10294_consen  151 KVLLAYKRRRKS-EQEFFDRLKK  172 (173)
T ss_dssp             TEEEEEE-S-TG-GCHHHHHH--
T ss_pred             EEEEEeCEecHH-HHHHHHHhhh
Confidence            999999998654 4789888753

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.83  E-value=8.4e-20  Score=146.56  Aligned_cols=162  Identities=23%  Similarity=0.287  Sum_probs=129.1

Q ss_pred             EEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEE
Q 027530           14 INLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVIT   91 (222)
Q Consensus        14 ~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~   91 (222)
                      ++--+.++.+.|.|++.++.+|..    +++|+.|..-          . ..++|||||||+|++++++|++ . +++++
T Consensus         9 ~~~~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~----------~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~   73 (248)
T COG4123           9 IDNLFTFKQFFIIQDRCGFRYGTD----AILLAAFAPV----------P-KKGRILDLGAGNGALGLLLAQRTEKAKIVG   73 (248)
T ss_pred             hcccccccceEEEeCCCccccccH----HHHHHhhccc----------c-cCCeEEEecCCcCHHHHHHhccCCCCcEEE
Confidence            333346788999999999999988    9999999852          2 3679999999999999999987 4 68999


Q ss_pred             ecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----------
Q 027530           92 TDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------  159 (222)
Q Consensus        92 ~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------  159 (222)
                      +|+ +++.+.|++|++.|.+.            +++++.+.|..+..... ...+||+|++|+++|...           
T Consensus        74 VEiq~~~a~~A~~nv~ln~l~------------~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~  140 (248)
T COG4123          74 VEIQEEAAEMAQRNVALNPLE------------ERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAI  140 (248)
T ss_pred             EEeCHHHHHHHHHHHHhCcch------------hceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhh
Confidence            999 56999999999999864            79999997776553322 234799999999998632           


Q ss_pred             -------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc-CCeEEEe
Q 027530          160 -------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  206 (222)
Q Consensus       160 -------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~-~~~v~~v  206 (222)
                             .++++++...++|||+|.++++++.-   ...++.+.++. +|.+..+
T Consensus       141 Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         141 ARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             hhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHHhcCCCceEE
Confidence                   37889999999999999999988653   34567777754 6665443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.82  E-value=7e-19  Score=135.80  Aligned_cols=136  Identities=26%  Similarity=0.337  Sum_probs=106.8

Q ss_pred             EEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhH
Q 027530           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL   98 (222)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l   98 (222)
                      ++++.+.|+.+..+ .+-.++.+|++++...           ++++|||||||+|.+|+.+++.+..  |+++|+ ++++
T Consensus         1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~   68 (170)
T PF05175_consen    1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL   68 (170)
T ss_dssp             EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred             CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            47888889877533 4455688999999764           5679999999999999999998765  999999 6699


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcC
Q 027530           99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSG  173 (222)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~  173 (222)
                      +.+++|++.|++.             ++++...|+.+..    .+.+||+|++++|++...     ....+++...++|+
T Consensus        69 ~~a~~n~~~n~~~-------------~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk  131 (170)
T PF05175_consen   69 ELAKRNAERNGLE-------------NVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK  131 (170)
T ss_dssp             HHHHHHHHHTTCT-------------TEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHHhcCcc-------------ccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence            9999999999853             3888887765432    258999999999987643     36778999999999


Q ss_pred             CCeEEEEEEEEcC
Q 027530          174 PKTTILLGYEIRS  186 (222)
Q Consensus       174 ~~g~~~l~~~~r~  186 (222)
                      |||.++++.....
T Consensus       132 ~~G~l~lv~~~~~  144 (170)
T PF05175_consen  132 PGGRLFLVINSHL  144 (170)
T ss_dssp             EEEEEEEEEETTS
T ss_pred             CCCEEEEEeecCC
Confidence            9999998776433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=3.4e-19  Score=146.62  Aligned_cols=157  Identities=24%  Similarity=0.338  Sum_probs=121.0

Q ss_pred             eEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhH
Q 027530           21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVL   98 (222)
Q Consensus        21 ~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l   98 (222)
                      .++.|.-+| +..+|+-.+|++.+..+++.+.         ..+|++|||+|||+|.++|+++++|++ |+++|+ +.++
T Consensus       129 ~~~~i~lDP-GlAFGTG~HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV  198 (300)
T COG2264         129 DELNIELDP-GLAFGTGTHPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV  198 (300)
T ss_pred             CceEEEEcc-ccccCCCCChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH
Confidence            678889999 5566777779999999999865         458899999999999999999999995 999999 5599


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530           99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  178 (222)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  178 (222)
                      +.+++|+++|++..            .+....   ..... .....+||+|++|= +  .+.+..+...+.++++|||.+
T Consensus       199 ~aa~eNa~~N~v~~------------~~~~~~---~~~~~-~~~~~~~DvIVANI-L--A~vl~~La~~~~~~lkpgg~l  259 (300)
T COG2264         199 EAARENARLNGVEL------------LVQAKG---FLLLE-VPENGPFDVIVANI-L--AEVLVELAPDIKRLLKPGGRL  259 (300)
T ss_pred             HHHHHHHHHcCCch------------hhhccc---ccchh-hcccCcccEEEehh-h--HHHHHHHHHHHHHHcCCCceE
Confidence            99999999999641            111111   11111 11246999999984 3  556678999999999999999


Q ss_pred             EEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530          179 LLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       179 ~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      +++.....+.  +...+.+ +.+|.+..+..
T Consensus       260 IlSGIl~~q~--~~V~~a~~~~gf~v~~~~~  288 (300)
T COG2264         260 ILSGILEDQA--ESVAEAYEQAGFEVVEVLE  288 (300)
T ss_pred             EEEeehHhHH--HHHHHHHHhCCCeEeEEEe
Confidence            9999876653  5666666 56888765543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.7e-20  Score=138.95  Aligned_cols=158  Identities=24%  Similarity=0.334  Sum_probs=122.4

Q ss_pred             cccccc-ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHH
Q 027530           32 KHLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        32 ~~~g~~-~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG-~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~  106 (222)
                      .++|.. +||+..+||.++..+       +..++|++|||||.| +|+.|+++|....  .|..||- +++++..++-.-
T Consensus         3 dntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~   75 (201)
T KOG3201|consen    3 DNTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRN   75 (201)
T ss_pred             CCCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHh
Confidence            346665 999999999999988       778899999999999 4999999997754  6999998 569999988777


Q ss_pred             HhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          107 WNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       107 ~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .|...          ....+.+....|.... .......||+|+++||+|..+.++.|+++|+.+|+|.|+.++..+.|.
T Consensus        76 ~n~~s----------~~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen   76 SNMAS----------SLTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             ccccc----------ccceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            77432          1223333332222221 122356899999999999999999999999999999999888777665


Q ss_pred             hhHHHHHHHHHh-cCCeEEEecC
Q 027530          187 TSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       187 ~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                      . .++.|++.+. .+|.+..-+.
T Consensus       145 ~-sL~kF~de~~~~gf~v~l~en  166 (201)
T KOG3201|consen  145 Q-SLQKFLDEVGTVGFTVCLEEN  166 (201)
T ss_pred             c-hHHHHHHHHHhceeEEEeccc
Confidence            5 5899999985 5888865443

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.81  E-value=5.9e-19  Score=146.29  Aligned_cols=154  Identities=22%  Similarity=0.352  Sum_probs=115.8

Q ss_pred             cCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hh
Q 027530           19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE   96 (222)
Q Consensus        19 ~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~   96 (222)
                      .+.++.|..+| +..+|+-.++++.+..++|...         ..+|++|||+|||+|+++++++++|+ +|+++|+ +.
T Consensus       126 ~~~~~~I~idP-g~AFGTG~H~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~  195 (295)
T PF06325_consen  126 PPDEIVIEIDP-GMAFGTGHHPTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPL  195 (295)
T ss_dssp             STTSEEEEEST-TSSS-SSHCHHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCH
T ss_pred             CCCcEEEEECC-CCcccCCCCHHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHH
Confidence            45678888899 5556666679999999999875         45778999999999999999999999 5999999 66


Q ss_pred             hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530           97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  176 (222)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g  176 (222)
                      +++.+++|++.|++.            .++.+.    . ..+  ....+||+|++|=.   .+.+..+...+.++++|+|
T Consensus       196 Av~~a~~N~~~N~~~------------~~~~v~----~-~~~--~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G  253 (295)
T PF06325_consen  196 AVEAARENAELNGVE------------DRIEVS----L-SED--LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGG  253 (295)
T ss_dssp             HHHHHHHHHHHTT-T------------TCEEES----C-TSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEE
T ss_pred             HHHHHHHHHHHcCCC------------eeEEEE----E-ecc--cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCC
Confidence            999999999999974            344442    1 111  12489999999833   3455678888888999999


Q ss_pred             EEEEEEEEcChhHHHHHHHHHhcCCeEEEe
Q 027530          177 TILLGYEIRSTSVHEQMLQMWKSNFNVKLV  206 (222)
Q Consensus       177 ~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v  206 (222)
                      .++++.......  ..+.+.++++|.+...
T Consensus       254 ~lIlSGIl~~~~--~~v~~a~~~g~~~~~~  281 (295)
T PF06325_consen  254 YLILSGILEEQE--DEVIEAYKQGFELVEE  281 (295)
T ss_dssp             EEEEEEEEGGGH--HHHHHHHHTTEEEEEE
T ss_pred             EEEEccccHHHH--HHHHHHHHCCCEEEEE
Confidence            999998877653  5666666668877443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.80  E-value=1.4e-19  Score=143.14  Aligned_cols=109  Identities=21%  Similarity=0.262  Sum_probs=93.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+.++++.              +.+.+..   .+++..
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--------------i~y~~~~---~edl~~  120 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--------------IDYRQAT---VEDLAS  120 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--------------ccchhhh---HHHHHh
Confidence            68999999999999999999999999999999 55999999999988752              3344322   233333


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                      ..++||+|++++++.|.++...+++.+.+++||||.++++...|+..
T Consensus       121 ~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         121 AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            34799999999999999999999999999999999999999998874

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.80  E-value=2e-18  Score=138.64  Aligned_cols=168  Identities=31%  Similarity=0.458  Sum_probs=127.5

Q ss_pred             CccccccccchHHHHHHHHhhhccCCCCCCCC--C--CCCeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHH
Q 027530           31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV  105 (222)
Q Consensus        31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~--~--~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~  105 (222)
                      .-.+...+|+++..+++++....+........  +  +.++|||||+|||++|+.+|. .+++|+.+|.+..+..++.|.
T Consensus        49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~  128 (248)
T KOG2793|consen   49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR  128 (248)
T ss_pred             ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence            45677889999999999998764321110001  1  245699999999999999998 578999999999888888888


Q ss_pred             HHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC-ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          106 EWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       106 ~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..|.....+       ....+.+..++|++........+. ||+|+++|++|..+..+.++.++..+|..+++++++++.
T Consensus       129 ~~~~~~l~~-------~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  129 DKNNIALNQ-------LGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             hhhhhhhhh-------cCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence            777655321       234789999999998766544445 999999999999999999999999999998999999999


Q ss_pred             cChhHHHH---HHHHHhcCCeEEE
Q 027530          185 RSTSVHEQ---MLQMWKSNFNVKL  205 (222)
Q Consensus       185 r~~~~~~~---f~~~~~~~~~v~~  205 (222)
                      |.....+.   |..+....+.+..
T Consensus       202 r~~~~~~~~~~~~~~~~~~~~v~~  225 (248)
T KOG2793|consen  202 RRDAAWEIEVLLFKKDLKIFDVVQ  225 (248)
T ss_pred             ccchHHHHHHHHhhhhhccceeee
Confidence            88643333   3333334555543

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.76  E-value=1.2e-18  Score=133.28  Aligned_cols=156  Identities=23%  Similarity=0.377  Sum_probs=121.2

Q ss_pred             CCCCCCcceEEEeEcCeEEEEeeCCC--------CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCcc
Q 027530            5 RLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG   76 (222)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~q~~~--------~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G   76 (222)
                      +..+|-...+.++..+..-...+...        ...++...|.+++.+|+|+..+       |...+|++|||+|+|+|
T Consensus        19 ~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gagsg   91 (218)
T COG3897          19 LLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGSG   91 (218)
T ss_pred             cCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeecccccC
Confidence            34444444566655544333332221        3457889999999999999999       88999999999999999


Q ss_pred             HHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc
Q 027530           77 VAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV  154 (222)
Q Consensus        77 ~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~  154 (222)
                      +++|++++.|+. |+.+|+ +..+..++.|++.|+.              .+.+...|...      .+..||+|+++|+
T Consensus        92 LvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--------------~i~~~~~d~~g------~~~~~Dl~LagDl  151 (218)
T COG3897          92 LVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--------------SILFTHADLIG------SPPAFDLLLAGDL  151 (218)
T ss_pred             hHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--------------eeEEeeccccC------CCcceeEEEeece
Confidence            999999999995 999999 6688899999999984              45666544332      3678999999999


Q ss_pred             ccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          155 VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       155 ~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      +|+......++.+..++...|-.+++..+.|..
T Consensus       152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence            999999999999766666667777777777765

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.74  E-value=1.3e-16  Score=136.68  Aligned_cols=147  Identities=13%  Similarity=0.126  Sum_probs=111.8

Q ss_pred             cceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CE
Q 027530           11 TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CN   88 (222)
Q Consensus        11 ~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~   88 (222)
                      ..++++++.+..+++...++.+..+ .+-.++.+|.+++..          . .+.+|||||||+|.+++.+++.+  ++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~gVFs~~-~LD~GtrllL~~lp~----------~-~~~~VLDLGCGtGvi~i~la~~~P~~~  254 (378)
T PRK15001        187 PQTVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLPE----------N-LEGEIVDLGCGNGVIGLTLLDKNPQAK  254 (378)
T ss_pred             CceeEEEEcCceEEEEecCCccCCC-CcChHHHHHHHhCCc----------c-cCCeEEEEeccccHHHHHHHHhCCCCE
Confidence            3467888899999999999876644 566778888887742          2 23589999999999999999874  58


Q ss_pred             EEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----CHH
Q 027530           89 VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLE  162 (222)
Q Consensus        89 v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----~~~  162 (222)
                      |+++|.+ .+++.+++|++.|+..          ...++++...|....    ....+||+|++|++++...     ...
T Consensus       255 V~~vD~S~~Av~~A~~N~~~n~~~----------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~  320 (378)
T PRK15001        255 VVFVDESPMAVASSRLNVETNMPE----------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAW  320 (378)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCcc----------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHH
Confidence            9999995 5999999999988632          112566665443221    1245899999999986532     356


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 027530          163 PLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       163 ~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+++.+.++|+|||.++++..
T Consensus       321 ~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        321 EMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             HHHHHHHHhcccCCEEEEEEe
Confidence            788999999999999999864

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.73  E-value=4e-17  Score=116.96  Aligned_cols=104  Identities=23%  Similarity=0.298  Sum_probs=82.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||||||+|..++.+++  .+++|+++|+ +++++.+++++...+.            ..++++.+.|+ .  ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~i~~~~~d~-~--~~~   65 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL------------SDRITFVQGDA-E--FDP   65 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT------------TTTEEEEESCC-H--GGT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEECcc-c--cCc
Confidence            468999999999999999999  6889999999 6799999999965543            46899999777 1  112


Q ss_pred             ccCCCccEEEEec-cccC---ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d-~~y~---~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...++||+|++.. +..+   .+....+++.+.+.|+|||++++..
T Consensus        66 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   66 DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2356799999998 3321   1345678999999999999998865

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.72  E-value=3.3e-16  Score=130.54  Aligned_cols=156  Identities=20%  Similarity=0.307  Sum_probs=113.5

Q ss_pred             CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhh
Q 027530           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEV   97 (222)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~   97 (222)
                      ...+.+..+| +..+|+..++++.+..+++...         ..++++|||+|||+|.+++.++++|+ +|+++|+ +.+
T Consensus       125 ~~~~~i~ldp-g~aFgtG~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~a  194 (288)
T TIGR00406       125 EDALIIMLDP-GLAFGTGTHPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLA  194 (288)
T ss_pred             CCcEEEEECC-CCcccCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHH
Confidence            4567788888 4455555668888888887653         33678999999999999999999887 7999999 569


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530           98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  177 (222)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  177 (222)
                      ++.+++|+..|++.            .++.+...+   .  .....++||+|+++-+   .+.+..++..+.++|+|||.
T Consensus       195 l~~a~~n~~~n~~~------------~~~~~~~~~---~--~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~  254 (288)
T TIGR00406       195 VESARKNAELNQVS------------DRLQVKLIY---L--EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW  254 (288)
T ss_pred             HHHHHHHHHHcCCC------------cceEEEecc---c--ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence            99999999988753            244444322   1  1123568999998744   33456788999999999999


Q ss_pred             EEEEEEEcChhHHHHHHHHHhcCCeEEEec
Q 027530          178 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  207 (222)
Q Consensus       178 ~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~  207 (222)
                      ++++...+..  ...+.+.++..|.+..+.
T Consensus       255 li~sgi~~~~--~~~v~~~~~~~f~~~~~~  282 (288)
T TIGR00406       255 LILSGILETQ--AQSVCDAYEQGFTVVEIR  282 (288)
T ss_pred             EEEEeCcHhH--HHHHHHHHHccCceeeEe
Confidence            9998765443  355666665557665443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.72  E-value=4.4e-16  Score=121.09  Aligned_cols=138  Identities=20%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +.+|.+++..           .++++|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.++.          
T Consensus         8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------   66 (179)
T TIGR00537         8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV----------   66 (179)
T ss_pred             HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            4566666642           35578999999999999999998889999999 6799999999987752          


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC---------------------HHHHHHHHHHhcCCCeEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------~~~ll~~~~~~l~~~g~~~  179 (222)
                          ++++...|+.+.     ..++||+|+++++++....                     ...+++.+.++|+|||.++
T Consensus        67 ----~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~  137 (179)
T TIGR00537        67 ----GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ  137 (179)
T ss_pred             ----ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence                467777666442     1358999999988764321                     4568889999999999998


Q ss_pred             EEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530          180 LGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  211 (222)
Q Consensus       180 l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~  211 (222)
                      +.......  ...+.+.+ +.+|.++.+....+
T Consensus       138 ~~~~~~~~--~~~~~~~l~~~gf~~~~~~~~~~  168 (179)
T TIGR00537       138 LIQSSLNG--EPDTFDKLDERGFRYEIVAERGL  168 (179)
T ss_pred             EEEeccCC--hHHHHHHHHhCCCeEEEEEEeec
Confidence            88765442  24455555 45888877766543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=3.9e-16  Score=127.97  Aligned_cols=139  Identities=21%  Similarity=0.270  Sum_probs=106.7

Q ss_pred             EcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecch
Q 027530           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI   95 (222)
Q Consensus        18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~   95 (222)
                      ..+.++++...|+.+..+ .+-.++.+|++-+.          ....+ +|||||||.|.+|+.+++...  +++++|.+
T Consensus       124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn  191 (300)
T COG2813         124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN  191 (300)
T ss_pred             hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence            448999999999877665 55667888888774          33444 999999999999999999875  79999995


Q ss_pred             h-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-----HHHHHHHHH
Q 027530           96 E-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIF  169 (222)
Q Consensus        96 ~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~  169 (222)
                      . +++.+++|+..|+..             +..+...+..   +.  ...+||.||+|++++....     ...++....
T Consensus       192 ~~Av~~ar~Nl~~N~~~-------------~~~v~~s~~~---~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~  253 (300)
T COG2813         192 ARAVESARKNLAANGVE-------------NTEVWASNLY---EP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAA  253 (300)
T ss_pred             HHHHHHHHHhHHHcCCC-------------ccEEEEeccc---cc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHH
Confidence            4 999999999999854             2233332222   11  1349999999999986432     346889999


Q ss_pred             HhcCCCeEEEEEEEEcCh
Q 027530          170 ALSGPKTTILLGYEIRST  187 (222)
Q Consensus       170 ~~l~~~g~~~l~~~~r~~  187 (222)
                      ++|++||.++|+.. |..
T Consensus       254 ~~L~~gGeL~iVan-~~l  270 (300)
T COG2813         254 RHLKPGGELWIVAN-RHL  270 (300)
T ss_pred             HhhccCCEEEEEEc-CCC
Confidence            99999999999887 444

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.71  E-value=1.4e-17  Score=132.80  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=87.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCc----eEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGS----IQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~----v~~~~~d~~~~~  137 (222)
                      +.|++|||+|||+|+++..||++|++|+|+|. ++|++.|++....+-..           ...    +.+...+..   
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~-----------~~~~~y~l~~~~~~~E---  153 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL-----------EGAIAYRLEYEDTDVE---  153 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh-----------ccccceeeehhhcchh---
Confidence            45788999999999999999999999999999 66999999885443321           122    333332222   


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                         ...++||.|++++++.|..+...+++.+.++|+|+|+++++...|..
T Consensus       154 ---~~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  154 ---GLTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             ---hcccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence               12456999999999999999999999999999999999999988765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=3.6e-16  Score=118.36  Aligned_cols=109  Identities=22%  Similarity=0.285  Sum_probs=91.6

Q ss_pred             CCCeEEEeCCCccHHHHHHH-Hh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la-~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++.+|||||||+|..+..++ +.  +++|+++|+ +++++.++++++.++.             .++++.+.|+.+....
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-------------~ni~~~~~d~~~l~~~   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-------------DNIEFIQGDIEDLPQE   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-------------TTEEEEESBTTCGCGC
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-------------cccceEEeehhccccc
Confidence            56899999999999999999 44  568999999 6699999999988874             3899999888763321


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                       . .++||+|+++.++++......+++.+.++|+++|.+++.......
T Consensus        70 -~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~  115 (152)
T PF13847_consen   70 -L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHND  115 (152)
T ss_dssp             -S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH
T ss_pred             -c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHH
Confidence             1 279999999999999888999999999999999999998887444

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.70  E-value=2.1e-16  Score=133.06  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+..            ..++.+...+.   ...+.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~------------~~~i~~~~~da---e~l~~  194 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV------------TSTIEYLCTTA---EKLAD  194 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc------------ccceeEEecCH---HHhhh
Confidence            56789999999999999999999999999998 6799999988765432            23677776443   33333


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .+++||+|++.++++|..+...+++.+.++|+|||.++++...+.
T Consensus       195 ~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        195 EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            457899999999999999999999999999999999999876543

>PRK14967 putative methyltransferase; Provisional

Probab=99.69  E-value=3.3e-15  Score=120.20  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=107.9

Q ss_pred             EEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH
Q 027530           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL  100 (222)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~  100 (222)
                      +.+.+.++.+.....    +.++++++...        ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus         7 ~~~~~~~g~~~p~~d----s~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967          7 DALLRAPGVYRPQED----TQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS   74 (223)
T ss_pred             ceeecCCCCcCCCCc----HHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            345555554444433    67788887643        234568999999999999999998876 8999999 569999


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------------
Q 027530          101 LKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------  160 (222)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------  160 (222)
                      +++|+..++.              ++.+...|+.+.    ..+.+||+|+++++++....                    
T Consensus        75 a~~n~~~~~~--------------~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~  136 (223)
T PRK14967         75 ARLNALLAGV--------------DVDVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRA  136 (223)
T ss_pred             HHHHHHHhCC--------------eeEEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHH
Confidence            9999987763              456676666432    12468999999987653211                    


Q ss_pred             -HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530          161 -LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       161 -~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                       +..+++.+.++|+|||++++.......  ...+++.++ .+|.++.+..
T Consensus       137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~  184 (223)
T PRK14967        137 VLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVAS  184 (223)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEe
Confidence             455778888999999999987665432  245555553 4676655544

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.67  E-value=2.9e-15  Score=122.50  Aligned_cols=151  Identities=22%  Similarity=0.351  Sum_probs=108.8

Q ss_pred             CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027530           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV   97 (222)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~   97 (222)
                      ...+.+..+| +..+|.-.++.+..+.+++...         ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+
T Consensus        85 ~~~~~i~i~p-~~afgtg~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~  154 (250)
T PRK00517         85 PDEINIELDP-GMAFGTGTHPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA  154 (250)
T ss_pred             CCeEEEEECC-CCccCCCCCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence            4556677777 3345555578888888888753         346789999999999999999998875 999999 569


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530           98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  177 (222)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  177 (222)
                      ++.+++|++.|++.            ..+.+..   +        +.+||+|+++-.   .+.+..+++.+.++|+|||.
T Consensus       155 l~~A~~n~~~~~~~------------~~~~~~~---~--------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~  208 (250)
T PRK00517        155 VEAARENAELNGVE------------LNVYLPQ---G--------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR  208 (250)
T ss_pred             HHHHHHHHHHcCCC------------ceEEEcc---C--------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence            99999999988742            1232221   1        127999998732   34456788999999999999


Q ss_pred             EEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530          178 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       178 ~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                      ++++......  ...+.+.+. .+|.+..+..
T Consensus       209 lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        209 LILSGILEEQ--ADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             EEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence            9998765433  245555554 5787765433

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.66  E-value=3.3e-15  Score=116.29  Aligned_cols=129  Identities=18%  Similarity=0.165  Sum_probs=94.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++++|||+|||+|..++.++..+  ++|+++|. +++++.+++|++.++.             .++++.+.|+.+..  
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-------------~~i~~i~~d~~~~~--  105 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-------------NNVEIVNGRAEDFQ--  105 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-------------CCeEEEecchhhcc--
Confidence            357899999999999999988765  47999999 5699999999988763             35888887765531  


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCCC
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES  212 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~~  212 (222)
                        ..++||+|++..    ...+..+++.+.++|+|||.+++..............+.+ ..+++....+.-.++
T Consensus       106 --~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       106 --HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             --ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence              256899999865    2456778899999999999998876443333233333333 247777766665554

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=3.9e-15  Score=117.56  Aligned_cols=101  Identities=20%  Similarity=0.258  Sum_probs=81.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.|.+|+++|. +++++.++++++.+++             .++++...|+.+.   . .
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-------------~~v~~~~~d~~~~---~-~   92 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-------------DNLHTAVVDLNNL---T-F   92 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CcceEEecChhhC---C-c
Confidence            5679999999999999999999999999999 5699999999887653             2466666555432   1 2


Q ss_pred             CCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .++||+|+++.++++.+  ....+++.+.++|+|||.+++.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            45799999999987643  5678999999999999996543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.63  E-value=2.8e-15  Score=122.96  Aligned_cols=108  Identities=22%  Similarity=0.264  Sum_probs=89.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.|.+|+++|. +++++.+++++...+.            ..++++...+..+..  ...
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~------------~~~v~~~~~d~~~l~--~~~  109 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV------------SDNMQFIHCAAQDIA--QHL  109 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------------ccceEEEEcCHHHHh--hhc
Confidence            4579999999999999999999999999999 6799999999887653            246777776654332  123


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .++||+|++..++++......+++.+.++|+|||.+++.....
T Consensus       110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            5789999999999988888899999999999999998875443

>PLN02244 tocopherol O-methyltransferase

Probab=99.63  E-value=8.9e-15  Score=124.67  Aligned_cols=105  Identities=15%  Similarity=0.073  Sum_probs=88.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++++|||||||+|..+..+++. +++|+++|+ +.+++.++++++.++.            ..++++...|..+   .+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~------------~~~v~~~~~D~~~---~~  181 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL------------SDKVSFQVADALN---QP  181 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEEcCccc---CC
Confidence            46789999999999999999986 789999999 5699999998887763            2468888766543   33


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..+++||+|++..++++..+...+++.+.++|+|||.++++.
T Consensus       182 ~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        182 FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            456799999999999998889999999999999999999875

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=2.6e-15  Score=103.77  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=76.3

Q ss_pred             EEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCc
Q 027530           69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPF  146 (222)
Q Consensus        69 LelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  146 (222)
                      ||+|||+|..+..+++. +.+|+++|. +++++.++++....                .+.+...+.   ...+..+++|
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----------------~~~~~~~d~---~~l~~~~~sf   61 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----------------GVSFRQGDA---EDLPFPDNSF   61 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----------------TEEEEESBT---TSSSS-TT-E
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----------------CchheeehH---HhCccccccc
Confidence            89999999999999999 779999999 56899988877643                344666554   3445568899


Q ss_pred             cEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      |+|+++.++++.+....+++.+.++|||||.+++
T Consensus        62 D~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   62 DVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999988999999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=1e-14  Score=117.12  Aligned_cols=106  Identities=14%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +|.+|||+|||||-.++.+++..  ++|+++|+ +.|++.+++.+..-+.             ..++++.   ++.+.++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-------------~~i~fv~---~dAe~LP  114 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-------------QNVEFVV---GDAENLP  114 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-------------cceEEEE---echhhCC
Confidence            78999999999999999999876  58999999 5699999998875442             1377777   6667788


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +++++||+|.++-.+.+..+++..|+.+.|+|||||++++....+
T Consensus       115 f~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         115 FPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             CCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            889999999999999999999999999999999999887765443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.61  E-value=1.6e-14  Score=116.68  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||||.++..+++. +  .+|+++|+ ++|++.+++++...+.             .++++.+.|   .+.
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-------------~~i~~v~~d---a~~  109 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-------------QNIEFVQGD---AED  109 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------------SEEEEE-B---TTB
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-------------CCeeEEEcC---HHH
Confidence            36789999999999999999875 3  47999999 5699999999987653             378888844   455


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      ++..+++||+|+++-.+.+..+....++.+.++|||||++.+....+..
T Consensus       110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            6667899999999999988889999999999999999999887765544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.61  E-value=1.2e-14  Score=114.66  Aligned_cols=100  Identities=16%  Similarity=0.211  Sum_probs=78.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.++++++.+++              .+.+...|....   + .
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--------------~v~~~~~d~~~~---~-~   91 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--------------PLRTDAYDINAA---A-L   91 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--------------CceeEeccchhc---c-c
Confidence            4579999999999999999999999999999 5699999998876653              244444443221   1 2


Q ss_pred             CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .++||+|+++.++++.  .....+++.+.++|+|||.+++.
T Consensus        92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4579999999988764  45678999999999999986554

Part of a tellurite-reducing operon tehA and tehB

>PRK14968 putative methyltransferase; Provisional

Probab=99.61  E-value=4.1e-14  Score=110.37  Aligned_cols=142  Identities=21%  Similarity=0.268  Sum_probs=101.0

Q ss_pred             cchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      ++.+.+|++++..           .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|+..++..      
T Consensus         9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------   71 (188)
T PRK14968          9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------   71 (188)
T ss_pred             chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence            3446677777642           36789999999999999999988889999999 66999999999887642      


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc---------------------cCHHHHHHHHHHhcCCCe
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT  176 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g  176 (222)
                           ...+.+...|+.+..    ...+||+|+++++++..                     .....+++.+.++|+|+|
T Consensus        72 -----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG  142 (188)
T PRK14968         72 -----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG  142 (188)
T ss_pred             -----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe
Confidence                 112667776664421    23489999998876541                     124568899999999999


Q ss_pred             EEEEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530          177 TILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       177 ~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      .+++.......  .+.+.+.+ +.+|.+..+..
T Consensus       143 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        143 RILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             EEEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence            98877653322  23444444 34787665543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=4.1e-14  Score=110.56  Aligned_cols=122  Identities=18%  Similarity=0.203  Sum_probs=90.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.+++.  +++|+++|. +++++.+++|++.++..             ++++...+..+.   .
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-------------~i~~~~~d~~~~---~  108 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-------------NVTVVHGRAEEF---G  108 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-------------CEEEEeccHhhC---C
Confidence            3789999999999999998864  468999999 56999999999988742             488888665543   2


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  209 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~  209 (222)
                      . .++||+|+++.    ...++.+++.+.++|+|||.+++.......   ..+.+.. ..++.++.+-..
T Consensus       109 ~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~~~  170 (187)
T PRK00107        109 Q-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVIEL  170 (187)
T ss_pred             C-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeEEE
Confidence            2 56899999874    245788999999999999999887644322   3333333 247766544443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.60  E-value=4e-14  Score=120.39  Aligned_cols=132  Identities=14%  Similarity=0.099  Sum_probs=97.4

Q ss_pred             EEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhH
Q 027530           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVL   98 (222)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l   98 (222)
                      .+++...|+.+..+ .+-.++..|.+.+..          . ...+|||||||+|.+++.+++.+.  +|+++|. +.|+
T Consensus       166 ~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~----------~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al  233 (342)
T PRK09489        166 GLTVKTLPGVFSRD-GLDVGSQLLLSTLTP----------H-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL  233 (342)
T ss_pred             CEEEEeCCCCCCCC-CCCHHHHHHHHhccc----------c-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            46778888665443 445566777776632          2 234799999999999999998754  7999999 5699


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc-----cCHHHHHHHHHHhcC
Q 027530           99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSG  173 (222)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~ll~~~~~~l~  173 (222)
                      +.+++|++.|++.              .++...|...     ...++||+|+++++++..     .....+++.+.++|+
T Consensus       234 ~~A~~nl~~n~l~--------------~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk  294 (342)
T PRK09489        234 ESSRATLAANGLE--------------GEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN  294 (342)
T ss_pred             HHHHHHHHHcCCC--------------CEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence            9999999988742              2344333221     125689999999988652     345789999999999


Q ss_pred             CCeEEEEEEEE
Q 027530          174 PKTTILLGYEI  184 (222)
Q Consensus       174 ~~g~~~l~~~~  184 (222)
                      |||.++++...
T Consensus       295 pgG~L~iVan~  305 (342)
T PRK09489        295 SGGELRIVANA  305 (342)
T ss_pred             cCCEEEEEEeC
Confidence            99999988753

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.58  E-value=4.5e-14  Score=116.52  Aligned_cols=106  Identities=18%  Similarity=0.236  Sum_probs=82.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|.+|||||||.|-+++.+++. |++|+++.+ ++..+.+++.++..++.            +++++...||.+.  
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~------------~~v~v~~~D~~~~--  124 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE------------DRVEVRLQDYRDL--  124 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS------------STEEEEES-GGG---
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEEeecccc--
Confidence            5668899999999999999999987 999999999 55899999999877753            5788888777543  


Q ss_pred             ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                          +.+||.|++-+++.+.  ...+.+++.+.++|+|||++++....
T Consensus       125 ----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  125 ----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             ----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence                3499999999999886  57889999999999999999876544

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00452 methyltransferase, putative

Probab=99.58  E-value=3.6e-14  Score=119.04  Aligned_cols=106  Identities=18%  Similarity=0.164  Sum_probs=80.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|++|||+|||+|..++.++..|+ .|+++|.+ .++..++.......            ...++.+..++..+.  
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~------------~~~~v~~~~~~ie~l--  183 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD------------NDKRAILEPLGIEQL--  183 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc------------cCCCeEEEECCHHHC--
Confidence            456789999999999999999988887 59999984 47766533222111            113556666544332  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       +. ...||+|+++.++||..+...+++.+++.|+|||.+++..
T Consensus       184 -p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       184 -HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             -CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence             22 3489999999999999999999999999999999999864

Known examples to date are restricted to the proteobacteria.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=8.2e-14  Score=114.61  Aligned_cols=110  Identities=19%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+|||+|||+|..+..+++. +  .+|+++|. ++|++.++++......          ....++++...|..   .
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----------~~~~~i~~~~~d~~---~  138 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----------SCYKNIEWIEGDAT---D  138 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh----------ccCCCeEEEEcccc---c
Confidence            35789999999999999988875 4  48999999 5699999876542110          01246778775543   3


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ++..+++||+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus       139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            44456789999999999998899999999999999999998876544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.57  E-value=5.6e-14  Score=118.79  Aligned_cols=105  Identities=20%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..+|++|||||||+|..++.++..|+ .|+++|.+ .++..++......+            ...++.+...+..+.   
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~------------~~~~i~~~~~d~e~l---  184 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG------------NDQRAHLLPLGIEQL---  184 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC------------CCCCeEEEeCCHHHC---
Confidence            46789999999999999999999887 59999984 46654333222111            123677877665433   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +. .++||+|++..++||..+...+++.+++.|+|||.+++..
T Consensus       185 p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        185 PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            33 6789999999999999999999999999999999998864

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.57  E-value=1.8e-13  Score=107.12  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..++.+++.+  .+|+++|. +++++.+++|++.++.             .++++...+...    
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-------------~~i~~~~~d~~~----   92 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-------------GNIDIIPGEAPI----   92 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCeEEEecCchh----
Confidence            367899999999999999999875  47999999 6699999999988763             256766644321    


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCe
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  202 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~  202 (222)
                       ....+||+|+++...   ..+..+++.+.+.|+|||.+++.......  ..++.+.++ .+|.
T Consensus        93 -~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~  150 (187)
T PRK08287         93 -ELPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS  150 (187)
T ss_pred             -hcCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence             124579999987543   34678899999999999999886543222  244445553 4553

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=6.7e-14  Score=114.53  Aligned_cols=107  Identities=18%  Similarity=0.271  Sum_probs=92.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..-+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.++.-++.            .++++...||.+.. 
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~------------~~v~v~l~d~rd~~-  135 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE------------DNVEVRLQDYRDFE-  135 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC------------cccEEEeccccccc-
Confidence            5668999999999999999999987 899999999 55999999999887753            58999998998763 


Q ss_pred             ccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                           ++||-|+|-+.+.+...  .+.+++.+.++|+|||++++-...+
T Consensus       136 -----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         136 -----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             -----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence                 45999999999988554  9999999999999999998865543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.56  E-value=4.2e-14  Score=117.91  Aligned_cols=101  Identities=22%  Similarity=0.322  Sum_probs=81.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++              ++++...|.....    .
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--------------~v~~~~~D~~~~~----~  181 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--------------NIRTGLYDINSAS----I  181 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--------------ceEEEEechhccc----c
Confidence            4569999999999999999999999999999 5699999999887652              4566655543321    2


Q ss_pred             CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +++||+|+++.++++.  +....+++.+.++|+|||.+++..
T Consensus       182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5789999999988764  367789999999999999976643

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.56  E-value=2e-13  Score=111.58  Aligned_cols=145  Identities=13%  Similarity=0.123  Sum_probs=98.6

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      .+..|.+++....      .....+.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|+..|+        
T Consensus        69 ~Te~Lv~~~l~~~------~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------  134 (251)
T TIGR03704        69 RTEFLVDEAAALA------RPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------  134 (251)
T ss_pred             cHHHHHHHHHHhh------cccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence            3567777665432      11123458999999999999998875  458999999 679999999998764        


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHHh
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL  171 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~  171 (222)
                              +++...|+.+.... ...++||+|++++++....                          ....+++.+.++
T Consensus       135 --------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~  205 (251)
T TIGR03704       135 --------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW  205 (251)
T ss_pred             --------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh
Confidence                    25566666542211 1135799999998865211                          134677778889


Q ss_pred             cCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530          172 SGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  211 (222)
Q Consensus       172 l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~  211 (222)
                      |+|||.+++.+.....   ....+.+ +.+|....+.+.++
T Consensus       206 L~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       206 LAPGGHLLVETSERQA---PLAVEAFARAGLIARVASSEEL  243 (251)
T ss_pred             cCCCCEEEEEECcchH---HHHHHHHHHCCCCceeeEcccc
Confidence            9999999988764332   3445544 35777766665544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.56  E-value=6.8e-14  Score=115.20  Aligned_cols=105  Identities=16%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..+..+++. +++|+++|+ +++++.++++....               .++.+...|..+   .
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~i~~~~~D~~~---~  111 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---------------NKIEFEANDILK---K  111 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---------------CceEEEECCccc---C
Confidence            456789999999999999888764 679999999 56999998875421               357777755542   2


Q ss_pred             cccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +..+++||+|++.+++++..  ....+++.+.++|+|||.+++....
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            33467899999998887653  6788999999999999999988653

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.56  E-value=1.3e-14  Score=104.74  Aligned_cols=106  Identities=21%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      |.+|||+|||+|...+.+++.+ .+++++|+ +.+++.++.|+..++..            .++++...|+.+.. ....
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~------------~~~~~~~~D~~~~~-~~~~   67 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD------------DRVEVIVGDARDLP-EPLP   67 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT------------TTEEEEESHHHHHH-HTCT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC------------ceEEEEECchhhch-hhcc
Confidence            4689999999999999999999 78999999 67999999999988642            57888887775432 1234


Q ss_pred             CCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .++||+|++++++....        ....+++.+.++|+|+|.+++..+
T Consensus        68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            68999999999987431        246789999999999999988654

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.55  E-value=6.3e-14  Score=114.59  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..++..+.+|+++|+ +++++.++++..                  ...+...|+.+   .+..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------------------~~~~~~~d~~~---~~~~  100 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------------------ADHYLAGDIES---LPLA  100 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------------------CCCEEEcCccc---CcCC
Confidence            4678999999999999999988999999999 669998887643                  12344444432   3334


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++.++++..+...+++.+.++|+|||.++++...
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            678999999999988888999999999999999999988644

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.1e-13  Score=112.97  Aligned_cols=103  Identities=22%  Similarity=0.335  Sum_probs=81.0

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      +|||||||+|.+++.++..+.  +|+++|+ +++++.|++|+..|++             .++.+...||-+.     ..
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-------------~~~~~~~~dlf~~-----~~  174 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-------------VRVLVVQSDLFEP-----LR  174 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-------------ccEEEEeeecccc-----cC
Confidence            799999999999999999876  8999999 6799999999999984             2555565577643     24


Q ss_pred             CCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          144 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      ++||+||+|+++-..+                         ....++..+.++|+|+|.+++-......
T Consensus       175 ~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~  243 (280)
T COG2890         175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG  243 (280)
T ss_pred             CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence            5999999999874332                         2456777788889999988776654333

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.54  E-value=1.2e-13  Score=107.56  Aligned_cols=104  Identities=24%  Similarity=0.278  Sum_probs=79.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+..++||||||.|..++.||++|..|+++|.+ .+++.+++-++..++              .|+....|..+..   
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--------------~i~~~~~Dl~~~~---   90 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--------------DIRTRVADLNDFD---   90 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---------------TEEEEE-BGCCBS---
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--------------eeEEEEecchhcc---
Confidence            3466799999999999999999999999999994 599988887776653              4677776665443   


Q ss_pred             ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .++.||+|++.-++++  .+..+.+++.+++.++|||.+++...
T Consensus        91 -~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   91 -FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             --TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence             2468999998766654  45678899999999999999877543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=2.5e-13  Score=103.97  Aligned_cols=120  Identities=26%  Similarity=0.389  Sum_probs=84.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+.+|++|+|||||||.+++.++.+|+ +|+++|+ +++++.+++|+.+..              .++.+...|..+.  
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--------------g~v~f~~~dv~~~--  105 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--------------GDVEFVVADVSDF--  105 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--------------CceEEEEcchhhc--
Confidence            678999999999999999999999998 5999999 789999999999743              5788888666554  


Q ss_pred             ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH--hcCCeEEEec
Q 027530          139 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW--KSNFNVKLVP  207 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~--~~~~~v~~v~  207 (222)
                          ..++|.+|.|+++=..  +.=.+++....+..   -.+| +.++..   ...|.+..  ..|+.+....
T Consensus       106 ----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s---~vVY-siH~a~---~~~f~~~~~~~~G~~v~~~~  167 (198)
T COG2263         106 ----RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS---DVVY-SIHKAG---SRDFVEKFAADLGGTVTHIE  167 (198)
T ss_pred             ----CCccceEEECCCCccccccCCHHHHHHHHHhh---heEE-Eeeccc---cHHHHHHHHHhcCCeEEEEE
Confidence                5789999999987432  11223555555543   2333 333222   24555443  3466665443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.54  E-value=9.2e-13  Score=113.48  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      .+..+.+.+.+..         .++.+|||+|||+|.+++.+++.  +.+|+++|+ +++++.+++|++.++        
T Consensus       237 eTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--------  299 (423)
T PRK14966        237 ETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--------  299 (423)
T ss_pred             cHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence            4667777776542         24568999999999999998865  468999999 669999999998765        


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhc
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALS  172 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l  172 (222)
                            .++++.+.||.+... + ...+||+|++|+++....                         .+..+++.+.++|
T Consensus       300 ------~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L  371 (423)
T PRK14966        300 ------ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL  371 (423)
T ss_pred             ------CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence                  267888888754321 1 235799999999863211                         1346777778889


Q ss_pred             CCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530          173 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       173 ~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v  203 (222)
                      +|+|.+++........   ...+.++ .+|..
T Consensus       372 kpgG~lilEiG~~Q~e---~V~~ll~~~Gf~~  400 (423)
T PRK14966        372 AEGGFLLLEHGFDQGA---AVRGVLAENGFSG  400 (423)
T ss_pred             CCCcEEEEEECccHHH---HHHHHHHHCCCcE
Confidence            9999988766543333   3333332 46644

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.54  E-value=8.8e-14  Score=105.52  Aligned_cols=99  Identities=24%  Similarity=0.252  Sum_probs=79.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||+|||+|..+..+++.|.+|+++|. +.+++.      .+                 +.....+-   ....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-----------------~~~~~~~~---~~~~   73 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-----------------VVFDNFDA---QDPP   73 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-----------------SEEEEEEC---HTHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-----------------hhhhhhhh---hhhh
Confidence            457789999999999999999999999999998 557766      11                 11121111   1222


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      ..+++||+|+++.++++..+...+++.+.++|+|||.++++.+.+.
T Consensus        74 ~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   74 FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            3467999999999999999999999999999999999999998875

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.53  E-value=2e-13  Score=121.45  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=87.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|....              ..++++...|+.+.   +
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--------------~~~v~~~~~d~~~~---~  327 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--------------KCSVEFEVADCTKK---T  327 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--------------CCceEEEEcCcccC---C
Confidence            35779999999999999988865 779999999 56999998886522              24678888776543   2


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..+++||+|++.+++++......+++.+.++|+|||.+++....+
T Consensus       328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            235689999999999999999999999999999999999987543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.53  E-value=1.7e-13  Score=110.53  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=85.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++|||+|||+|..+..+++. +  .+|+++|+ +++++.+++|+..++.             .++++...|..+.  
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~--  108 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-------------HNVELVHGNAMEL--  108 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-------------CceEEEEechhcC--
Confidence            35789999999999999998875 3  48999999 6799999999876542             3677777665432  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       +..+++||+|+++.++.+.+....+++.+.++|+|||.+++...
T Consensus       109 -~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       109 -PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             -CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence             23457899999998888888888999999999999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.52  E-value=3.2e-13  Score=111.74  Aligned_cols=106  Identities=21%  Similarity=0.210  Sum_probs=85.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++. +.  +|+++|. +++++.+++|...++.             .++++...++.+  
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-------------~~v~~~~~d~~~--  139 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-------------TNVEFRLGEIEA--  139 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-------------CCEEEEEcchhh--
Confidence            347889999999999988877764 44  6999999 6699999999887653             367777766543  


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .+..++.||+|+++.++++......+++.+.++|+|||++++...
T Consensus       140 -l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        140 -LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             -CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence             333456899999998888888888999999999999999998653

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=2.2e-13  Score=111.81  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=78.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||||||+|..+..+++.  +.+|+++|. +++++.++++..                  ++.+...|..+.   
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------------------~~~~~~~d~~~~---   88 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------------------DCQFVEADIASW---   88 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------------------CCeEEECchhcc---
Confidence            45789999999999999998876  468999999 569999887642                  345555443322   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      . ...+||+|+++.++++..+...+++.+.+.|+|||.+++..
T Consensus        89 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         89 Q-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             C-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence            1 24589999999999888888999999999999999998864

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.52  E-value=1.5e-12  Score=112.68  Aligned_cols=147  Identities=20%  Similarity=0.223  Sum_probs=98.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-cc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (222)
                      +|++|||+|||+|..++.++..|+ +|+++|. +.+++.+++|++.|++.           ..++++...|+.+... ..
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~-----------~~~v~~i~~D~~~~l~~~~  288 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD-----------LSKAEFVRDDVFKLLRTYR  288 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----------CCcEEEEEccHHHHHHHHH
Confidence            578999999999999998887776 7999999 56999999999999852           1367888866643211 11


Q ss_pred             ccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-----hcCCeEEEe
Q 027530          141 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV  206 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-----~~~~~v~~v  206 (222)
                      ....+||+|+++++.+...         .+..++....++|+|||.++++.-...-. .+.|.+.+     ..+-++..+
T Consensus       289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l  367 (396)
T PRK15128        289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFI  367 (396)
T ss_pred             hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEE
Confidence            1245899999988876532         24556667788899999988754321111 23444433     234566655


Q ss_pred             cCCCCCcc----cCCCCCCC
Q 027530          207 PKAKESTM----WGNPLGLY  222 (222)
Q Consensus       207 ~~~~~~~~----~~~~~~~~  222 (222)
                      .....+++    ...++|.|
T Consensus       368 ~~~~~~~DhP~~~~~pe~~Y  387 (396)
T PRK15128        368 EQFRQAADHPVIATYPEGLY  387 (396)
T ss_pred             EEcCCCCCCCCCCCCCCcCC
Confidence            55444443    34556655

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.51  E-value=3.8e-13  Score=108.08  Aligned_cols=125  Identities=17%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++|||+|||+|..+..+++..  .+|+++|+ +++++.+++++...++            ..++++...|.....    .
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl------------~~~i~~~~~d~~~~~----~   64 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL------------QGRIRIFYRDSAKDP----F   64 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CcceEEEecccccCC----C
Confidence            479999999999999888764  58999999 5699999999887664            247788876664331    1


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC-------------hhHHHHHHHHH-hcCCeEEEe
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVKLV  206 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~-------------~~~~~~f~~~~-~~~~~v~~v  206 (222)
                      .++||+|++..++++......+++.+.++|+|||.+++......             .....++.+.+ +.+|.+...
T Consensus        65 ~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~  142 (224)
T smart00828       65 PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG  142 (224)
T ss_pred             CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence            35899999999999988899999999999999999998764321             01134555555 457877543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=6e-15  Score=103.52  Aligned_cols=95  Identities=15%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             EEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCC
Q 027530           69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAP  144 (222)
Q Consensus        69 LelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~  144 (222)
                      ||+|||+|..+..++..  ..+++++|+ +.|++.+++++.....             .......  +...+.... ..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-------------~~~~~~~--~~~~~~~~~~~~~   65 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-------------DNFERLR--FDVLDLFDYDPPE   65 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----------------EEEEE----SSS---CCC--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-------------cceeEEE--eecCChhhccccc
Confidence            79999999999988887  668999999 5599888887776542             1222222  222221111 125


Q ss_pred             CccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530          145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  178 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  178 (222)
                      +||+|+++.++++.+....+++.+.++|+|||.+
T Consensus        66 ~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   66 SFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             ccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.51  E-value=1e-12  Score=109.32  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..+++.            .++++...|+.+..   
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~------------~~i~~~~~D~~~~~---  185 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIQSDLFAAL---  185 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhcc---
Confidence            3468999999999999999987  458999999 56999999999988742            46888887764321   


Q ss_pred             ccCCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ...+||+|++++++....                         ....+++.+.++|+|||.+++...
T Consensus       186 -~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       186 -PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             -CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence             245799999998753311                         124578888889999999887654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.50  E-value=3.1e-13  Score=106.56  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++.             .++++...|+.+..  .
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-------------~~v~~~~~D~~~~l--~  116 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-------------GNARVVNTNALSFL--A  116 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEEEchHHHHH--h
Confidence            356799999999999999655444 58999998 6799999999998874             26788887664321  1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHh--cCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~l~~~~r  185 (222)
                      ....+||+|+++++ |.......+++.+...  ++|++.+|+.+..+
T Consensus       117 ~~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        117 QPGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             hcCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            12356999999888 5667777888888774  79999999987654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.50  E-value=9.5e-13  Score=107.33  Aligned_cols=139  Identities=18%  Similarity=0.214  Sum_probs=97.4

Q ss_pred             ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccc
Q 027530           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQ  114 (222)
Q Consensus        38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~  114 (222)
                      .++.+..+.+++.+..        ...+.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|+..++.    
T Consensus        69 p~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----  136 (251)
T TIGR03534        69 PRPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----  136 (251)
T ss_pred             CCCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence            3455666777666542        124468999999999999999987  458999998 6699999999988763    


Q ss_pred             cCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------------------HHHHHHHH
Q 027530          115 MNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTI  168 (222)
Q Consensus       115 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~  168 (222)
                               .++.+...|+.+..    ..++||+|++++++.....                          ...+++.+
T Consensus       137 ---------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~  203 (251)
T TIGR03534       137 ---------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQA  203 (251)
T ss_pred             ---------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHH
Confidence                     25788887765421    2578999999988653211                          23577888


Q ss_pred             HHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          169 FALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       169 ~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      .++|+|||.+++...........++++  +.+|..
T Consensus       204 ~~~L~~gG~~~~~~~~~~~~~~~~~l~--~~gf~~  236 (251)
T TIGR03534       204 PRLLKPGGWLLLEIGYDQGEAVRALFE--AAGFAD  236 (251)
T ss_pred             HHhcccCCEEEEEECccHHHHHHHHHH--hCCCCc
Confidence            889999999998765433322233332  346643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.50  E-value=2.8e-13  Score=125.33  Aligned_cols=138  Identities=20%  Similarity=0.149  Sum_probs=104.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|++|||||||+|..++.+++.|+ +|+++|. +.+++.+++|++.|++.           ..++++...|..+..  ..
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~-----------~~~v~~i~~D~~~~l--~~  604 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS-----------GRQHRLIQADCLAWL--KE  604 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----------ccceEEEEccHHHHH--HH
Confidence            578999999999999999999887 5999999 56999999999999852           146888887654321  11


Q ss_pred             cCCCccEEEEeccccCcc-----------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530          142 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  209 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~  209 (222)
                      ..++||+||++++.+...           .+..++..+.++|+|||.++++...+.....   .+.+ +.++.+..+...
T Consensus       605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~  681 (702)
T PRK11783        605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAK  681 (702)
T ss_pred             cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecC
Confidence            256899999998875421           2456888888999999999887665544322   2333 458999999988


Q ss_pred             CCCcccCC
Q 027530          210 KESTMWGN  217 (222)
Q Consensus       210 ~~~~~~~~  217 (222)
                      ..+++|-.
T Consensus       682 ~~~~Dhp~  689 (702)
T PRK11783        682 TLPPDFAR  689 (702)
T ss_pred             CCCCCCCC
Confidence            88887743

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=4.2e-13  Score=110.01  Aligned_cols=96  Identities=20%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||||||+|.++..+++.  +.+|+++|. +.|++.++++                    ++++...|..+.   
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~~d~~~~---   84 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------------------GVDARTGDVRDW---   84 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------------------CCcEEEcChhhC---
Confidence            46689999999999999999987  668999999 5699888652                    234555443322   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      . ..++||+|+++.++++......+++.+.++|+|||.+++..
T Consensus        85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence            1 24689999999999998889999999999999999998864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.49  E-value=4.5e-13  Score=107.19  Aligned_cols=100  Identities=15%  Similarity=0.145  Sum_probs=76.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..+..+++...   +|+++|. +++++.+++|++.++.             .++++...|..+. 
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-------------~~v~~~~~d~~~~-  140 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-------------DNVIVIVGDGTQG-  140 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-------------CCeEEEECCcccC-
Confidence            45778999999999999999998754   4999998 6799999999998763             3678887665432 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        .....+||+|++....      ..+.+.+.+.|+|||++++...
T Consensus       141 --~~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       141 --WEPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             --CcccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence              1124689999987554      2344567888999999887643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.49  E-value=1.4e-12  Score=114.93  Aligned_cols=145  Identities=12%  Similarity=0.104  Sum_probs=102.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +..|.+.+.+.+       ...++.+|||+|||+|..++.+++.+.+|+++|. ++|++.+++|++.|+.          
T Consensus       282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~----------  344 (443)
T PRK13168        282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL----------  344 (443)
T ss_pred             HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence            455666665542       2346689999999999999999999889999999 5699999999998874          


Q ss_pred             CCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530          121 NLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  199 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~  199 (222)
                         .++++...|+.+... ....+.+||+|+++++.-  . ....++.+.+ ++|++.+|+++.+....  .......+.
T Consensus       345 ---~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~--g-~~~~~~~l~~-~~~~~ivyvSCnp~tla--RDl~~L~~~  415 (443)
T PRK13168        345 ---DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRA--G-AAEVMQALAK-LGPKRIVYVSCNPATLA--RDAGVLVEA  415 (443)
T ss_pred             ---CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCc--C-hHHHHHHHHh-cCCCeEEEEEeChHHhh--ccHHHHhhC
Confidence               368889888764321 112245799999887752  2 3456666666 58999999998664432  233333366


Q ss_pred             CCeEEEecCCCCC
Q 027530          200 NFNVKLVPKAKES  212 (222)
Q Consensus       200 ~~~v~~v~~~~~~  212 (222)
                      +|+++.+.--++-
T Consensus       416 gY~l~~i~~~DmF  428 (443)
T PRK13168        416 GYRLKRAGMLDMF  428 (443)
T ss_pred             CcEEEEEEEeccC
Confidence            8888766544433

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=5e-13  Score=109.72  Aligned_cols=107  Identities=22%  Similarity=0.257  Sum_probs=76.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+++|++|||||||.|..+..++..|++ |+|+|... +-.++-.+-+.-+.          ....+....+..   +.+
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg----------~~~~~~~lplgv---E~L  177 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG----------QDPPVFELPLGV---EDL  177 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhC----------CCccEEEcCcch---hhc
Confidence            4689999999999999999999999995 99999632 12222222111110          011222222222   233


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +. .+.||+|++..++||..+.-..++.++..|+|||.+++-.
T Consensus       178 p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  178 PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            33 5789999999999999999999999999999999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.49  E-value=8.9e-13  Score=109.78  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=82.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+|||+|||+|.+++.++...  .+|+++|+ +++++.+++|+..++..            .++++...||.+..    .
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~------------~~v~~~~~d~~~~~----~  179 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE------------HRVEFIQSNLFEPL----A  179 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhccC----c
Confidence            689999999999999999874  58999999 66999999999988742            35888888876432    1


Q ss_pred             CCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          143 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      ..+||+|++++++....                         ....+++.+.++|+|||.+++.......
T Consensus       180 ~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~  249 (284)
T TIGR00536       180 GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ  249 (284)
T ss_pred             CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence            34799999997764321                         2445778888899999998887654433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.48  E-value=2.1e-12  Score=93.76  Aligned_cols=102  Identities=25%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..++.+++..  .+|+++|. +.+++.+++|++.++.             .++++...+....  .
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~--~   82 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-------------SNIVIVEGDAPEA--L   82 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-------------CceEEEecccccc--C
Confidence            356799999999999999999863  57999999 5699999999987753             2566665443321  1


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ....++||+|++....   .....+++.+.+.|+|||.+++..
T Consensus        83 ~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        83 EDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            1224689999986543   345689999999999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.48  E-value=7.5e-13  Score=107.00  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCC
Q 027530           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNL  122 (222)
Q Consensus        44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (222)
                      ...+|+...       ....++++|||||||+|..+..+++.+++|+++|. +++++.+++++..++.            
T Consensus        35 ~~~~~l~~~-------~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------   95 (233)
T PRK05134         35 LRLNYIREH-------AGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------   95 (233)
T ss_pred             HHHHHHHHh-------ccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence            444566554       23457889999999999999999999999999999 5689999988876542            


Q ss_pred             CCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          123 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       123 ~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                        .+.+...++.+...  ...++||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus        96 --~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~  153 (233)
T PRK05134         96 --KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN  153 (233)
T ss_pred             --ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence              45566555543321  13468999999999988888899999999999999999987654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.48  E-value=6.3e-13  Score=104.20  Aligned_cols=111  Identities=19%  Similarity=0.197  Sum_probs=80.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..+|++||||+||+|.+|+.++.+|+ +|+++|. +++++.+++|++.|+..            .++++...|..+....
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~------------~~~~~~~~D~~~~l~~  114 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG------------EQAEVVRNSALRALKF  114 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc------------ccEEEEehhHHHHHHH
Confidence            45788999999999999999999998 6999999 56999999999998742            3577777665332111


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~  184 (222)
                      .....+++.||..|+.|.......++..+..  +++++|.+++-+..
T Consensus       115 ~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       115 LAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             hhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            1112334444456666776777777777755  58888877765544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.47  E-value=3.6e-13  Score=106.75  Aligned_cols=125  Identities=14%  Similarity=-0.033  Sum_probs=89.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec-CCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW-GNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~  139 (222)
                      .+.+|||+|||+|..++.+++..  .+|+++|. +++++.+++|+..++.             .++.+...|+ .... .
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-------------~~v~~~~~d~~~~l~-~  105 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-------------TNLRLLCGDAVEVLL-D  105 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-------------CCEEEEecCHHHHHH-H
Confidence            56789999999999999988763  47999999 6699999999987763             3688888666 3211 1


Q ss_pred             cccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~  204 (222)
                      ...+.+||.|+++.+..+..        ....+++.+.++|+|||.++++...+.  .....++.++ .++.++
T Consensus       106 ~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        106 MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence            12356899999874432211        247799999999999999999875433  2345555553 465544

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=8.2e-13  Score=107.85  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++.+|||||||+|..++.+++.    +.+|+++|. ++|++.+++++..++.            ..++++...+..+.  
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~------------~~~v~~~~~d~~~~--  121 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------------PTPVDVIEGDIRDI--  121 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEeCChhhC--
Confidence            5679999999999999888762    468999999 6699999999987653            24678887665432  


Q ss_pred             ccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       +  .+.+|+|+++-++++.+  ....+++.+.+.|+|||.++++...+
T Consensus       122 -~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~  167 (247)
T PRK15451        122 -A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  167 (247)
T ss_pred             -C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence             2  24599999988876643  34679999999999999999987543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.46  E-value=1.6e-12  Score=110.10  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=80.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||||||+|..++.+++.  +.+|+++|. +++++.++++...                .++++...|..+   .+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----------------~~i~~i~gD~e~---lp  173 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----------------KECKIIEGDAED---LP  173 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----------------cCCeEEeccHHh---CC
Confidence            5679999999999999888765  358999999 5699999887542                245666655432   33


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..++.||+|+++.++++......+++.+.++|+|||.+++...
T Consensus       174 ~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3467899999999998888888999999999999999987654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.46  E-value=3.5e-12  Score=100.73  Aligned_cols=124  Identities=19%  Similarity=0.260  Sum_probs=88.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...++.+|||+|||+|..++.+++. +  .+|+++|. +++++.+++|++.+++.            .++.+...|..+.
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~------------~~v~~~~~d~~~~  104 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL------------NNIVLIKGEAPEI  104 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CCeEEEEechhhh
Confidence            3557789999999999999998865 3  47999999 67999999999987632            4677776555432


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v  203 (222)
                        .+...++||.|+++.   .......+++.+.++|+|||++++...  ......+..+.++ .+|.+
T Consensus       105 --l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        105 --LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL  165 (198)
T ss_pred             --HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence              122246899999853   234567899999999999999876332  2223345555553 46644

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.46  E-value=3.7e-12  Score=113.71  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=80.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|.+++.++..  +++|+++|+ +++++.+++|+..+++.            .++.+...||.+..   
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~------------~~v~~~~~D~~~~~---  202 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT------------DRIQIIHSNWFENI---  202 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc------------cceeeeecchhhhC---
Confidence            3468999999999999988865  468999999 56999999999887642            46788887764321   


Q ss_pred             ccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       ...+||+|++++++....                          .+..+++.+.++|+|||.+++.....
T Consensus       203 -~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~  272 (506)
T PRK01544        203 -EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK  272 (506)
T ss_pred             -cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence             245899999998764311                          13446677788999999998865443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=4.6e-12  Score=104.83  Aligned_cols=136  Identities=18%  Similarity=0.249  Sum_probs=94.9

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      +.+..+.+++...       ....++.+|||+|||+|..++.++...  .+|+++|. +++++.+++|+. +..      
T Consensus        91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------  156 (275)
T PRK09328         91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------  156 (275)
T ss_pred             CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence            3456777776643       233456799999999999999999875  57999999 569999999988 221      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--------------------------CHHHHHHHHHH
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFA  170 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------~~~~ll~~~~~  170 (222)
                            ..++.+...|+.+..    ...+||+|++++++....                          .+..+++.+.+
T Consensus       157 ------~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~  226 (275)
T PRK09328        157 ------GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR  226 (275)
T ss_pred             ------CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH
Confidence                  247888887774321    146899999988764321                          13457777789


Q ss_pred             hcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCe
Q 027530          171 LSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN  202 (222)
Q Consensus       171 ~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~  202 (222)
                      +|+|||.+++.......   ..+.+.+ +.+|.
T Consensus       227 ~Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~  256 (275)
T PRK09328        227 YLKPGGWLLLEIGYDQG---EAVRALLAAAGFA  256 (275)
T ss_pred             hcccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence            99999999886544332   2333333 34664

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=2.9e-12  Score=101.80  Aligned_cols=101  Identities=20%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|. +++++.+++|+..++..            .++++...|..+. 
T Consensus        70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~------------~~v~~~~~d~~~~-  136 (205)
T PRK13944         70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW------------GVVEVYHGDGKRG-  136 (205)
T ss_pred             CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CcEEEEECCcccC-
Confidence            346789999999999999888875   358999999 67999999999877632            3577777555432 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        .....+||+|+++..+.      .+.+.+.+.|+|||++++...
T Consensus       137 --~~~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        137 --LEKHAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             --CccCCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEEEc
Confidence              12246899999887653      233567788999999887653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=2.4e-12  Score=108.10  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+|||+|||+|.+++.++..  +.+|+++|+ +++++.+++|++.+++.            .++++...|+.+.  .  .
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~------------~~i~~~~~D~~~~--l--~  198 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE------------DRVTLIESDLFAA--L--P  198 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------CcEEEEECchhhh--C--C
Confidence            68999999999999999987  458999999 66999999999988742            4688888776432  1  2


Q ss_pred             CCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+||+|++++++....                         ....+++.+.++|+|||.+++....
T Consensus       199 ~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        199 GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            35799999998753211                         1356788888899999999886543

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.44  E-value=4.4e-13  Score=111.53  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=86.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+++++|||+|||+|.+++.+|+.|+ +|+++|.+++.+.+++.+..|++.            ..|++.+....+. +
T Consensus        56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~------------~ii~vi~gkvEdi-~  122 (346)
T KOG1499|consen   56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLE------------DVITVIKGKVEDI-E  122 (346)
T ss_pred             hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCcc------------ceEEEeecceEEE-e
Confidence            4679999999999999999999999999 599999999889999999999864            4688888666554 2


Q ss_pred             ccccCCCccEEEEecc---ccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          139 IKAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      +  +.++.|+|++--.   +++.+.+..++-+-.+.|+|||.+|
T Consensus       123 L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  123 L--PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             c--CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            2  2689999997544   3446778888888888999999765

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.44  E-value=3.1e-12  Score=109.75  Aligned_cols=178  Identities=18%  Similarity=0.095  Sum_probs=122.2

Q ss_pred             EEEeEcCeEEEEeeCCC-CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEE
Q 027530           14 INLEVLGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVIT   91 (222)
Q Consensus        14 ~~~~~~~~~~~i~q~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~   91 (222)
                      -.+.+.++...+.-+.. +-.||..+|-  ...-+++..          ..+|++||++.|-||..|+.+|..|| +||.
T Consensus       178 ~~~~i~E~g~kf~v~~~~g~kTGfFlDq--R~~R~~l~~----------~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~  245 (393)
T COG1092         178 EEVVIEENGVKFLVDLVDGLKTGFFLDQ--RDNRRALGE----------LAAGKRVLNLFSYTGGFSVHAALGGASEVTS  245 (393)
T ss_pred             CcEEEEeCCeEEEEecCCcccceeeHHh--HHHHHHHhh----------hccCCeEEEecccCcHHHHHHHhcCCCceEE
Confidence            34445555555555553 4456655443  233334432          33589999999999999999999999 7999


Q ss_pred             ecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCc---------cC
Q 027530           92 TDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE---------HL  160 (222)
Q Consensus        92 ~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~---------~~  160 (222)
                      +|.+. +++.+++|++.|++.           ..++.+++.|.-+... ......+||+||.-+|-|..         .+
T Consensus       246 VD~S~~al~~a~~N~~LNg~~-----------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rd  314 (393)
T COG1092         246 VDLSKRALEWARENAELNGLD-----------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRD  314 (393)
T ss_pred             EeccHHHHHHHHHHHHhcCCC-----------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHH
Confidence            99955 999999999999964           3456676644332211 11224599999999988763         24


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-----hcCCeEEEecCCCCCccc
Q 027530          161 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKAKESTMW  215 (222)
Q Consensus       161 ~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-----~~~~~v~~v~~~~~~~~~  215 (222)
                      +..++..+.++|+|||.++++.-.+.-. ...|.+.+     ..+..+..+.....++++
T Consensus       315 y~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~  373 (393)
T COG1092         315 YKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEIEGEGQPPDH  373 (393)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence            6678888899999999998887655443 23444433     235677777777777776

>TIGR00740 methyltransferase, putative

Probab=99.44  E-value=1.6e-12  Score=105.63  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++.+|||+|||+|..+..+++.    +.+|+++|. ++|++.+++++...+.            ..++++...|+.+.. 
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~------------~~~v~~~~~d~~~~~-  119 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------------EIPVEILCNDIRHVE-  119 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC------------CCCeEEEECChhhCC-
Confidence            6679999999999999988874    468999999 6699999999875431            236788886665432 


Q ss_pred             ccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                          .+.+|+|+++.++++.+  ....+++.+.+.|+|||.++++...+.
T Consensus       120 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~  165 (239)
T TIGR00740       120 ----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  165 (239)
T ss_pred             ----CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence                23589999988877643  356799999999999999999876543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.43  E-value=3e-12  Score=102.21  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=81.9

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      ++..+..++.+..       ...++.+|||+|||+|..+..+++..   .+|+++|. +++++.+++|++.++.      
T Consensus        60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------  126 (212)
T PRK13942         60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------  126 (212)
T ss_pred             CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            4556666555542       34577899999999999999888763   58999998 6799999999987763      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                             .++++...|...   ......+||+|++....      ..+...+.+.|+|||++++..
T Consensus       127 -------~~v~~~~gd~~~---~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        127 -------DNVEVIVGDGTL---GYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             -------CCeEEEECCccc---CCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence                   367777755332   22235689999876543      233456777899999988754

>PRK04266 fibrillarin; Provisional

Probab=99.43  E-value=2.8e-11  Score=97.34  Aligned_cols=129  Identities=17%  Similarity=0.128  Sum_probs=83.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.+|||+|||+|..++.+++..  .+|+++|. ++|++.+.++++..               .++.+...|..+...
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---------------~nv~~i~~D~~~~~~  134 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---------------KNIIPILADARKPER  134 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---------------CCcEEEECCCCCcch
Confidence            4477899999999999999999873  47999998 66999887776532               255666655432211


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC-----h--hHHHHHHHHH-hcCCeEEEec
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-----T--SVHEQMLQMW-KSNFNVKLVP  207 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~-----~--~~~~~f~~~~-~~~~~v~~v~  207 (222)
                      ......+||+|++.-.  .......+++.+.++|||||.++++.+.|.     .  ...+...+.+ +.+|++....
T Consensus       135 ~~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~  209 (226)
T PRK04266        135 YAHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV  209 (226)
T ss_pred             hhhccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            1112356999995421  112224468999999999999999533322     1  1122233444 3588775443

>PRK08317 hypothetical protein; Provisional

Probab=99.43  E-value=5.1e-12  Score=101.86  Aligned_cols=105  Identities=19%  Similarity=0.131  Sum_probs=83.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...++.+|||+|||+|..+..++...   .+|+++|. +++++.++++....              ..++.+...|..+.
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--------------~~~~~~~~~d~~~~   81 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--------------GPNVEFVRGDADGL   81 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--------------CCceEEEecccccC
Confidence            34567899999999999999888763   47999999 56889888873321              23667777555432


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         +...++||+|++..++.+......+++.+.++|+|||.+++..
T Consensus        82 ---~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         82 ---PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             ---CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence               2335789999999999888889999999999999999998765

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.42  E-value=2.5e-12  Score=103.78  Aligned_cols=101  Identities=16%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..+++|||+|||+|..+..+++.+.  +|+++|. +++++.++++..                 .++.+...|..+.   
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----------------~~~~~~~~d~~~~---   92 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----------------ENVQFICGDAEKL---   92 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----------------CCCeEEecchhhC---
Confidence            3457899999999999999998865  5899999 558877776543                 1456666555432   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      +..+++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus        93 ~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        93 PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            23457899999999999988899999999999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.42  E-value=7.1e-12  Score=99.98  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC-
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-  118 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-  118 (222)
                      ....|.+++...        ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+..   .+++........ 
T Consensus        19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~   87 (213)
T TIGR03840        19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE   87 (213)
T ss_pred             CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence            456787877542        1125679999999999999999999999999999 558886532   222211000000 


Q ss_pred             -CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEEcC------h--
Q 027530          119 -SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRS------T--  187 (222)
Q Consensus       119 -~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~r~------~--  187 (222)
                       +.....++++...|..+...  ...++||.|+-..++.+  .+....+++.+.++|+|||.+++......      +  
T Consensus        88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~  165 (213)
T TIGR03840        88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF  165 (213)
T ss_pred             ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence             00013467777766654321  11357999998766644  34456689999999999997555433211      1  


Q ss_pred             -hHHHHHHHHHhcCCeEEEecCCCCC
Q 027530          188 -SVHEQMLQMWKSNFNVKLVPKAKES  212 (222)
Q Consensus       188 -~~~~~f~~~~~~~~~v~~v~~~~~~  212 (222)
                       -...++.+.+...|.++.+......
T Consensus       166 ~~~~~eL~~~f~~~~~i~~~~~~~~~  191 (213)
T TIGR03840       166 SVSPAEVEALYGGHYEIELLESRDVL  191 (213)
T ss_pred             CCCHHHHHHHhcCCceEEEEeecccc
Confidence             1234455555557788777776655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.42  E-value=5.4e-13  Score=93.97  Aligned_cols=92  Identities=25%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             EEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        68 vLelGcG~G~~~i~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      |||||||+|.....+++..     .+++++|+ ++|++.++++....+              .++++.+.|+.+   .+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--------------~~~~~~~~D~~~---l~~   63 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--------------PKVRFVQADARD---LPF   63 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--------------TTSEEEESCTTC---HHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--------------CceEEEECCHhH---Ccc
Confidence            7999999999999999874     68999999 669999999887643              267888877654   344


Q ss_pred             cCCCccEEEEecc-ccC--ccCHHHHHHHHHHhcCCCe
Q 027530          142 VAPPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT  176 (222)
Q Consensus       142 ~~~~fD~Ii~~d~-~y~--~~~~~~ll~~~~~~l~~~g  176 (222)
                      ..++||+|+++.. +.+  .+....+++.+.++++|||
T Consensus        64 ~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   64 SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            5779999999644 443  3457889999999999987

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.42  E-value=8.3e-13  Score=102.19  Aligned_cols=99  Identities=20%  Similarity=0.255  Sum_probs=76.8

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      .++||+|||.|.++..||..+.+++++|+ +.+++.+++.+..               ..+|++.+.+.-+.    .+.+
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~---------------~~~V~~~~~dvp~~----~P~~  105 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG---------------LPHVEWIQADVPEF----WPEG  105 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----------------SSEEEEES-TTT-------SS
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC---------------CCCeEEEECcCCCC----CCCC
Confidence            57999999999999999999889999999 5699999987762               24788888776443    2468


Q ss_pred             CccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          145 PFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      +||+|+.+.++|+...   +..+++.+...|+|||.+++++.
T Consensus       106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999999999999765   44577888888999999999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.41  E-value=9.4e-12  Score=107.41  Aligned_cols=127  Identities=11%  Similarity=0.079  Sum_probs=93.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+.+|||||||+|.+++.++..+.+|+++|. +++++.+++|++.|+.             .++++...|..+...  ..
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-------------~~~~~~~~d~~~~~~--~~  297 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-------------DNLSFAALDSAKFAT--AQ  297 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEECCHHHHHH--hc
Confidence            5679999999999999999998889999999 6799999999998874             368888866643221  11


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCCC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKES  212 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~~  212 (222)
                      ..+||+|+.+++.  ......+++.+.+ ++|++.+|+++.+....  +... .+ .+|+++.+.--++-
T Consensus       298 ~~~~D~vi~DPPr--~G~~~~~l~~l~~-~~p~~ivyvsc~p~Tla--RDl~-~L-~gy~l~~~~~~DmF  360 (374)
T TIGR02085       298 MSAPELVLVNPPR--RGIGKELCDYLSQ-MAPKFILYSSCNAQTMA--KDIA-EL-SGYQIERVQLFDMF  360 (374)
T ss_pred             CCCCCEEEECCCC--CCCcHHHHHHHHh-cCCCeEEEEEeCHHHHH--HHHH-Hh-cCceEEEEEEeccC
Confidence            2469999998884  3556677777764 68999999998654332  2222 22 57888766544433

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.41  E-value=2.9e-12  Score=100.89  Aligned_cols=121  Identities=12%  Similarity=0.000  Sum_probs=86.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.++||||||+|..++.+++..  .+|+++|. .++++.+++++..+++             .++++...|..+.....
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-------------~ni~~i~~d~~~~~~~~   82 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-------------KNLHVLCGDANELLDKF   82 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-------------CCEEEEccCHHHHHHhh
Confidence            44689999999999999999874  47999999 5699999999987763             37888886664322111


Q ss_pred             ccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530          141 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  199 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~  199 (222)
                      ..++.+|.|+.+-+.-+..        ....+++.+.++|+|||.+++......  ....+.+.+..
T Consensus        83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~  147 (194)
T TIGR00091        83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSE  147 (194)
T ss_pred             CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence            2345899998874332211        125799999999999999998775433  23444555543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.41  E-value=3.9e-12  Score=102.09  Aligned_cols=125  Identities=20%  Similarity=0.226  Sum_probs=93.5

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      ......+|+.......   .....+.+|||+|||+|..+..+++.+++|+++|. +++++.+++++..++.         
T Consensus        25 ~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---------   92 (224)
T TIGR01983        25 MNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL---------   92 (224)
T ss_pred             hhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC---------
Confidence            3444556666553211   12345789999999999999999988889999999 5699999998886652         


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                          .++++...+..+...  ...++||+|+++.++++......+++.+.+.|+|+|.++++..
T Consensus        93 ----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983        93 ----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             ----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence                145666544433211  1146899999999999988999999999999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05785 hypothetical protein; Provisional

Probab=99.41  E-value=2.1e-12  Score=104.02  Aligned_cols=87  Identities=16%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +.+|||||||||..+..+++. +.+|+++|. ++|++.++++.                     ...+.+   ...++..
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------------------~~~~~d---~~~lp~~  107 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------------------DKVVGS---FEALPFR  107 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------------------ceEEec---hhhCCCC
Confidence            579999999999999999988 679999999 66999887531                     112322   2334556


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK  175 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~  175 (222)
                      +++||+|+++..+++..+.+.+++.+.++|+|.
T Consensus       108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            789999999999998899999999999999994

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.41  E-value=8.7e-12  Score=100.67  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=85.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++.+|||+|||+|..+..++..+   .+|+++|. +++++.+++++..++.            ..++.+...|+.+..  
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------~~~~~~~~~d~~~~~--  116 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL------------SGNVEFVQGDAEALP--  116 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc------------ccCeEEEecccccCC--
Confidence            56899999999999999998876   67999999 5699999998875432            246777776665432  


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ...++||+|+++.++++......+++.+.++|+|||.+++...
T Consensus       117 -~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        117 -FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             -CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence             2356899999998888888899999999999999999988654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.40  E-value=1.1e-11  Score=104.63  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.|++             .++++...|..+..  ...
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-------------~~v~~~~~D~~~~~--~~~  237 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-------------TNVQFQALDSTQFA--TAQ  237 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CceEEEEcCHHHHH--Hhc
Confidence            5679999999999999999999999999999 6699999999998874             36888886664332  112


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE  211 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~  211 (222)
                      .++||+|+.+++-  ......+++.+.+ ++|++.+|+++.+....  +.+ +.+ .+|+++.+.--++
T Consensus       238 ~~~~D~Vv~dPPr--~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~~Dm  299 (315)
T PRK03522        238 GEVPDLVLVNPPR--RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQLFDM  299 (315)
T ss_pred             CCCCeEEEECCCC--CCccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEEecc
Confidence            3579999998883  3444556666555 57889999988765442  222 222 5788766654333

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.40  E-value=4.9e-12  Score=109.32  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..++.+++. |++|+++|+ +++++.+++++.  +              ..+++...|+.+.   
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~--------------l~v~~~~~D~~~l---  225 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G--------------LPVEIRLQDYRDL---  225 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c--------------CeEEEEECchhhc---
Confidence            346789999999999999988875 789999999 569999998874  2              1355666554322   


Q ss_pred             cccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         +++||.|++..++++.  .....+++.+.++|+|||.+++..
T Consensus       226 ---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        226 ---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             ---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence               4689999999988775  345789999999999999998865

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=9.5e-12  Score=104.68  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..++.+++..  .+++++|.+++++.+++|+...++.            +++++...|..+..   
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~------------~rv~~~~~d~~~~~---  212 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA------------DRMRGIAVDIYKES---  212 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCcc------------ceEEEEecCccCCC---
Confidence            355799999999999999999885  4799999988999999999887643            57888886654321   


Q ss_pred             ccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        .+.+|+|+.+.++|+...  ...+++.+.+.|+|||++++...
T Consensus       213 --~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       213 --YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             --CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence              134799998888876543  45799999999999999999865

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.39  E-value=1.4e-11  Score=108.37  Aligned_cols=129  Identities=13%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  141 (222)
                      .+.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..|++             .++++...|+.+... ...
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-------------~nv~~~~~d~~~~l~~~~~  358 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-------------ANVEFLAGTLETVLPKQPW  358 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-------------CceEEEeCCHHHHHHHHHh
Confidence            4579999999999999999998889999999 6699999999998874             378888877643211 111


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  211 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~  211 (222)
                      ...+||+|+..++-  ......+++.+.+ ++|++.+|+++.+..   +..=++.+ +.+|.++.+.--++
T Consensus       359 ~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc~p~t---lard~~~l~~~gy~~~~~~~~Dm  423 (431)
T TIGR00479       359 AGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSCNPAT---LARDLEFLCKEGYGITWVQPVDM  423 (431)
T ss_pred             cCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcCCHHH---HHHHHHHHHHCCeeEEEEEEecc
Confidence            24579999987774  3445677777665 789999999876432   22223333 55788766554433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.39  E-value=9e-12  Score=105.84  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=89.9

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      ..+|..+...       ....+|.+|||+|||+|...+.++..+++|+++|+ ++|++.++.|++.++..          
T Consensus       168 ~~la~~~~~l-------~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~----------  230 (329)
T TIGR01177       168 PKLARAMVNL-------ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE----------  230 (329)
T ss_pred             HHHHHHHHHH-------hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC----------
Confidence            3556555443       23346789999999999999999989999999999 56999999999987743          


Q ss_pred             CCCceEEEEeecCCCccccccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                         ++.+...|..+   .+...++||+|++++++-..         .....+++.+.++|+|||.+++..+.+
T Consensus       231 ---~i~~~~~D~~~---l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       231 ---DFFVKRGDATK---LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             ---CCeEEecchhc---CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence               35666655443   33335789999998775321         225778999999999999998877654

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.39  E-value=1.4e-11  Score=98.23  Aligned_cols=114  Identities=17%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      ++..+..++...       ....++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|++.++.         
T Consensus        62 ~~p~~~~~l~~~-------l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~---------  125 (212)
T PRK00312         62 SQPYMVARMTEL-------LELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL---------  125 (212)
T ss_pred             CcHHHHHHHHHh-------cCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence            344555555443       23446789999999999999988888779999998 6699999999987763         


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                          .++++...|..+.   ....++||+|++....      ..+.+.+.+.|+|||.+++...
T Consensus       126 ----~~v~~~~~d~~~~---~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        126 ----HNVSVRHGDGWKG---WPAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ----CceEEEECCcccC---CCcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence                2577777554321   1124689999987543      2345667889999999888665

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.38  E-value=4.6e-12  Score=101.56  Aligned_cols=101  Identities=21%  Similarity=0.302  Sum_probs=78.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||+|||+|..+..++..+.+|+++|. +++++.+++++..++.            ..++.+...|+.+.    
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~------------~~~i~~~~~d~~~~----  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV------------AGNVEFEVNDLLSL----  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEECChhhC----
Confidence            346789999999999999999998889999999 6699999999876642            13677777565432    


Q ss_pred             ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                        .++||+|++++++++.  .....+++.+.+++++++.+.+
T Consensus       117 --~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 --CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             --CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence              2689999999998664  3456678888888886655443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02672 methionine S-methyltransferase

Probab=99.38  E-value=1.4e-11  Score=116.97  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=104.3

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      -+..|++.+....      ...+++++|||||||+|.+++.+++..  ++|+++|+ +++++.+++|++.|++.-.....
T Consensus       101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~  174 (1082)
T PLN02672        101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV  174 (1082)
T ss_pred             hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence            4556777754321      123467899999999999999999874  47999999 66999999999998642000000


Q ss_pred             ---CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----------------------------------
Q 027530          118 ---GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------------------------  159 (222)
Q Consensus       118 ---~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------------------------  159 (222)
                         .......++++.+.||.+..  .....+||+||+|+++-...                                   
T Consensus       175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d  252 (1082)
T PLN02672        175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF  252 (1082)
T ss_pred             cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence               00011247899998886532  11123799999999863211                                   


Q ss_pred             ---CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHH-HHHHHHhcCCeEEEecCCC
Q 027530          160 ---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK  210 (222)
Q Consensus       160 ---~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~-~f~~~~~~~~~v~~v~~~~  210 (222)
                         .+..++....++|+|||.+++-...+...... ++++  +.+|....+...+
T Consensus       253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~~~~~~~~  305 (1082)
T PLN02672        253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRITKLWQTK  305 (1082)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCeeEEeeeh
Confidence               02456677778899999999887766654443 3443  3567665554443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.35  E-value=8.8e-11  Score=90.23  Aligned_cols=124  Identities=22%  Similarity=0.237  Sum_probs=89.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+++|+|||||.+++.++..+.  +|+++|. +++++..++|+++.+.             +++.++..+.-+. 
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-------------~n~~vv~g~Ap~~-   96 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-------------DNLEVVEGDAPEA-   96 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-------------CcEEEEeccchHh-
Confidence            345788999999999999999996664  7999998 6799999999998874             5888888443221 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCC-eEEEe
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF-NVKLV  206 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~-~v~~v  206 (222)
                       ++ ...+||.|+...-    ..++.+++++...|+|||++++-... -. .....++.+ +.++ ++.++
T Consensus        97 -L~-~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait-lE-~~~~a~~~~~~~g~~ei~~v  159 (187)
T COG2242          97 -LP-DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT-LE-TLAKALEALEQLGGREIVQV  159 (187)
T ss_pred             -hc-CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec-HH-HHHHHHHHHHHcCCceEEEE
Confidence             22 2237999987755    46889999999999999998765432 22 223334444 3455 45443

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.34  E-value=3.9e-11  Score=95.82  Aligned_cols=121  Identities=14%  Similarity=0.129  Sum_probs=92.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD  132 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~--------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d  132 (222)
                      ...+.+|||++||||-+++.+.+.        +.+|+..|+ ++||..+++...+..+.          ...++.++.  
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~----------~~~~~~w~~--  165 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK----------ASSRVEWVE--  165 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC----------cCCceEEEe--
Confidence            346689999999999999888764        246999999 78999998887664432          123467776  


Q ss_pred             cCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh-hHHHHHHH
Q 027530          133 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQ  195 (222)
Q Consensus       133 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-~~~~~f~~  195 (222)
                       ++.+.+++++..||....+--+-+..++...++..+++|||||++++-.-.+.. ...+.|.+
T Consensus       166 -~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~  228 (296)
T KOG1540|consen  166 -GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD  228 (296)
T ss_pred             -CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH
Confidence             555677788999999988888888889999999999999999999765444333 34444443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.34  E-value=1.6e-11  Score=101.50  Aligned_cols=122  Identities=24%  Similarity=0.180  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|++|||+-|-||-.|+.++..|| +|+.+|.+. +++.+++|++.|++.           ..++++...|+-+......
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~-----------~~~~~~~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD-----------LDRHRFIQGDVFKFLKRLK  191 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C-----------CTCEEEEES-HHHHHHHHH
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----------ccceEEEecCHHHHHHHHh
Confidence            679999999999999999999998 699999955 999999999999964           3577888765543211111


Q ss_pred             cCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          142 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      ...+||+||.-+|-|-..      .+..++..+.++++|||.++++.-...-. .+.|.+.+
T Consensus       192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~  252 (286)
T PF10672_consen  192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV  252 (286)
T ss_dssp             HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence            256899999998887532      35668888889999999987766544332 34455544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.34  E-value=9.3e-11  Score=92.42  Aligned_cols=129  Identities=18%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++.             .++++...|..+.  .
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-------------~~v~~~~~d~~~~--~  103 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-------------KNVEVIEGSAPEC--L  103 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CCeEEEECchHHH--H
Confidence            36789999999999999998865  368999999 6799999999988763             3577776554321  1


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh-HHHHHHHHHh-cCCeEEEecCCC
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMWK-SNFNVKLVPKAK  210 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~-~~~~f~~~~~-~~~~v~~v~~~~  210 (222)
                      ......+|.++...    ......+++.+.++|+|||.+++........ ...+.++..+ .++++.++....
T Consensus       104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (196)
T PRK07402        104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNR  172 (196)
T ss_pred             hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhh
Confidence            11223467665431    2356789999999999999998877643321 1223333332 367776665543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.6e-11  Score=96.16  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||||||+|..+..+|++..+|+.+|. ++..+.|++|++..+.             .+|.+.+.|=   ..-
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-------------~nV~v~~gDG---~~G  132 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-------------ENVTVRHGDG---SKG  132 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-------------CceEEEECCc---ccC
Confidence            4567899999999999999999999999999997 7799999999998874             3688887443   322


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .....+||.|+..-..      +.+-+.+.+.|++||++++-..
T Consensus       133 ~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         133 WPEEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence            2345799999876443      3344556677899999877544

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.33  E-value=2.2e-11  Score=102.43  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|.+++.+++.|.+|+++|+ ++|++.+++|+.......        ....++++...|+.+      
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~--------~~~~~~~f~~~Dl~~------  208 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL--------PPEVLPKFEANDLES------  208 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc--------ccccceEEEEcchhh------
Confidence            46789999999999999999999999999999 569999999987542110        011356666655432      


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+++||+|++.++++|...  ...+++.+.++ .+++. +++.
T Consensus       209 l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~  249 (315)
T PLN02585        209 LSGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF  249 (315)
T ss_pred             cCCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence            2468999999999876433  33456666643 45444 5554

>PRK06922 hypothetical protein; Provisional

Probab=99.31  E-value=1.5e-11  Score=110.66  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+ +.|++.++++...++              .++.+...|..+... 
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--------------~~ie~I~gDa~dLp~-  481 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--------------RSWNVIKGDAINLSS-  481 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--------------CCeEEEEcchHhCcc-
Confidence            46789999999999998888865  458999999 559999998876443              245666655433211 


Q ss_pred             cccCCCccEEEEeccccCc-------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...+++||+|+++.++++.             .....+++.+.++|+|||.+++...
T Consensus       482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            1345789999998877532             3457789999999999999999864

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.31  E-value=8.7e-11  Score=94.07  Aligned_cols=159  Identities=17%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC-
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-  118 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-  118 (222)
                      ....|.+|+...        ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+..   .+++........ 
T Consensus        22 p~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~   90 (218)
T PRK13255         22 VNPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGE   90 (218)
T ss_pred             CCHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCcccccccc
Confidence            356777777532        1225679999999999999999999999999999 558887632   333221100000 


Q ss_pred             -CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--------
Q 027530          119 -SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRST--------  187 (222)
Q Consensus       119 -~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~--------  187 (222)
                       ......+|++.+.|..+...  .....||.|+-..++.+  .+....+++.+.++|+|||++++......+        
T Consensus        91 ~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~  168 (218)
T PRK13255         91 FEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF  168 (218)
T ss_pred             ccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence             00123467777755543321  12357999997776544  345677999999999999975543321111        


Q ss_pred             -hHHHHHHHHHhcCCeEEEecCCCCC
Q 027530          188 -SVHEQMLQMWKSNFNVKLVPKAKES  212 (222)
Q Consensus       188 -~~~~~f~~~~~~~~~v~~v~~~~~~  212 (222)
                       -...++.+.+...|.++.+......
T Consensus       169 ~~~~~el~~~~~~~~~i~~~~~~~~~  194 (218)
T PRK13255        169 SVSDEEVEALYAGCFEIELLERQDVL  194 (218)
T ss_pred             CCCHHHHHHHhcCCceEEEeeecccc
Confidence             1234555555555777766665443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.30  E-value=1.3e-10  Score=99.99  Aligned_cols=143  Identities=12%  Similarity=0.081  Sum_probs=97.6

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      .+..|.+++.+..       . ..+.+||||+||+|.+|+.+++...+|+++|. +++++.+++|+..|++         
T Consensus       191 ~~e~l~~~v~~~~-------~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~---------  253 (362)
T PRK05031        191 VNEKMLEWALDAT-------K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI---------  253 (362)
T ss_pred             HHHHHHHHHHHHh-------h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC---------
Confidence            3556666665542       1 12357999999999999999988778999999 6699999999999974         


Q ss_pred             CCCCCceEEEEeecCCCcc-ccc------------cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          120 GNLLGSIQAVELDWGNEDH-IKA------------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~-~~~------------~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                          .++++...|..+... ...            ...+||+|+..++ + ....+.+++.+.+   |++.+|+++.+..
T Consensus       254 ----~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~t  324 (362)
T PRK05031        254 ----DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPET  324 (362)
T ss_pred             ----CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHH
Confidence                368888877644311 000            0225999999877 4 4566677777755   7899999987633


Q ss_pred             hhHHHHHHHHHhcCCeEEEecCCCCC
Q 027530          187 TSVHEQMLQMWKSNFNVKLVPKAKES  212 (222)
Q Consensus       187 ~~~~~~f~~~~~~~~~v~~v~~~~~~  212 (222)
                      .  ...+.. +..+|+++.+.--++-
T Consensus       325 l--arDl~~-L~~gY~l~~v~~~DmF  347 (362)
T PRK05031        325 L--CENLET-LSQTHKVERFALFDQF  347 (362)
T ss_pred             H--HHHHHH-HcCCcEEEEEEEcccC
Confidence            2  222322 3248888766554443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.30  E-value=6.9e-11  Score=94.41  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++.+|||+|||+|..+..+++.+.   +++++|. +.+++.++++..  .             ..++.+...+..+.   
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-------------~~~i~~~~~d~~~~---  100 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-------------PLNIEFIQADAEAL---  100 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-------------CCCceEEecchhcC---
Confidence            678999999999999998887754   7999999 568888888765  1             13567776555432   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +...++||+|+++..+.+......+++.+.++|+|||.+++....
T Consensus       101 ~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       101 PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            223568999999988888888899999999999999999887653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.30  E-value=1e-10  Score=100.25  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=103.7

Q ss_pred             CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhH
Q 027530           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVL   98 (222)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l   98 (222)
                      |..+.+.+.++++.-..  -.....|.+++.+..        ...+.+|||||||+|.+++.+++...+|+++|. ++++
T Consensus       163 ~~~~~~~~~~~~F~Q~N--~~~~~~l~~~v~~~~--------~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av  232 (353)
T TIGR02143       163 GREFIYRQVENSFTQPN--AAVNIKMLEWACEVT--------QGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSV  232 (353)
T ss_pred             CeEEEEEECCCCcccCC--HHHHHHHHHHHHHHh--------hcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHH
Confidence            33356666665433111  122345555555431        112346999999999999999988778999998 6799


Q ss_pred             HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc-----c---c-----CCCccEEEEeccccCccCHHHHH
Q 027530           99 PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK-----A---V-----APPFDYIIGTDVVYAEHLLEPLL  165 (222)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~---~-----~~~fD~Ii~~d~~y~~~~~~~ll  165 (222)
                      +.+++|++.|++             .++++...|..+.....     .   .     ...||+|+..++  .......++
T Consensus       233 ~~a~~n~~~~~~-------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l  297 (353)
T TIGR02143       233 NAAQYNIAANNI-------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTC  297 (353)
T ss_pred             HHHHHHHHHcCC-------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHH
Confidence            999999999974             36788876665422100     0   0     124899999877  356666777


Q ss_pred             HHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530          166 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE  211 (222)
Q Consensus       166 ~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~  211 (222)
                      +.+.+   |++.+|+++.+....  ..... +..+|+++.+.--++
T Consensus       298 ~~l~~---~~~ivYvsC~p~tla--RDl~~-L~~~Y~l~~v~~~Dm  337 (353)
T TIGR02143       298 KLVQA---YERILYISCNPETLK--ANLEQ-LSETHRVERFALFDQ  337 (353)
T ss_pred             HHHHc---CCcEEEEEcCHHHHH--HHHHH-HhcCcEEEEEEEccc
Confidence            77755   789999998765432  22222 223487766654333

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.30  E-value=3.3e-11  Score=95.61  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..+..+++.  +.+++++|+ ++|++.++++..                  ++.+...+..+    +
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------~~~~~~~d~~~----~  100 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------NINIIQGSLFD----P  100 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------CCcEEEeeccC----C
Confidence            5678999999999999999876  568999999 569999987642                  23445544433    2


Q ss_pred             ccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..+++||+|+++.++++..  ....+++.+.++++  +.++++.
T Consensus       101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i~e  142 (204)
T TIGR03587       101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYILIAE  142 (204)
T ss_pred             CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEEEEE
Confidence            3467899999999998753  34556666666653  4555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.30  E-value=2.7e-11  Score=107.78  Aligned_cols=104  Identities=21%  Similarity=0.175  Sum_probs=80.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++++|||||||+|..+..+++.+.+|+++|. +++++.+++   .++.            ..++.+...|..+.. .+.
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~------------~~~i~~~~~d~~~~~-~~~   99 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH------------YKNVKFMCADVTSPD-LNI   99 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc------------CCceEEEEecccccc-cCC
Confidence            35679999999999999999999889999998 568876543   2221            246788877764322 233


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+++||+|+++.++++...  ...+++.+.++|+|||.+++..
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            4678999999999887554  5789999999999999998853

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.30  E-value=4.2e-11  Score=96.40  Aligned_cols=96  Identities=20%  Similarity=0.266  Sum_probs=72.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++....+.            ..++.+...|+..      
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~------------~~~i~~~~~d~~~------  123 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL------------AGNITFEVGDLES------  123 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------------ccCcEEEEcCchh------
Confidence            45679999999999999999999999999999 5699999998876542            1367777755321      


Q ss_pred             cCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCe
Q 027530          142 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKT  176 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g  176 (222)
                      ..++||+|+++.++++.  .....+++.+.+.+++++
T Consensus       124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence            24689999999998553  345566777777665443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.29  E-value=1.3e-10  Score=92.47  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=82.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||||||+|..+..+++..   .+|+++|++++          +.             ..++.+.+.|+.+....
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~-------------~~~v~~i~~D~~~~~~~  106 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP-------------IVGVDFLQGDFRDELVL  106 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC-------------CCCcEEEecCCCChHHH
Confidence            467899999999999999888763   37999998552          11             12477888787764311


Q ss_pred             -----cccCCCccEEEEeccccCccC-----------HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          140 -----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       140 -----~~~~~~fD~Ii~~d~~y~~~~-----------~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                           .....+||+|+++...+....           ...+++.+.++|+|||.+++..... . ...+++..++..|.-
T Consensus       107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~  184 (209)
T PRK11188        107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTK  184 (209)
T ss_pred             HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceE
Confidence                 123578999999764443221           2468899999999999998865432 2 246777777777644


Q ss_pred             EEe
Q 027530          204 KLV  206 (222)
Q Consensus       204 ~~v  206 (222)
                      ..+
T Consensus       185 v~~  187 (209)
T PRK11188        185 VKV  187 (209)
T ss_pred             EEE
Confidence            333

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2.9e-11  Score=93.71  Aligned_cols=106  Identities=16%  Similarity=0.086  Sum_probs=81.7

Q ss_pred             eEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceE-EEEeecCCCccccccC
Q 027530           67 RVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQ-AVELDWGNEDHIKAVA  143 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~  143 (222)
                      .|||+|||||..=-+.- ..+.+||++|. +.|-+.+.+.++++.             ..++. ++..+-.+..+  ..+
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-------------~~~~~~fvva~ge~l~~--l~d  143 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-------------PLQVERFVVADGENLPQ--LAD  143 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-------------CcceEEEEeechhcCcc--ccc
Confidence            58999999996433222 34678999998 559999999888774             23444 44433332222  357


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      .+||+||+.-++....+....++.+.++|+|||++++..+.+.+
T Consensus       144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            89999999999999999999999999999999999998887765

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=1.6e-10  Score=93.13  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=94.3

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecchh-hHHHHHHHHHHhhccccccCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +..+.+++....+.    ...+++..+||+|||+|..++.++.. + ..|+++|.++ ++..+.+|++++++.       
T Consensus       130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-------  198 (328)
T KOG2904|consen  130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-------  198 (328)
T ss_pred             HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-------
Confidence            45566666554321    23456668999999999999988754 3 3599999965 999999999999864       


Q ss_pred             CCCCCCceEEE----EeecCCCccccccCCCccEEEEeccccCccC--------------------------HHHHHHHH
Q 027530          119 SGNLLGSIQAV----ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTI  168 (222)
Q Consensus       119 ~~~~~~~v~~~----~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------------~~~ll~~~  168 (222)
                           +.+.+.    +.+|.+.+.  ...+++|++++|+++-..++                          +..+..-.
T Consensus       199 -----g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a  271 (328)
T KOG2904|consen  199 -----GRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA  271 (328)
T ss_pred             -----CceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence                 566666    445544432  34689999999998744321                          33455666


Q ss_pred             HHhcCCCeEEEEEEEE--cChhHHHHHHH
Q 027530          169 FALSGPKTTILLGYEI--RSTSVHEQMLQ  195 (222)
Q Consensus       169 ~~~l~~~g~~~l~~~~--r~~~~~~~f~~  195 (222)
                      .+.|+|||.+++....  +++.....+..
T Consensus       272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~  300 (328)
T KOG2904|consen  272 TRMLQPGGFEQLELVERKEHSYLVRIWMI  300 (328)
T ss_pred             HhhcccCCeEEEEecccccCcHHHHHHHH
Confidence            7789999999998874  44433444443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.27  E-value=9.6e-12  Score=96.90  Aligned_cols=110  Identities=24%  Similarity=0.288  Sum_probs=78.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-I  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  139 (222)
                      .+|.+||||.||+|.+|+.++..|| +|+++|. .+++..+++|++.-+..            .++.+...|...... .
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~------------~~~~v~~~d~~~~l~~~  108 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE------------DKIRVIKGDAFKFLLKL  108 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G------------GGEEEEESSHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC------------cceeeeccCHHHHHHhh
Confidence            6889999999999999999999998 6999999 67999999999977643            356777644332211 1


Q ss_pred             cccCCCccEEEEeccccCccC-HHHHHHHHH--HhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~-~~~ll~~~~--~~l~~~g~~~l~~~~r  185 (222)
                      .....+||+|++.+|+ .... ...++..+.  .+|+++|.+++-+..+
T Consensus       109 ~~~~~~fDiIflDPPY-~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  109 AKKGEKFDIIFLDPPY-AKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHCTS-EEEEEE--ST-TSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             cccCCCceEEEECCCc-ccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            1236799999976664 4444 588888887  5799999988877665

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.27  E-value=2.1e-11  Score=100.81  Aligned_cols=104  Identities=23%  Similarity=0.332  Sum_probs=84.2

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.|+.|||+|||+|+++..+++.|+ +|++++.++|.+.++.-++-|.+            .++|.++.+..++.+ 
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~------------~~rItVI~GKiEdie-  239 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL------------ADRITVIPGKIEDIE-  239 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc------------cceEEEccCcccccc-
Confidence            4789999999999999999999999998 59999999999999999988865            378999986665543 


Q ss_pred             ccccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                         .+++.|+||+-+.-|   +..+++..+-. ++.|+|+|.++=
T Consensus       240 ---LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfP  280 (517)
T KOG1500|consen  240 ---LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFP  280 (517)
T ss_pred             ---CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccC
Confidence               367999999876654   44555554433 388999998774

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.27  E-value=5.4e-11  Score=82.36  Aligned_cols=100  Identities=22%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             eEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      +++|+|||+|..+..+++ .+.+++++|. ++++..++++...+.             ..++++...++.+...  ....
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~   65 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-------------ADNVEVLKGDAEELPP--EADE   65 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-------------ccceEEEEcChhhhcc--ccCC
Confidence            589999999999988887 4558999998 558888876433332             2467777766665432  2356


Q ss_pred             CccEEEEeccccC-ccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          145 PFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       145 ~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +||+|+++.++++ ......+++.+.+.++|+|.+++.
T Consensus        66 ~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          66 SFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            8999999999888 788889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.25  E-value=2.7e-10  Score=100.57  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=78.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+|||+|||+|..++.+++.   ..+|+++|+ +++++.+++|++++++.             ++++...|+.+...
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-------------~v~~~~~D~~~~~~  315 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------------NIETKALDARKVHE  315 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCCcccccc
Confidence            35689999999999999988875   357999999 66999999999988742             47788766654321


Q ss_pred             ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                        ...++||+|++..+.+...                      ....+++.+.++|+|||.++.+.
T Consensus       316 --~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        316 --KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             --hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence              1136899999876532211                      12357888889999999987654

>PHA03412 putative methyltransferase; Provisional

Probab=99.25  E-value=6.6e-11  Score=94.71  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=66.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.+|||+|||+|.+++.+++.     ..+|+++|+ +.+++.+++|+.                  ++.+...|.....
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------------------~~~~~~~D~~~~~  110 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------------------EATWINADALTTE  110 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------------------CCEEEEcchhccc
Confidence            3679999999999999988864     347999999 569999998754                  2345554443221


Q ss_pred             cccccCCCccEEEEeccccCcc------------CHHHHHHHHHHhcCCCeE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT  177 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~------------~~~~ll~~~~~~l~~~g~  177 (222)
                          .+.+||+||+|++++...            .+..++....+++++|+.
T Consensus       111 ----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        111 ----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence                246899999999987321            145578888886666664

>PHA03411 putative methyltransferase; Provisional

Probab=99.25  E-value=5.8e-11  Score=97.09  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +.+|||+|||+|.+++.++..  +.+|+++|+ +++++.+++|..                  ++.+...|..+..    
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------------------~v~~v~~D~~e~~----  122 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------------------EAEWITSDVFEFE----  122 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------------------CCEEEECchhhhc----
Confidence            458999999999999988775  458999999 669999887632                  3455554443221    


Q ss_pred             cCCCccEEEEeccccCccC--------------------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ...+||+|++++++++...                    +.++++....+|+|+|.+++++..
T Consensus       123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss  185 (279)
T PHA03411        123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG  185 (279)
T ss_pred             ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence            2468999999999986211                    356677777889999999888754

>PTZ00146 fibrillarin; Provisional

Probab=99.25  E-value=6e-10  Score=92.07  Aligned_cols=133  Identities=12%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027530           33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      ..-.++|+.-. .||..+..-+..    ....++.+|||||||+|..+..++...   ..|+++|+ +++++.+.+.+..
T Consensus       104 ~~eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~  179 (293)
T PTZ00146        104 KIEYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK  179 (293)
T ss_pred             cceeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh
Confidence            34478998533 344444332210    134577899999999999999999763   36999998 4566544443321


Q ss_pred             hhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          108 NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       108 n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .               .++.++..|...........+.||+|++.-.  ..+....++..+.++|||+|.+++..+.+.
T Consensus       180 r---------------~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~  241 (293)
T PTZ00146        180 R---------------PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC  241 (293)
T ss_pred             c---------------CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence            1               2455666554332212222357999987643  344455677788999999999999766544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.25  E-value=8.2e-12  Score=98.15  Aligned_cols=130  Identities=18%  Similarity=0.245  Sum_probs=91.4

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      +++||||||||+.|..+-.+..+.+++|+++ |++.+.++=-...+..          .+-+.     +..    ...+.
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~----------Aea~~-----Fl~----~~~~e  187 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV----------AEAVL-----FLE----DLTQE  187 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH----------HHHHH-----Hhh----hccCC
Confidence            6899999999999999999989999999965 8888765422111110          00000     111    12367


Q ss_pred             CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE-------------cChhHHHHHHHHH-hcCCeEEEecCCC
Q 027530          145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RSTSVHEQMLQMW-KSNFNVKLVPKAK  210 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~-------------r~~~~~~~f~~~~-~~~~~v~~v~~~~  210 (222)
                      +||+|.+.|++-....++.++-....+|+|||.+.++...             |..+........+ ..+|.+..+....
T Consensus       188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt  267 (287)
T COG4976         188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT  267 (287)
T ss_pred             cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence            8999999999988999999999999999999999887632             2222223333444 3588887777766


Q ss_pred             CCcc
Q 027530          211 ESTM  214 (222)
Q Consensus       211 ~~~~  214 (222)
                      ++..
T Consensus       268 iR~d  271 (287)
T COG4976         268 IRRD  271 (287)
T ss_pred             chhh
Confidence            5543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=1.6e-10  Score=97.43  Aligned_cols=99  Identities=23%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++...   .|+++|. +++++.+++|++.++.             .++.+...|..+. 
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-------------~nV~~i~gD~~~~-  143 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-------------ENVIFVCGDGYYG-  143 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEeCChhhc-
Confidence            34678999999999999999987642   5999998 6699999999988763             3577776553321 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                        .....+||+|+++..+      ..+...+.+.|+|||++++..
T Consensus       144 --~~~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        144 --VPEFAPYDVIFVTVGV------DEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             --ccccCCccEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence              1123579999986332      234455677899999987754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=2.9e-10  Score=99.87  Aligned_cols=105  Identities=21%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+|.+|||+|||+|..++.++..+  .+|+++|. ++++..+++|+++++.              .+++...|..+....
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--------------~~~~~~~D~~~~~~~  308 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--------------KATVIVGDARDPAQW  308 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEcCcccchhh
Confidence            467899999999999999998875  48999999 6699999999998763              245666554432110


Q ss_pred             cccCCCccEEEEeccccCc----------------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAE----------------------HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~----------------------~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       ....+||.|++..+....                      .....++..+.++|+|||.+++++
T Consensus       309 -~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        309 -WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             -cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             124679999976654311                      012368888889999999988765

>PRK06202 hypothetical protein; Provisional

Probab=99.24  E-value=7.3e-11  Score=95.42  Aligned_cols=102  Identities=19%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ++.+|||||||+|..+..+++.    |  .+|+++|. ++|++.++++...++                +.+...+-...
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----------------~~~~~~~~~~l  123 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----------------VTFRQAVSDEL  123 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----------------CeEEEEecccc
Confidence            5579999999999998888753    4  48999999 669999988765332                33333322221


Q ss_pred             ccccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                         +..+++||+|+++.++++...  ...+++.+.++++  |.+++....|.
T Consensus       124 ---~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        124 ---VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             ---cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence               223578999999999988655  4568899998887  55555555554

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.23  E-value=1.1e-10  Score=94.52  Aligned_cols=103  Identities=15%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +.++|||+|||+|..++.++..   +.+|+++|. +++++.+++|++.+++.            .++++...|+.+... 
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~------------~~i~~~~gda~~~L~~  135 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD------------HKINFIQSDALSALDQ  135 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEccHHHHHHH
Confidence            5689999999999988877754   358999999 67999999999998853            578888877654311 


Q ss_pred             cc--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +.  ...++||+|+....   ......++..+.++++|||.+++-
T Consensus       136 l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            10  11468999986421   345667888999999999988763

>PLN03075 nicotianamine synthase; Provisional

Probab=99.23  E-value=1.8e-10  Score=95.43  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=80.1

Q ss_pred             CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G-~~~i~la~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++|+|||||.| +.++.++. .  +.+++++|. +++++.|+++++. .++            ..+++|...|..+..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------------~~rV~F~~~Da~~~~  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------------SKRMFFHTADVMDVT  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------------cCCcEEEECchhhcc
Confidence            6689999999965 55665553 3  347999999 6799999999864 332            357999987765431


Q ss_pred             cccccCCCccEEEEeccccC-ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         ....+||+|++.-++|+ ......+++.+.+.|+|||.+++..
T Consensus       191 ---~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        191 ---ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ---cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence               12468999999955565 3788999999999999999998865

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=4.8e-11  Score=98.34  Aligned_cols=118  Identities=15%  Similarity=0.152  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEecc-hhhHHHHHHHHHH----hhcccc-------ccCC---
Q 027530           64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEW----NTSRIS-------QMNP---  117 (222)
Q Consensus        64 ~~~~vLelGcG~G~----~~i~la~~-------g~~v~~~D~-~~~l~~~~~n~~~----n~~~~~-------~~~~---  117 (222)
                      ++.+|||+|||+|-    +++.++..       +.+|+++|+ ++|++.|++++..    .+++..       ....   
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            44689999999995    45555553       247999999 5699999986421    111000       0000   


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .++....+|.+.+.|..+.   +...++||+|++..++.+.+  ....+++.+.+.|+|||.++++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~---~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      179 VKPELKERVRFAKHNLLAE---SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             EChHHhCcCEEeeccCCCC---CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence            0001123677777666543   22367899999988876643  4567999999999999999987643

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.22  E-value=6.6e-10  Score=97.82  Aligned_cols=107  Identities=20%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.++++   ..+|+++|. +++++.+++|+++++..             ++.+...|..+...
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-------------~v~~~~~D~~~~~~  317 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-------------SIKILAADSRNLLE  317 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------eEEEEeCChhhccc
Confidence            46789999999999999988876   247999998 66999999999988742             57777755543321


Q ss_pred             c-cccCCCccEEEEecc------ccCccC----------------HHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 I-KAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~-~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      . ....++||.|+...+      +...+.                ...++..+.++|+|||+++.++
T Consensus       318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            1 022468999997533      221111                3567888899999999887654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.20  E-value=1.5e-10  Score=95.80  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.+|||+|||+|..+..+++..     ..|+++|+ +++++.++++.                  .++.+...|..+  
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------------~~~~~~~~d~~~--  144 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------------PQVTFCVASSHR--  144 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------------CCCeEEEeeccc--
Confidence            44689999999999998887652     36999999 56998886542                  145566555432  


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       .+..+++||+|++...       ...++.+.++|+|||.++++.+.
T Consensus       145 -lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        145 -LPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             -CCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence             3445678999997532       23467889999999999987654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.20  E-value=3e-10  Score=87.48  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++|+..+               .++++...|..+..   .
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---------------~~v~ii~~D~~~~~---~   73 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---------------DNLTVIHGDALKFD---L   73 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---------------CCEEEEECchhcCC---c
Confidence            46679999999999999999998889999999 56999999887531               36778876665432   2


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHh--cCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~l~~  182 (222)
                      .+..||.|+++.+++.   ..+++..+.+.  +.++|.+++..
T Consensus        74 ~~~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       74 PKLQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cccCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence            2346999999877643   23333333332  34666665543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=7.4e-10  Score=84.25  Aligned_cols=128  Identities=19%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+-|||||||+|.++-.+++. +  +.+.+||+ +++++..++.++.|+.              .+..++-|..+.-   
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--------------~~~~V~tdl~~~l---  106 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--------------HIDVVRTDLLSGL---  106 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--------------ccceeehhHHhhh---
Confidence            357999999999999988875 3  34889999 7899999999998874              4566664443221   


Q ss_pred             ccCCCccEEEEeccccCc---------------------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-h
Q 027530          141 AVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-K  198 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~---------------------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~  198 (222)
                       ..++.|+++.++++--.                     .....++..+..+|+|.|.+|+..-.++..  ++.++.+ +
T Consensus       107 -~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~  183 (209)
T KOG3191|consen  107 -RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEK  183 (209)
T ss_pred             -ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhh
Confidence             13899999999886321                     125668888889999999999998877764  5556655 4


Q ss_pred             cCCeEEEecCCCCC
Q 027530          199 SNFNVKLVPKAKES  212 (222)
Q Consensus       199 ~~~~v~~v~~~~~~  212 (222)
                      .+|.+.....++..
T Consensus       184 ~g~~~~~~~~Rk~~  197 (209)
T KOG3191|consen  184 KGYGVRIAMQRKAG  197 (209)
T ss_pred             cccceeEEEEEecC
Confidence            57777665554443

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.19  E-value=1.6e-10  Score=91.79  Aligned_cols=101  Identities=24%  Similarity=0.299  Sum_probs=72.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||||||+|..+..++.+ |.  +|+++|. +++.+.+++|++..+.             .++.+...|-   
T Consensus        69 ~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-------------~nv~~~~gdg---  132 (209)
T PF01135_consen   69 DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-------------DNVEVVVGDG---  132 (209)
T ss_dssp             TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-------------HSEEEEES-G---
T ss_pred             hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-------------CceeEEEcch---
Confidence            4568899999999999999999987 43  5999998 6799999999998874             3788887553   


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ........+||.|+..-..  .    .+-..+.+.|++||++++-..
T Consensus       133 ~~g~~~~apfD~I~v~~a~--~----~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  133 SEGWPEEAPFDRIIVTAAV--P----EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GGTTGGG-SEEEEEESSBB--S----S--HHHHHTEEEEEEEEEEES
T ss_pred             hhccccCCCcCEEEEeecc--c----hHHHHHHHhcCCCcEEEEEEc
Confidence            2222235689999987655  2    233456677899999877544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.8e-11  Score=88.70  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=78.4

Q ss_pred             CeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027530           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV   97 (222)
Q Consensus        20 ~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~   97 (222)
                      ...+-++|+|+.++.+       .-+..-+.+.       -.+++|++++|||||+|.+++..+..+.+ |+|+|+ +++
T Consensus        18 Kpk~~LEQY~T~p~iA-------asM~~~Ih~T-------ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeA   83 (185)
T KOG3420|consen   18 KPKLLLEQYPTRPHIA-------ASMLYTIHNT-------YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEA   83 (185)
T ss_pred             ccchhhhhCCCcHHHH-------HHHHHHHHhh-------hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHH
Confidence            3456677888665543       2333344443       36789999999999999999988888885 999999 789


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC
Q 027530           98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~  157 (222)
                      ++.+.+|++.-.+              ++.+.+.+..+..   ...+.||..+.++++--
T Consensus        84 LEIf~rNaeEfEv--------------qidlLqcdildle---~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen   84 LEIFTRNAEEFEV--------------QIDLLQCDILDLE---LKGGIFDTAVINPPFGT  126 (185)
T ss_pred             HHHHhhchHHhhh--------------hhheeeeeccchh---ccCCeEeeEEecCCCCc
Confidence            9999999986543              4566665554432   23588999999988743

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.19  E-value=2.1e-10  Score=98.40  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+..+||||||+|...+.+|+..  ..++|+|+ ..++..+.+++..+++             .++.+.+.|...... .
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-------------~NV~~i~~DA~~ll~-~  187 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-------------KNLLIINYDARLLLE-L  187 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEECCHHHhhh-h
Confidence            45689999999999999999885  46999998 6699999999988764             378888877543221 2


Q ss_pred             ccCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..++++|.|+.+-+.-|..      ....+++.+.++|+|||.+++.+..
T Consensus       188 ~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        188 LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            3467899999875443322      1267999999999999999987654

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.18  E-value=5.4e-10  Score=92.15  Aligned_cols=105  Identities=17%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.++.+   ...|+++|. +++++.+++|+++++.             .++.+...|....  
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-------------~~v~~~~~D~~~~--  134 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-------------LNVAVTNFDGRVF--  134 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------------CcEEEecCCHHHh--
Confidence            36789999999999999888875   247999999 6699999999998874             2577776554322  


Q ss_pred             ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ....++||.|+...+-....                      ....+++...++|+|||+++.+.-
T Consensus       135 -~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       135 -GAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             -hhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             11235699999765432210                      124488888889999998877653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.2e-10  Score=99.02  Aligned_cols=143  Identities=14%  Similarity=0.093  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +..|.+++.+.+       ...++.++||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+..         
T Consensus       278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~---------  341 (432)
T COG2265         278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID---------  341 (432)
T ss_pred             HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC---------
Confidence            456666666653       3446679999999999999999999999999998 77999999999999853         


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hc
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KS  199 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~  199 (222)
                          ++++...+..+..........+|.||..++-  ...-+.+++.+.+. +|..++|+++.+   .++.+-+..+ ..
T Consensus       342 ----N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP---~TlaRDl~~L~~~  411 (432)
T COG2265         342 ----NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNP---ATLARDLAILAST  411 (432)
T ss_pred             ----cEEEEeCCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCH---HHHHHHHHHHHhC
Confidence                6888886655443322234689999998875  55556788887765 778899999865   3444555555 45


Q ss_pred             CCeEEEecCCC
Q 027530          200 NFNVKLVPKAK  210 (222)
Q Consensus       200 ~~~v~~v~~~~  210 (222)
                      ++.++++.--+
T Consensus       412 gy~i~~v~~~D  422 (432)
T COG2265         412 GYEIERVQPFD  422 (432)
T ss_pred             CeEEEEEEEec
Confidence            77676655433

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=99.17  E-value=9.8e-12  Score=100.99  Aligned_cols=148  Identities=22%  Similarity=0.267  Sum_probs=99.7

Q ss_pred             CCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHH
Q 027530           29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNV  105 (222)
Q Consensus        29 ~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~-~~~n~  105 (222)
                      |+.+..|.++|.|+..|..++.+.. .+   .-.+.|++|||||||+|+.++.+...|+ .+.+.|+ .+.++. .-.|+
T Consensus        85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~  160 (282)
T KOG2920|consen   85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI  160 (282)
T ss_pred             CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence            5578899999999999999998663 11   2457899999999999999999999994 7999998 556632 22233


Q ss_pred             HHhhccccccCCCCCCCCCceEEEEe---ecCCCccccccCCCccEEEEeccccCccCHHHH-HHHHHHhcCCCeEEEEE
Q 027530          106 EWNTSRISQMNPGSGNLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLG  181 (222)
Q Consensus       106 ~~n~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~l-l~~~~~~l~~~g~~~l~  181 (222)
                      ..|-....+    .++...-..+..-   ||.-...   ..-.||+|+++..+|.......+ ......++++.|++|++
T Consensus       161 ~~~~~~~~~----~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  161 LVNSHAGVE----EKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             ecchhhhhh----hhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence            322211000    0000111112222   5521111   01389999999999999888888 66667778999999998


Q ss_pred             EEEcCh
Q 027530          182 YEIRST  187 (222)
Q Consensus       182 ~~~r~~  187 (222)
                      .+.-+.
T Consensus       234 AK~~yF  239 (282)
T KOG2920|consen  234 AKKLYF  239 (282)
T ss_pred             hHhhcc
Confidence            765443

>TIGR03438 probable methyltransferase

Probab=99.17  E-value=3e-10  Score=95.40  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=75.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++.+|||||||+|..+..+++.   +.+|+++|+ ++|++.+++++.....            ..++...+.|..+....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p------------~~~v~~i~gD~~~~~~~  130 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP------------QLEVHGICADFTQPLAL  130 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC------------CceEEEEEEcccchhhh
Confidence            5578999999999999888876   568999999 5699999998875321            13456667666543221


Q ss_pred             ccc--CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAV--APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~--~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ...  .....++++..++++.  .....+++.+.+.|+|||.+++.....
T Consensus       131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            111  1122334444456553  346679999999999999999876543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.16  E-value=2.8e-10  Score=86.61  Aligned_cols=146  Identities=21%  Similarity=0.285  Sum_probs=97.8

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCC-eEEEeCCCccHHHHHHHHhCC--EEEEecch-hhHHHHHHHHHHhhccccccC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGK-RVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~-~vLelGcG~G~~~i~la~~g~--~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      +-..+.+|+..++...++    .+.. +|||||||.|.+-.-|++.|.  +.+++|++ .++++|+.-+++++.+     
T Consensus        47 ae~riv~wl~d~~~~~rv----~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-----  117 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRV----SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-----  117 (227)
T ss_pred             HHHHHHHHHHhhhhhhhh----cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-----
Confidence            456778888877542221    1222 899999999999999999887  49999995 5999988777777753     


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--------ccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                             ..|++.++|..++   ....++||+|+--..+-.        ..-+.-.+..+.++|+|+|+++|..=.   .
T Consensus       118 -------n~I~f~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---~  184 (227)
T KOG1271|consen  118 -------NEIRFQQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---F  184 (227)
T ss_pred             -------cceeEEEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC---c
Confidence                   4599999888765   223567777753322211        111234678889999999999885433   2


Q ss_pred             HHHHHHHHHhc-CCeE-EEecC
Q 027530          189 VHEQMLQMWKS-NFNV-KLVPK  208 (222)
Q Consensus       189 ~~~~f~~~~~~-~~~v-~~v~~  208 (222)
                      +..++.+.+.. +|.+ ..||.
T Consensus       185 T~dELv~~f~~~~f~~~~tvp~  206 (227)
T KOG1271|consen  185 TKDELVEEFENFNFEYLSTVPT  206 (227)
T ss_pred             cHHHHHHHHhcCCeEEEEeecc
Confidence            34566666654 4654 34443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=6.5e-10  Score=97.62  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.++.+   +.+|+++|. +++++.+++|+++.++             .++.+...|+.+...
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-------------~~v~~~~~Da~~l~~  302 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-------------SSIEIKIADAERLTE  302 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEECchhhhhh
Confidence            46789999999999999888875   458999999 5699999999998764             257777766543321


Q ss_pred             ccccCCCccEEEEeccccCcc----------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~----------------------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        ...++||.|++..+-....                      ....++..+.++|+|||.++.++-
T Consensus       303 --~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        303 --YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             --hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence              2246799999754432111                      124568888899999999877653

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.15  E-value=1.6e-10  Score=97.18  Aligned_cols=84  Identities=18%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEE-eecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVE-LDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~  138 (222)
                      .+.++||||||+|.+...++..  +.+++++|+ +.+++.|++|++.| ++.            .++.+.. .+-.+...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~------------~~I~~~~~~~~~~i~~  181 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN------------GAIRLRLQKDSKAIFK  181 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc------------CcEEEEEccchhhhhh
Confidence            4578999999999777666654  668999999 66999999999999 553            4566543 11111111


Q ss_pred             -ccccCCCccEEEEeccccCcc
Q 027530          139 -IKAVAPPFDYIIGTDVVYAEH  159 (222)
Q Consensus       139 -~~~~~~~fD~Ii~~d~~y~~~  159 (222)
                       .....++||+|++|+++|...
T Consensus       182 ~i~~~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        182 GIIHKNERFDATLCNPPFHASA  203 (321)
T ss_pred             cccccCCceEEEEeCCCCcCcc
Confidence             111356899999999988643

>PRK04457 spermidine synthase; Provisional

Probab=99.15  E-value=4.2e-10  Score=92.62  Aligned_cols=122  Identities=11%  Similarity=0.142  Sum_probs=85.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.++|||||||+|.++..+++.  +.+|+++|+ +++++.+++++..+.            ...++++...|..+..  .
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~------------~~~rv~v~~~Da~~~l--~  131 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE------------NGERFEVIEADGAEYI--A  131 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC------------CCCceEEEECCHHHHH--H
Confidence            4578999999999999988876  457999999 679999999876443            1247888875543321  1


Q ss_pred             ccCCCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~  202 (222)
                      ...++||+|+.. . |+..      ....+++.+.++|+|||++++....+.. ....+.+.++..|.
T Consensus       132 ~~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~  196 (262)
T PRK04457        132 VHRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE  196 (262)
T ss_pred             hCCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence            224689999974 2 2221      2368999999999999998875443433 24556666666563

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.14  E-value=2.6e-09  Score=83.61  Aligned_cols=118  Identities=16%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+|||+|||+|.++..++...   .+|+++|++++.          ..             .++.+...|+.+..
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-------------~~i~~~~~d~~~~~   85 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-------------ENVDFIRGDFTDEE   85 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-------------CCceEEEeeCCChh
Confidence            34578899999999999998888653   369999995532          10             24566666665432


Q ss_pred             cc-----cccCCCccEEEEecccc--C---cc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530          138 HI-----KAVAPPFDYIIGTDVVY--A---EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       138 ~~-----~~~~~~fD~Ii~~d~~y--~---~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~  201 (222)
                      ..     ....++||+|++..+.+  .   ..      ....++..+.++|+|||++++.......  ...++..++..|
T Consensus        86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~--~~~~l~~l~~~~  163 (188)
T TIGR00438        86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE--IDEYLNELRKLF  163 (188)
T ss_pred             HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc--HHHHHHHHHhhh
Confidence            11     12356799999864321  1   11      1367889999999999999986533222  345666655555


Q ss_pred             eE
Q 027530          202 NV  203 (222)
Q Consensus       202 ~v  203 (222)
                      .-
T Consensus       164 ~~  165 (188)
T TIGR00438       164 EK  165 (188)
T ss_pred             ce
Confidence            43

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.14  E-value=4.1e-10  Score=86.93  Aligned_cols=111  Identities=23%  Similarity=0.326  Sum_probs=79.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++|.+||||-+|+|.+|+.++..|+ +++++|. .+++..+++|++.-+..            .++.+...|.......
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~------------~~~~~~~~da~~~L~~  108 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE------------GEARVLRNDALRALKQ  108 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc------------cceEEEeecHHHHHHh
Confidence            47999999999999999999999998 5999999 56999999999876532            4566666444311111


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHH----HhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~----~~l~~~g~~~l~~~~r  185 (222)
                      ....++||+|+.-++ |.....+.....+.    .+|+|++.+++-+...
T Consensus       109 ~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         109 LGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            111235999997655 55565544333333    4699999988876544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.14  E-value=6.7e-10  Score=87.02  Aligned_cols=118  Identities=19%  Similarity=0.275  Sum_probs=87.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ...-|||||||+|+.|-.+...|...+++|+ +.|++.+.+. +..+                 .+...|.+  ..+++.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg-----------------dlil~DMG--~Glpfr  109 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG-----------------DLILCDMG--EGLPFR  109 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc-----------------CeeeeecC--CCCCCC
Confidence            4567999999999999999999988999999 6799999862 2112                 44566667  445666


Q ss_pred             CCCccEEEEeccccCc-------cC----HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCC
Q 027530          143 APPFDYIIGTDVVYAE-------HL----LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF  201 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~-------~~----~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~  201 (222)
                      ++.||-+|+-..+.+.       +.    +..|+.++..+|++++++++.+.+.+....+.+.+.. +.+|
T Consensus       110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF  180 (270)
T KOG1541|consen  110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF  180 (270)
T ss_pred             CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence            8999998876555431       11    3457888999999999999998887776555554443 4565

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.13  E-value=1.8e-10  Score=89.96  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .-.+|.|||||+|..+-.+++.  ++.++|+|. ++|++.|+...                  .++++...|..+..   
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------p~~~f~~aDl~~w~---   88 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------PDATFEEADLRTWK---   88 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------------CCCceecccHhhcC---
Confidence            3458999999999999998887  678999998 67998885532                  35667665544332   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       +..++|+|++|-++.+..++..++..+-..|.|||.+-+..+
T Consensus        89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP  130 (257)
T COG4106          89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP  130 (257)
T ss_pred             -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence             357899999999999999999999999999999998777654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=1.5e-09  Score=95.85  Aligned_cols=132  Identities=19%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (222)
Q Consensus        37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (222)
                      .+++.+..++-.+.          ...+|.+|||+|||+|..++.++..   +.+|+++|. +++++.+++|++++++  
T Consensus       233 ~vqd~~s~l~~~~l----------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--  300 (445)
T PRK14904        233 SVQNPTQALACLLL----------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--  300 (445)
T ss_pred             EEeCHHHHHHHHhc----------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence            46654444444443          2346789999999999998887764   358999999 6699999999998774  


Q ss_pred             cccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccc------cCc---------c-------CHHHHHHHHHH
Q 027530          113 SQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YAE---------H-------LLEPLLQTIFA  170 (222)
Q Consensus       113 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~------y~~---------~-------~~~~ll~~~~~  170 (222)
                                 .++++...|..+..    ...+||.|+...+-      ...         .       ....++..+.+
T Consensus       301 -----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~  365 (445)
T PRK14904        301 -----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS  365 (445)
T ss_pred             -----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence                       25777776654332    24679999863221      100         0       12357888899


Q ss_pred             hcCCCeEEEEEEEEc----ChhHHHHHHH
Q 027530          171 LSGPKTTILLGYEIR----STSVHEQMLQ  195 (222)
Q Consensus       171 ~l~~~g~~~l~~~~r----~~~~~~~f~~  195 (222)
                      +|+|||++++++-.-    +..+...|++
T Consensus       366 ~lkpgG~lvystcs~~~~Ene~~v~~~l~  394 (445)
T PRK14904        366 LLKPGGVLVYATCSIEPEENELQIEAFLQ  394 (445)
T ss_pred             hcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence            999999998876332    2233455665

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.10  E-value=2.1e-09  Score=94.43  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=87.5

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      .++..++.++.           ..+|.+|||+|||+|..++.+++. + ++|+++|. +++++.+++|+++++..     
T Consensus       225 ~~s~~~~~~L~-----------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-----  288 (426)
T TIGR00563       225 ASAQWVATWLA-----------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-----  288 (426)
T ss_pred             HHHHHHHHHhC-----------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence            45666666663           236789999999999999988875 3 58999999 66999999999987742     


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc------ccCccC----------------HHHHHHHHHHhcCC
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGP  174 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~------~y~~~~----------------~~~ll~~~~~~l~~  174 (222)
                             ..+.+...|...... .....+||.|+...+      +...+.                ...++..+.++|+|
T Consensus       289 -------~~v~~~~~d~~~~~~-~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp  360 (426)
T TIGR00563       289 -------IKAETKDGDGRGPSQ-WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT  360 (426)
T ss_pred             -------eEEEEeccccccccc-cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                   123334333221110 012467999986432      222111                35688889999999


Q ss_pred             CeEEEEEEEE----cChhHHHHHHHH
Q 027530          175 KTTILLGYEI----RSTSVHEQMLQM  196 (222)
Q Consensus       175 ~g~~~l~~~~----r~~~~~~~f~~~  196 (222)
                      ||.+++++-.    -+......|++.
T Consensus       361 gG~lvystcs~~~~Ene~~v~~~l~~  386 (426)
T TIGR00563       361 GGTLVYATCSVLPEENSEQIKAFLQE  386 (426)
T ss_pred             CcEEEEEeCCCChhhCHHHHHHHHHh
Confidence            9999876432    233445566654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.09  E-value=2.9e-09  Score=91.23  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=100.1

Q ss_pred             EcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027530           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE   96 (222)
Q Consensus        18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~   96 (222)
                      +.+..+++...|+++.-  .-+.....|.+++.+.+       ...++ +||||-||+|..|+.+|..+.+|+|+|. ++
T Consensus       160 ~~~~~~~~~~~~~sFfQ--vN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~  229 (352)
T PF05958_consen  160 IQDKGLSFRISPGSFFQ--VNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE  229 (352)
T ss_dssp             ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred             eeccceEEEECCCcCcc--CcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence            34445666666654332  23345667777776653       22233 7999999999999999999999999998 67


Q ss_pred             hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc----------c---cccCCCccEEEEeccccCccCHHH
Q 027530           97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH----------I---KAVAPPFDYIIGTDVVYAEHLLEP  163 (222)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----------~---~~~~~~fD~Ii~~d~~y~~~~~~~  163 (222)
                      +++.|++|++.|++.             ++++..++..+...          .   ......+|+||..+|-  ...-+.
T Consensus       230 av~~A~~Na~~N~i~-------------n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR--~G~~~~  294 (352)
T PF05958_consen  230 AVEDARENAKLNGID-------------NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR--AGLDEK  294 (352)
T ss_dssp             HHHHHHHHHHHTT---------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T--T-SCHH
T ss_pred             HHHHHHHHHHHcCCC-------------cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC--CCchHH
Confidence            999999999999863             78888755433211          0   0113468999988775  444556


Q ss_pred             HHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCCC
Q 027530          164 LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE  211 (222)
Q Consensus       164 ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~  211 (222)
                      +++.+.+   +.-++|+++.+....  +.. ..+.++|.++.+.--++
T Consensus       295 ~~~~~~~---~~~ivYvSCnP~tla--RDl-~~L~~~y~~~~v~~~Dm  336 (352)
T PF05958_consen  295 VIELIKK---LKRIVYVSCNPATLA--RDL-KILKEGYKLEKVQPVDM  336 (352)
T ss_dssp             HHHHHHH---SSEEEEEES-HHHHH--HHH-HHHHCCEEEEEEEEE-S
T ss_pred             HHHHHhc---CCeEEEEECCHHHHH--HHH-HHHhhcCEEEEEEEeec
Confidence            6666654   357899998764432  222 33445888876554333

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.07  E-value=7.8e-09  Score=82.87  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccc--cccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--SQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~--~~~~~  117 (222)
                      ....|.+|+..-        ...++.+||..|||.|.-.+.||.+|.+|+++|+++ +++.+.+   .|++..  .+...
T Consensus        28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~   96 (226)
T PRK13256         28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND   96 (226)
T ss_pred             CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence            467888887543        122567999999999999999999999999999954 8887744   222110  00000


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--------
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST--------  187 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~--------  187 (222)
                      ........+++.+.|+-+........++||+|+=..++.  ..+.....++.+.++|+|||.+++..-.-..        
T Consensus        97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~  176 (226)
T PRK13256         97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS  176 (226)
T ss_pred             cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence            000123467888866654432112236899987554443  3566778999999999999988765432111        


Q ss_pred             hHHHHHHHHHhcCCeEEEecCC
Q 027530          188 SVHEQMLQMWKSNFNVKLVPKA  209 (222)
Q Consensus       188 ~~~~~f~~~~~~~~~v~~v~~~  209 (222)
                      -..++..+.+...|.++.+...
T Consensus       177 v~~~e~~~lf~~~~~i~~l~~~  198 (226)
T PRK13256        177 VTQAELIKNFSAKIKFELIDSK  198 (226)
T ss_pred             CCHHHHHHhccCCceEEEeeec
Confidence            1234555666777888777653

>PLN02476 O-methyltransferase

Probab=99.05  E-value=5.4e-09  Score=86.18  Aligned_cols=129  Identities=12%  Similarity=0.204  Sum_probs=91.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +.++|||||+|+|..++.+|..   +.+|+.+|. ++..+.+++|++++++.            .++++...+..+... 
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~------------~~I~li~GdA~e~L~~  185 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS------------HKVNVKHGLAAESLKS  185 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence            5689999999999999999874   457999999 67999999999998853            578888755543211 


Q ss_pred             c--cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh------------HHHHHHHHHhc--CCe
Q 027530          139 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~------------~~~~f~~~~~~--~~~  202 (222)
                      +  ....++||+|+.-..   ......++..+.++|+|||.+++-.......            ...+|.+.+..  .+.
T Consensus       186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~  262 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVS  262 (278)
T ss_pred             HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence            1  011368999986532   5667888999999999999977643222111            24667776643  455


Q ss_pred             EEEec
Q 027530          203 VKLVP  207 (222)
Q Consensus       203 v~~v~  207 (222)
                      ...+|
T Consensus       263 ~~llP  267 (278)
T PLN02476        263 ISMVP  267 (278)
T ss_pred             EEEEE
Confidence            55554

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=9e-10  Score=85.20  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=68.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|.+|||||||.|.+-..|.. ++.+..|+|++ +.+..+.+    +                -+.+++.|..+.- ..+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r----------------Gv~Viq~Dld~gL-~~f   71 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R----------------GVSVIQGDLDEGL-ADF   71 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c----------------CCCEEECCHHHhH-hhC
Confidence            568999999999987766665 67789999984 44333322    2                3467887766432 235


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ++++||+||.+.++........+++.+.++   |..++++.+
T Consensus        72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFP  110 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFP  110 (193)
T ss_pred             CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEec
Confidence            688999999999998877777787777655   556666654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.03  E-value=1.6e-09  Score=85.78  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=90.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +-++||||||++|..++.+|+.   +++|+.+|. ++..+.+++|++..+..            .+|++...+..+... 
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~------------~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD------------DRIEVIEGDALEVLPE  112 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG------------GGEEEEES-HHHHHHH
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC------------CcEEEEEeccHhhHHH
Confidence            4479999999999999999964   578999999 67999999999998853            588998866543211 


Q ss_pred             ccc--cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----------h--HHHHHHHHHhc--CCe
Q 027530          139 IKA--VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~~~--~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----------~--~~~~f~~~~~~--~~~  202 (222)
                      +..  ..++||+|+.-.   ........+..+.++|+|||.+++-......          .  ....|.+.+..  .|+
T Consensus       113 l~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~  189 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFE  189 (205)
T ss_dssp             HHHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEE
T ss_pred             HHhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCee
Confidence            111  135899999653   3567778888899999999987664322111          1  14567777653  455


Q ss_pred             EEEec
Q 027530          203 VKLVP  207 (222)
Q Consensus       203 v~~v~  207 (222)
                      ...+|
T Consensus       190 ~~llp  194 (205)
T PF01596_consen  190 TVLLP  194 (205)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.03  E-value=1.4e-09  Score=93.87  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +.+|||++||+|..|+.++.. ++ +|+++|. +++++.+++|++.|++.             ++.+...|.....  ..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-------------~~~v~~~Da~~~l--~~  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-------------NEKVFNKDANALL--HE  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------ceEEEhhhHHHHH--hh
Confidence            468999999999999999875 43 7999999 67999999999999853             4556665543211  11


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       .++||+|+..+ +   ....+++....+.++++|.++++.
T Consensus       123 -~~~fD~V~lDP-~---Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        123 -ERKFDVVDIDP-F---GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             -cCCCCEEEECC-C---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence             45799999854 2   445678888667789999999983

>PRK00811 spermidine synthase; Provisional

Probab=99.00  E-value=6.3e-09  Score=86.61  Aligned_cols=128  Identities=14%  Similarity=0.030  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.++||+||||.|..+..+++. + .+|+++|+ +++++.+++++.......        ....++++...|.....  .
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~--------~~d~rv~v~~~Da~~~l--~  145 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA--------YDDPRVELVIGDGIKFV--A  145 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc--------ccCCceEEEECchHHHH--h
Confidence            4579999999999999888876 4 37999999 669999999876432100        01347788775543321  1


Q ss_pred             ccCCCccEEEEe--ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCC
Q 027530          141 AVAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       141 ~~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~  201 (222)
                      ...++||+|++.  ++.....  .-..+++.+++.|+|+|++++....  ..........+.+++-|
T Consensus       146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F  212 (283)
T PRK00811        146 ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF  212 (283)
T ss_pred             hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence            235789999974  2221111  1256889999999999987764221  12223344444444444

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.97  E-value=6.1e-09  Score=91.60  Aligned_cols=100  Identities=18%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +++.|||+|||+|.++..+++.+      .+|++++. +.++..+++.+..|+.            .++|++++.|..+.
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w------------~~~V~vi~~d~r~v  253 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW------------GDKVTVIHGDMREV  253 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT------------TTTEEEEES-TTTS
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC------------CCeEEEEeCcccCC
Confidence            57889999999999998888775      37999998 5577777777677774            46899999777766


Q ss_pred             ccccccCCCccEEEEecc--ccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          137 DHIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~--~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      ..    +.++|+||+--+  +-..+.....+....+.|+|+|+++
T Consensus       254 ~l----pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  254 EL----PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             CH----SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             CC----CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            43    459999997422  2234466778888999999998765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.97  E-value=2.3e-09  Score=84.48  Aligned_cols=98  Identities=20%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.+|+|+.||.|..++.+|+  .+..|++.|. +++++.+++|+++|++.            ..+.+...|..+...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~------------~~i~~~~~D~~~~~~  166 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE------------NRIEVINGDAREFLP  166 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T------------TTEEEEES-GGG---
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC------------CeEEEEcCCHHHhcC
Confidence            34678999999999999999998  5668999999 78999999999999864            578888877654322


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                          ...||.|+++.+-    ....++..+..+++++|.+.
T Consensus       167 ----~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 ----EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred             ----ccccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence                6789999987654    33468888888899888653

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.97  E-value=7.5e-09  Score=82.29  Aligned_cols=128  Identities=17%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEE-eecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVE-LDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~  138 (222)
                      ..++|||||++.|.-++.+|..   ..++|.+|. ++..+.|++|+++.++.            +++.... +|+.+...
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~------------~~i~~~~~gdal~~l~  126 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD------------DRIELLLGGDALDVLS  126 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc------------ceEEEEecCcHHHHHH
Confidence            5689999999999999988864   247999999 67999999999998864            4566666 46554322


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----h--------H--HHHHHHHHhc--CCe
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----S--------V--HEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----~--------~--~~~f~~~~~~--~~~  202 (222)
                      . ...++||+|+.-   ......+.++..+.++|+|||.+++-.-....    .        .  ...|.....+  +++
T Consensus       127 ~-~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (219)
T COG4122         127 R-LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD  202 (219)
T ss_pred             h-ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce
Confidence            1 346899999854   23567788999999999999998764432221    0        1  3556666643  566


Q ss_pred             EEEec
Q 027530          203 VKLVP  207 (222)
Q Consensus       203 v~~v~  207 (222)
                      ...+|
T Consensus       203 t~~lP  207 (219)
T COG4122         203 TVLLP  207 (219)
T ss_pred             eEEEe
Confidence            66666

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=2e-08  Score=80.65  Aligned_cols=103  Identities=16%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||.|.|+|.++.++|.. |.  +|+..|+ ++..+.|++|++.-++.            ++++....|..+.
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~------------d~v~~~~~Dv~~~  158 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG------------DRVTLKLGDVREG  158 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc------------cceEEEecccccc
Confidence            5678999999999999999999964 43  7999999 77999999999987643            3466666555443


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..    ...||.|+.-     .......+..++..|+|||.+.+-.+.
T Consensus       159 ~~----~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         159 ID----EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             cc----ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            32    3489999864     456788999999999999987665543

>PRK04148 hypothetical protein; Provisional

Probab=98.96  E-value=6.1e-09  Score=76.46  Aligned_cols=97  Identities=20%  Similarity=0.201  Sum_probs=65.6

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      .+++|+.++.       ...++++|||+|||+|. ++..+++.|.+|+++|. +++++.++++    +            
T Consensus         3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------   59 (134)
T PRK04148          3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------   59 (134)
T ss_pred             HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence            4677877663       33466899999999997 99999999999999999 5576666554    2            


Q ss_pred             CCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530          122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL  171 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~  171 (222)
                          +.+...|+.+...  ..-..+|+|.+.-+-  .+..+++++..+++
T Consensus        60 ----~~~v~dDlf~p~~--~~y~~a~liysirpp--~el~~~~~~la~~~  101 (134)
T PRK04148         60 ----LNAFVDDLFNPNL--EIYKNAKLIYSIRPP--RDLQPFILELAKKI  101 (134)
T ss_pred             ----CeEEECcCCCCCH--HHHhcCCEEEEeCCC--HHHHHHHHHHHHHc
Confidence                3556656554322  123578888887664  44444555544444

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.92  E-value=7.8e-09  Score=84.98  Aligned_cols=77  Identities=19%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++...               .++++...|..+..  
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---------------~~v~ii~~D~~~~~--   88 (258)
T PRK14896         26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---------------GNVEIIEGDALKVD--   88 (258)
T ss_pred             CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---------------CCEEEEEeccccCC--
Confidence            3446789999999999999999999889999999 55999998887531               36788887765432  


Q ss_pred             cccCCCccEEEEeccccC
Q 027530          140 KAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~  157 (222)
                         -..||.|++|.+++.
T Consensus        89 ---~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         89 ---LPEFNKVVSNLPYQI  103 (258)
T ss_pred             ---chhceEEEEcCCccc
Confidence               235899999988654

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.92  E-value=3.8e-09  Score=84.88  Aligned_cols=112  Identities=18%  Similarity=0.125  Sum_probs=73.0

Q ss_pred             cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHHHHhhcccc
Q 027530           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS  113 (222)
Q Consensus        37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~  113 (222)
                      .++.++..|.+.+...       ...++|++|||+|||+|.++..+++.|+ +|+++|. ++++.. ++++.+-..    
T Consensus        55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~----  123 (228)
T TIGR00478        55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKV----  123 (228)
T ss_pred             hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeE----
Confidence            5677888899888765       4467899999999999999999999987 6999998 445553 333221000    


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                               .+...+...+|.+..   ..-..+|+++.+-.        .++..+..+|+| |.+++
T Consensus       124 ---------~~~~ni~~~~~~~~~---~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       124 ---------LERTNIRYVTPADIF---PDFATFDVSFISLI--------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             ---------eecCCcccCCHhHcC---CCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence                     011122244555442   11236777776533        257788888888 65554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.92  E-value=8.7e-09  Score=81.05  Aligned_cols=89  Identities=17%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++++|||+|||+|..+..+++. +..++++|. +++++.+++    +                ++++...+..+.. .+.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----------------~~~~~~~d~~~~l-~~~   71 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----------------GVNVIQGDLDEGL-EAF   71 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----------------CCeEEEEEhhhcc-ccc
Confidence            4579999999999999888754 557999998 557776643    1                2345555543311 112


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcC
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG  173 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~  173 (222)
                      .+++||+|+++.++++..+...+++.+.+.++
T Consensus        72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            35789999999999988888888888777655

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.91  E-value=6.9e-09  Score=85.91  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++..                .++++...|+.+...  
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----------------~~v~~i~~D~~~~~~--  101 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----------------DNLTIIEGDALKVDL--  101 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----------------CceEEEEChhhcCCH--
Confidence            346789999999999999999999889999999 5699999887641                367888877665421  


Q ss_pred             ccCCCccEEEEeccccC
Q 027530          141 AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~  157 (222)
                       .+..+|.|++|.+++.
T Consensus       102 -~~~~~~~vv~NlPY~i  117 (272)
T PRK00274        102 -SELQPLKVVANLPYNI  117 (272)
T ss_pred             -HHcCcceEEEeCCccc
Confidence             1112689999988644

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.91  E-value=1.9e-08  Score=81.79  Aligned_cols=96  Identities=19%  Similarity=0.136  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +.++|+|||+|.|..++.+++..  .+++..|.+++++.+++     .              +++++..+|+-+.     
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-----~--------------~rv~~~~gd~f~~-----  155 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-----A--------------DRVEFVPGDFFDP-----  155 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-----T--------------TTEEEEES-TTTC-----
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-----c--------------cccccccccHHhh-----
Confidence            44689999999999999999874  47999999999888887     1              4889999776521     


Q ss_pred             cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCC--eEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPK--TTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~--g~~~l~~~~  184 (222)
                      .+. +|+++...++++.+  ....+++.+.+.|+||  |+++|....
T Consensus       156 ~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~  201 (241)
T PF00891_consen  156 LPV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV  201 (241)
T ss_dssp             CSS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred             hcc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence            133 99999999998754  4566899999999998  999998876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00417 speE spermidine synthase

Probab=98.90  E-value=2.6e-08  Score=82.40  Aligned_cols=106  Identities=13%  Similarity=-0.008  Sum_probs=71.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++||+||||+|..+..+++..  .+|+++|+ +++++.+++++.......         ...++++...|....  ...
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~---------~~~~v~i~~~D~~~~--l~~  141 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY---------DDPRVDLQIDDGFKF--LAD  141 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc---------cCCceEEEECchHHH--HHh
Confidence            4599999999999888777664  37999999 569999999875432110         123566665332211  111


Q ss_pred             cCCCccEEEEeccccCc--cC--HHHHHHHHHHhcCCCeEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAE--HL--LEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~--~~--~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ..++||+|++.......  ..  ...+++.+.++|+|||++++.
T Consensus       142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            25689999975432111  11  357889999999999998875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=1.9e-08  Score=84.07  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++++..++.            ..++++...|+.+..  
T Consensus        33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~------------~~~v~ii~~Dal~~~--   98 (294)
T PTZ00338         33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL------------ASKLEVIEGDALKTE--   98 (294)
T ss_pred             CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC------------CCcEEEEECCHhhhc--
Confidence            3446789999999999999999999889999999 5699999999876542            247888886665432  


Q ss_pred             cccCCCccEEEEeccccCc
Q 027530          140 KAVAPPFDYIIGTDVVYAE  158 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~  158 (222)
                         ...||.|++|.+++..
T Consensus        99 ---~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         99 ---FPYFDVCVANVPYQIS  114 (294)
T ss_pred             ---ccccCEEEecCCcccC
Confidence               2468999998877654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=1.2e-08  Score=81.02  Aligned_cols=123  Identities=14%  Similarity=0.289  Sum_probs=78.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHh-CCE-EEEecch-hhHHHHHHHHHHhhccccccC------------CCCC----
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQI-EVLPLLKRNVEWNTSRISQMN------------PGSG----  120 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~-g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~------------~~~~----  120 (222)
                      .+.+.++.+|||||-+|.+++.+|+. |++ |.++|++ ..+..|++|++.-........            |.+.    
T Consensus        54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a  133 (288)
T KOG2899|consen   54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA  133 (288)
T ss_pred             ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence            46788899999999999999999975 664 9999995 489999998764221100000            0000    


Q ss_pred             ------CCCCceEEEEeec--CCCccccccCCCccEEEEeccccC------ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          121 ------NLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       121 ------~~~~~v~~~~~d~--~~~~~~~~~~~~fD~Ii~~d~~y~------~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                            ....++.+.....  ...+-+....+.||+|+|-.+.-|      ++-+..+++.+.++|.|||++++.-
T Consensus       134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                  0111111111000  111112234678999998877654      3447889999999999999988854

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.88  E-value=2e-08  Score=86.47  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.+|||+.||+|..|+.++..  |+ +|++.|. +++++.+++|++.|+.             .++.+.+.|.....  .
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-------------~~~~v~~~Da~~~l--~  109 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-------------ENIEVPNEDAANVL--R  109 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CcEEEEchhHHHHH--H
Confidence            358999999999999999987  55 6999999 7799999999999974             25667765543321  1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ....+||+|.. |+ |.  ...+++..+.+.++++|.++++.
T Consensus       110 ~~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       110 YRNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             HhCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence            12357999987 55 43  44579999999999999999874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK03612 spermidine synthase; Provisional

Probab=98.88  E-value=2.4e-08  Score=89.76  Aligned_cols=132  Identities=14%  Similarity=0.052  Sum_probs=83.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.++|||||||+|..+..+++..  .+|+++|+ +++++.+++|...+......      -..+++++...|-.+.  ..
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~------~~dprv~vi~~Da~~~--l~  368 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGA------LDDPRVTVVNDDAFNW--LR  368 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccc------cCCCceEEEEChHHHH--HH
Confidence            45799999999999998888775  47999999 67999999864322211000      0124677777554322  12


Q ss_pred             ccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhc-CCeE
Q 027530          141 AVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNV  203 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~-~~~v  203 (222)
                      ...++||+|+++.+-....     .-.++++.++++|+|||.+++....  ..........+.+++ +|.+
T Consensus       369 ~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v  439 (521)
T PRK03612        369 KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT  439 (521)
T ss_pred             hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence            2346899999863321111     1235889999999999998875421  112334455555554 4733

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.84  E-value=9.6e-08  Score=77.60  Aligned_cols=123  Identities=16%  Similarity=0.125  Sum_probs=82.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++|||-|.|+|.+++++++. |  .+|+..|. ++..+.|++|++..++.            .++++...|+.+.
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~------------~~v~~~~~Dv~~~  104 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD------------DNVTVHHRDVCEE  104 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC------------TTEEEEES-GGCG
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC------------CCceeEecceecc
Confidence            5678999999999999999999975 3  37999999 77999999999998853            5899999887542


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhc-CCCeEEEEEEEEcChhHHHHHHHHHh-cCCe
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  202 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l-~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~  202 (222)
                      -........+|.|+.-     .......+..+.+.| ++||++..-.+. -.. .....+.++ .+|.
T Consensus       105 g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~-ieQ-v~~~~~~L~~~gf~  165 (247)
T PF08704_consen  105 GFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC-IEQ-VQKTVEALREHGFT  165 (247)
T ss_dssp             --STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS-HHH-HHHHHHHHHHTTEE
T ss_pred             cccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC-HHH-HHHHHHHHHHCCCe
Confidence            2111224689999864     335566788888999 788876554332 222 344455553 4653

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.84  E-value=5.5e-08  Score=77.84  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=98.9

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHH-HHHHHhhccccccCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLK-RNVEWNTSRISQMNPG  118 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~  118 (222)
                      ....|.+|+.+.        ...++.+||..|||.|.-.+.+|.+|.+|+|+|+++ +++.+. +|.......  .....
T Consensus        22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~--~~~~~   91 (218)
T PF05724_consen   22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVT--SVGGF   91 (218)
T ss_dssp             STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECT--TCTTE
T ss_pred             CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcc--cccce
Confidence            378888998762        233557999999999999999999999999999954 888773 222111100  00000


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEE-----cC-h---
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEI-----RS-T---  187 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~-----r~-~---  187 (222)
                      ......+|++.+.|.-+...  ...++||+|+=..++.  ..+......+.+.++|+|+|.+++..-.     +. +   
T Consensus        92 ~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~  169 (218)
T PF05724_consen   92 KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS  169 (218)
T ss_dssp             EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred             eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence            00123467888866544321  1225899998655553  3567888999999999999995443321     11 1   


Q ss_pred             hHHHHHHHHHhcCCeEEEecC
Q 027530          188 SVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       188 ~~~~~f~~~~~~~~~v~~v~~  208 (222)
                      -..+++.+.+..+|+++.+..
T Consensus       170 v~~~ev~~l~~~~f~i~~l~~  190 (218)
T PF05724_consen  170 VTEEEVRELFGPGFEIEELEE  190 (218)
T ss_dssp             --HHHHHHHHTTTEEEEEEEE
T ss_pred             CCHHHHHHHhcCCcEEEEEec
Confidence            124556666678888876665

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.83  E-value=7.7e-08  Score=80.86  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      .+.||+.+-+-       ....+|..|||=-||||-.-+.+...|++|+|+|+++ |++-++.|++.-++.         
T Consensus       182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~---------  245 (347)
T COG1041         182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE---------  245 (347)
T ss_pred             CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC---------
Confidence            35667666543       3566899999999999999999999999999999955 999999999977632         


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCc----------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~----------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                          ...+..  ..+...++..+.++|.|+.-+ .|-.          .....+++.+.+.|++||.+.++.+
T Consensus       246 ----~~~~~~--~~Da~~lpl~~~~vdaIatDP-PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         246 ----DYPVLK--VLDATNLPLRDNSVDAIATDP-PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ----ceeEEE--ecccccCCCCCCccceEEecC-CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence                222222  123333334455799998654 4542          2367788999999999999988877

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.82  E-value=6e-08  Score=78.36  Aligned_cols=95  Identities=24%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .+..++||||+|.|-++..++..-.+|++|+.+. |...+    ++.+..               -....+|.+.     
T Consensus        93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL----~~kg~~---------------vl~~~~w~~~-----  148 (265)
T PF05219_consen   93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRL----SKKGFT---------------VLDIDDWQQT-----  148 (265)
T ss_pred             ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHH----HhCCCe---------------EEehhhhhcc-----
Confidence            4567899999999999999999888999999865 54433    322211               1233345532     


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       +.+||+|.+-.++=.......+++.+++.|+|+|+++++.
T Consensus       149 -~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  149 -DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             -CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence             4689999999999777888899999999999999999864

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.82  E-value=1.8e-08  Score=80.14  Aligned_cols=113  Identities=16%  Similarity=0.217  Sum_probs=79.1

Q ss_pred             eEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-ccc
Q 027530           67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-HIK  140 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~  140 (222)
                      +|||+|||.|-....+.+-.    -+|.+.|. +.+++..++|...+.              .++.....|..... ..+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--------------~~~~afv~Dlt~~~~~~~  139 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--------------SRVEAFVWDLTSPSLKEP  139 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--------------hhhcccceeccchhccCC
Confidence            79999999998888777653    36999998 679999999887654              23333333333332 223


Q ss_pred             ccCCCccEEEEecccc--CccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHH
Q 027530          141 AVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM  193 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f  193 (222)
                      ...+++|+|++-=++-  +++.....++.+.++|||||.+++-+..|.......|
T Consensus       140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF  194 (264)
T KOG2361|consen  140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF  194 (264)
T ss_pred             CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence            3467899987654442  2455677899999999999999998776665433333

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.80  E-value=5.2e-08  Score=79.29  Aligned_cols=103  Identities=16%  Similarity=0.040  Sum_probs=77.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .-++|||||+++|+-++.+|..   +++|+.+|. ++..+.|++|++..++.            .+|++..++..+....
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~------------~~I~~~~G~a~e~L~~  146 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA------------HKIDFREGPALPVLDQ  146 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeccHHHHHHH
Confidence            4479999999999999988864   458999998 66889999999988753            6888888665432111


Q ss_pred             -cc---cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          140 -KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       140 -~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       ..   ..++||+|+.-   .+.......+..+.++|+|||.+++-
T Consensus       147 l~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        147 MIEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HHhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence             10   13689999864   22556677888888999999997653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.79  E-value=1.2e-08  Score=81.19  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP  145 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (222)
                      .++|+|||+|..++.+|..-.+|++||. +.||+.+++.-...-..            ...+...   .+...+...+++
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~------------t~~~ms~---~~~v~L~g~e~S  100 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCH------------TPSTMSS---DEMVDLLGGEES  100 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccccc------------CCccccc---cccccccCCCcc
Confidence            7999999999888999988678999999 55999877633211110            0001111   111122223789


Q ss_pred             ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          146 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       146 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      .|+|+++.++|+.+ .+.+.+.+.++|++.|-++.
T Consensus       101 VDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~ia  134 (261)
T KOG3010|consen  101 VDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIA  134 (261)
T ss_pred             eeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEE
Confidence            99999999997654 68999999999997774433

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.78  E-value=5.2e-08  Score=75.73  Aligned_cols=118  Identities=17%  Similarity=0.165  Sum_probs=77.5

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-----------EEEecc-hhhHHHHHHHHHHhhc
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      ..+|.-|..-       ....++..|||--||+|.+-+.++..+..           +++.|+ +++++.+++|++..+.
T Consensus        14 ~~lA~~ll~l-------a~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~   86 (179)
T PF01170_consen   14 PTLAAALLNL-------AGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV   86 (179)
T ss_dssp             HHHHHHHHHH-------TT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHH-------hCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence            3555555443       23446789999999999999998876543           679999 6699999999998774


Q ss_pred             cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--------~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .            ..+.+.+.|..+.   +...+.+|+||+++++-..        .....+++.+.+++++ ..+++..
T Consensus        87 ~------------~~i~~~~~D~~~l---~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   87 E------------DYIDFIQWDAREL---PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             C------------GGEEEEE--GGGG---GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             C------------CceEEEecchhhc---ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            3            4677777555433   3346789999999887542        2345577777888888 4444544


Q ss_pred             E
Q 027530          183 E  183 (222)
Q Consensus       183 ~  183 (222)
                      .
T Consensus       151 ~  151 (179)
T PF01170_consen  151 S  151 (179)
T ss_dssp             S
T ss_pred             C
Confidence            3

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.78  E-value=6.9e-08  Score=75.18  Aligned_cols=121  Identities=21%  Similarity=0.291  Sum_probs=79.6

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      +++|+|+|.|++|+.+|-.-.  +|+++|. ..=+..++.-+..-++             .++++.+....+    ....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-------------~nv~v~~~R~E~----~~~~  113 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-------------SNVEVINGRAEE----PEYR  113 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--------------SSEEEEES-HHH----TTTT
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-------------CCEEEEEeeecc----cccC
Confidence            799999999999999997754  6999997 4455555555554443             368888855543    2346


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                      .+||+|++--+-    .+..++..+..+++++|.+++.-......-.......++ .+.....++.
T Consensus       114 ~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~  175 (184)
T PF02527_consen  114 ESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE  175 (184)
T ss_dssp             T-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred             CCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence            899999987554    678899999999999998766433333322333444443 2455555544

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.73  E-value=9.5e-08  Score=80.72  Aligned_cols=106  Identities=20%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..|.+|||+-||.|.+++.+|++|+. |+++|+ +++++.+++|+++|++.            ..+....+|.....   
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~------------~~v~~i~gD~rev~---  251 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE------------GRVEPILGDAREVA---  251 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc------------ceeeEEeccHHHhh---
Confidence            35899999999999999999999986 999999 88999999999999964            34778886654332   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      .....+|-|+++-+.    ....++....+.++++|.+..-...+..
T Consensus       252 ~~~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         252 PELGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             hccccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence            222789999988554    3345777777778888877665444443

>PRK01581 speE spermidine synthase; Validated

Probab=98.70  E-value=9.3e-08  Score=81.32  Aligned_cols=105  Identities=19%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHH---HhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++||+||||.|.....+++..  .+|+++|+ +++++.|++...   .+...         -...++++...|..+. 
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~---------~~DpRV~vvi~Da~~f-  219 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA---------FFDNRVNVHVCDAKEF-  219 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc---------CCCCceEEEECcHHHH-
Confidence            34699999999999877777764  47999999 669999996321   11110         0135777777554432 


Q ss_pred             cccccCCCccEEEEeccccCcc------C-HHHHHHHHHHhcCCCeEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEH------L-LEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~------~-~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       +....++||+|++. +. ...      . -..+++.+++.|+|||++++.
T Consensus       220 -L~~~~~~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        220 -LSSPSSLYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             -HHhcCCCccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             12235689999975 21 111      1 256889999999999987664

>PLN02366 spermidine synthase

Probab=98.69  E-value=3.2e-07  Score=77.13  Aligned_cols=127  Identities=14%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.++||+||||.|.....+++..  .+|+.+|+ +++++.+++.+......         -...++++...|-...-. .
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~---------~~dpRv~vi~~Da~~~l~-~  160 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG---------FDDPRVNLHIGDGVEFLK-N  160 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc---------cCCCceEEEEChHHHHHh-h
Confidence            45799999999999988888763  37999999 55999999987542111         013578888755322111 1


Q ss_pred             ccCCCccEEEEeccccC--cc---CHHHHHHHHHHhcCCCeEEEEEEE--EcChhHHHHHHHHHhcCC
Q 027530          141 AVAPPFDYIIGTDVVYA--EH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~--~~---~~~~ll~~~~~~l~~~g~~~l~~~--~r~~~~~~~f~~~~~~~~  201 (222)
                      ...++||+|++. ..-.  ..   .-..+++.++++|+|+|++.+...  .........+.+.++..|
T Consensus       161 ~~~~~yDvIi~D-~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        161 APEGTYDAIIVD-SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             ccCCCCCEEEEc-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence            124689999973 2211  11   134689999999999999765221  122333455556666555

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.69  E-value=2.5e-07  Score=75.80  Aligned_cols=75  Identities=19%  Similarity=0.242  Sum_probs=56.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++..               ..++++...|..+...  
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---------------~~~v~v~~~D~~~~~~--   89 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---------------YERLEVIEGDALKVDL--   89 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---------------CCcEEEEECchhcCCh--
Confidence            446789999999999999999999989999999 5588888877642               1367777766544321  


Q ss_pred             ccCCCcc---EEEEecccc
Q 027530          141 AVAPPFD---YIIGTDVVY  156 (222)
Q Consensus       141 ~~~~~fD---~Ii~~d~~y  156 (222)
                         ..||   +|+++.+++
T Consensus        90 ---~~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        90 ---PDFPKQLKVVSNLPYN  105 (253)
T ss_pred             ---hHcCCcceEEEcCChh
Confidence               1455   888887653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=2e-07  Score=81.48  Aligned_cols=125  Identities=12%  Similarity=0.085  Sum_probs=94.1

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      .+.+|-.++.+++       ....++.+||+.||||+.|+.+|+...+|+++++ +++++-|+.|+..|++.        
T Consensus       367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis--------  431 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS--------  431 (534)
T ss_pred             HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc--------
Confidence            4788888888873       4556789999999999999999999889999998 78999999999999964        


Q ss_pred             CCCCCceEEEEeecCCCccccccC--CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                           +.+++.+...+........  ..-+++.-.|+-- ......+++.+...-++.-.+|++...+.
T Consensus       432 -----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  432 -----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             -----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence                 7888875333332211111  2344443333332 66778899999998889999999987764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.65  E-value=1e-06  Score=82.00  Aligned_cols=151  Identities=13%  Similarity=0.018  Sum_probs=98.9

Q ss_pred             eEEEeEcCeEEEEeeCCCCcccccc-------ccchHHHHHHHHhhhccCCCCCCCC-CCCCeEEEeCCCccHHHHHHHH
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTT-------VWDASVVFVKYLEKNCRKGRFCPSK-LKGKRVIELGAGCGVAGFGMAL   84 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~-------~W~~~~~la~~l~~~~~~~~~~~~~-~~~~~vLelGcG~G~~~i~la~   84 (222)
                      .+.+.+.+...++.-+..+...--+       .-|-...||.-+...       ... ..+..++|-+||+|.+.|.+|.
T Consensus       138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~-------a~w~~~~~~l~DP~CGSGTilIEAa~  210 (702)
T PRK11783        138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLR-------SGWPQEGTPLLDPMCGSGTLLIEAAM  210 (702)
T ss_pred             EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHH-------cCCCCCCCeEEccCCCccHHHHHHHH
Confidence            5666677888888777643322111       222334666655543       222 3567899999999999998875


Q ss_pred             hC--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           85 LG--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        85 ~g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      .+                                            .+++|+|+ +++++.+++|+..+++.        
T Consensus       211 ~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~--------  282 (702)
T PRK11783        211 MAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVA--------  282 (702)
T ss_pred             HHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCC--------
Confidence            31                                            25899999 66999999999998853        


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc----cCHHHHHHHHHHhcC---CCeEEEEEEE
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILLGYE  183 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~---~~g~~~l~~~  183 (222)
                          ..+.+.+.|+.+.... ...++||+|++|+++...    .....+.+.+.+.++   +|+.+++...
T Consensus       283 ----~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        283 ----ELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             ----cceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence                4678888777654221 123579999999887542    223445444444443   7888777654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=3.3e-07  Score=72.78  Aligned_cols=126  Identities=16%  Similarity=0.123  Sum_probs=81.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +++++|||+|.|++|+.+|....  +||.+|. ..=+..++.-...-++             +++++.+...++...   
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-------------~nv~i~~~RaE~~~~---  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-------------ENVEIVHGRAEEFGQ---  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-------------CCeEEehhhHhhccc---
Confidence            68999999999999999886543  5999996 4455555554444443             367887755444321   


Q ss_pred             cCCC-ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027530          142 VAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  211 (222)
Q Consensus       142 ~~~~-fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~~~  211 (222)
                       ..+ ||+|.+--+    .....++..+..++++||.++........+...+..... ..++.++.+..-..
T Consensus       132 -~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~  198 (215)
T COG0357         132 -EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTV  198 (215)
T ss_pred             -ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeec
Confidence             123 999998654    367889999999999999865433223333233443333 33566655544433

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.62  E-value=9.1e-08  Score=72.75  Aligned_cols=77  Identities=21%  Similarity=0.057  Sum_probs=55.2

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP  145 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (222)
                      .|+|+.||.|-.++.+|+.+.+|+++|+ +..++.++.|++.-++.            .+|.++..||.+..........
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~------------~~I~~i~gD~~~~~~~~~~~~~   69 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA------------DNIDFICGDFFELLKRLKSNKI   69 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G------------GGEEEEES-HHHHGGGB-----
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCCHHHHHhhcccccc
Confidence            6999999999999999999999999999 66999999999988753            6899999888764322111222


Q ss_pred             ccEEEEeccc
Q 027530          146 FDYIIGTDVV  155 (222)
Q Consensus       146 fD~Ii~~d~~  155 (222)
                      ||+|+++++-
T Consensus        70 ~D~vFlSPPW   79 (163)
T PF09445_consen   70 FDVVFLSPPW   79 (163)
T ss_dssp             -SEEEE---B
T ss_pred             ccEEEECCCC
Confidence            8999988754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.61  E-value=3.4e-07  Score=72.13  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=80.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ..+||||||.|-..+.+|+...  .++|+|. ...+..+.+.+...++             .|+.+...|.......-..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-------------~Nv~~~~~da~~~l~~~~~   85 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-------------KNVRFLRGDARELLRRLFP   85 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-------------SSEEEEES-CTTHHHHHST
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-------------cceEEEEccHHHHHhhccc
Confidence            3799999999999999998754  6999998 6688888777777664             5899998776553222233


Q ss_pred             CCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530          143 APPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  199 (222)
Q Consensus       143 ~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~  199 (222)
                      ++++|-|..+  |+-....      .-+.++..+.++|+|||.+++.+-...  ..+..++.+..
T Consensus        86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~--y~~~~~~~~~~  148 (195)
T PF02390_consen   86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE--YAEWMLEQFEE  148 (195)
T ss_dssp             TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH--HHHHHHHHHHH
T ss_pred             CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence            5788887654  4422111      246799999999999999988765432  23344444443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.61  E-value=2.3e-07  Score=73.52  Aligned_cols=130  Identities=19%  Similarity=0.188  Sum_probs=89.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+|.+|||-+.|.|..++.+++.|| +|+.++. +.++++++-|==..++           ....++++.+|..+.- ..
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l-----------~~~~i~iilGD~~e~V-~~  200 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL-----------FEIAIKIILGDAYEVV-KD  200 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc-----------cccccEEecccHHHHH-hc
Confidence            4789999999999999999999999 7999998 6688887765321111           1124666664433221 23


Q ss_pred             ccCCCccEEEEeccccCcc---CHHHHHHHHHHhcCCCeEEEE--EEEE---cChhHHHHHHHHHh-cCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILL--GYEI---RSTSVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~---~~~~ll~~~~~~l~~~g~~~l--~~~~---r~~~~~~~f~~~~~-~~~~v~  204 (222)
                      +.+.+||+||-.++-+...   .-..|.+.+.++|+|||.++-  ..+.   |..+......+.++ -+|.+.
T Consensus       201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v  273 (287)
T COG2521         201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV  273 (287)
T ss_pred             CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence            4578899999888876533   246699999999999998753  3332   33445555666664 488743

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.60  E-value=3.8e-07  Score=69.61  Aligned_cols=84  Identities=12%  Similarity=-0.011  Sum_probs=63.4

Q ss_pred             EEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHH
Q 027530           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTI  168 (222)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~  168 (222)
                      +|+|. ++|++.++++.......          ...++++...|..   .++..+++||+|+++.++.+..+...+++.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~----------~~~~i~~~~~d~~---~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS----------CYKCIEWIEGDAI---DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc----------CCCceEEEEechh---hCCCCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence            47998 56999998766532210          1236788886544   3445577899999999998888899999999


Q ss_pred             HHhcCCCeEEEEEEEEcC
Q 027530          169 FALSGPKTTILLGYEIRS  186 (222)
Q Consensus       169 ~~~l~~~g~~~l~~~~r~  186 (222)
                      +++|||||.+++......
T Consensus        68 ~rvLkpGG~l~i~d~~~~   85 (160)
T PLN02232         68 YRVLKPGSRVSILDFNKS   85 (160)
T ss_pred             HHHcCcCeEEEEEECCCC
Confidence            999999999988765443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.60  E-value=3.2e-07  Score=77.83  Aligned_cols=137  Identities=16%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcccccc
Q 027530           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (222)
Q Consensus        38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (222)
                      -|--+.++..|+...       ....++.+|||||||-|---.-....+. .++++|+ .+.++.|++............
T Consensus        43 NwvKs~LI~~~~~~~-------~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~  115 (331)
T PF03291_consen   43 NWVKSVLIQKYAKKV-------KQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK  115 (331)
T ss_dssp             HHHHHHHHHHHCHCC-------CCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred             HHHHHHHHHHHHHhh-------hccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence            577788888887533       1223778999999998764444454554 6999999 569999988763221100000


Q ss_pred             CCCCCCCCCceEEEEeecCCCcc---ccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          116 NPGSGNLLGSIQAVELDWGNEDH---IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       116 ~~~~~~~~~~v~~~~~d~~~~~~---~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..   ...-...+...|-.....   ......+||+|=+--.+|.    ......+++.+...|+|||.++.+.+.
T Consensus       116 ~~---~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  116 QY---RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TS---EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cc---cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            00   000122333322221110   1111358999987766654    344666999999999999999887764

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.57  E-value=5.7e-07  Score=70.60  Aligned_cols=106  Identities=17%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE--EEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc----
Q 027530           67 RVIELGAGCGVAGFGMALLGCN--VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI----  139 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~--v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----  139 (222)
                      +|||||||||-=+..+|+.-..  -.-+|.+ +.+..++..+...++..            -..-..+|.......    
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N------------v~~P~~lDv~~~~w~~~~~   95 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN------------VRPPLALDVSAPPWPWELP   95 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc------------cCCCeEeecCCCCCccccc
Confidence            6999999999999988887554  5578884 45566666666655430            111233443332111    


Q ss_pred             -cccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 -KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 -~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       ......||.|++..+++-  .+....+++...++|++||.+++-.+.
T Consensus        96 ~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen   96 APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence             123568999999999875  345677999999999999998876554

The function of this family is unknown.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.55  E-value=5.9e-07  Score=67.74  Aligned_cols=121  Identities=13%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhccc
Q 027530           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI  112 (222)
Q Consensus        37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (222)
                      .+=|+|..+|+-+.+.       -..-.|.-|||+|.|||.++-++...|.   .++++++ ++-...+.+...      
T Consensus        28 aI~PsSs~lA~~M~s~-------I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------   94 (194)
T COG3963          28 AILPSSSILARKMASV-------IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------   94 (194)
T ss_pred             eecCCcHHHHHHHHhc-------cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------
Confidence            4557788888887765       2455788999999999999999998876   4999998 666555544322      


Q ss_pred             cccCCCCCCCCCceEEEEeecCCCc--cccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530          113 SQMNPGSGNLLGSIQAVELDWGNED--HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       113 ~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                                  .+.++++|..+..  .....++.||.||++=++-+.+.  .-.+++.+...|.+||.++.-.
T Consensus        95 ------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963          95 ------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             ------------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence                        3345554443333  12234678999999977766444  3457888888899988876443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.1e-06  Score=68.56  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=72.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC---EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ...+|.+.||+|+|+|.++..++++ |+   .++++|. ++.++..++|++.-...-..   .+.-...++.+..   ++
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~---~~~~~~~~l~ivv---GD  152 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES---SSKLKRGELSIVV---GD  152 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh---hhhhccCceEEEe---CC
Confidence            3568899999999999999888854 33   3599997 99999999999865421000   0001123455555   33


Q ss_pred             CccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          136 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      -........+||.|.+.      .....+.+.+-..|+++|++++-
T Consensus       153 gr~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  153 GRKGYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             ccccCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEe
Confidence            33333456799999754      23345666666778888888774

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.49  E-value=5.4e-06  Score=70.78  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=104.1

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccccc-------hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~   85 (222)
                      .|.+.+.+..++|.-|.++...-.+-|.       --..||.-|..-       .....+..++|-=||+|.+.|.+|..
T Consensus       140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~  212 (381)
T COG0116         140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI  212 (381)
T ss_pred             EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence            3666778888888888765543333333       123455544433       34555678999999999999999988


Q ss_pred             CC-----------------------------------------EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCC
Q 027530           86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLL  123 (222)
Q Consensus        86 g~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (222)
                      +.                                         .+++.|+ +.+++.|+.|++..++.            
T Consensus       213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~------------  280 (381)
T COG0116         213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVG------------  280 (381)
T ss_pred             ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC------------
Confidence            74                                         2779999 66999999999999864            


Q ss_pred             CceEEEEeecCCCccccccCCCccEEEEeccccC----cc----CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          124 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       124 ~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~----~~----~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      +.|++.+.|..+....   -+.+|+||+|+++=.    ..    ....+.+++++.++.-++.+++..
T Consensus       281 d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         281 DLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             ceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            6889999777655432   268999999988622    11    234566667777777677666553

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.47  E-value=1.5e-06  Score=72.23  Aligned_cols=83  Identities=23%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             CCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecC-CC-cc
Q 027530           65 GKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWG-NE-DH  138 (222)
Q Consensus        65 ~~~vLelGcG~G-~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~-~~-~~  138 (222)
                      ..++||||+|.. +..+..++ .|-+++|||+ +.+++.|++|++.| .+            .++|++....=. .. ..
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L------------~~~I~l~~~~~~~~i~~~  170 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL------------ESRIELRKQKNPDNIFDG  170 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-------------TTTEEEEE--ST-SSTTT
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc------------ccceEEEEcCCccccchh
Confidence            468999999984 55666554 4778999999 56999999999999 64            367777653311 11 11


Q ss_pred             ccccCCCccEEEEeccccCcc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH  159 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~  159 (222)
                      .....+.||+.+|++++|...
T Consensus       171 i~~~~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  171 IIQPNERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             STT--S-EEEEEE-----SS-
T ss_pred             hhcccceeeEEecCCccccCh
Confidence            122346899999999999754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.45  E-value=1.6e-06  Score=69.64  Aligned_cols=107  Identities=12%  Similarity=0.001  Sum_probs=77.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ..+||||||.|-.-+.+|+...+  ++|+|+ ...+..+.+.+.+.++             .|+.+.+.|.......-..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l-------------~Nlri~~~DA~~~l~~~~~  116 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL-------------KNLRLLCGDAVEVLDYLIP  116 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC-------------CcEEEEcCCHHHHHHhcCC
Confidence            47999999999999999998774  999998 6677777777776653             2778887665544333334


Q ss_pred             CCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          143 APPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       143 ~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +++.|-|..+  |+=.-..      ..+.+++.+.+.|+|||.+++++-..
T Consensus       117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            5588887654  3321111      24679999999999999999987543

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.42  E-value=2.5e-05  Score=62.73  Aligned_cols=151  Identities=17%  Similarity=0.220  Sum_probs=90.6

Q ss_pred             ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchh-hHHHHHHHHHHh
Q 027530           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN  108 (222)
Q Consensus        32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~-~l~~~~~n~~~n  108 (222)
                      .+-+..+++++..=|.|+.++        .++.|++||=||=. =+.|+++|..  ..+|+.+|+++ +++..++.+++.
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~   90 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE   90 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence            455666777888888888876        67899999999844 4667766654  45799999965 999999999888


Q ss_pred             hccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEEEEEcCh
Q 027530          109 TSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLGYEIRST  187 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~~~~r~~  187 (222)
                      ++              .+++...|..+... ....++||+++. |+.|-.+.+.-++......|+.. +..|++...+..
T Consensus        91 gl--------------~i~~~~~DlR~~LP-~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~  154 (243)
T PF01861_consen   91 GL--------------PIEAVHYDLRDPLP-EELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA  154 (243)
T ss_dssp             T----------------EEEE---TTS----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-
T ss_pred             CC--------------ceEEEEecccccCC-HHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC
Confidence            74              47888878775432 223679999995 56677777888888888888754 488888877663


Q ss_pred             --hHHHHHHHHH-hcCCeEEEec
Q 027530          188 --SVHEQMLQMW-KSNFNVKLVP  207 (222)
Q Consensus       188 --~~~~~f~~~~-~~~~~v~~v~  207 (222)
                        ....++.+.+ ..++.++.+-
T Consensus       155 s~~~~~~~Q~~l~~~gl~i~dii  177 (243)
T PF01861_consen  155 SPDKWLEVQRFLLEMGLVITDII  177 (243)
T ss_dssp             -HHHHHHHHHHHHTS--EEEEEE
T ss_pred             cHHHHHHHHHHHHHCCcCHHHHH
Confidence              2233445544 4578776553

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.41  E-value=4.3e-06  Score=70.47  Aligned_cols=123  Identities=18%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH---------hCCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~---------~g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (222)
                      ..+++++....       ....+.+|+|-+||+|..-+.+.+         ...+++|.|+ +.++..++.|+..++.. 
T Consensus        32 ~~i~~l~~~~~-------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-  103 (311)
T PF02384_consen   32 REIVDLMVKLL-------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-  103 (311)
T ss_dssp             HHHHHHHHHHH-------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-
T ss_pred             HHHHHHHHhhh-------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-
Confidence            45555555442       234667899999999987777665         2447999999 56999999998877643 


Q ss_pred             cccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--c-------------------CHHHHHHHHHHh
Q 027530          113 SQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFAL  171 (222)
Q Consensus       113 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~-------------------~~~~ll~~~~~~  171 (222)
                                .....+...|.-..... ....+||+||+++|+-..  .                   .--.++..+.+.
T Consensus       104 ----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~  172 (311)
T PF02384_consen  104 ----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL  172 (311)
T ss_dssp             ----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred             ----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence                      12334555343221111 124689999999987432  0                   012377778888


Q ss_pred             cCCCeEEEEEEEE
Q 027530          172 SGPKTTILLGYEI  184 (222)
Q Consensus       172 l~~~g~~~l~~~~  184 (222)
                      |+++|++.+..+.
T Consensus       173 Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  173 LKPGGRAAIILPN  185 (311)
T ss_dssp             EEEEEEEEEEEEH
T ss_pred             cccccceeEEecc
Confidence            9999998777764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.36  E-value=7.1e-06  Score=64.43  Aligned_cols=126  Identities=13%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             cccchHH--HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhcccc
Q 027530           37 TVWDASV--VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (222)
Q Consensus        37 ~~W~~~~--~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (222)
                      ..||.-+  .+.+||...          ..+..|-|+|||-+.++..+ ..+.+|...|+ +.           |     
T Consensus        53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n-----  105 (219)
T PF05148_consen   53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N-----  105 (219)
T ss_dssp             CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred             hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence            3788665  466777543          23468999999999888443 24557999996 32           1     


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHH
Q 027530          114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM  193 (222)
Q Consensus       114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f  193 (222)
                                +  .+...|.   ...|..++..|++|.+=.+. ..++..+++...|+|||||.++|+...-.-.....|
T Consensus       106 ----------~--~Vtacdi---a~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F  169 (219)
T PF05148_consen  106 ----------P--RVTACDI---ANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQF  169 (219)
T ss_dssp             ----------T--TEEES-T---TS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred             ----------C--CEEEecC---ccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence                      1  1233333   23344578999999886553 567889999999999999999998875443446889


Q ss_pred             HHHHhc-CCeEEE
Q 027530          194 LQMWKS-NFNVKL  205 (222)
Q Consensus       194 ~~~~~~-~~~v~~  205 (222)
                      .+.++. ||.+..
T Consensus       170 ~~~~~~~GF~~~~  182 (219)
T PF05148_consen  170 IKALKKLGFKLKS  182 (219)
T ss_dssp             HHHHHCTTEEEEE
T ss_pred             HHHHHHCCCeEEe
Confidence            888864 887765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02823 spermine synthase

Probab=98.36  E-value=5.9e-06  Score=70.28  Aligned_cols=125  Identities=16%  Similarity=0.197  Sum_probs=79.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++||.||+|.|.....+.+..  .+|+++|+ +++++.+++.+..+...+         ...++++...|-...  +.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~---------~dprv~v~~~Da~~~--L~  171 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF---------CDKRLELIINDARAE--LE  171 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc---------cCCceEEEEChhHHH--Hh
Confidence            34689999999999888777753  36999999 679999999876543110         134777776443322  12


Q ss_pred             ccCCCccEEEEeccccCc-----c---CHHHHHH-HHHHhcCCCeEEEEEEEE----cChhHHHHHHHHHhcCC
Q 027530          141 AVAPPFDYIIGTDVVYAE-----H---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~-----~---~~~~ll~-~~~~~l~~~g~~~l~~~~----r~~~~~~~f~~~~~~~~  201 (222)
                      ...++||+|+.. +. ..     .   .-..+++ .+++.|+|+|++++-...    ..........+.++..|
T Consensus       172 ~~~~~yDvIi~D-~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF  243 (336)
T PLN02823        172 KRDEKFDVIIGD-LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF  243 (336)
T ss_pred             hCCCCccEEEec-CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence            235789999964 22 11     0   1235777 889999999987654321    12223344455555554

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.33  E-value=1.2e-05  Score=66.14  Aligned_cols=113  Identities=11%  Similarity=-0.002  Sum_probs=89.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      +.-+||||.||.|..-+-+....    .+|...|+ +..++..++-++.+++.            +.+++.+.|..+...
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~------------~i~~f~~~dAfd~~~  202 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE------------DIARFEQGDAFDRDS  202 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc------------cceEEEecCCCCHhH
Confidence            34589999999998877655442    25999999 55999999999988864            455999988777666


Q ss_pred             ccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                      .......++++|.+.++-..++   +...++-+..++.|||.++.+.++.++.
T Consensus       203 l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  203 LAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             hhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            6666788999999988754433   5667888888999999999988777775

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.31  E-value=3.5e-06  Score=69.90  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---c
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---H  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~  138 (222)
                      ++..+++||||-|---+-.-+.|. .++++|+.+ .++.|++..+.-.....       ...=.+.+...|-....   .
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-------~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-------KFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-------cccceeEEEEeccchhHHHHh
Confidence            557899999999976666667776 599999977 89999875542211000       00002344443322111   1


Q ss_pred             ccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+..+++||+|=+-=++|.    .....-+++.+.+.|+|||.++-+.+.
T Consensus       190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd  239 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD  239 (389)
T ss_pred             ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence            2233556999866544443    234566899999999999998766654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.28  E-value=4.3e-06  Score=69.53  Aligned_cols=116  Identities=22%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             CeEEEeCCCccH----HHHHHHHh------CCEEEEecc-hhhHHHHHHHHHH----hhccc-------ccc-CC-----
Q 027530           66 KRVIELGAGCGV----AGFGMALL------GCNVITTDQ-IEVLPLLKRNVEW----NTSRI-------SQM-NP-----  117 (222)
Q Consensus        66 ~~vLelGcG~G~----~~i~la~~------g~~v~~~D~-~~~l~~~~~n~~~----n~~~~-------~~~-~~-----  117 (222)
                      .+|+-.||.||-    +++.+...      ..+|+|||+ +.+++.|++.+-.    .+++.       ... .+     
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            689999999993    33444442      136999999 5599999876311    11110       000 00     


Q ss_pred             -CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          118 -GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       118 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .+......|.+..++..+..  ....+.||+|+|..++.+  .+....+++.+.+.|+|||.+++++.
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~--~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQ--WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             EEChHHHccCEEEcccCCCCC--CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence             00122346777776665421  112478999999777644  35578899999999999999888764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=1.4e-05  Score=65.24  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||||+|.|.++..+++.+.+|++++++ .+++.+++....               ..+++++..|.-..+..
T Consensus        27 ~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---------------~~n~~vi~~DaLk~d~~   91 (259)
T COG0030          27 NISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP---------------YDNLTVINGDALKFDFP   91 (259)
T ss_pred             CCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc---------------ccceEEEeCchhcCcch
Confidence            34457899999999999999999999999999995 588888776651               25788888666554321


Q ss_pred             cccCCCccEEEEeccccC
Q 027530          140 KAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~  157 (222)
                      ...  .++.|++|-++|-
T Consensus        92 ~l~--~~~~vVaNlPY~I  107 (259)
T COG0030          92 SLA--QPYKVVANLPYNI  107 (259)
T ss_pred             hhc--CCCEEEEcCCCcc
Confidence            111  7899999977654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.27  E-value=8.9e-07  Score=70.15  Aligned_cols=99  Identities=12%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ...++|||||.|.+.-.+...+. +++.+|.+ .|++.++..-. +.              -......   ++.+.+++.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--------------i~~~~~v---~DEE~Ldf~  134 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--------------IETSYFV---GDEEFLDFK  134 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--------------eEEEEEe---cchhccccc
Confidence            36899999999999887777776 69999985 48887765322 11              1222222   455566677


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ++++|+||++-.++|..+++..+..++..|||.|.++-+
T Consensus       135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            899999999999999999999999999999999987644

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.25  E-value=1.9e-05  Score=70.01  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||++||.|-=+..+|.+ +  ..|++.|+ +.-++.+++|+++-++.             ++.+...|-.... 
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-------------nv~v~~~D~~~~~-  177 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-------------NVALTHFDGRVFG-  177 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEeCchhhhh-
Confidence            47789999999999888777764 2  36999999 56899999999987743             5666654432211 


Q ss_pred             ccccCCCccEEEEecc------ccCcc----------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       ......||.|+.--+      +...+                .-..++....++|+|||+++.++
T Consensus       178 -~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        178 -AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             -hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence             122457999984211      11111                12557888888999999876543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.24  E-value=2.1e-05  Score=71.13  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC----------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD  132 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d  132 (222)
                      .+.+|||.|||+|.+.+.++...          .++++.|+ +.++..++.|+...+.             ..+.+...+
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-------------~~~~i~~~d   97 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-------------LEINVINFN   97 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-------------CCceeeecc
Confidence            45689999999999888777532          25899999 5699999999875541             012222211


Q ss_pred             cCCCc--cccccCCCccEEEEeccccC
Q 027530          133 WGNED--HIKAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       133 ~~~~~--~~~~~~~~fD~Ii~~d~~y~  157 (222)
                      .-...  ......++||+||+|+|+-.
T Consensus        98 ~l~~~~~~~~~~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987        98 SLSYVLLNIESYLDLFDIVITNPPYGR  124 (524)
T ss_pred             cccccccccccccCcccEEEeCCCccc
Confidence            11100  00112358999999999753

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.24  E-value=3.1e-06  Score=67.06  Aligned_cols=155  Identities=17%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la-~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .-++..++|||||.|-+-+.+| ..+.+ ++|+++ ++..+.++.+.+..........    ....++.+...|..+.+.
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g----~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG----KRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT----B---EEEEECS-TTTHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh----cccccceeeccCccccHh
Confidence            3457799999999998877666 44664 999998 6566666554433211100000    012356666655443221


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHH---HHHHHHhcCCeEEEecCCCCCccc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMW  215 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~---~f~~~~~~~~~v~~v~~~~~~~~~  215 (222)
                      ....-...|+|+++...|..+....+ ..+...||+|.+++ +...-.+....   .-...+..-+.++.....+..-.|
T Consensus       116 ~~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSW  193 (205)
T PF08123_consen  116 VKDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSW  193 (205)
T ss_dssp             HHHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTT
T ss_pred             HhhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceee
Confidence            11112468999999998876665555 44445578887764 44322221111   001111223556666655555566


Q ss_pred             CCCCCCC
Q 027530          216 GNPLGLY  222 (222)
Q Consensus       216 ~~~~~~~  222 (222)
                      ....|.|
T Consensus       194 t~~~~~y  200 (205)
T PF08123_consen  194 TSNSGPY  200 (205)
T ss_dssp             CSSB-EE
T ss_pred             cCCCcCE
Confidence            6555543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.22  E-value=3e-06  Score=66.74  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=67.5

Q ss_pred             CCCeEEEeCCCccH----HHHHHHHh-----C--CEEEEecc-hhhHHHHHHHHH-Hhhc---ccc-------ccCC---
Q 027530           64 KGKRVIELGAGCGV----AGFGMALL-----G--CNVITTDQ-IEVLPLLKRNVE-WNTS---RIS-------QMNP---  117 (222)
Q Consensus        64 ~~~~vLelGcG~G~----~~i~la~~-----g--~~v~~~D~-~~~l~~~~~n~~-~n~~---~~~-------~~~~---  117 (222)
                      +..+|+-.||++|-    +++.+...     +  .+|+|||+ +.+++.|++-+- .+.+   +..       ....   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34589999999993    33444441     1  37999999 559998876431 1111   000       0000   


Q ss_pred             -CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          118 -GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       118 -~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .+......|++..++..+   .....+.||+|+|-.++-.  ......+++.+.+.|+|||.++++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence             001233578888887776   2224678999999988743  45567799999999999999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.21  E-value=2.9e-05  Score=63.69  Aligned_cols=118  Identities=8%  Similarity=-0.099  Sum_probs=79.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      -++||=+|.|-|...-.+.+...+|+.+|+ +++++.+++-+......+         ..+++++..  |-    .....
T Consensus        73 pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~---------~DpRv~l~~--~~----~~~~~  137 (262)
T PRK00536         73 LKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVK---------NNKNFTHAK--QL----LDLDI  137 (262)
T ss_pred             CCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhh---------cCCCEEEee--hh----hhccC
Confidence            379999999999999999988669999999 559999998544322111         234666654  21    11123


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE--EcChhHHHHHHHHHhcCCe
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~--~r~~~~~~~f~~~~~~~~~  202 (222)
                      ++||+||. |.++.    ..+.+.+++.|+|+|.+.....  .-.........+.++..|.
T Consensus       138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~  193 (262)
T PRK00536        138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS  193 (262)
T ss_pred             CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence            68999995 54433    5788999999999998766332  2223334455555555665

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.19  E-value=4.3e-05  Score=60.59  Aligned_cols=116  Identities=16%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             EEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        68 vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      |.|+||-.|.+++.|.+.|.  +++++|+ +.-++.|++|++.+++.            .++++...|   ....-.+.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~------------~~i~~rlgd---GL~~l~~~e   65 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE------------DRIEVRLGD---GLEVLKPGE   65 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T------------TTEEEEE-S---GGGG--GGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc------------ccEEEEECC---cccccCCCC
Confidence            68999999999999999987  6999999 55999999999998753            578887733   222111233


Q ss_pred             CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      ..|.|+-+.+-  ...+..++......++....+++ .+.......+.|+.  ..+|.+
T Consensus        66 ~~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~--~~gf~I  119 (205)
T PF04816_consen   66 DVDTIVIAGMG--GELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLY--ENGFEI  119 (205)
T ss_dssp             ---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHH--HTTEEE
T ss_pred             CCCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHH--HCCCEE
Confidence            47888877665  44556666666666665555544 55555544555554  456655

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.18  E-value=3.5e-06  Score=69.27  Aligned_cols=120  Identities=16%  Similarity=0.131  Sum_probs=76.9

Q ss_pred             CCeEEEeCCCccH--HH--HHHHHhC-------CEEEEecch-hhHHHHHHHHHH--h---hcccc-------ccCCC--
Q 027530           65 GKRVIELGAGCGV--AG--FGMALLG-------CNVITTDQI-EVLPLLKRNVEW--N---TSRIS-------QMNPG--  118 (222)
Q Consensus        65 ~~~vLelGcG~G~--~~--i~la~~g-------~~v~~~D~~-~~l~~~~~n~~~--n---~~~~~-------~~~~~--  118 (222)
                      --+|+-.||+||-  .+  +.+....       .+|+|||++ .+++.|+.-+-.  +   +++..       +....  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            4689999999992  34  4444432       369999995 599998764321  1   11110       00000  


Q ss_pred             --CCCCCCceEEEEeecCCCccccccCCCccEEEEeccc-cC-ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          119 --SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       119 --~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~-y~-~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                        +......|.+..++..+...   ..+.||+|+|-+++ |. .+....+++.++..|+|||.+++.+...-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~  246 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP  246 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence              01233466777766554321   46789999998876 33 455677999999999999999998765443

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.17  E-value=2.6e-06  Score=65.56  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=71.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      ...+-|||+|+|.++..+|+..-+|++++. +...+.+++|+..++.             .+++++..|..+.+     -
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-------------~n~evv~gDA~~y~-----f   94 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-------------VNWEVVVGDARDYD-----F   94 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-------------cceEEEeccccccc-----c
Confidence            368999999999999999999778999998 7788999999987773             58888886554332     1


Q ss_pred             CCccEEEEe--ccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          144 PPFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       144 ~~fD~Ii~~--d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      ...|+|+|-  |...-.+-.-++++.+.+.|+..+.++
T Consensus        95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            467888753  222223444557777777888776654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.16  E-value=3.2e-06  Score=66.82  Aligned_cols=103  Identities=16%  Similarity=0.056  Sum_probs=67.6

Q ss_pred             CCCeEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~l-a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ...+.||.|||.|.++--+ .+...+|-.+|. +..++.|++.+....             ....++.+....++.   +
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-------------~~v~~~~~~gLQ~f~---P  118 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-------------PRVGEFYCVGLQDFT---P  118 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-------------CCEEEEEES-GGG------
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-------------CCcceEEecCHhhcc---C
Confidence            4468999999999999755 455557999998 668888887655321             122344443333222   2


Q ss_pred             cCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...+||+|..--|+-|  ..++-.+++.++..|+|+|.+++-.
T Consensus       119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            3569999999888765  3457779999999999999988744

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.09  E-value=2.8e-05  Score=63.20  Aligned_cols=99  Identities=20%  Similarity=0.278  Sum_probs=72.5

Q ss_pred             ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhc
Q 027530           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      .+.|.++=.-+.++.+.+..        ....+...|||+|-|||.++..+..+|++|++++. +.|+..+++..+-.. 
T Consensus        34 kd~GQHilkNp~v~~~I~~k--------a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp-  104 (315)
T KOG0820|consen   34 KDFGQHILKNPLVIDQIVEK--------ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP-  104 (315)
T ss_pred             cccchhhhcCHHHHHHHHhc--------cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC-
Confidence            45566655556666666554        34566779999999999999999999999999999 668888887665221 


Q ss_pred             cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccc
Q 027530          111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV  155 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~  155 (222)
                                 ....+++..+|.-..     ....||.+|++-++
T Consensus       105 -----------~~~kLqV~~gD~lK~-----d~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  105 -----------KSGKLQVLHGDFLKT-----DLPRFDGCVSNLPY  133 (315)
T ss_pred             -----------ccceeeEEecccccC-----CCcccceeeccCCc
Confidence                       235788888665443     24689999987554

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.06  E-value=1e-05  Score=70.95  Aligned_cols=99  Identities=13%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEe---cchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           67 RVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~v~~~---D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++||+|||+|..|..+..++..+..+   |..+ .+..|.+    -|++            .-+.+.     ....++++
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp------------a~~~~~-----~s~rLPfp  178 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP------------AMIGVL-----GSQRLPFP  178 (506)
T ss_pred             EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc------------hhhhhh-----ccccccCC
Confidence            58999999999999999888753333   2211 2222221    1211            011111     11346677


Q ss_pred             CCCccEEEEeccccCccCH-HHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          143 APPFDYIIGTDVVYAEHLL-EPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~-~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      +..||+|-++.|+-.+... .-++-.+.++|+|||.++++.++-+
T Consensus       179 ~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  179 SNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             ccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            8999999999988654333 3478889999999999999987644

; GO: 0008168 methyltransferase activity

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.01  E-value=8.2e-05  Score=60.17  Aligned_cols=109  Identities=13%  Similarity=0.086  Sum_probs=73.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+..|-|+|||-+-++.   ..-.+|+..|+-.          .                 +-+++..|..+   .+..+
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~-----------------~~~V~~cDm~~---vPl~d  226 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V-----------------NERVIACDMRN---VPLED  226 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeec----------C-----------------CCceeeccccC---CcCcc
Confidence            44679999999886554   3334588888411          0                 11233333333   34457


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v  206 (222)
                      ++.|++|.+-.+. ..++..+++.+.++|++||.+||+...-.......|.+.+. -||.+...
T Consensus       227 ~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~  289 (325)
T KOG3045|consen  227 ESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK  289 (325)
T ss_pred             CcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence            8999998875553 56788999999999999999999976533333566887774 58877544

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.00  E-value=2.2e-05  Score=58.28  Aligned_cols=44  Identities=30%  Similarity=0.413  Sum_probs=39.5

Q ss_pred             eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhc
Q 027530           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      ++||+|||.|..++.+++.+.  +|+++|. +++.+.+++|++.|+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~   47 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL   47 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC
Confidence            489999999999999998876  5999998 7799999999998874

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.99  E-value=2.9e-05  Score=64.01  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ..-+++.+.+.+       ...++..|||+|+|+|.++..++..+.+|+++|. ++.++.+++....             
T Consensus        15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------------   74 (262)
T PF00398_consen   15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------------   74 (262)
T ss_dssp             HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred             CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence            345555555542       2337889999999999999999999999999999 5688888776552             


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL  171 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~  171 (222)
                        ..++++...|..+.............|++|-+++   .-.+++..+...
T Consensus        75 --~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~---is~~il~~ll~~  120 (262)
T PF00398_consen   75 --NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYN---ISSPILRKLLEL  120 (262)
T ss_dssp             --CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGT---GHHHHHHHHHHH
T ss_pred             --cccceeeecchhccccHHhhcCCceEEEEEeccc---chHHHHHHHhhc
Confidence              2588999877766544332345677888886652   223444444443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.98  E-value=0.00013  Score=57.98  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=77.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+..+++||||.=||.-++..|..   +.+|+++|+ .+..+...+-.+..+..            ..|++++..-.+.-
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~------------~KI~~i~g~a~esL  138 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD------------HKITFIEGPALESL  138 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc------------ceeeeeecchhhhH
Confidence            346689999999999988887765   678999999 56888888877777753            57888875544321


Q ss_pred             c-c--cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 H-I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~-~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      + +  ....+.||+++.-   .+.......+..+-+++++||++++-.
T Consensus       139 d~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  139 DELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence            1 1  1235789999864   234555578888889999999887643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=8.3e-05  Score=59.48  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=75.3

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh--hHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE--VLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~--~l~~~~~n~~~n~~~~~~~~  116 (222)
                      .++.-|.+.+.+.       .-+++|+.|||+|+-||-.+-.+.+.|| +|+++|...  +..-++.+            
T Consensus        62 RG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------------  122 (245)
T COG1189          62 RGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------------  122 (245)
T ss_pred             cHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------------
Confidence            4578888888877       5688999999999999999999999998 599999732  33232221            


Q ss_pred             CCCCCCCCceEEE-EeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          117 PGSGNLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       117 ~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                             .++.+. ..+...... ....+..|++++.-.+   -....++..+..+++|++.+++-
T Consensus       123 -------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         123 -------PRVIVLERTNVRYLTP-EDFTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             -------CcEEEEecCChhhCCH-HHcccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEE
Confidence                   233332 222222111 1123478888865443   34667888888889988776653

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=0.0001  Score=63.37  Aligned_cols=109  Identities=23%  Similarity=0.272  Sum_probs=72.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ...+|.+|||++++.|-=+..+|++    |..|++.|. +.=++.+++|+++-++.             ++.+...|-..
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-------------nv~~~~~d~~~  219 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-------------NVIVVNKDARR  219 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-------------ceEEEeccccc
Confidence            3457899999999998766555554    345899999 55899999999988853             45555544332


Q ss_pred             CccccccCCCccEEEEec------cccCc----------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          136 EDHIKAVAPPFDYIIGTD------VVYAE----------------HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d------~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .........+||.|+.-.      ++...                .....++....+++||||.++.++
T Consensus       220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            222222233699998632      22111                124558888888999999887664

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.95  E-value=5.6e-05  Score=67.96  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=72.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+..+||||||.|-..+.+|....  .++|+|+ ...+..+.+.+...++             .|+.+...++..... .
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-------------~N~~~~~~~~~~~~~-~  412 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-------------TNFLLFPNNLDLILN-D  412 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-------------CeEEEEcCCHHHHHH-h
Confidence            456799999999999999998876  5999998 5556655555554443             366666544321111 1


Q ss_pred             ccCCCccEEEEe--ccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~--d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+.++|.|..+  |+=.-..      ..+.+++.+.++|+|||.+++.+-.
T Consensus       413 ~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        413 LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            235678887654  3332211      2466999999999999999987654

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.84  E-value=2e-05  Score=61.15  Aligned_cols=49  Identities=29%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhhhccCCCCCC-CCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEecchh
Q 027530           41 ASVVFVKYLEKNCRKGRFCP-SKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE   96 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~-~~~-~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~~~   96 (222)
                      ++..|.+.+...       . ... .+.+||||||++|-.+..+.+.+   .+|+++|+..
T Consensus         5 a~~KL~ei~~~~-------~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~   58 (181)
T PF01728_consen    5 AAFKLYEIDEKF-------KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP   58 (181)
T ss_dssp             HHHHHHHHHHTT-------SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred             HHHHHHHHHHHC-------CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence            455666666554       2 112 45899999999999999999887   5799999843

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.84  E-value=0.0002  Score=58.46  Aligned_cols=128  Identities=16%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.++||=||-|.|...-.+.+..  .+|+++|+ +.+++.+++-+......         -..+++++...|-...  +.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~---------~~d~r~~i~~~Dg~~~--l~  144 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG---------LDDPRVRIIIGDGRKF--LK  144 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT---------GGSTTEEEEESTHHHH--HH
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc---------cCCCceEEEEhhhHHH--HH
Confidence            45899999999999888888765  47999999 56999998876654321         0235788876332211  12


Q ss_pred             ccCC-CccEEEEe--ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcC--hhHHHHHHHHHhcCCe
Q 027530          141 AVAP-PFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~-~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~--~~~~~~f~~~~~~~~~  202 (222)
                      ...+ +||+|+.-  ++.....  .-..+++.++++|+|+|++.+-.....  ........+.++..|.
T Consensus       145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            2234 89999963  2111111  136799999999999999877553322  2233444455555553

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.84  E-value=5.8e-06  Score=64.59  Aligned_cols=94  Identities=20%  Similarity=0.270  Sum_probs=70.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +..++||||+|.|-++..++..--+|++|+.++ |...+++. ..                 + .....+|.+.      
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~y-----------------n-Vl~~~ew~~t------  166 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NY-----------------N-VLTEIEWLQT------  166 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CC-----------------c-eeeehhhhhc------
Confidence            457999999999999998887766799999865 66666542 10                 1 1234566533      


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCC-CeEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~-~g~~~l~~  182 (222)
                      +-+||+|.+-.++-...+.-.+++.|+.+++| +|+++++-
T Consensus       167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            46899999888886666677899999999998 88888764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.82  E-value=0.00036  Score=57.45  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=84.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhc------ccc--------------cc-----
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RIS--------------QM-----  115 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~------~~~--------------~~-----  115 (222)
                      ...+.+||==|||.|.++..+|.+|..+.+.|.+- |+-.  .|.-.|..      .+-              +.     
T Consensus        54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            34557899999999999999999999999999865 5322  33333321      110              00     


Q ss_pred             ---CCCC-CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE----cC-
Q 027530          116 ---NPGS-GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI----RS-  186 (222)
Q Consensus       116 ---~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~----r~-  186 (222)
                         .|.. .....++....+|+.+........++||.|+.+=.+=-.+++-..+++|.++|||||..+=..+-    .. 
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~  211 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM  211 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence               0100 01234555555444433222222479999998822222345667899999999999965533221    11 


Q ss_pred             --------hhHHHHHHHHHh-cCCeEEE
Q 027530          187 --------TSVHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       187 --------~~~~~~f~~~~~-~~~~v~~  205 (222)
                              .-..+++....+ .||++..
T Consensus       212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~  239 (270)
T PF07942_consen  212 SIPNEMSVELSLEEIKELIEKLGFEIEK  239 (270)
T ss_pred             CCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence                    112456666664 4887753

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.81  E-value=0.00016  Score=56.97  Aligned_cols=104  Identities=18%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+|.+||++|-|.|+..-.+..... +-+.++. ++++..++.+.-..              .++|.+..+.|.+.... 
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--------------k~nViil~g~WeDvl~~-  164 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--------------KENVIILEGRWEDVLNT-  164 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--------------ccceEEEecchHhhhcc-
Confidence            4788999999999998888877765 4677786 88888888765433              25888899999876432 


Q ss_pred             ccCCCccEEEEeccc-cCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~-y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+++.||-|+- |.+ -..++...+.+.+.++|||+|++-...
T Consensus       165 L~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  165 LPDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             ccccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            23667999974 333 234556778889999999999875543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.81  E-value=0.00055  Score=57.96  Aligned_cols=116  Identities=12%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ++..|.+.+........-.....+|+++|||||++|-.+..+.+.|++|+++|...+-.    ++..             
T Consensus       188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~----~L~~-------------  250 (357)
T PRK11760        188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ----SLMD-------------  250 (357)
T ss_pred             HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH----hhhC-------------
Confidence            45566665544311000001246889999999999999999999999999999644322    2221             


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC--eEEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGY  182 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~--g~~~l~~  182 (222)
                        ..+|.....+-....  + ....+|++++ |+..   ....+++.+.+.+..|  ..+++.-
T Consensus       251 --~~~V~h~~~d~fr~~--p-~~~~vDwvVc-Dmve---~P~rva~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        251 --TGQVEHLRADGFKFR--P-PRKNVDWLVC-DMVE---KPARVAELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             --CCCEEEEeccCcccC--C-CCCCCCEEEE-eccc---CHHHHHHHHHHHHhcCcccEEEEEE
Confidence              235665553322221  1 1568999985 5543   3445666666666544  3444443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.80  E-value=0.00063  Score=49.58  Aligned_cols=103  Identities=23%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             EEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        68 vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      ++|+|||+|... .++...   ..++++|. +.++...+........             ..+.+...+.... ..+...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~  116 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-------------GLVDFVVADALGG-VLPFED  116 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-------------CceEEEEeccccC-CCCCCC
Confidence            999999999876 444443   37899998 4567664433322110             0145555554431 122223


Q ss_pred             -CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          144 -PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       144 -~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                       ..||++......++.. ....+..+.+.++|+|.+++......
T Consensus       117 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         117 SASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             CCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence             4799994444433333 78899999999999999988776543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.79  E-value=5.4e-05  Score=65.34  Aligned_cols=45  Identities=18%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             eEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcc
Q 027530           67 RVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSR  111 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~  111 (222)
                      .|||+|+|||++++++++.|+ .||+++. ..|.+.|++-..+|+.+
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S  115 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS  115 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence            489999999999999999998 4999997 77999999999999854

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.77  E-value=2.3e-05  Score=64.11  Aligned_cols=133  Identities=22%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             EEEeeCCC----CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhh
Q 027530           23 LQFSQDPN----SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEV   97 (222)
Q Consensus        23 ~~i~q~~~----~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~   97 (222)
                      ..+.|...    ...+|..+|++++.|+.++.++       +....+.++.++|||.++..+.+++..--|...|. ..+
T Consensus        52 ~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~  124 (262)
T KOG2497|consen   52 KVILQSHSLRFLLARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCA  124 (262)
T ss_pred             eeeecchHHHHHHHHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcH
Confidence            44555543    3568889999999999999987       55578899999999999988666655444444443 223


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhc
Q 027530           98 LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS  172 (222)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l  172 (222)
                      .-....+...+.....         ...-+.-..+|......+. ....+|+|+++|++|. ....+++..+..+|
T Consensus       125 ~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL  190 (262)
T KOG2497|consen  125 GLLLEEIILLSRDLSL---------EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL  190 (262)
T ss_pred             HHHHHHHHhccccccc---------cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence            3333333332221100         0011111222221111111 1234999999999999 77777787777754

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.76  E-value=8.1e-05  Score=62.18  Aligned_cols=45  Identities=11%  Similarity=0.002  Sum_probs=38.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      .+|..+||.+||.|--+..+++..   .+|+++|. ++|++.+++++..
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            456799999999999999888774   57999999 6799999987753

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.72  E-value=0.00058  Score=54.07  Aligned_cols=133  Identities=17%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecchhhHHHHHHHHHHhhccccccCCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +++.++.+||.......   .......++||+||=+....+.  ..+ .+|+.+|+...                     
T Consensus        30 dSSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------------   83 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------------   83 (219)
T ss_pred             chhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCCC---------------------
Confidence            36899999998763211   0111225899999975433222  222 35999997320                     


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCH---HHHHHHHHHhcCCCeE-----EEEEEEE------
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTT-----ILLGYEI------  184 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~~ll~~~~~~l~~~g~-----~~l~~~~------  184 (222)
                            .-.+.+.|+-+........++||+|.++-++-..+..   -..++.+.++|+|+|.     ++++.+.      
T Consensus        84 ------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS  157 (219)
T PF11968_consen   84 ------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS  157 (219)
T ss_pred             ------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc
Confidence                  1122333443332222346789999999998776554   4488888999999999     8887764      


Q ss_pred             cChhHHHHHHHHHh-cCCeEEE
Q 027530          185 RSTSVHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       185 r~~~~~~~f~~~~~-~~~~v~~  205 (222)
                      |+- ..+.|.+.+. -||....
T Consensus       158 Ry~-~~~~l~~im~~LGf~~~~  178 (219)
T PF11968_consen  158 RYM-TEERLREIMESLGFTRVK  178 (219)
T ss_pred             ccc-CHHHHHHHHHhCCcEEEE
Confidence            222 2455666554 3776543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.70  E-value=3e-05  Score=63.31  Aligned_cols=148  Identities=16%  Similarity=0.253  Sum_probs=81.5

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhc-cc-------cccCCCCCC-------C
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSGN-------L  122 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~~-------~  122 (222)
                      +...+|.++||+|||+-+.-+..|..-+ +++++|+ +...+.+++=++..+. .+       +...+....       .
T Consensus        52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            4566888999999999776655554444 6999998 5566655543332211 11       111111110       0


Q ss_pred             CCce-EEEEeecCCCccccc---cCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh-------
Q 027530          123 LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRST-------  187 (222)
Q Consensus       123 ~~~v-~~~~~d~~~~~~~~~---~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------  187 (222)
                      ...| .+...|..+...+..   .+++||+|++.-++-.    .+.....++.+.++|||||.++++.-....       
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~  211 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH  211 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence            1123 355666665544433   2346999999877743    234566778888889999999987532221       


Q ss_pred             -----hHHHHHHH-HH-hcCCeEEEec
Q 027530          188 -----SVHEQMLQ-MW-KSNFNVKLVP  207 (222)
Q Consensus       188 -----~~~~~f~~-~~-~~~~~v~~v~  207 (222)
                           ...+++.+ .+ +.+|.+....
T Consensus       212 ~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  212 KFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ecccccCCHHHHHHHHHHcCCEEEecc
Confidence                 12344443 34 4689887766

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=97.65  E-value=0.00031  Score=56.90  Aligned_cols=83  Identities=18%  Similarity=0.228  Sum_probs=55.8

Q ss_pred             eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP  145 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (222)
                      +|||+-+|+|..|+.++.+|++|+++|. +.+...+++|++...... +...   ....++++...|..+..  ......
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~---~~~~ri~l~~~da~~~L--~~~~~~  164 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-EIGG---WLQERLQLIHASSLTAL--TDITPR  164 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc-ccch---hhhceEEEEeCcHHHHH--hhCCCC
Confidence            8999999999999999999999999998 568888899988742110 0000   01135666664433221  112347


Q ss_pred             ccEEEEeccc
Q 027530          146 FDYIIGTDVV  155 (222)
Q Consensus       146 fD~Ii~~d~~  155 (222)
                      ||+|..-+++
T Consensus       165 fDVVYlDPMf  174 (250)
T PRK10742        165 PQVVYLDPMF  174 (250)
T ss_pred             CcEEEECCCC
Confidence            9999965554

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.0016  Score=51.29  Aligned_cols=116  Identities=17%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|+||||-.|-.+..+++...   +|+++|+.++-                       ....|.+.+.|..+...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------------~~~~V~~iq~d~~~~~~   99 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------------PIPGVIFLQGDITDEDT   99 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------------cCCCceEEeeeccCccH
Confidence            34578999999999999999997643   39999974421                       12346778877766543


Q ss_pred             cc-----ccCCCccEEEEeccccC------------ccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530          139 IK-----AVAPPFDYIIGTDVVYA------------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       139 ~~-----~~~~~fD~Ii~~d~~y~------------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~  201 (222)
                      ..     ....++|+|++- ..-.            .......+.....+|+|+|.+++-.-. .. ....++..++..|
T Consensus       100 ~~~l~~~l~~~~~DvV~sD-~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq-g~-~~~~~l~~~~~~F  176 (205)
T COG0293         100 LEKLLEALGGAPVDVVLSD-MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ-GE-DFEDLLKALRRLF  176 (205)
T ss_pred             HHHHHHHcCCCCcceEEec-CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe-CC-CHHHHHHHHHHhh
Confidence            21     123457999842 2211            011233555666679999998765433 22 2467777777666


Q ss_pred             eE
Q 027530          202 NV  203 (222)
Q Consensus       202 ~v  203 (222)
                      ..
T Consensus       177 ~~  178 (205)
T COG0293         177 RK  178 (205)
T ss_pred             ce
Confidence            44

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.63  E-value=0.0058  Score=48.73  Aligned_cols=160  Identities=15%  Similarity=0.137  Sum_probs=88.2

Q ss_pred             cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC--CEEEEecc-hhhHHHHHHHHHH
Q 027530           33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g--~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      ....++|+.-. .||..+.....    .-...+|.+||-||+.+|..---++- .|  ..|++++. +...+.+-.-++.
T Consensus        45 ~~eYR~W~P~RSKLaAai~~Gl~----~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~  120 (229)
T PF01269_consen   45 KVEYRVWNPFRSKLAAAILKGLE----NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK  120 (229)
T ss_dssp             -EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             ccceeecCchhhHHHHHHHcCcc----ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc
Confidence            34667887432 45554443211    02455789999999999986555553 34  36999998 5444444322221


Q ss_pred             hhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          108 NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       108 n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                                     ..||--+-.|...+..-...-+.+|+|++ |+- ..+...-++......||+||.++++.+.|+-
T Consensus       121 ---------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~si  183 (229)
T PF01269_consen  121 ---------------RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSI  183 (229)
T ss_dssp             ---------------STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             ---------------CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcc
Confidence                           12455455454444333333468898885 443 2445566778888899999999999887654


Q ss_pred             h-------HHHHHHHHHhc-CCeE-EEecCCCCCc
Q 027530          188 S-------VHEQMLQMWKS-NFNV-KLVPKAKEST  213 (222)
Q Consensus       188 ~-------~~~~f~~~~~~-~~~v-~~v~~~~~~~  213 (222)
                      +       ++..-.+.++. +|++ +.+.-+....
T Consensus       184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~  218 (229)
T PF01269_consen  184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYER  218 (229)
T ss_dssp             -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTST
T ss_pred             cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCC
Confidence            2       22333344443 7877 5555544433

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PHA01634 hypothetical protein

Probab=97.55  E-value=0.00018  Score=51.98  Aligned_cols=51  Identities=14%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhc
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      ..++++++|+|+|++.|-.+|..+..||+ |++.+. +...+..++|++.|.+
T Consensus        24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            35679999999999999999999999995 999998 5588889999998864

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00075  Score=56.09  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=70.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++||-||-|.|...-.+.+..  .+++.+|+ +++++.+++=+..-...         ...+++++...|-.+.  ....
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~---------~~dpRv~i~i~Dg~~~--v~~~  146 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG---------ADDPRVEIIIDDGVEF--LRDC  146 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc---------cCCCceEEEeccHHHH--HHhC
Confidence            699999999999999888876  47999999 66999998865532210         1135777776443222  1122


Q ss_pred             CCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ..+||+||.. +.-...     .-..+.+.+++.|+++|++..-
T Consensus       147 ~~~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         147 EEKFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCcCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            3489999964 221111     1367999999999999987654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.53  E-value=0.0015  Score=53.92  Aligned_cols=101  Identities=18%  Similarity=0.141  Sum_probs=61.1

Q ss_pred             CeEEEeCCCc-cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHH-HhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           66 KRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        66 ~~vLelGcG~-G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++|+=||||. -+.++.+++.   ++.|+++|+ +++++.+++-+. ..++            ..++++...|..+.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L------------~~~m~f~~~d~~~~---  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL------------SKRMSFITADVLDV---  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-------------SSEEEEES-GGGG---
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc------------cCCeEEEecchhcc---
Confidence            5999999997 8888888864   457999999 679999987666 3343            35788888554332   


Q ss_pred             cccCCCccEEEEecccc-CccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y-~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ...-..||+|+.+-.+. ....-..++..+.+.++||..+++=
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            22236899998776665 3456778999999999999987773

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.50  E-value=6.9e-05  Score=59.16  Aligned_cols=80  Identities=19%  Similarity=0.152  Sum_probs=64.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  141 (222)
                      .-..|+|.-||.|-..+..|..++.|+++|+ +.-+..|+.|++--|++            ++|++.++||-+... +..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~------------~rItFI~GD~ld~~~~lq~  161 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP------------DRITFICGDFLDLASKLKA  161 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC------------ceeEEEechHHHHHHHHhh
Confidence            3457999999999999999999999999999 66899999999998865            499999999876532 223


Q ss_pred             cCCCccEEEEeccc
Q 027530          142 VAPPFDYIIGTDVV  155 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~  155 (222)
                      ....+|.|+.+++-
T Consensus       162 ~K~~~~~vf~sppw  175 (263)
T KOG2730|consen  162 DKIKYDCVFLSPPW  175 (263)
T ss_pred             hhheeeeeecCCCC
Confidence            34457788877654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.48  E-value=0.0048  Score=48.95  Aligned_cols=114  Identities=15%  Similarity=0.073  Sum_probs=78.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.++.|+||=.|.+++++.+.+.  .+++.|+ +-.++.+.+|+..+++.            +++++..+|-   ...-
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------~~i~vr~~dg---l~~l   80 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ERIDVRLGDG---LAVL   80 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------ceEEEeccCC---cccc
Confidence            345699999999999999998875  5999998 55999999999998753            6788877553   2111


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHH
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ  195 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~  195 (222)
                      ..+..+|+|+-+.+-  -..+..++..-...|+.--++++ .+.-+....++|+.
T Consensus        81 ~~~d~~d~ivIAGMG--G~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~  132 (226)
T COG2384          81 ELEDEIDVIVIAGMG--GTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLS  132 (226)
T ss_pred             CccCCcCEEEEeCCc--HHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHH
Confidence            234579998877664  44566677776776764445444 44444444555554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.48  E-value=0.00036  Score=51.96  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=37.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHH-----h-CCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           63 LKGKRVIELGAGCGVAGFGMAL-----L-GCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~-----~-g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      .+..+|+|+|||.|.+|..++.     . +.+|+++|. ++.++.+.+..+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            4567899999999999999998     3 558999998 557777777666544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.37  E-value=0.0042  Score=51.57  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+.-++|||+|||+|....++... +  .+++++|. +.|++.++.-++ +...           ....     .|...
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~-----------~~~~-----~~~~~   92 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPN-----------NRNA-----EWRRV   92 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccc-----------cccc-----hhhhh
Confidence            3567789999999999766555543 2  25999998 458887776443 2211           0000     01110


Q ss_pred             ccc-cccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          137 DHI-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       137 ~~~-~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ... ...-...|+|+++.++-....  ...+++.+...+++  .++|+.+.
T Consensus        93 ~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG  141 (274)
T PF09243_consen   93 LYRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG  141 (274)
T ss_pred             hhcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence            000 001223499999999876444  34456666555655  56565543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.36  E-value=0.0017  Score=54.88  Aligned_cols=107  Identities=15%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             CCCeEEEeCCCccHH-HHHHHHh-----CCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEE--EEeecC
Q 027530           64 KGKRVIELGAGCGVA-GFGMALL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA--VELDWG  134 (222)
Q Consensus        64 ~~~~vLelGcG~G~~-~i~la~~-----g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~--~~~d~~  134 (222)
                      ++..++|||||.|.= .+.|..+     ...++.+|++ ++++.+.+++....             .+.+.+  ...|+.
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-------------~p~l~v~~l~gdy~  142 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-------------FSHVRCAGLLGTYD  142 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-------------CCCeEEEEEEecHH
Confidence            456899999999974 3333322     3469999995 58988888887222             123444  555554


Q ss_pred             CCcc-ccc--cCCCccEEEEec-cccC--ccCHHHHHHHHHH-hcCCCeEEEEEEE
Q 027530          135 NEDH-IKA--VAPPFDYIIGTD-VVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE  183 (222)
Q Consensus       135 ~~~~-~~~--~~~~fD~Ii~~d-~~y~--~~~~~~ll~~~~~-~l~~~g~~~l~~~  183 (222)
                      +... ++.  ......+++... .+-+  ......+++.+.+ .|+|++.++++.-
T Consensus       143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence            3321 111  123456666544 4433  3445679999999 9999999998754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.012  Score=48.19  Aligned_cols=105  Identities=10%  Similarity=-0.015  Sum_probs=71.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||-|+|+|-++.++++.-   .+++-.|+ ..-.+.+.+-.+..++            .+++++..-|....
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi------------~~~vt~~hrDVc~~  169 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI------------GDNVTVTHRDVCGS  169 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC------------CcceEEEEeecccC
Confidence            45589999999999999999999874   36888998 4456667777777764            47889988777654


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      -... ....+|.|+..     .......+..+..+|+.+|.-+.+..
T Consensus       170 GF~~-ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS  210 (314)
T KOG2915|consen  170 GFLI-KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS  210 (314)
T ss_pred             Cccc-cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence            2211 14578877753     22333445555667777775444443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.34  E-value=0.0027  Score=52.96  Aligned_cols=145  Identities=21%  Similarity=0.234  Sum_probs=90.8

Q ss_pred             ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhcccc
Q 027530           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (222)
Q Consensus        38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (222)
                      +++.+-.++..+..          ..+|.+|||++|+.|-=+..++.+-   ..|++.|+ .+-+..+++|+++.+..  
T Consensus        69 vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--  136 (283)
T PF01189_consen   69 VQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--  136 (283)
T ss_dssp             EHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--
T ss_pred             eccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--
Confidence            55555555555542          3477889999999998777777652   47999998 66899999999987743  


Q ss_pred             ccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc------ccCcc----------------CHHHHHHHHHHh
Q 027530          114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV------VYAEH----------------LLEPLLQTIFAL  171 (222)
Q Consensus       114 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~------~y~~~----------------~~~~ll~~~~~~  171 (222)
                                 ++.+...|...... ......||.|+.-.+      +....                ....+++...++
T Consensus       137 -----------~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~  204 (283)
T PF01189_consen  137 -----------NVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL  204 (283)
T ss_dssp             -----------SEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred             -----------eEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence                       56666533222111 112346999986322      11111                134588888889


Q ss_pred             c----CCCeEEEEEE----EEcChhHHHHHHHHHhcCCeEEEec
Q 027530          172 S----GPKTTILLGY----EIRSTSVHEQMLQMWKSNFNVKLVP  207 (222)
Q Consensus       172 l----~~~g~~~l~~----~~r~~~~~~~f~~~~~~~~~v~~v~  207 (222)
                      +    +|||+++.++    +.-+..+.+.|++.- ..|++..++
T Consensus       205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~  247 (283)
T PF01189_consen  205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP  247 (283)
T ss_dssp             EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred             hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence            9    9999887665    223344566676642 245544433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.13  E-value=0.0019  Score=55.52  Aligned_cols=104  Identities=17%  Similarity=0.138  Sum_probs=73.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHH-HHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKR-NVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~-n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+++..++|+|||.|-+....+..+ +++++.|. +.-+..... +.... +            ..+..+.. .|  .-
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l------------~~k~~~~~-~~--~~  170 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L------------DNKCNFVV-AD--FG  170 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h------------hhhcceeh-hh--hh
Confidence            34566689999999999998888765 67999997 433333222 22221 1            11223322 22  23


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ..++.+..||.+-+.+..-+......+++.+.+.++|||..+.
T Consensus       171 ~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  171 KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             cCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence            3345678999999999999999999999999999999998765

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.12  E-value=0.0068  Score=44.93  Aligned_cols=104  Identities=19%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC-CCccEEEEeccccCcc------
Q 027530           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH------  159 (222)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~fD~Ii~~d~~y~~~------  159 (222)
                      +|++.|+ +++++.+++.++.++..            .++++..-.......  ..+ +++|.++.| .-|-+.      
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~------------~~v~li~~sHe~l~~--~i~~~~v~~~iFN-LGYLPggDk~i~   65 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE------------DRVTLILDSHENLDE--YIPEGPVDAAIFN-LGYLPGGDKSIT   65 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G------------SGEEEEES-GGGGGG--T--S--EEEEEEE-ESB-CTS-TTSB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC------------CcEEEEECCHHHHHh--hCccCCcCEEEEE-CCcCCCCCCCCC
Confidence            5899998 67999999999988753            478887644443322  123 489999876 333321      


Q ss_pred             -CHHH---HHHHHHHhcCCCeEEEEEEEEcChh------HHHHHHHHHh-cCCeEEEe
Q 027530          160 -LLEP---LLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       160 -~~~~---ll~~~~~~l~~~g~~~l~~~~r~~~------~~~~f~~~~~-~~~~v~~v  206 (222)
                       ..+.   .++.+.++|+|||.+.++....++.      ....|++.+. ..|.|...
T Consensus        66 T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~  123 (140)
T PF06962_consen   66 TKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY  123 (140)
T ss_dssp             --HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred             cCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence             1233   4555566789999998877664442      2345555553 46776443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.02  E-value=0.00021  Score=50.34  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=36.3

Q ss_pred             EEeCCCccHHHHHHHHh----C-CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           69 IELGAGCGVAGFGMALL----G-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        69 LelGcG~G~~~i~la~~----g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      ||+|+..|..++.+++.    + .+++++|.....+..++++++.+.            ..++++...+-.+... ....
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~------------~~~~~~~~g~s~~~l~-~~~~   67 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL------------SDRVEFIQGDSPDFLP-SLPD   67 (106)
T ss_dssp             --------------------------EEEESS------------GGG-------------BTEEEEES-THHHHH-HHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC------------CCeEEEEEcCcHHHHH-HcCC
Confidence            79999999888776653    2 269999973323344455544332            2467887744322111 1114


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      .+||+|+.-. -+..+....-+..+...|+|||.+++
T Consensus        68 ~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   68 GPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             --EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            7899998543 22234455567777788999998765

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.88  E-value=0.004  Score=53.96  Aligned_cols=102  Identities=25%  Similarity=0.216  Sum_probs=71.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.+|||-=||+|+=|+-.+..  +. +|++-|+ +++++.+++|++.|++.           .+.+++...|.....  .
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----------~~~~~v~~~DAn~ll--~  116 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----------DERIEVSNMDANVLL--Y  116 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----------GCCEEEEES-HHHHH--C
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----------CceEEEehhhHHHHh--h
Confidence            458999999999999988876  33 6999999 67999999999999975           125666664432211  1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .....||+|=. |++   ....+++....+.++.||.++++..
T Consensus       117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence            24678999853 443   3567899999999999999988764

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.88  E-value=0.0028  Score=50.69  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCCeEEEeCCCccHHH-H-HHHHhCCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCC--Cc
Q 027530           64 KGKRVIELGAGCGVAG-F-GMALLGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGN--ED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~-i-~la~~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~  137 (222)
                      ++.++||+|.|.-.+- + -.-..|-+.+++|+ +.++..|+.++..| ++.            ..|+.....=.+  +.
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~------------~~I~lr~qk~~~~if~  145 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE------------RAIRLRRQKDSDAIFN  145 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh------------hheeEEeccCcccccc
Confidence            4567899988753211 1 11234678999999 55999999999988 332            334433211000  01


Q ss_pred             cccccCCCccEEEEeccccCc
Q 027530          138 HIKAVAPPFDYIIGTDVVYAE  158 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~  158 (222)
                      .....++.||++++++++|..
T Consensus       146 giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         146 GIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             ccccccceeeeEecCCCcchh
Confidence            112236799999999999763

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.62  E-value=0.011  Score=48.52  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++.|+.|+=+| ---+.|++++.-|.  +|..+|+++ .++...+-++.-+.             .++....+|..++.
T Consensus       149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-------------~~ie~~~~Dlr~pl  214 (354)
T COG1568         149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-------------NNIEAFVFDLRNPL  214 (354)
T ss_pred             cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-------------cchhheeehhcccC
Confidence            678899999999 66788888887664  699999976 88888887776653             36777777777654


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC---eEEEEEEEEcChhHHHHHHHHH
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK---TTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~---g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      .. ....+||+.+. |+.+-...+..++..=-..|+.-   |.+.++....+-....++.+.+
T Consensus       215 pe-~~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~l  275 (354)
T COG1568         215 PE-DLKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRIL  275 (354)
T ss_pred             hH-HHHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHH
Confidence            32 23578999885 45454455555555444455543   5555554433333344555533

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.54  E-value=0.0058  Score=50.71  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      +|+||.||.|-.++.+.+.|.+ |.++|. +.+++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            6999999999999999999997 778998 558888777764

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.22  Score=39.32  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=67.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHH-HhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMA-LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la-~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=||+-+|...--.+ -.| ..|++++. +.+++-+..-++..               .|+--.-.|...++
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---------------~Ni~PIL~DA~~P~  137 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---------------PNIIPILEDARKPE  137 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---------------CCceeeecccCCcH
Confidence            45688999999999997554444 344 35999998 54444333322211               13333433433332


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                      .-...-+..|+|.. |+- .....+-+.......|+++|.++++.+.|+-+
T Consensus       138 ~Y~~~Ve~VDviy~-DVA-Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSId  186 (231)
T COG1889         138 KYRHLVEKVDVIYQ-DVA-QPNQAEILADNAEFFLKKGGYVVIAIKARSID  186 (231)
T ss_pred             HhhhhcccccEEEE-ecC-CchHHHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence            22223455777663 332 13344557777888999999999999988753

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.47  E-value=0.028  Score=47.00  Aligned_cols=117  Identities=21%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHH--HHHHHHH--hhccc--------------cccCCCC-----
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPL--LKRNVEW--NTSRI--------------SQMNPGS-----  119 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~--~~~n~~~--n~~~~--------------~~~~~~~-----  119 (222)
                      ...+||==|||.|.++..+|..|.++-+-+.+. |+-.  -.-|.-+  |...+              .+++|.+     
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            456799999999999999999999888887765 3321  1122211  11110              1122211     


Q ss_pred             ----CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          120 ----GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       120 ----~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                          ...........+|+-+........+.||+|+.+-.+=-.+.+-+.+++|.++|+|||+.+-
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence                0111222233333322222222245799999883333356677889999999999998663

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.46  E-value=0.0053  Score=51.81  Aligned_cols=109  Identities=19%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHH-------HHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ..+|+-|.|=-.|||-+-+.+|..|+-|.|+|++- ++.       ..+.|+++-+..           ..-+.+...|.
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~-----------~~fldvl~~D~  274 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-----------SQFLDVLTADF  274 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc-----------chhhheeeecc
Confidence            44788999999999988889999999999999964 555       345566655522           12344555454


Q ss_pred             CCCccccccCCCccEEEEeccccCc----------------------------------cCHHHHHHHHHHhcCCCeEEE
Q 027530          134 GNEDHIKAVAPPFDYIIGTDVVYAE----------------------------------HLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       134 ~~~~~~~~~~~~fD~Ii~~d~~y~~----------------------------------~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .+..-  ..+..||.||+-+++ ..                                  ..+.+++.-..+.|..||++.
T Consensus       275 sn~~~--rsn~~fDaIvcDPPY-GVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv  351 (421)
T KOG2671|consen  275 SNPPL--RSNLKFDAIVCDPPY-GVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLV  351 (421)
T ss_pred             cCcch--hhcceeeEEEeCCCc-chhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEE
Confidence            43221  125689999976654 21                                  123445566666788899887


Q ss_pred             EEEEE
Q 027530          180 LGYEI  184 (222)
Q Consensus       180 l~~~~  184 (222)
                      +-.+.
T Consensus       352 ~w~p~  356 (421)
T KOG2671|consen  352 FWLPT  356 (421)
T ss_pred             EecCc
Confidence            65543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.44  E-value=0.033  Score=47.59  Aligned_cols=109  Identities=13%  Similarity=0.043  Sum_probs=70.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhC-C-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+||=||-|-|+..-.+.+.- . +++.+|. |+|++.++.|.-.....-..      -...++++..-|..+.  ....
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~s------f~dpRv~Vv~dDAf~w--lr~a  362 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGS------FSDPRVTVVNDDAFQW--LRTA  362 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCC------ccCCeeEEEeccHHHH--HHhh
Confidence            579999999999888888764 3 7999999 78999999765432221000      1234677776333322  1223


Q ss_pred             CCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...||+||..-+=-...     .-.++...+++.|+++|.+++..
T Consensus       363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            56899998641110111     13457888899999999987754

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.42  E-value=0.02  Score=48.51  Aligned_cols=94  Identities=14%  Similarity=-0.002  Sum_probs=64.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      ...+|+|.|.|.+.-.+...-.+|-+++.  +.+++.+. +.. -+                |..+..|.   ...   -
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~g----------------V~~v~gdm---fq~---~  234 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PG----------------VEHVAGDM---FQD---T  234 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CC----------------cceecccc---ccc---C
Confidence            67899999999988777766666777776  33444433 332 22                23333222   111   3


Q ss_pred             CCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ++-|+|+.--+++++.  +..++++.+++.|+|+|.+++...
T Consensus       235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            4567999999998854  577899999999999999998764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.41  E-value=0.13  Score=44.76  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             cCeEEEEeeCCCCcc-ccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh
Q 027530           19 LGHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE   96 (222)
Q Consensus        19 ~~~~~~i~q~~~~~~-~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~   96 (222)
                      ..++++++..|.... ....-|+++- +|.+++...         ...+ +||=|+=.-|.+++.++..+.. ..+|.--
T Consensus         7 ~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~   75 (378)
T PRK15001          7 GFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYI   75 (378)
T ss_pred             CCceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHH
Confidence            348899999897555 5589999875 455555432         1222 7999999999999999865543 3366322


Q ss_pred             hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530           97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  176 (222)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g  176 (222)
                      .-..++.|+++|++.           .+.++...  -     .......+|+|+.-=+- ........+..+..++.|++
T Consensus        76 ~~~~~~~n~~~n~~~-----------~~~~~~~~--~-----~~~~~~~~d~vl~~~PK-~~~~l~~~l~~l~~~l~~~~  136 (378)
T PRK15001         76 SELATRENLRLNGID-----------ESSVKFLD--S-----TADYPQQPGVVLIKVPK-TLALLEQQLRALRKVVTSDT  136 (378)
T ss_pred             HHHHHHHHHHHcCCC-----------cccceeec--c-----cccccCCCCEEEEEeCC-CHHHHHHHHHHHHhhCCCCC
Confidence            446678899999853           12233332  1     11124569988842111 12345557778888899999


Q ss_pred             EEEEEEEEcC
Q 027530          177 TILLGYEIRS  186 (222)
Q Consensus       177 ~~~l~~~~r~  186 (222)
                      .++.+...+.
T Consensus       137 ~ii~g~~~k~  146 (378)
T PRK15001        137 RIIAGAKARD  146 (378)
T ss_pred             EEEEEEecCC
Confidence            9876665544

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.0051  Score=52.11  Aligned_cols=107  Identities=14%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++|.-+++||+|.|.|....++-..-.   .++.++.+.+++..-..+..|...                 ...+|...+
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----------------~~td~r~s~  172 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----------------EKTDWRASD  172 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----------------ccCCCCCCc
Confidence            677888999999999865444333222   366666554555555555554322                 223333221


Q ss_pred             c-----ccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 H-----IKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~-----~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .     .-.....|++++..+-+-....   +...++.+..+++|||.++|+...
T Consensus       173 vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         173 VTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             cchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence            1     1112457898887766655443   333677777789999998887753

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.23  E-value=0.011  Score=49.67  Aligned_cols=98  Identities=20%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ....|.+||=+|||. |++++..|+. |+ +|+.+|. ++-++.|++ +-...                +...... ...
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~----------------~~~~~~~-~~~  227 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV----------------TDPSSHK-SSP  227 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE----------------Eeecccc-ccH
Confidence            455788999999998 9999888875 77 6999998 668888887 32111                0000000 000


Q ss_pred             ccc------cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~------~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...      ......+|+.+-+.      -...-+++.-..++.+|.+.++.
T Consensus       228 ~~~~~~v~~~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  228 QELAELVEKALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             HHHHHHHHhhccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEec
Confidence            100      01124577777543      34667777778889999877765

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.21  E-value=0.014  Score=46.29  Aligned_cols=56  Identities=25%  Similarity=0.274  Sum_probs=40.6

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~  103 (222)
                      +-...|.+.+...        ...+|..|||--||+|..++++.++|-+.+++|+ ++.++.|++
T Consensus       175 ~kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3356677766654        2346889999999999999999999999999999 557877764

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.19  E-value=0.018  Score=47.31  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             CeEEEeCCCccH--HHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           66 KRVIELGAGCGV--AGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        66 ~~vLelGcG~G~--~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...||||||.-.  ..-..|+.   .++|+-+|. +-++..++.-+..+.             .....+++.|..+...+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------------~g~t~~v~aD~r~p~~i  136 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------------RGRTAYVQADLRDPEAI  136 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------------TSEEEEEE--TT-HHHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------------CccEEEEeCCCCCHHHH
Confidence            359999999532  23445443   568999999 557777777666443             12478888888776433


Q ss_pred             cc---cCCCc-----cEEEEeccccCc---cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          140 KA---VAPPF-----DYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ~~---~~~~f-----D~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      ..   ...-+     =.++...++++.   +....+++.+...|.||..+.+++....
T Consensus       137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence            21   11222     256667787764   4577899999999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.17  E-value=0.0037  Score=54.07  Aligned_cols=72  Identities=22%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhc
Q 027530           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      ..+|..-|.+ .+..+.-.-   +    .-...|..|-|+.||.|..++.+++.+..|++-|. ++++++++.|+..|.+
T Consensus       225 ~DfskVYWns-RL~~Eherl---s----g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  225 FDFSKVYWNS-RLSHEHERL---S----GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             EecceEEeec-cchhHHHHH---h----hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence            3466667984 333332211   0    22335778999999999999999999999999998 8999999999999986


Q ss_pred             c
Q 027530          111 R  111 (222)
Q Consensus       111 ~  111 (222)
                      .
T Consensus       297 ~  297 (495)
T KOG2078|consen  297 D  297 (495)
T ss_pred             c
Confidence            4

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.14  E-value=0.08  Score=45.96  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=22.9

Q ss_pred             CCeEEEeCCCccHHHHHHHHh------------C-----CEEEEecch
Q 027530           65 GKRVIELGAGCGVAGFGMALL------------G-----CNVITTDQI   95 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~------------g-----~~v~~~D~~   95 (222)
                      ..+|+|+|||+|..++.+...            +     .+|.+.|++
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP  111 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP  111 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence            458999999999887665431            1     358899984

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.11  E-value=0.23  Score=43.25  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             CCCCCCeEEEeCCCccHHHH-HHHHhC--CEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGF-GMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i-~la~~g--~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||++|-.|-=+. .++...  ..|++.|.. .-+..++.|+.+-+..             +..+..+|-..+
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-------------ntiv~n~D~~ef  304 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-------------NTIVSNYDGREF  304 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-------------ceEEEccCcccc
Confidence            34588999999999975333 333332  359999984 5889999999988753             444444443322


Q ss_pred             ccccccCCCccEEEE----ec--cccCc----------------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIG----TD--VVYAE----------------HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~----~d--~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..... .++||-|+.    +.  +++..                +....|+....+++++||+++.++
T Consensus       305 ~~~~~-~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  305 PEKEF-PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ccccc-CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            22222 338999874    33  33322                224557777778889999876654

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.04  E-value=0.069  Score=45.64  Aligned_cols=115  Identities=11%  Similarity=-0.011  Sum_probs=57.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------------C------CEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~------------g------~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      +.-+|.|+||.+|..++.+...            +      .+|+..|++. =...+=+++..+.....        ...
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~--------~~~   87 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK--------KFR   87 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH--------HTT
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC--------CCc
Confidence            3358999999999988876642            2      2699999842 22222222222210000        001


Q ss_pred             ceEEEEeecCCCccccccCCCccEEEEeccccCcc---------------------------------------CHHHHH
Q 027530          125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------------LLEPLL  165 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------------------------~~~~ll  165 (222)
                      ++-+ .+-=+.+.....+.++.|+++++-.++|.+                                       ++..+|
T Consensus        88 ~~f~-~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL  166 (334)
T PF03492_consen   88 NYFV-SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL  166 (334)
T ss_dssp             SEEE-EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEE-EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence            2222 222244454455678888888888777621                                       122233


Q ss_pred             HHHHHhcCCCeEEEEEEEEcCh
Q 027530          166 QTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       166 ~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      +.-.+-|+|||++++....|..
T Consensus       167 ~~Ra~ELv~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  167 KARAEELVPGGRMVLTFLGRDE  188 (334)
T ss_dssp             HHHHHHEEEEEEEEEEEEE-ST
T ss_pred             HHhhheeccCcEEEEEEeeccc
Confidence            3334447899999999887765

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.95  E-value=0.014  Score=41.00  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecc
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ   94 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~   94 (222)
                      ....|||||.|++--.|.+.|.+=.|+|.
T Consensus        60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   60 QGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CceEEccCCchHHHHHHHhCCCCcccccc
Confidence            46999999999999999999999999996

; GO: 0008168 methyltransferase activity

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.93  E-value=0.044  Score=46.88  Aligned_cols=99  Identities=20%  Similarity=0.298  Sum_probs=71.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-c
Q 027530           65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-K  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  140 (222)
                      ..+|||-=||+|+=||-.+.. +. +|++-|+ +++++.+++|++.|..             ++..+..   .|...+ .
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-------------~~~~v~n---~DAN~lm~  116 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-------------EDAEVIN---KDANALLH  116 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-------------ccceeec---chHHHHHH
Confidence            578999999999999988865 55 7999999 7799999999999932             2334443   222111 1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .....||+|=. |++   ....+++....+..+.+|.+.++..
T Consensus       117 ~~~~~fd~IDi-DPF---GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         117 ELHRAFDVIDI-DPF---GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             hcCCCccEEec-CCC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence            12368998832 443   3456789999898999998877653

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.92  E-value=0.045  Score=43.08  Aligned_cols=113  Identities=9%  Similarity=-0.009  Sum_probs=67.1

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      -.+.|||||-|-+-+.++.+-..  +.|.++ ..+-+..++.+..-....     . .....++.+....-......-+.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a-~~~~~ni~vlr~namk~lpn~f~  135 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-----A-EGQYPNISVLRTNAMKFLPNFFE  135 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-----c-ccccccceeeeccchhhccchhh
Confidence            46899999999888888888664  889998 668888888776544210     0 01123444443222211110011


Q ss_pred             C--CCccEEEEeccccCcc------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 A--PPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~--~~fD~Ii~~d~~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .  -+-++.+..|+-+...      .-..++....-+|++||.+|..+..
T Consensus       136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            1  1234444455544321      1345778888889999999887654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.91  E-value=0.031  Score=49.59  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ..|+|+.+|.|-++.++.....   +|+-++.+..+..    +-.-|+                --.-.||.+..  +.-
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL----------------IG~yhDWCE~f--sTY  424 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL----------------IGVYHDWCEAF--STY  424 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc----------------chhccchhhcc--CCC
Confidence            3699999999966666655442   2333332333322    222221                12456888553  334


Q ss_pred             CCCccEEEEeccccCc---cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc-CCeEEEecCC
Q 027530          143 APPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKA  209 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~-~~~v~~v~~~  209 (222)
                      +.+||+|-++.++-..   -.+..++-.+.++|+|+|.++|-+..   .+..+.....+. .+++.....+
T Consensus       425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~e  492 (506)
T PF03141_consen  425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDTE  492 (506)
T ss_pred             CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEecC
Confidence            7899999988776432   24677899999999999999984432   233333333332 4555555444

; GO: 0008168 methyltransferase activity

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.86  E-value=0.13  Score=46.44  Aligned_cols=42  Identities=36%  Similarity=0.479  Sum_probs=34.2

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~  103 (222)
                      ..++.+|+=+|||. |+.++..|+ +|++|+++|. ++.++.+++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45688999999997 999887775 5899999998 666666655

>PRK11524 putative methyltransferase; Provisional

Probab=95.83  E-value=0.036  Score=46.17  Aligned_cols=46  Identities=20%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      ..+|..|||--||+|..++++.++|-+.+|+|+ ++.++.+++.+..
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            458899999999999999999999999999999 6688888887753

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.80  E-value=0.045  Score=48.38  Aligned_cols=99  Identities=18%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE-EEEecchh-hHHHHH-HHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      -++|-+|||.--+..-+-.-|.+ |+.+|++. +++.+. .|+..+               ....+...|.   ....+.
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---------------~~~~~~~~d~---~~l~fe  111 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---------------PEMQMVEMDM---DQLVFE  111 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---------------cceEEEEecc---hhccCC
Confidence            38999999999888877777875 99999965 666554 343221               2445555333   344556


Q ss_pred             CCCccEEEEeccc----------cCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTDVV----------YAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~----------y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +++||+||.=..+          ++.......+..+.++++++|+.+...
T Consensus       112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            7899999874443          222344557888889999999876543

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.79  E-value=0.073  Score=45.36  Aligned_cols=95  Identities=26%  Similarity=0.245  Sum_probs=57.4

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|++|+=.|+|- |..++-+|+ +|++|+++|.+ +-++.+++--+                  . .+.  ++.+.+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------------------d-~~i--~~~~~~  221 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------------------D-HVI--NSSDSD  221 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------------------c-EEE--EcCCch
Confidence            345789999999982 557777776 79999999984 45555554211                  1 112  222222


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ......+.||+|+..-.       ...+....+.|+++|++.+...
T Consensus       222 ~~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         222 ALEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             hhHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence            22222345999985422       4455566667788888776543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.77  E-value=0.078  Score=40.44  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~l-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      ++..|++.+.+.         ...+.+|+=|||=+-...+.- ...+.++++.|++.-....       +          
T Consensus        11 T~~~l~~~l~~~---------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~-------~----------   64 (162)
T PF10237_consen   11 TAEFLARELLDG---------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF-------G----------   64 (162)
T ss_pred             HHHHHHHHHHHh---------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc-------C----------
Confidence            456777777653         224578999988755444443 1124469999986511110       0          


Q ss_pred             CCCCCceEEEEeecCCCcccc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          120 GNLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                          ++ .+...|.......+ ...++||+||+-+++...+.......++..++++++.++++...+...
T Consensus        65 ----~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~  129 (162)
T PF10237_consen   65 ----GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEE  129 (162)
T ss_pred             ----Cc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHH
Confidence                12 35556655554433 235799999999999778888889999999999999999888655443

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.67  E-value=0.051  Score=43.88  Aligned_cols=85  Identities=22%  Similarity=0.300  Sum_probs=43.8

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      .+|||.-+|.|.-++.+|..|++|++++.+. +-..++.-++.........    .....++++...|..+...  ....
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~----~~~~~ri~l~~~d~~~~L~--~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELL----AEAMRRIQLIHGDALEYLR--QPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTH----HHHHHHEEEEES-CCCHCC--CHSS
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhH----HHHHhCCEEEcCCHHHHHh--hcCC
Confidence            4899999999999999999999999999854 3333343333221100000    0012477888766554322  3467


Q ss_pred             CccEEEEeccccC
Q 027530          145 PFDYIIGTDVVYA  157 (222)
Q Consensus       145 ~fD~Ii~~d~~y~  157 (222)
                      +||+|.. |++|-
T Consensus       151 s~DVVY~-DPMFp  162 (234)
T PF04445_consen  151 SFDVVYF-DPMFP  162 (234)
T ss_dssp             --SEEEE---S--
T ss_pred             CCCEEEE-CCCCC
Confidence            9999997 45554

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.66  E-value=0.28  Score=38.29  Aligned_cols=33  Identities=18%  Similarity=0.004  Sum_probs=27.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC-C--EEEEecc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQ   94 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g-~--~v~~~D~   94 (222)
                      ..++.+|||+||-.|..+..+-++. .  .|.++|+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl  102 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL  102 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence            3467899999999999999888774 3  4899996

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.42  Score=40.99  Aligned_cols=135  Identities=16%  Similarity=0.103  Sum_probs=75.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC------EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC------NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~------~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ...+|.+|||+++-.|-=++.+.+..+      .|++-|.+ .-+..++.-+.+-.             ..++.+...+.
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-------------~~~~~v~~~~~  218 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-------------SPNLLVTNHDA  218 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-------------Ccceeeecccc
Confidence            345788999999999977766655433      68999984 34444433332211             12223332222


Q ss_pred             CCCccc------cccCCCccEEEEe-----ccccCcc------------------CHHHHHHHHHHhcCCCeEEEEEE--
Q 027530          134 GNEDHI------KAVAPPFDYIIGT-----DVVYAEH------------------LLEPLLQTIFALSGPKTTILLGY--  182 (222)
Q Consensus       134 ~~~~~~------~~~~~~fD~Ii~~-----d~~y~~~------------------~~~~ll~~~~~~l~~~g~~~l~~--  182 (222)
                      ......      +.....||-|++-     |......                  ..-.++..-.++|++||+++.++  
T Consensus       219 ~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  219 SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             eeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence            221111      1123578888752     2221110                  12236666778899999987765  


Q ss_pred             --EEcChhHHHHHHHHHhcCCeEEEecC
Q 027530          183 --EIRSTSVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       183 --~~r~~~~~~~f~~~~~~~~~v~~v~~  208 (222)
                        +.++..+.+..++.+...+.+..+..
T Consensus       299 LnpieNEaVV~~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  299 LNPIENEAVVQEALQKVGGAVELVDVSG  326 (375)
T ss_pred             CCchhhHHHHHHHHHHhcCcccceeecc
Confidence              45666677777877766665544433

>PRK13699 putative methylase; Provisional

Probab=95.40  E-value=0.075  Score=42.84  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=39.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      .+|..|||--||+|..++++.++|.+.+++|+ ++..+.+.+.++.
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999 6677887776654

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=95.37  E-value=0.29  Score=39.73  Aligned_cols=140  Identities=11%  Similarity=0.088  Sum_probs=96.5

Q ss_pred             cccch---HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccc
Q 027530           37 TVWDA---SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (222)
Q Consensus        37 ~~W~~---~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (222)
                      ++|..   ...|..|+..-       .....+.+ |..=||+-.++-.+.+..-++.++++ ++=...++.|+..     
T Consensus        66 RL~~a~~lpa~l~~yl~~i-------~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~-----  132 (279)
T COG2961          66 RLWQAADLPAELEPYLDAV-------RQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG-----  132 (279)
T ss_pred             HHHhcCCchHHHHHHHHHH-------HHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence            46653   44666777654       12334433 88889998888888887788999998 7766777777772     


Q ss_pred             cccCCCCCCCCCceEEEEeec-CCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcC--CCeEEEEEEEEcChhH
Q 027530          113 SQMNPGSGNLLGSIQAVELDW-GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSV  189 (222)
Q Consensus       113 ~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~l~~~~r~~~~  189 (222)
                                ..++++.+.|= ...-...++.++=-+|+--+++........+++++.+.++  ++|+..|=++......
T Consensus       133 ----------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~  202 (279)
T COG2961         133 ----------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQ  202 (279)
T ss_pred             ----------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHH
Confidence                      24677776441 1111111224455677777777777889999999999877  7888888888877766


Q ss_pred             HHHHHHHHhc
Q 027530          190 HEQMLQMWKS  199 (222)
Q Consensus       190 ~~~f~~~~~~  199 (222)
                      ...|++.++.
T Consensus       203 ~~~f~~~L~~  212 (279)
T COG2961         203 IRRFLRALEA  212 (279)
T ss_pred             HHHHHHHHhh
Confidence            7888888764

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.34  E-value=0.026  Score=47.47  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      +++||.||.|..++.+.+.|.+ |.++|+ +.+.+..+.|..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence            6999999999999999999987 779999 557777777765

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.05  E-value=0.017  Score=47.95  Aligned_cols=97  Identities=21%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CCCeEEEeCCCccHHHH-HHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i-~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+..|.||-+|.|.+.+ .+...||+ |++.|. +.+++.+++|++.|++.            .+..+..+|    ....
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~------------~r~~i~~gd----~R~~  257 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM------------DRCRITEGD----NRNP  257 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH------------HHHHhhhcc----cccc
Confidence            45789999999999999 88888986 999998 88999999999999754            233333322    1122


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .++...|-|... .+  ++.-..+..+++.+-..||.++
T Consensus       258 ~~~~~AdrVnLG-Ll--PSse~~W~~A~k~Lk~eggsil  293 (351)
T KOG1227|consen  258 KPRLRADRVNLG-LL--PSSEQGWPTAIKALKPEGGSIL  293 (351)
T ss_pred             Cccccchheeec-cc--cccccchHHHHHHhhhcCCcEE
Confidence            235566766543 22  3444445555554444455333

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.03  E-value=0.034  Score=45.90  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             cccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhcc
Q 027530           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR  111 (222)
Q Consensus        33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~  111 (222)
                      .+-...||-..   +|+...          -.|..++|.|||.|-....-  -...+++.|... .+.-+++.   +.  
T Consensus        27 ~tr~~~Wp~v~---qfl~~~----------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~---~~--   86 (293)
T KOG1331|consen   27 ATRAAPWPMVR---QFLDSQ----------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS---GG--   86 (293)
T ss_pred             ccccCccHHHH---HHHhcc----------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC---CC--
Confidence            34556787443   444322          13788999999998322111  112478888744 44444321   10  


Q ss_pred             ccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEE
Q 027530          112 ISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       112 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~  181 (222)
                                  .  ...   ..+....+.....||.+++.-+++|...   ...+++.+.+.++|||.+.+-
T Consensus        87 ------------~--~~~---~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen   87 ------------D--NVC---RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             ------------c--eee---hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence                        0  111   1222334445789999999999988654   345788888889999986653

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.066  Score=41.12  Aligned_cols=90  Identities=16%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             EEEEeecCCCcccc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEE
Q 027530          127 QAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  205 (222)
Q Consensus       127 ~~~~~d~~~~~~~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~  205 (222)
                      .|+..|+..+.+++ ....+||+||+-+++-..+.+.+--.+++.+.++.-+++++...+-.......+.+.+-.|..+ 
T Consensus       116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe-  194 (217)
T KOG3350|consen  116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE-  194 (217)
T ss_pred             eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence            56666776655443 2356799999999988888888899999999999999999887655544444444333445443 


Q ss_pred             ecCCCCCcccCCC
Q 027530          206 VPKAKESTMWGNP  218 (222)
Q Consensus       206 v~~~~~~~~~~~~  218 (222)
                       ...-+...|++-
T Consensus       195 -H~~nLaNeF~cy  206 (217)
T KOG3350|consen  195 -HERNLANEFRCY  206 (217)
T ss_pred             -hhcccccceeEE
Confidence             233455555553

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.68  E-value=0.72  Score=37.47  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             cccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHH-HHHHHhCCE--EEEecchh
Q 027530           33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAG-FGMALLGCN--VITTDQIE   96 (222)
Q Consensus        33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~-i~la~~g~~--v~~~D~~~   96 (222)
                      .+-.++|..-. .||.-+.--+    =+.+..+|.+||=||+++|..- ...-.-|.+  |++++.++
T Consensus       128 kvEyRVWnPfrSKLAA~I~gGv----dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~  191 (317)
T KOG1596|consen  128 KVEYRVWNPFRSKLAAGILGGV----DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH  191 (317)
T ss_pred             cEEEEEeChHHHHHHHHhhcCc----cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence            67778998532 2333332211    0124568899999999999743 333334554  88888743

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.58  E-value=0.2  Score=42.19  Aligned_cols=45  Identities=13%  Similarity=0.075  Sum_probs=37.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      .+|..++|.-+|.|--+..+++.  ..+|+++|. ++++..+++.++.
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            46679999999999888877765  368999999 6799999888764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.30  E-value=0.11  Score=44.25  Aligned_cols=41  Identities=27%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      .+++||.||.|-+++.+...|.+ +.+.|+ +.+++.-+.|..
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence            58999999999999999999998 668898 568888777766

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.15  E-value=0.25  Score=42.40  Aligned_cols=98  Identities=24%  Similarity=0.246  Sum_probs=58.5

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+.+|+=+|||+ |++++.+++. |+ +|+++|. ++-++.|++-.....                +....-+ .....
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~----------------~~~~~~~-~~~~~  229 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV----------------VVNPSED-DAGAE  229 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE----------------eecCccc-cHHHH
Confidence            3444999999998 9998877765 65 6999998 667777765221100                0000000 00000


Q ss_pred             c-cc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 I-KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~-~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      . .. ....+|+++=+--      ....+..+.++++|+|.+.+..-
T Consensus       230 ~~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         230 ILELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             HHHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence            0 11 1236999874322      34577888888999998876543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=93.97  E-value=0.82  Score=41.22  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=66.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-hC-----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~-~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.|-.||+|-.-+.+++ .+     ..++|.+. +.....++.|+-.++...            .+....   ++.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~------------~~~i~~---~dt  250 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG------------DANIRH---GDT  250 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc------------cccccc---ccc
Confidence            445899999999854433332 22     34889997 669999999999988641            111111   111


Q ss_pred             ccc-----cccCCCccEEEEeccccCc-------------------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHI-----KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~-----~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...     .....+||+|++++++...                         ..-..++..+...|+|+|++-++.+
T Consensus       251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            111     1134679999999998510                         0125588888888999876655443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.89  E-value=1.6  Score=37.08  Aligned_cols=95  Identities=21%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|++||=.|||. |+.++.+|+. |+ +|+++|. ++-++.+++    -+..            .-+.....++.   .
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~------------~vi~~~~~~~~---~  228 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD------------KLVNPQNDDLD---H  228 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc------------EEecCCcccHH---H
Confidence            4688999999875 6666666654 77 5889997 555555543    1211            00000000111   1


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .....+.+|+|+-+  .    -....+....++++++|++++..
T Consensus       229 ~~~~~g~~D~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        229 YKAEKGYFDVSFEV--S----GHPSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             HhccCCCCCEEEEC--C----CCHHHHHHHHHHhhcCCEEEEEc
Confidence            11112358988743  2    11345667778889999887654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=93.88  E-value=0.33  Score=39.51  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ..+|+|||||.=-+++.....  ++.+++.|+ ..+++.+..-+..-+.              ..++...|....    .
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--------------~~~~~v~Dl~~~----~  167 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--------------PHDARVRDLLSD----P  167 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---------------CEEEEEE-TTTS----H
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--------------CcceeEeeeecc----C
Confidence            468999999987777766655  458999999 5689988877665542              345554443322    2


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      +....|+.+.--++...+.  ....++.+..+  +.-.++++++.|+-
T Consensus       168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL  213 (251)
T PF07091_consen  168 PKEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSL  213 (251)
T ss_dssp             TTSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES---
T ss_pred             CCCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccc
Confidence            3567999987644421111  01122222222  23466778887653

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=93.82  E-value=0.073  Score=44.70  Aligned_cols=77  Identities=17%  Similarity=0.213  Sum_probs=48.9

Q ss_pred             EEEeCCCccHHHHHHHH----hCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---cc
Q 027530           68 VIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---HI  139 (222)
Q Consensus        68 vLelGcG~G~~~i~la~----~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~  139 (222)
                      =+|||.|+  ..|..+.    .+....+||+.+ .++.+++|+.+|++.            +.+.+++..-.+..   ..
T Consensus       106 GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls------------s~ikvV~~~~~ktll~d~~  171 (419)
T KOG2912|consen  106 GIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS------------SLIKVVKVEPQKTLLMDAL  171 (419)
T ss_pred             eeeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccccc------------cceeeEEecchhhcchhhh
Confidence            36887664  4444332    244688999966 899999999999864            45555543221110   00


Q ss_pred             -cccCCCccEEEEeccccCc
Q 027530          140 -KAVAPPFDYIIGTDVVYAE  158 (222)
Q Consensus       140 -~~~~~~fD~Ii~~d~~y~~  158 (222)
                       ...+..||++++++++|..
T Consensus       172 ~~~~e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  172 KEESEIIYDFCMCNPPFFEN  191 (419)
T ss_pred             ccCccceeeEEecCCchhhc
Confidence             1124469999999999864

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.61  E-value=0.068  Score=47.33  Aligned_cols=104  Identities=22%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  137 (222)
                      .++.+|||-=|++|+=+|-.|+.  |. +|++-|. +.+++..++|++.|+..            +.+.....|..... 
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~------------~ive~~~~DA~~lM~  175 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE------------DIVEPHHSDANVLMY  175 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch------------hhcccccchHHHHHH
Confidence            35568999999999999988875  33 5999998 56999999999999753            23444433322111 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ........||+|=. |++   .....+++...+.++.||.++++.
T Consensus       176 ~~~~~~~~FDvIDL-DPy---Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  176 EHPMVAKFFDVIDL-DPY---GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             hccccccccceEec-CCC---CCccHHHHHHHHHhhcCCEEEEEe
Confidence            11122478998853 343   234568999999999999998865

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.48  E-value=0.99  Score=35.76  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHH----h--CCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMAL----L--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~----~--g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +-+.|+|+|.=.|--.+..|.    .  .++|+++|++ .....  +.++..            ....+|++.+++..+.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~h------------p~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESH------------PMSPRITFIQGDSIDP   97 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----------------TTEEEEES-SSST
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhc------------cccCceEEEECCCCCH
Confidence            446999999998866665553    2  2479999983 22111  111111            1236899999887665


Q ss_pred             ccccc---cCCCcc-EEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKA---VAPPFD-YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~---~~~~fD-~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +....   ....++ ++|.-|.-+..+....-++....++++|+.+++.+
T Consensus        98 ~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen   98 EIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             HHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             HHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            43221   111233 23445666666677777888899999999988743

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.41  E-value=0.74  Score=34.54  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=60.4

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+.+|||+|-|.+-+.+++.|. .-+++++ +-.+...+...-+.+..            ....+..-|.-..+   ..+
T Consensus        74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~------------k~trf~RkdlwK~d---l~d  138 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA------------KSTRFRRKDLWKVD---LRD  138 (199)
T ss_pred             CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc------------cchhhhhhhhhhcc---ccc
Confidence            4799999999999999999995 6899998 56888887776666542            23444432221111   113


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      -.+-+|+..+.     ....+...+..-+..+..++-+
T Consensus       139 y~~vviFgaes-----~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  139 YRNVVIFGAES-----VMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             cceEEEeehHH-----HHhhhHHHHHhhCcCCCeEEEE
Confidence            34555665533     3455555565556666665443

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=93.03  E-value=0.93  Score=37.31  Aligned_cols=108  Identities=20%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC--cccc--
Q 027530           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE--DHIK--  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~--  140 (222)
                      ..|+.||||.=.-+.-+... +..++=+|.+++++.=++-+..++..          ...+..++..|..+.  ..+.  
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~----------~~~~~~~v~~Dl~~~w~~~L~~~  152 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE----------PPAHRRAVPVDLRQDWPAALAAA  152 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC----------CCCceEEeccCchhhHHHHHHhC
Confidence            36999999975555544322 45677788888887766666655421          124556665554411  0111  


Q ss_pred             -ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 -~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ......-++++-.+++.  .+....+++.+.+...||+.+++-+.
T Consensus       153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~  198 (260)
T TIGR00027       153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV  198 (260)
T ss_pred             CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence             11234456777777755  34577899999998889888877654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.91  E-value=0.05  Score=38.46  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=29.6

Q ss_pred             CccEEEEeccccCc------cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          145 PFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~------~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +||+|+|-.+.-+.      +-+..+++.+...|+|||.+++-.++
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            48999998887553      34677999999999999999997653

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.72  E-value=1.2  Score=38.93  Aligned_cols=75  Identities=23%  Similarity=0.383  Sum_probs=48.9

Q ss_pred             CeEEEeCCCc-cHHH-HHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           66 KRVIELGAGC-GVAG-FGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        66 ~~vLelGcG~-G~~~-i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++||=||||. |... ..+|+.+ .+|+..|. .+.++.+..+..                 .++++.++|..+...+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------------~~v~~~~vD~~d~~al~~   64 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------------GKVEALQVDAADVDALVA   64 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------------ccceeEEecccChHHHHH
Confidence            5799999974 4433 2345556 68999997 454444433322                 367888888887765544


Q ss_pred             cCCCccEEEEeccccC
Q 027530          142 VAPPFDYIIGTDVVYA  157 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~  157 (222)
                      .-..+|+||.+-+.|.
T Consensus        65 li~~~d~VIn~~p~~~   80 (389)
T COG1748          65 LIKDFDLVINAAPPFV   80 (389)
T ss_pred             HHhcCCEEEEeCCchh
Confidence            4566799998766543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=92.59  E-value=0.17  Score=42.89  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             EEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530           68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        68 vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      |+||.||.|-.++.+.+.|.+ +.++|. +.+.+..+.|..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~   41 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG   41 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence            689999999999999999998 557998 458887777754

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.22  E-value=2.8  Score=35.41  Aligned_cols=89  Identities=16%  Similarity=0.025  Sum_probs=51.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.+||=.|+|. |...+.+|+ .|++|++++. ++-++.+++    .+..               .+..  -.+.  
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---------------~vi~--~~~~--  219 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---------------SAGG--AYDT--  219 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---------------eecc--cccc--
Confidence            44688999999864 555555554 4788999886 444444433    2211               0110  0000  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         ..+.+|+++-.+..      ...+....+.++++|++.+..
T Consensus       220 ---~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       220 ---PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ---CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence               12357877654443      245667778899999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.21  E-value=0.6  Score=40.43  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=66.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc----hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ----IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~----~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ..++....|||+|.|-+...+|.. +. +=+|+++    ++ +..+...+...-....        .....+..++++..
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG--------k~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG--------KKPNKIETIHGSFL  261 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC--------CCcCceeecccccC
Confidence            345678999999998777666654 33 3444443    22 2222222322211110        11234566665555


Q ss_pred             CCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          135 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       135 ~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      +...........++|+.+.+.+.++....+- .+..-+++|.+++=.-+
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~  309 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKP  309 (419)
T ss_pred             CHHHHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccc
Confidence            4433334456899999999998877665555 66666788888765443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.21  E-value=1  Score=34.86  Aligned_cols=102  Identities=22%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             EEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC----CCCCCceEEEEeecCCCcccc
Q 027530           68 VIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS----GNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        68 vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~----~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      |-=+|+|+ | -++..++..|.+|+..|. ++.++.+++.++.+..........+    .....++++..    +   ..
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----d---l~   74 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT----D---LE   74 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES----S---GG
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc----C---HH
Confidence            55588886 5 356667778999999998 6688777776665321110000000    00112444331    1   12


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  178 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~  178 (222)
                      ... ..|+||=+- .-..+.-..+++.+.+++.|+..+
T Consensus        75 ~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~il  110 (180)
T PF02737_consen   75 EAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTIL  110 (180)
T ss_dssp             GGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEE
T ss_pred             HHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceE
Confidence            223 678887441 222334456888888888777653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.19  E-value=1.2  Score=38.01  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=51.5

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecch----hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI----EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+|.+||=+|+|. |..++.+|+ .|++|++++..    +-++.++    ..+..             .+....-++.+ 
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga~-------------~v~~~~~~~~~-  232 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGAT-------------YVNSSKTPVAE-  232 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCCE-------------EecCCccchhh-
Confidence            4678999999875 766666665 47799998852    2333332    22211             01100101111 


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                        . .....+|+|+-+  .-    ....+....+.++++|++++..
T Consensus       233 --~-~~~~~~d~vid~--~g----~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         233 --V-KLVGEFDLIIEA--TG----VPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             --h-hhcCCCCEEEEC--cC----CHHHHHHHHHHccCCcEEEEEe
Confidence              0 113468988843  21    1236677778899999887654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.14  E-value=3  Score=33.03  Aligned_cols=78  Identities=26%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++||=.|++.|+ |..+    ++.|++|++++. ++..+.+.+.+...               .++.+...|+.+.+
T Consensus         3 ~~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~~~   66 (238)
T PRK05786          3 LKGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---------------GNIHYVVGDVSSTE   66 (238)
T ss_pred             cCCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---------------CCeEEEECCCCCHH
Confidence            357899999997544 3333    345889999997 44443332322211               24566777777654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-+..|.++.+-..+
T Consensus        67 ~~~~~~~~~~~~~~~id~ii~~ag~~   92 (238)
T PRK05786         67 SARNVIEKAAKVLNAIDGLVVTVGGY   92 (238)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCc
Confidence            321       0123578877665433

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.12  E-value=0.73  Score=38.47  Aligned_cols=78  Identities=17%  Similarity=0.228  Sum_probs=56.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      -++.|+.||==|.|.|+   .++.+|++|++++..|+ .+..+...+.++.+|               ++.....|..+.
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---------------~~~~y~cdis~~   98 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---------------EAKAYTCDISDR   98 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---------------ceeEEEecCCCH
Confidence            46789999999999985   66778889999999998 555555555555444               456677777766


Q ss_pred             ccc-------cccCCCccEEEEec
Q 027530          137 DHI-------KAVAPPFDYIIGTD  153 (222)
Q Consensus       137 ~~~-------~~~~~~fD~Ii~~d  153 (222)
                      ++.       ...-+..|++|-|-
T Consensus        99 eei~~~a~~Vk~e~G~V~ILVNNA  122 (300)
T KOG1201|consen   99 EEIYRLAKKVKKEVGDVDILVNNA  122 (300)
T ss_pred             HHHHHHHHHHHHhcCCceEEEecc
Confidence            543       12346889988763

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.03  E-value=0.33  Score=38.69  Aligned_cols=119  Identities=16%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhc---ccc-----c-----cCCCC--------
Q 027530           66 KRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTS---RIS-----Q-----MNPGS--------  119 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~---~~~-----~-----~~~~~--------  119 (222)
                      -++.|=+||.|.+--.+..+.    ..|.+.|+ +++++.|++|+.+-..   .-+     .     ..|+-        
T Consensus        53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~  132 (246)
T PF11599_consen   53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD  132 (246)
T ss_dssp             EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            479999999997655554432    25999999 5699999999875321   100     0     00000        


Q ss_pred             --------CCCCCceEEEEeecCCCcccc--ccCCCccEEEEeccccCc-----c-----CHHHHHHHHHHhcCCCeEEE
Q 027530          120 --------GNLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAE-----H-----LLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       120 --------~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~Ii~~d~~y~~-----~-----~~~~ll~~~~~~l~~~g~~~  179 (222)
                              ........+...|..+.....  ......|+||. |+-|-.     .     -...++..+..+|.+++++.
T Consensus       133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViT-DlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~  211 (246)
T PF11599_consen  133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVIT-DLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA  211 (246)
T ss_dssp             HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEE-E--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred             HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEe-cCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence                    001223455554444432211  22344688875 565642     1     25668999999996666666


Q ss_pred             EEEEEc
Q 027530          180 LGYEIR  185 (222)
Q Consensus       180 l~~~~r  185 (222)
                      ++...|
T Consensus       212 v~~k~~  217 (246)
T PF11599_consen  212 VSDKGR  217 (246)
T ss_dssp             EEESSS
T ss_pred             EecCCc
Confidence            644433

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.02  E-value=1.1  Score=38.17  Aligned_cols=103  Identities=20%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++|-=||+|+ |. .+..++..|.+|++.|. ++.++.++..+...................++++..       .....
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a   80 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC   80 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence            5688889986 43 45556677999999998 667666655544322111000000000111222221       11111


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCe
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  176 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g  176 (222)
                      -...|+|+-+ +....+.-..+++.+.+.++|+.
T Consensus        81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a  113 (321)
T PRK07066         81 VADADFIQES-APEREALKLELHERISRAAKPDA  113 (321)
T ss_pred             hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence            2457777755 33333344557777777777765

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.84  E-value=0.84  Score=39.54  Aligned_cols=42  Identities=31%  Similarity=0.374  Sum_probs=31.2

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~  103 (222)
                      ..+|.+||.+|||. |...+.+|+. |. +|+++|. ++.++.+++
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            44678999999987 7777777754 65 5999987 556666665

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK11524 putative methyltransferase; Provisional

Probab=91.80  E-value=0.28  Score=40.87  Aligned_cols=43  Identities=9%  Similarity=0.044  Sum_probs=32.3

Q ss_pred             cCCCccEEEEeccccCc----------------cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~----------------~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+++||+|+++++++..                ..+..++..+.++|+|+|.+++....
T Consensus        24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524         24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            35789999999887521                11246888999999999999986544

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=91.62  E-value=0.17  Score=38.34  Aligned_cols=100  Identities=13%  Similarity=0.153  Sum_probs=58.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hH-HHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VL-PLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~-~l-~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      |++++=+|+..-.+=..+.+.|+ +|..+++.. -+ +..+..+..               ...+.+. -+|.      .
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss---------------i~p~df~-~~~~------~   59 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS---------------ILPVDFA-KNWQ------K   59 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc---------------ccHHHHH-HHHH------H
Confidence            57889999998777777778887 488887633 11 111111000               0000000 0121      1


Q ss_pred             cCCCccEEEEeccccCcc-----------CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          142 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      ..++||++.+...+.+..           --..-+..++++|||||.++++.+...
T Consensus        60 y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   60 YAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             hhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            246799888877774421           123467778889999999999887543

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=91.55  E-value=0.6  Score=33.96  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCC
Q 027530           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNL  122 (222)
Q Consensus        44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~-G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (222)
                      -+|+|+....          ...+++|+|-|. --++..|+..|..|++||+.+.      ++. .+             
T Consensus         3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~------~a~-~g-------------   52 (127)
T PF03686_consen    3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR------KAP-EG-------------   52 (127)
T ss_dssp             HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-----------S-------------
T ss_pred             hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc------ccc-cC-------------
Confidence            4788887542          234999999997 4578888899999999998442      222 22             


Q ss_pred             CCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHh
Q 027530          123 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL  171 (222)
Q Consensus       123 ~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~  171 (222)
                         +.+..=|..++..  ..-...|+|.|--+-  .+.+..+++..+++
T Consensus        53 ---~~~v~DDif~P~l--~iY~~a~lIYSiRPP--~El~~~il~lA~~v   94 (127)
T PF03686_consen   53 ---VNFVVDDIFNPNL--EIYEGADLIYSIRPP--PELQPPILELAKKV   94 (127)
T ss_dssp             ---TTEE---SSS--H--HHHTTEEEEEEES----TTSHHHHHHHHHHH
T ss_pred             ---cceeeecccCCCH--HHhcCCcEEEEeCCC--hHHhHHHHHHHHHh
Confidence               2334322222111  112467777776554  55666666666665

; PDB: 2K4M_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.46  E-value=2.4  Score=37.32  Aligned_cols=89  Identities=13%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ....|++|+=+|+|. |......+ ..|++|+.+|. +.-...++.    .+.                .....     .
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~----------------~~~~~-----~  252 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY----------------EVMTM-----E  252 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC----------------EEccH-----H
Confidence            356899999999997 77665544 45889999997 443333332    221                11110     1


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHH-HHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQ-TIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~-~~~~~l~~~g~~~l~~~  183 (222)
                      +   .-..+|+|+.+.     .. ...+. ...+.+++||+++.+..
T Consensus       253 e---~v~~aDVVI~at-----G~-~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         253 E---AVKEGDIFVTTT-----GN-KDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             H---HHcCCCEEEECC-----CC-HHHHHHHHHhcCCCCcEEEEeCC
Confidence            1   113579988652     22 33444 44778999998877654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.06  E-value=1.5  Score=36.71  Aligned_cols=84  Identities=14%  Similarity=0.011  Sum_probs=49.1

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++||=+|||. |+.++.+|+ .|++ |+++|. ++-++.++..    ..               +     +-.+ .  
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~---------------i-----~~~~-~--  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV---------------L-----DPEK-D--  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc---------------c-----Chhh-c--
Confidence            567898889886 777776665 4876 667776 4433333211    00               0     0000 0  


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                        ....+|+|+-+  .    -....+....++++++|++++..
T Consensus       197 --~~~g~Dvvid~--~----G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       197 --PRRDYRAIYDA--S----GDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             --cCCCCCEEEEC--C----CCHHHHHHHHHhhhcCcEEEEEe
Confidence              13468888743  2    12345677778889999887654

>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []

Probab=90.73  E-value=0.81  Score=34.63  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.+.|++||=+|.=.-.+...+...+.+|++...........   ..+               .++.+.   .+.  .. 
T Consensus         9 ~~f~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~---~~~---------------~~~~~~---f~~--~~-   64 (155)
T PF08468_consen    9 DLFEGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQK---QAQ---------------SNVQFH---FGA--EL-   64 (155)
T ss_dssp             HHHTT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHH---HHG---------------GGEEE----SS----H-
T ss_pred             HHHCCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhH---hcc---------------cCceEe---eec--cC-
Confidence            567889999887655555555554555666554321111111   111               123332   111  11 


Q ss_pred             ccCCCccEEEEeccccCccCHH---HHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                      .....||.||    +|++..-.   -++..+...|++|+.++++..+|..-
T Consensus        65 ~~~~~~D~vv----ly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GI  111 (155)
T PF08468_consen   65 PADQDFDTVV----LYWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGGI  111 (155)
T ss_dssp             HHHTT-SEEE----EE--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTG
T ss_pred             CcccCCCEEE----EEccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcccH
Confidence            1235799998    56665543   36778888899999999999998873

; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=90.26  E-value=2.4  Score=35.40  Aligned_cols=80  Identities=21%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCE-EEEecch----hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCN-VITTDQI----EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~-v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ..+++++|=+|+| |.--   ..++..|++ |+.++..    +..+.+.+.+...              ...+.+...+|
T Consensus       123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~--------------~~~~~~~~~d~  187 (289)
T PRK12548        123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE--------------VPECIVNVYDL  187 (289)
T ss_pred             CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc--------------CCCceeEEech
Confidence            4578899999998 5422   234466875 9888863    2222222222211              11233445555


Q ss_pred             CCCccccccCCCccEEEEecccc
Q 027530          134 GNEDHIKAVAPPFDYIIGTDVVY  156 (222)
Q Consensus       134 ~~~~~~~~~~~~fD~Ii~~d~~y  156 (222)
                      .+.......-..+|+||.+-++=
T Consensus       188 ~~~~~~~~~~~~~DilINaTp~G  210 (289)
T PRK12548        188 NDTEKLKAEIASSDILVNATLVG  210 (289)
T ss_pred             hhhhHHHhhhccCCEEEEeCCCC
Confidence            54322221224579988876654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.21  E-value=1.8  Score=36.39  Aligned_cols=100  Identities=15%  Similarity=0.066  Sum_probs=57.3

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~--G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+|+=+|+|.  |+++..|++.|.+|++++. .+-++..++   .+++.+..  .     .....+ .......    ..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~--~-----g~~~~~-~~~~~~~----~~   67 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVE--Q-----GQASLY-AIPAETA----DA   67 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEee--C-----Ccceee-ccCCCCc----cc
Confidence            4689999996  6788888888999999997 444444433   12322110  0     001111 1111111    12


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+.||+||.+-=-   ......++.+..++.+++.++....
T Consensus        68 ~~~~D~viv~vK~---~~~~~al~~l~~~l~~~t~vv~lQN  105 (305)
T PRK05708         68 AEPIHRLLLACKA---YDAEPAVASLAHRLAPGAELLLLQN  105 (305)
T ss_pred             ccccCEEEEECCH---HhHHHHHHHHHhhCCCCCEEEEEeC
Confidence            3579998765211   2355677888888888887665543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.13  E-value=2.3  Score=38.51  Aligned_cols=41  Identities=34%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~  103 (222)
                      .++.+|+=+|||. |+.++.+++ +|+.|+.+|. ++.++.++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4568999999996 787776664 5899999997 555555443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.05  E-value=1.2  Score=38.61  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             CCCC-CeEEEeCCCccHHHHHHHH-hCCEEEEecchh
Q 027530           62 KLKG-KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE   96 (222)
Q Consensus        62 ~~~~-~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~   96 (222)
                      ++-| +.|+|+|+|.|.++-+++- .|..|.++|-+.
T Consensus       150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            3444 5799999999999988884 577899999765

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=89.76  E-value=9.1  Score=30.66  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             CCCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+-.   ..+++.|++|++++. ++.++.+.+.++..+              .++.+...|..+.
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~   72 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--------------GAAEALAFDIADE   72 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCH
Confidence            3467899999997665422   233456889999997 445554444444322              3467777787765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-++.|.+|.+--.
T Consensus        73 ~~~~~~~~~~~~~~~~id~vi~~ag~   98 (256)
T PRK06124         73 EAVAAAFARIDAEHGRLDILVNNVGA   98 (256)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            4321       112468998876443

>PRK06701 short chain dehydrogenase; Provisional

Probab=89.04  E-value=5  Score=33.23  Aligned_cols=79  Identities=20%  Similarity=0.156  Sum_probs=45.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++.. + .++.....++..              ..++.+...|..+.
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~  108 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--------------GVKCLLIPGDVSDE  108 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--------------CCeEEEEEccCCCH
Confidence            5577899999987665   223344568999988863 2 233333323221              13566777777665


Q ss_pred             ccccc-------cCCCccEEEEecc
Q 027530          137 DHIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~  154 (222)
                      .....       .-.+.|+||.+-.
T Consensus       109 ~~~~~~~~~i~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        109 AFCKDAVEETVRELGRLDILVNNAA  133 (290)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            43211       1246898886543

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=88.94  E-value=2.7  Score=35.10  Aligned_cols=97  Identities=22%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+.+||..|+|. |...+.+|+ .|.+|++++. ++..+.+++    .+..            ..+.....++...- 
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~------------~~~~~~~~~~~~~~-  225 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD------------EVLNSLDDSPKDKK-  225 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC------------EEEcCCCcCHHHHH-
Confidence            34567888888763 666666665 5888999986 445554432    2211            00000000000000 


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .......+|+++-+  ..    ....++...+.|+++|.++..
T Consensus       226 ~~~~~~~~D~vid~--~g----~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         226 AAGLGGGFDVIFDF--VG----TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HHhcCCCceEEEEC--CC----CHHHHHHHHHHhhcCCEEEEE
Confidence            01124579988843  21    134677778889999988754

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK10458 DNA cytosine methylase; Provisional

Probab=88.86  E-value=1.6  Score=39.11  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (222)
                      ..+++||.||.|-+++.+-..|.+ |.++|. +.+.+.-+.|.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            458999999999888888888987 567898 44777777775

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.86  E-value=0.95  Score=36.52  Aligned_cols=102  Identities=17%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             CCCC-CeEEEeCCCccHHHHHHHHh--------CC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 027530           62 KLKG-KRVIELGAGCGVAGFGMALL--------GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV  129 (222)
Q Consensus        62 ~~~~-~~vLelGcG~G~~~i~la~~--------g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~  129 (222)
                      .++| ++++||++-.|-.+..++++        +.   +++++|+..|...                       +-|...
T Consensus        38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------------------~GV~ql   94 (294)
T KOG1099|consen   38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------------------EGVIQL   94 (294)
T ss_pred             HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------------------CceEEe
Confidence            4555 57999999999999999975        22   2899997543221                       123334


Q ss_pred             EeecCCCccc----c-ccCCCccEEEEecccc--CccC---------HHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          130 ELDWGNEDHI----K-AVAPPFDYIIGTDVVY--AEHL---------LEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       130 ~~d~~~~~~~----~-~~~~~fD~Ii~~d~~y--~~~~---------~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      +.|.......    . +..++.|+|++-..--  ..++         +...+.....+|+|||.++ +-..|..
T Consensus        95 q~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV-aKifRg~  167 (294)
T KOG1099|consen   95 QGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV-AKIFRGR  167 (294)
T ss_pred             ecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee-hhhhccC
Confidence            4444333221    1 2356899999753321  1122         2233444456699999864 3334444

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=88.80  E-value=1.9  Score=34.00  Aligned_cols=111  Identities=13%  Similarity=0.091  Sum_probs=56.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecchhhHH-HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLP-LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~~~~l~-~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+|+|+=-|.|..+-.++.. |+  .|++.--.+... ..++--+.+.....       ....+++......-   
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-------~~~aN~e~~~~~~~---  115 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-------PVYANVEVIGKPLV---  115 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-------hhhhhhhhhCCccc---
Confidence            457889999999999999887764 44  365443222111 11110111110000       00111221110000   


Q ss_pred             cccccCCCccEEEE--------eccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIG--------TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~--------~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+. ..+..|++..        +-.++ ......+.+.+.+.|||||++.+..+.
T Consensus       116 A~~-~pq~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         116 ALG-APQKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             ccC-CCCcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence            001 2234444443        33332 455778899999999999998887654

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.68  E-value=1.6  Score=37.94  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHH
Q 027530           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPL  100 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~  100 (222)
                      .++.+|+=+|+|. |...+..+ .+|++|+.+|. ++.++.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~  205 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQ  205 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence            3557799999984 66555444 45889999997 444333

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=88.33  E-value=0.91  Score=36.84  Aligned_cols=45  Identities=27%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch
Q 027530           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI   95 (222)
Q Consensus        44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~   95 (222)
                      .|+.++.+..      |.. ...+++|.-||+|.+++.+...+.+|+.-|+.
T Consensus         7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~   51 (260)
T PF02086_consen    7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDIN   51 (260)
T ss_dssp             GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-
T ss_pred             HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeech
Confidence            4666676653      222 67899999999999999888888899999983

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK06139 short chain dehydrogenase; Provisional

Probab=88.26  E-value=2.3  Score=36.21  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++||=.|++.|+   +...+++.|++|++++. ++.++.+.+.+...+              ..+.+...|..+.+.
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~d~~~   70 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--------------AEVLVVPTDVTDADQ   70 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCHHH
Confidence            467899999987664   23345567899999987 445555555554332              356667778776543


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       ..+.+|++|.+--
T Consensus        71 v~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         71 VKALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            221       1257899987643

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.25  E-value=1.1  Score=32.01  Aligned_cols=31  Identities=32%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             CeEEEeCCCcc-HHHHHHHHhCCEEEEecchh
Q 027530           66 KRVIELGAGCG-VAGFGMALLGCNVITTDQIE   96 (222)
Q Consensus        66 ~~vLelGcG~G-~~~i~la~~g~~v~~~D~~~   96 (222)
                      ++|.|+|.|-= -++-.+++.|..|++||+.+
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~   46 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINE   46 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEeccc
Confidence            48999999974 36778888999999999855

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.13  E-value=1.7  Score=37.20  Aligned_cols=41  Identities=29%  Similarity=0.396  Sum_probs=27.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCE-EEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~~-g~~-v~~~D~-~~~l~~~~  102 (222)
                      ..+|.+||=.|||. |...+.+|+. |++ |+++|. ++-.+.++
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~  218 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR  218 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            34678999999875 6666666654 774 999987 44455543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=87.88  E-value=3.6  Score=35.10  Aligned_cols=41  Identities=32%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~  102 (222)
                      ..+|.+||=.|+ | .|...+.+|+ +|++|++++. ++-.+.++
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~  200 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK  200 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            446889999998 4 4777766665 4889998886 44444443

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.83  E-value=6.8  Score=33.08  Aligned_cols=99  Identities=26%  Similarity=0.324  Sum_probs=59.5

Q ss_pred             eEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           67 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        67 ~vLelGcG~--G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      +|+=+|||.  |++|..|++.|..|+++-.++.++..+++    ++.+....       .+.......    ........
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~-------~~~~~~~~~----~~~~~~~~   66 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEG-------GNFTTPVVA----ATDAEALG   66 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCC-------Ccccccccc----ccChhhcC
Confidence            678899996  67888999999667777665544444443    44321110       001111100    01111235


Q ss_pred             CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+|+||..-=   ....+..++.+..++++...+++...
T Consensus        67 ~~Dlviv~vK---a~q~~~al~~l~~~~~~~t~vl~lqN  102 (307)
T COG1893          67 PADLVIVTVK---AYQLEEALPSLAPLLGPNTVVLFLQN  102 (307)
T ss_pred             CCCEEEEEec---cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence            8999986522   34577899999999999988766543

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.76  E-value=2.7  Score=34.21  Aligned_cols=79  Identities=15%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+....             ..++.+...|..+..
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~   71 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-------------NVDVSYIVADLTKRE   71 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCceEEEEecCCCHH
Confidence            4578899999988775   33345566999999997 444444444443211             135677777777654


Q ss_pred             cccc------cCCCccEEEEec
Q 027530          138 HIKA------VAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~~------~~~~fD~Ii~~d  153 (222)
                      ....      .-+..|+++.+-
T Consensus        72 ~i~~~~~~~~~~g~iD~lv~na   93 (263)
T PRK08339         72 DLERTVKELKNIGEPDIFFFST   93 (263)
T ss_pred             HHHHHHHHHHhhCCCcEEEECC
Confidence            3211      124689888664

>PRK07326 short chain dehydrogenase; Provisional

Probab=87.74  E-value=6.6  Score=30.97  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=42.8

Q ss_pred             CCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++|=.|++ |.+|..++    ..|++|++++. ++....+.+.+...               ..+.+...|..+...
T Consensus         5 ~~~~ilItGat-g~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~~~~~D~~~~~~   68 (237)
T PRK07326          5 KGKVALITGGS-KGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---------------GNVLGLAADVRDEAD   68 (237)
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---------------CcEEEEEccCCCHHH
Confidence            56789999964 44444443    45889999986 44333333333211               246667777665433


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       .-..+|+||.+.-
T Consensus        69 ~~~~~~~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         69 VQRAVDAIVAAFGGLDVLIANAG   91 (237)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            210       1136899886643

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=2.4  Score=36.46  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh----------CCEEEEecchhhHHHHHHHH
Q 027530           66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKRNV  105 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~----------g~~v~~~D~~~~l~~~~~n~  105 (222)
                      -.++|||+|.|.+..-+++.          ..++..++.+.-+..-+++.
T Consensus        79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~  128 (370)
T COG1565          79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET  128 (370)
T ss_pred             ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence            47999999999988655532          34789999866555544443

>PRK05867 short chain dehydrogenase; Provisional

Probab=87.36  E-value=3.3  Score=33.30  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++. .+.++.+...+...+              .++.+...|..+..
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~   71 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--------------GKVVPVCCDVSQHQ   71 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCHH
Confidence            3578899999987765   23344556899999987 444444444443221              24566677776544


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+.-+
T Consensus        72 ~~~~~~~~~~~~~g~id~lv~~ag~   96 (253)
T PRK05867         72 QVTSMLDQVTAELGGIDIAVCNAGI   96 (253)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            321       112478998876543

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.31  E-value=8.1  Score=31.22  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|+..|+   ++..+++.|++|+++|.+ +.++.+.+.+   +              .++.+...|+.+...
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dl~~~~~   66 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--------------ERARFIATDITDDAA   66 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CeeEEEEecCCCHHH
Confidence            467899999976654   233445568999999873 3222222111   1              246677778876543


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 027530          139 IK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ..       ..-++.|++|.+--.
T Consensus        67 ~~~~~~~~~~~~g~id~lv~~ag~   90 (261)
T PRK08265         67 IERAVATVVARFGRVDILVNLACT   90 (261)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112468998876443

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.22  E-value=11  Score=32.02  Aligned_cols=80  Identities=24%  Similarity=0.285  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++++||=.|++.|+-.   ..+++.|++|++++. ++.++.+.+.+...+              .++.+...|..+..
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--------------~~~~~v~~Dv~d~~   70 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--------------GEALAVVADVADAE   70 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEecCCCHH
Confidence            356788999998766522   334566899999987 445555555444322              35667777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--.
T Consensus        71 ~v~~~~~~~~~~~g~iD~lInnAg~   95 (334)
T PRK07109         71 AVQAAADRAEEELGPIDTWVNNAMV   95 (334)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCc
Confidence            3221       12478998876443

>PRK07806 short chain dehydrogenase; Provisional

Probab=87.16  E-value=11  Score=29.89  Aligned_cols=103  Identities=19%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +.++++|=.|+..|+ |..    ++..|.+|++++. . +..+.+...++..              ..++.+...|..+.
T Consensus         4 ~~~k~vlItGasggi-G~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~   68 (248)
T PRK07806          4 LPGKTALVTGSSRGI-GADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--------------GGRASAVGADLTDE   68 (248)
T ss_pred             CCCcEEEEECCCCcH-HHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--------------CCceEEEEcCCCCH
Confidence            467899999975543 333    3345889888775 2 2333333323211              13466677777765


Q ss_pred             ccccc-------cCCCccEEEEeccccCc-------------cCHHHHHHHHHHhcCCCeEEEE
Q 027530          137 DHIKA-------VAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~y~~-------------~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      +....       .-...|++|.+-.....             .....+++.+...++.+|.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~  132 (248)
T PRK07806         69 ESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF  132 (248)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence            43211       11368887755322110             0123466666666655555543

>PRK13699 putative methylase; Provisional

Probab=86.55  E-value=3.2  Score=33.42  Aligned_cols=59  Identities=14%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             cCCCccEEEEeccccC------c---------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeE
Q 027530          142 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV  203 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~------~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v  203 (222)
                      +++++|+||..+++..      .         +-...++..+.++|||||.+++....+..   ..+...+ +.+|.+
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l   91 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV   91 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence            4678999998877641      0         11346778888999999988765443322   3344444 347755

>PRK05854 short chain dehydrogenase; Provisional

Probab=86.45  E-value=5.5  Score=33.44  Aligned_cols=82  Identities=20%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+++|+++|=.|++.|+   ++..+++.|++|++++. .+-.+.+.+.+....            ...++.+..+|..+.
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~------------~~~~v~~~~~Dl~d~   77 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV------------PDAKLSLRALDLSSL   77 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC------------CCCceEEEEecCCCH
Confidence            35678999999988775   22344556899998886 333443433333221            123577888888765


Q ss_pred             cccc-------ccCCCccEEEEecc
Q 027530          137 DHIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ....       ...++.|++|.+--
T Consensus        78 ~sv~~~~~~~~~~~~~iD~li~nAG  102 (313)
T PRK05854         78 ASVAALGEQLRAEGRPIHLLINNAG  102 (313)
T ss_pred             HHHHHHHHHHHHhCCCccEEEECCc
Confidence            4321       12356899887643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.40  E-value=8.9  Score=31.80  Aligned_cols=41  Identities=34%  Similarity=0.405  Sum_probs=28.8

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027530           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        66 ~~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~  106 (222)
                      ++|-=||+|. | .++..++..|.+|++.|. ++.++.++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~   47 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA   47 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence            3577789886 3 244556667889999998 557777766553

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=86.39  E-value=7  Score=28.74  Aligned_cols=100  Identities=23%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             EEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCC
Q 027530           68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPP  145 (222)
Q Consensus        68 vLelGcG~-G-~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  145 (222)
                      |+=+|+|. | +++..|++.|.+|++++.+.-++.    +..+++.+.....     ...+.....-+..    .....+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~   67 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPDG-----DETVQPPIVISAP----SADAGP   67 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETTE-----EEEEEEEEEESSH----GHHHST
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEeccc-----ceecccccccCcc----hhccCC
Confidence            34577775 3 345555566889999987542222    4444443211110     0111111111110    123578


Q ss_pred             ccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          146 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       146 fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ||+||.+-=   ....+..++.++..+.+++.+++...
T Consensus        68 ~D~viv~vK---a~~~~~~l~~l~~~~~~~t~iv~~qN  102 (151)
T PF02558_consen   68 YDLVIVAVK---AYQLEQALQSLKPYLDPNTTIVSLQN  102 (151)
T ss_dssp             ESEEEE-SS---GGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred             CcEEEEEec---ccchHHHHHHHhhccCCCcEEEEEeC
Confidence            999987622   23567788889999999977766543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=86.27  E-value=3.1  Score=33.55  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+.+++||=.|++.|+-.   ..+++.|++|+.++..+..+.+.+.+...              ..++.+...|..+...
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~   77 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE--------------GRKVTFVQVDLTKPES   77 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc--------------CCceEEEEcCCCCHHH
Confidence            467899999999877532   23456689988887643233333322221              1356777777776543


Q ss_pred             cc-------ccCCCccEEEEecc
Q 027530          139 IK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~  154 (222)
                      ..       ..-+..|++|.+.-
T Consensus        78 i~~~~~~~~~~~g~id~li~~ag  100 (258)
T PRK06935         78 AEKVVKEALEEFGKIDILVNNAG  100 (258)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246899887643

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=86.11  E-value=17  Score=30.04  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=56.5

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..+.|+.+|-=|...|+   .+..+++.|++|+.++. ++.++.++.-+...+.           ...++.....|..+
T Consensus         3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dv~~   71 (270)
T KOG0725|consen    3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY-----------TGGKVLAIVCDVSK   71 (270)
T ss_pred             CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeeEEEECcCCC
Confidence            356789999999999886   45677888999999997 5666666555544332           13456677767665


Q ss_pred             Cccc--------cccCCCccEEEEeccc
Q 027530          136 EDHI--------KAVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~--------~~~~~~fD~Ii~~d~~  155 (222)
                      .++.        ....++.|+++.+.-.
T Consensus        72 ~~~~~~l~~~~~~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   72 EVDVEKLVEFAVEKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence            4321        1124689998876443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=86.10  E-value=0.3  Score=35.10  Aligned_cols=83  Identities=27%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             CccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc---c-c-ccCCCc
Q 027530           74 GCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH---I-K-AVAPPF  146 (222)
Q Consensus        74 G~G~~~i~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~-~-~~~~~f  146 (222)
                      |.|+.++.+|+ .|++|+++|.+ +-++.+++    .+..                 ..++..+.+.   . . .....+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~-----------------~~~~~~~~~~~~~i~~~~~~~~~   59 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD-----------------HVIDYSDDDFVEQIRELTGGRGV   59 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES-----------------EEEETTTSSHHHHHHHHTTTSSE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc-----------------ccccccccccccccccccccccc
Confidence            46888887776 48899999984 45555543    2211                 1123333211   1 1 112479


Q ss_pred             cEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          147 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      |+|+=+-.      ....++....+++++|++.+...
T Consensus        60 d~vid~~g------~~~~~~~~~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   60 DVVIDCVG------SGDTLQEAIKLLRPGGRIVVVGV   90 (130)
T ss_dssp             EEEEESSS------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred             eEEEEecC------cHHHHHHHHHHhccCCEEEEEEc
Confidence            99984422      25688888899999999887643

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=86.07  E-value=2.2  Score=34.77  Aligned_cols=115  Identities=9%  Similarity=0.066  Sum_probs=63.5

Q ss_pred             EEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-ccccccCCCc
Q 027530           69 IELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-DHIKAVAPPF  146 (222)
Q Consensus        69 LelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~f  146 (222)
                      |..=.|+-.++..+.+..-+.++.|+ ++-.+.+++|+...               .++.+...|=-.. ....++..+=
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---------------~~v~v~~~DG~~~l~allPP~~rR  126 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---------------RRVRVHHRDGYEGLKALLPPPERR  126 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---------------S-EEEE-S-HHHHHHHH-S-TTS-
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---------------CccEEEeCchhhhhhhhCCCCCCC
Confidence            44444444444444455568999998 77788888877632               3677776321100 0111223344


Q ss_pred             cEEEEeccccCccCHHHHHHHHHHhcC--CCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          147 DYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       147 D~Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      -+|+.-+++........+++++.+.++  +.|++.+=++.......+.|.+.++
T Consensus       127 glVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~  180 (245)
T PF04378_consen  127 GLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK  180 (245)
T ss_dssp             EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence            466655556567788899999998887  8899888888877766778887775

; PDB: 2OO3_A.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=85.91  E-value=3.3  Score=32.95  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=46.6

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+++||=.|++ |.+|..+    ++.|++|++++. .+.+......+...+              .++.+...|+.+..
T Consensus         4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~   68 (251)
T PRK12826          4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--------------GKARARQVDVRDRA   68 (251)
T ss_pred             CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence            467889988875 4445444    455889999986 343333333333221              34677888887654


Q ss_pred             cccc-------cCCCccEEEEecccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~y  156 (222)
                      ....       .-+++|+|+.+...+
T Consensus        69 ~~~~~~~~~~~~~~~~d~vi~~ag~~   94 (251)
T PRK12826         69 ALKAAVAAGVEDFGRLDILVANAGIF   94 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            3211       113689988775443

>PRK08862 short chain dehydrogenase; Provisional

Probab=85.82  E-value=4.4  Score=32.28  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   ++..+++.|++|+.++. .+.++.+.+.+...+              ..+.....|..+.+.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--------------~~~~~~~~D~~~~~~   68 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--------------DNVYSFQLKDFSQES   68 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CCeEEEEccCCCHHH
Confidence            467899999999986   44456667999999987 445555444444322              234455556555433


Q ss_pred             cc-------ccCC-CccEEEEec
Q 027530          139 IK-------AVAP-PFDYIIGTD  153 (222)
Q Consensus       139 ~~-------~~~~-~fD~Ii~~d  153 (222)
                      ..       ..-+ ..|++|.+-
T Consensus        69 ~~~~~~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         69 IRHLFDAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             HHHHHHHHHHHhCCCCCEEEECC
Confidence            21       0113 789988764

>PRK08324 short chain dehydrogenase; Validated

Probab=85.75  E-value=7.2  Score=36.69  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|++||=.|++.|+   +...+++.|++|+++|. ++.++.+...+...               ..+.+...|..+..
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---------------~~v~~v~~Dvtd~~  483 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---------------DRALGVACDVTDEA  483 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---------------CcEEEEEecCCCHH
Confidence            3567899999975443   22234456889999997 44444333322210               25667777776554


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ...+.+|+||.+--+
T Consensus       484 ~v~~~~~~~~~~~g~iDvvI~~AG~  508 (681)
T PRK08324        484 AVQAAFEEAALAFGGVDIVVSNAGI  508 (681)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            321       112468999876543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=85.73  E-value=3  Score=33.99  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             CeEEEeCCCccHHHHHHHHh----------CCEEEEecchhhHHHH-HHHH
Q 027530           66 KRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLL-KRNV  105 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~----------g~~v~~~D~~~~l~~~-~~n~  105 (222)
                      -+|+|+|+|.|.++.-+...          ..+++.+|.+..+... ++.+
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L   70 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL   70 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence            58999999999988766542          1369999986544444 4443

; PDB: 4F3N_A 1ZKD_B.

>PRK05866 short chain dehydrogenase; Provisional

Probab=85.57  E-value=3.4  Score=34.35  Aligned_cols=79  Identities=23%  Similarity=0.330  Sum_probs=47.0

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.++++|=.|++.|+-.   ..+++.|++|++++. .+.++.+.+.+...+              ..+.+...|..+..
T Consensus        37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--------------~~~~~~~~Dl~d~~  102 (293)
T PRK05866         37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--------------GDAMAVPCDLSDLD  102 (293)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence            356789999998766522   234456889999997 444444444433211              24566777776654


Q ss_pred             ccc-------ccCCCccEEEEecc
Q 027530          138 HIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ...       ..-+..|++|.+--
T Consensus       103 ~v~~~~~~~~~~~g~id~li~~AG  126 (293)
T PRK05866        103 AVDALVADVEKRIGGVDILINNAG  126 (293)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11247899987643

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=85.47  E-value=8.2  Score=33.07  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=23.6

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027530           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ   94 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~   94 (222)
                      .+|.+||=.|+|. |+..+.+|+ +|++|++++.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~  215 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS  215 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            3678888899875 766666665 4888888875

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=85.38  E-value=5.8  Score=31.92  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=47.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|+. |.+|..++    +.|++|+.++. .+-++.+...+...+              .++.+...|..+.
T Consensus         9 ~~~~k~ilItGa~-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~Dl~d~   73 (259)
T PRK08213          9 DLSGKTALVTGGS-RGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--------------IDALWIAADVADE   73 (259)
T ss_pred             CcCCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEccCCCH
Confidence            4578899999954 44455544    45889999987 344444444333221              3566778787765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +...       ...++.|.||.+...
T Consensus        74 ~~i~~~~~~~~~~~~~id~vi~~ag~   99 (259)
T PRK08213         74 ADIERLAEETLERFGHVDILVNNAGA   99 (259)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            4331       112468998877543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=85.35  E-value=4.3  Score=32.87  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+-   ...++..|++|+.++. ++.++.+..++...+              .++.+...|..+.
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~   71 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--------------IEAHGYVCDVTDE   71 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCH
Confidence            345788999999987653   2334566899998886 444454444444222              3567777777765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-++.|++|.+--+
T Consensus        72 ~~~~~~~~~~~~~~~~id~li~~ag~   97 (265)
T PRK07097         72 DGVQAMVSQIEKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            4321       112468999876544

>PRK05876 short chain dehydrogenase; Provisional

Probab=85.32  E-value=4.7  Score=33.06  Aligned_cols=78  Identities=15%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+-   +..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+...
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~Dv~d~~~   69 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--------------FDVHGVMCDVRHREE   69 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEeCCCCCHHH
Confidence            5788999999887652   2334556899999987 334444333333221              246667777776543


Q ss_pred             cc-------ccCCCccEEEEecc
Q 027530          139 IK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~  154 (222)
                      ..       ..-++.|++|.+--
T Consensus        70 v~~~~~~~~~~~g~id~li~nAg   92 (275)
T PRK05876         70 VTHLADEAFRLLGHVDVVFSNAG   92 (275)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246899887654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=85.30  E-value=11  Score=31.58  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~--G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+|+=+|+|.  |+++..+++.|.+|+++.... .+    .+..+++.....       .....+........   ....
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~----~~~~~g~~~~~~-------~~~~~~~~~~~~~~---~~~~   70 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YE----AVRENGLQVDSV-------HGDFHLPPVQAYRS---AEDM   70 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HH----HHHhCCeEEEeC-------CCCeeecCceEEcc---hhhc
Confidence            5799999996  567778888899999887643 12    234444322110       01111111111111   0123


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..||+||.+-..|.   ...+++.+..++++++.++...
T Consensus        71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence            57999987744432   3567788888888888765543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.23  E-value=2.2  Score=35.08  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ   94 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g-------~~v~~~D~   94 (222)
                      ++..++|+|||.|.++..+++.-       ..++++|.
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR   55 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR   55 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence            45689999999999998888653       36899996

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK06125 short chain dehydrogenase; Provisional

Probab=85.20  E-value=6.4  Score=31.69  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=47.8

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+....             ..++.+...|+.+...
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~D~~~~~~   71 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-------------GVDVAVHALDLSSPEA   71 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCceEEEEecCCCHHH
Confidence            4678999999876642   2334566899999997 444444444443221             1356677777765443


Q ss_pred             cc---ccCCCccEEEEeccc
Q 027530          139 IK---AVAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~---~~~~~fD~Ii~~d~~  155 (222)
                      ..   ..-++.|++|.+.-.
T Consensus        72 ~~~~~~~~g~id~lv~~ag~   91 (259)
T PRK06125         72 REQLAAEAGDIDILVNNAGA   91 (259)
T ss_pred             HHHHHHHhCCCCEEEECCCC
Confidence            21   112578998876443

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.11  E-value=3.7  Score=33.09  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      +.++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+....            ...++.+...|..+...
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl~~~~~   72 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV------------AGARVLAVPADVTDAAS   72 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc------------CCceEEEEEccCCCHHH
Confidence            567899999987664   22345556899999997 444554444443211            12356777777776543


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       .-+..|++|.+--
T Consensus        73 ~~~~~~~~~~~~g~id~li~~ag   95 (260)
T PRK07063         73 VAAAVAAAEEAFGPLDVLVNNAG   95 (260)
T ss_pred             HHHHHHHHHHHhCCCcEEEECCC
Confidence            211       1247899887643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=85.04  E-value=4.6  Score=34.20  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=59.7

Q ss_pred             CCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ...+|.=||-|. |..+.-.| -+|++|+..|.+ +-++++..-..                 .++....   .+...+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----------------~rv~~~~---st~~~ie  226 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----------------GRVHTLY---STPSNIE  226 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----------------ceeEEEE---cCHHHHH
Confidence            334677888886 66554433 468999999984 44544443221                 2444443   2223333


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      ..-.+.|++|+.=.+--.....-..+...+.++||+.++
T Consensus       227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            335689999988666545555556777778889988765

>PRK06949 short chain dehydrogenase; Provisional

Probab=85.04  E-value=4.7  Score=32.31  Aligned_cols=80  Identities=29%  Similarity=0.415  Sum_probs=47.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..+++++||=.|++.| +|..    +++.|++|++++. ++.++.+...+....              .++.+...|..+
T Consensus         5 ~~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~   69 (258)
T PRK06949          5 INLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--------------GAAHVVSLDVTD   69 (258)
T ss_pred             cCCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEecCCC
Confidence            3467899999996544 3433    3345889999987 444444444433211              246677777765


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 027530          136 EDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .+...       ...++.|+||.+.-.
T Consensus        70 ~~~~~~~~~~~~~~~~~~d~li~~ag~   96 (258)
T PRK06949         70 YQSIKAAVAHAETEAGTIDILVNNSGV   96 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            43221       112468998876543

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.03  E-value=7.9  Score=30.87  Aligned_cols=94  Identities=28%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.+++    .+..               .+  ++..+....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---------------~~--~~~~~~~~~  191 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD---------------HV--IDYKEEDLE  191 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc---------------ee--ccCCcCCHH
Confidence            5678999999996 544444444 4778999987 444444432    1110               00  011111000


Q ss_pred             ----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                          ......+|+++.+-.-      ......+.+.++++|.++....
T Consensus       192 ~~~~~~~~~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         192 EELRLTGGGGADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             HHHHHhcCCCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence                1124579999854211      1456667778889998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06172 short chain dehydrogenase; Provisional

Probab=84.98  E-value=2.8  Score=33.61  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=48.0

Q ss_pred             CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+-.   ..+++.|++|++++. ++-++.+.+.+...              ..++.+...|..+...
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~   70 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA--------------GGEALFVACDVTRDAE   70 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEEcCCCCHHH
Confidence            56789999998765433   234456889999997 44444444444322              1356777777776543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       ..++.|+||.+--.
T Consensus        71 i~~~~~~~~~~~g~id~li~~ag~   94 (253)
T PRK06172         71 VKALVEQTIAAYGRLDYAFNNAGI   94 (253)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            211       12468999876543

>PRK07035 short chain dehydrogenase; Provisional

Probab=84.79  E-value=6  Score=31.62  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+++++||=.|++.|+-.   ..+++.|++|++++. .+.++.+.+.+...+              .++.+...|..+..
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   70 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--------------GKAEALACHIGEME   70 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEcCCCCHH
Confidence            456789999998877532   334556899999997 444444444333211              24556677776654


Q ss_pred             ccc-------ccCCCccEEEEecc
Q 027530          138 HIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ...       ..-++.|++|.+-.
T Consensus        71 ~~~~~~~~~~~~~~~id~li~~ag   94 (252)
T PRK07035         71 QIDALFAHIRERHGRLDILVNNAA   94 (252)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11246899886543

>PRK07814 short chain dehydrogenase; Provisional

Probab=84.63  E-value=16  Score=29.55  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=46.0

Q ss_pred             CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|++.| +|..    ++..|++|++++. ++.++.+.+.+...              ...+.+...|..+.
T Consensus         7 ~~~~~~vlItGasgg-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~   71 (263)
T PRK07814          7 RLDDQVAVVTGAGRG-LGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--------------GRRAHVVAADLAHP   71 (263)
T ss_pred             cCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCH
Confidence            357889999997554 4443    3456889999997 44444444333321              13566777777665


Q ss_pred             ccccc-------cCCCccEEEEec
Q 027530          137 DHIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d  153 (222)
                      .....       .-+++|+||.+-
T Consensus        72 ~~~~~~~~~~~~~~~~id~vi~~A   95 (263)
T PRK07814         72 EATAGLAGQAVEAFGRLDIVVNNV   95 (263)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECC
Confidence            43210       124689998754

>PRK08703 short chain dehydrogenase; Provisional

Probab=84.60  E-value=7.6  Score=30.78  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=27.4

Q ss_pred             CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHH
Q 027530           62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~  105 (222)
                      .++++++|=.||+.|+ |..    +++.|++|++++. ++.++.....+
T Consensus         3 ~l~~k~vlItG~sggi-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (239)
T PRK08703          3 TLSDKTILVTGASQGL-GEQVAKAYAAAGATVILVARHQKKLEKVYDAI   50 (239)
T ss_pred             CCCCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence            3567899999975544 433    4445889999997 44444443333

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.54  E-value=8.9  Score=29.69  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             CCCCCCeEEEeCC-Cc-cH-HHHHHHHhCCEEEEecc
Q 027530           61 SKLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ   94 (222)
Q Consensus        61 ~~~~~~~vLelGc-G~-G~-~~i~la~~g~~v~~~D~   94 (222)
                      ..+++++++=+|+ |. |. ....+++.|++|+.++.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R   60 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR   60 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            3567889999996 43 53 33445566888988876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06194 hypothetical protein; Provisional

Probab=84.48  E-value=3.5  Score=33.79  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=45.4

Q ss_pred             CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+-   ...+++.|++|+++|. .+.++.....+...              ..++.+...|..+...
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~d~~~   69 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ--------------GAEVLGVRTDVSDAAQ   69 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--------------CCeEEEEECCCCCHHH
Confidence            4578899888765542   2234456889999997 44444333323211              1356677777766543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       ..++.|+|+.+--+
T Consensus        70 ~~~~~~~~~~~~g~id~vi~~Ag~   93 (287)
T PRK06194         70 VEALADAALERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12468999876544

>PRK08589 short chain dehydrogenase; Validated

Probab=84.44  E-value=7.1  Score=31.83  Aligned_cols=79  Identities=23%  Similarity=0.329  Sum_probs=47.3

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++++|=.|++.|+   ++..+++.|++|++++.++.++.+.+.+...+              .++.+...|..+....
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~   69 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNG--------------GKAKAYHVDISDEQQV   69 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcC--------------CeEEEEEeecCCHHHH
Confidence            467899999988765   23345556899999987543333333333211              3567777777765432


Q ss_pred             c-------ccCCCccEEEEeccc
Q 027530          140 K-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       140 ~-------~~~~~fD~Ii~~d~~  155 (222)
                      .       ..-++.|++|.+--+
T Consensus        70 ~~~~~~~~~~~g~id~li~~Ag~   92 (272)
T PRK08589         70 KDFASEIKEQFGRVDVLFNNAGV   92 (272)
T ss_pred             HHHHHHHHHHcCCcCEEEECCCC
Confidence            1       112468998876543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=84.34  E-value=2.9  Score=32.79  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          161 LEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       161 ~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                      ...++..+.++|+|+|.+++....+...
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~   62 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIFIDDREIA   62 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred             HHHHHHHHHhhcCCCeeEEEEecchhhh
Confidence            4667888889999999998877655543

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=84.22  E-value=16  Score=27.81  Aligned_cols=46  Identities=20%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             cCCCccEEEEeccccC-------------ccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          142 VAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~-------------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      ...+||.||.+=|--.             ...+..+++.+.++|+++|.++|+.....+
T Consensus        72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p  130 (166)
T PF10354_consen   72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP  130 (166)
T ss_pred             cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            3578999998865533             124666888889999999999998876655

>PRK08267 short chain dehydrogenase; Provisional

Probab=84.02  E-value=12  Score=29.98  Aligned_cols=74  Identities=20%  Similarity=0.204  Sum_probs=43.6

Q ss_pred             CeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           66 KRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        66 ~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +++|=.|++.|+   ++..+++.|++|++++. .+.++.+...+.                ..++.+...|..+......
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~~v~~   65 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----------------AGNAWTGALDVTDRAAWDA   65 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----------------CCceEEEEecCCCHHHHHH
Confidence            468888877554   22334456889999986 444444333222                1356777888776543211


Q ss_pred             --------cCCCccEEEEeccc
Q 027530          142 --------VAPPFDYIIGTDVV  155 (222)
Q Consensus       142 --------~~~~fD~Ii~~d~~  155 (222)
                              ..+++|++|.+--.
T Consensus        66 ~~~~~~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         66 ALADFAAATGGRLDVLFNNAGI   87 (260)
T ss_pred             HHHHHHHHcCCCCCEEEECCCC
Confidence                    13578998876443

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.76  E-value=4.6  Score=32.38  Aligned_cols=78  Identities=24%  Similarity=0.207  Sum_probs=46.7

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|++++. ++.++.+.+.+...+              .++.+...|..+.+.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~   69 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--------------GEAVALAGDVRDEAY   69 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHHH
Confidence            467889989887664   22344556899999987 444444444443222              246667777765543


Q ss_pred             cc-------ccCCCccEEEEecc
Q 027530          139 IK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~  154 (222)
                      ..       ..-++.|++|.+--
T Consensus        70 ~~~~~~~~~~~~~~id~li~~ag   92 (254)
T PRK07478         70 AKALVALAVERFGGLDIAFNNAG   92 (254)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            21       11247898886643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=83.71  E-value=3.5  Score=35.40  Aligned_cols=41  Identities=27%  Similarity=0.400  Sum_probs=27.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~  102 (222)
                      ..+|.+||=.|+|. |...+.+|+ .|+ +|+++|. ++-++.++
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~  233 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR  233 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence            44678888899875 666655554 477 5999997 44555543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07062 short chain dehydrogenase; Provisional

Probab=83.66  E-value=8.4  Score=31.06  Aligned_cols=81  Identities=16%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+++++|=.|++.|+-   +..+++.|++|++++. ++.++.+.+.+....            ...++.+...|..+.+
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~   72 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF------------PGARLLAARCDVLDEA   72 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC------------CCceEEEEEecCCCHH
Confidence            45789999999887652   3344556899999987 444444444333221            0125667777777654


Q ss_pred             ccc-------ccCCCccEEEEecc
Q 027530          138 HIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ...       ..-+..|++|.+--
T Consensus        73 ~v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         73 DVAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            321       11256899887643

>PRK09291 short chain dehydrogenase; Provisional

Probab=83.63  E-value=5.9  Score=31.69  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=44.2

Q ss_pred             CCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           65 GKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|=.|++.|+ |..    +++.|++|++++. ++..+.++......              ...+.+...|+.+....
T Consensus         2 ~~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~   66 (257)
T PRK09291          2 SKTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--------------GLALRVEKLDLTDAIDR   66 (257)
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcceEEEeeCCCHHHH
Confidence            3578888886554 433    3456889998886 33333333322221              13567788888876443


Q ss_pred             cc-cCCCccEEEEecc
Q 027530          140 KA-VAPPFDYIIGTDV  154 (222)
Q Consensus       140 ~~-~~~~fD~Ii~~d~  154 (222)
                      .. .....|+||.+--
T Consensus        67 ~~~~~~~id~vi~~ag   82 (257)
T PRK09291         67 AQAAEWDVDVLLNNAG   82 (257)
T ss_pred             HHHhcCCCCEEEECCC
Confidence            22 2347899987643

>PRK06181 short chain dehydrogenase; Provisional

Probab=83.55  E-value=11  Score=30.24  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=42.3

Q ss_pred             CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++||=.|+..| +|..    ++..|.+|++++. ++..+.+.+.+...              ..++.+...|..+.....
T Consensus         2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dl~~~~~~~   66 (263)
T PRK06181          2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH--------------GGEALVVPTDVSDAEACE   66 (263)
T ss_pred             CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCHHHHH
Confidence            56887776544 4443    3455889999997 33444333333321              135667777776654321


Q ss_pred             c-------cCCCccEEEEeccc
Q 027530          141 A-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       141 ~-------~~~~fD~Ii~~d~~  155 (222)
                      .       .-...|+||.+--.
T Consensus        67 ~~~~~~~~~~~~id~vi~~ag~   88 (263)
T PRK06181         67 RLIEAAVARFGGIDILVNNAGI   88 (263)
T ss_pred             HHHHHHHHHcCCCCEEEECCCc
Confidence            1       11368999877443

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=83.54  E-value=3  Score=32.24  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=30.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhh
Q 027530           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNT  109 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~  109 (222)
                      ..|+.||||.=.-+..+...  +..++=+|.+++++.=++-+..++
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~  125 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESG  125 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTH
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCc
Confidence            38999999987777777664  446778888888887777776664

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PRK07890 short chain dehydrogenase; Provisional

Probab=83.46  E-value=6.3  Score=31.54  Aligned_cols=79  Identities=24%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++||=.|++.|+   ++..++..|++|+.++. ++-++.+...+...+              .++.+...|..+...
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~   68 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--------------RRALAVPTDITDEDQ   68 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--------------CceEEEecCCCCHHH
Confidence            356889999987664   23345556889999997 433444433333211              356777777765443


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 027530          139 IK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ..       ..-++.|+||.+.-.
T Consensus        69 ~~~~~~~~~~~~g~~d~vi~~ag~   92 (258)
T PRK07890         69 CANLVALALERFGRVDALVNNAFR   92 (258)
T ss_pred             HHHHHHHHHHHcCCccEEEECCcc
Confidence            21       012468998876543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=83.45  E-value=7.5  Score=31.15  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=47.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.++++|=.|++.|+   +...+++.|++|++++. ++.++.+...+...+              ..+.....|+.+.+
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~   71 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--------------IKAHAAPFNVTHKQ   71 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEecCCCCHH
Confidence            3568899999977664   22344456889999997 444444433333211              24566677777654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-+++|++|.+--.
T Consensus        72 ~~~~~~~~~~~~~~~id~vi~~ag~   96 (254)
T PRK08085         72 EVEAAIEHIEKDIGPIDVLINNAGI   96 (254)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCc
Confidence            321       112468999876543

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=83.39  E-value=4.6  Score=33.94  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=68.8

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---ccc-
Q 027530           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---HIK-  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~-  140 (222)
                      ..|+-||||.=.=+.-+-.. +..|.=+|+|++++.=++.+...+..          .....+++..|..+.+   .+. 
T Consensus        94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~----------~~~~~~~Va~Dl~~~dw~~~L~~  163 (297)
T COG3315          94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT----------PPAHRRLVAVDLREDDWPQALAA  163 (297)
T ss_pred             cEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC----------CCceEEEEeccccccchHHHHHh
Confidence            67999999943222222211 45788999999888777777665532          1235666665555322   111 


Q ss_pred             --ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 --AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 --~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        ......-++|+-.++..  .+....+++.|..++.||..++..+.
T Consensus       164 ~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         164 AGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             cCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence              11334446777777655  45577899999999999998887764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.32  E-value=16  Score=28.87  Aligned_cols=78  Identities=26%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEe-cc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +.++++|=.|+. |.+|..+    ++.|++|+.+ +. ++..+.+...+...              ..++.+...|..+.
T Consensus         3 ~~~~~ilI~Gas-g~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~   67 (247)
T PRK05565          3 LMGKVAIVTGAS-GGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--------------GGDAIAVKADVSSE   67 (247)
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--------------CCeEEEEECCCCCH
Confidence            466788888864 4445444    4458888887 86 44444433333321              13577788787765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-+.+|+||.+.-.
T Consensus        68 ~~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         68 EDVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence            43211       11368999876543

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.32  E-value=5.7  Score=33.16  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..++++++|=.|++.|+   ++..+++.|++|+.+|. + +..+.+...+...              ..++.+...|..+
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--------------g~~~~~~~~Dv~d   73 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA--------------GAKAVAVAGDISQ   73 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--------------CCeEEEEeCCCCC
Confidence            45788999999998875   33445567999999986 3 2343333333322              1356677777765


Q ss_pred             Cccccc------cCCCccEEEEeccc
Q 027530          136 EDHIKA------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~~------~~~~fD~Ii~~d~~  155 (222)
                      .+....      .-++.|++|.+--+
T Consensus        74 ~~~~~~~~~~~~~~g~iD~li~nAG~   99 (306)
T PRK07792         74 RATADELVATAVGLGGLDIVVNNAGI   99 (306)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            432210      02578998876433

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=83.11  E-value=5.7  Score=31.94  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=45.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+.+|..+....+.+.+...              ...+.+...|..+...
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~   70 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA--------------GGEALALTADLETYAG   70 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc--------------CCeEEEEEEeCCCHHH
Confidence            4578899999987665   2334455688999998744333333333221              1346667777776432


Q ss_pred             cc-------ccCCCccEEEEec
Q 027530          139 IK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d  153 (222)
                      ..       ...+.+|++|.+-
T Consensus        71 ~~~~~~~~~~~~~~id~lv~nA   92 (260)
T PRK12823         71 AQAAMAAAVEAFGRIDVLINNV   92 (260)
T ss_pred             HHHHHHHHHHHcCCCeEEEECC
Confidence            21       1124689988654

>PRK09242 tropinone reductase; Provisional

Probab=82.81  E-value=8.4  Score=30.91  Aligned_cols=81  Identities=12%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             CCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+-.   ..+++.|++|++++. .+.++....++....            ...++.+...|..+..
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dl~~~~   73 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF------------PEREVHGLAADVSDDE   73 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC------------CCCeEEEEECCCCCHH
Confidence            457899999998766422   334456889999987 445555544444321            0235666777776543


Q ss_pred             ccc-------ccCCCccEEEEecc
Q 027530          138 HIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ...       ..-++.|+|+.+--
T Consensus        74 ~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         74 DRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            221       11256899886653

>PRK06128 oxidoreductase; Provisional

Probab=82.55  E-value=19  Score=29.84  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h--hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      .++++++|=.|+..|+   ++..+++.|++|+.++.+ +  ..+...+.+...              ..++.+...|..+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~  117 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--------------GRKAVALPGDLKD  117 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--------------CCeEEEEecCCCC
Confidence            3577899999976654   223344568898877652 2  222222222221              1245667777765


Q ss_pred             Ccccc-------ccCCCccEEEEecc
Q 027530          136 EDHIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d~  154 (222)
                      .....       ..-++.|++|.+--
T Consensus       118 ~~~v~~~~~~~~~~~g~iD~lV~nAg  143 (300)
T PRK06128        118 EAFCRQLVERAVKELGGLDILVNIAG  143 (300)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            43221       11246899987654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=82.41  E-value=7.3  Score=31.03  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=42.9

Q ss_pred             CeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-
Q 027530           66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-  139 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  139 (222)
                      +++|=.|+. |.+|..++    +.|++|++++. ++..+.+...+...              ..++.+...|+.+.+.. 
T Consensus         2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~   66 (255)
T TIGR01963         2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--------------GGSVIYLVADVTKEDEIA   66 (255)
T ss_pred             CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEECCCCCHHHHH
Confidence            567778855 44454444    45889999987 44333333333221              13577788888765422 


Q ss_pred             ------cccCCCccEEEEeccc
Q 027530          140 ------KAVAPPFDYIIGTDVV  155 (222)
Q Consensus       140 ------~~~~~~fD~Ii~~d~~  155 (222)
                            .......|+|+.+...
T Consensus        67 ~~~~~~~~~~~~~d~vi~~a~~   88 (255)
T TIGR01963        67 DMIAAAAAEFGGLDILVNNAGI   88 (255)
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence                  1123458888876533

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=82.24  E-value=13  Score=32.09  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=23.3

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027530           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ   94 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~   94 (222)
                      +|.+||=.|+|. |+..+.+|+ +|++|+++|.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~  210 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR  210 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence            678898899875 666666665 4888888875

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=82.19  E-value=9.2  Score=30.63  Aligned_cols=79  Identities=22%  Similarity=0.343  Sum_probs=47.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|+.. -+|..+    ++.|++|++++. ++.++.+...+...+              .++.+...|..+.
T Consensus         7 ~~~~k~vlItGa~g-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--------------~~~~~~~~D~~~~   71 (255)
T PRK07523          7 DLTGRRALVTGSSQ-GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--------------LSAHALAFDVTDH   71 (255)
T ss_pred             CCCCCEEEEECCcc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--------------ceEEEEEccCCCH
Confidence            45789999999654 444444    345889999987 444444444443221              2466677777665


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-...|++|.+.-.
T Consensus        72 ~~~~~~~~~~~~~~~~~d~li~~ag~   97 (255)
T PRK07523         72 DAVRAAIDAFEAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            4321       112468988876544

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=82.14  E-value=8.4  Score=30.98  Aligned_cols=79  Identities=23%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++..+. +.+.+.++..              ..++.+...|..+...
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~   69 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL--------------GRKFHFITADLIQQKD   69 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc--------------CCeEEEEEeCCCCHHH
Confidence            3568999999988775   23345566999998876321 2222222211              1356777777776543


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 027530          139 IK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ..       ..-++.|++|.+--+
T Consensus        70 ~~~~~~~~~~~~g~iD~lv~~ag~   93 (251)
T PRK12481         70 IDSIVSQAVEVMGHIDILINNAGI   93 (251)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            21       112468998876543

>PLN02253 xanthoxin dehydrogenase

Probab=81.68  E-value=5.2  Score=32.67  Aligned_cols=77  Identities=17%  Similarity=0.184  Sum_probs=45.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..+.++++|=.|+..|+ |..    +++.|++|+++|. ++..+.+.+.+..               ..++.+...|..+
T Consensus        14 ~~l~~k~~lItGas~gI-G~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Dl~d   77 (280)
T PLN02253         14 QRLLGKVALVTGGATGI-GESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---------------EPNVCFFHCDVTV   77 (280)
T ss_pred             cccCCCEEEEECCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---------------CCceEEEEeecCC
Confidence            35678899999976554 433    4456889999986 3333333222210               1356777878776


Q ss_pred             Cccccc-------cCCCccEEEEec
Q 027530          136 EDHIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d  153 (222)
                      ......       .-++.|++|.+-
T Consensus        78 ~~~~~~~~~~~~~~~g~id~li~~A  102 (280)
T PLN02253         78 EDDVSRAVDFTVDKFGTLDIMVNNA  102 (280)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECC
Confidence            543211       124689988654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=81.42  E-value=11  Score=30.21  Aligned_cols=81  Identities=21%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             CCCCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+.+++||=.|++.|+-.   ..++..|++|+.++. .+.++.+...+...              ..++.+...|..+.
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~D~~~~   72 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--------------GGQAFACRCDITSE   72 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCH
Confidence            3457899999998776533   234456889998886 44444443333221              12456667777765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +...       ..-.++|+++.+-..
T Consensus        73 ~~i~~~~~~~~~~~~~~d~li~~ag~   98 (255)
T PRK06113         73 QELSALADFALSKLGKVDILVNNAGG   98 (255)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4321       112468988876443

>PRK07791 short chain dehydrogenase; Provisional

Probab=81.41  E-value=9.2  Score=31.53  Aligned_cols=79  Identities=22%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             CCCCeEEEeCCCccHHH---HHHHHhCCEEEEecc-h---------hhHHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 027530           63 LKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-I---------EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV  129 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~---i~la~~g~~v~~~D~-~---------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~  129 (222)
                      ++++++|=.|++.|+-.   ..+++.|++|+.+|. .         +.++.+.+.+...              ..++.+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~   69 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--------------GGEAVAN   69 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--------------CCceEEE
Confidence            46789999999887633   345567899988875 2         3233332323221              1345666


Q ss_pred             EeecCCCcccc-------ccCCCccEEEEeccc
Q 027530          130 ELDWGNEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       130 ~~d~~~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ..|..+.+...       ..-++.|++|.+--+
T Consensus        70 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         70 GDDIADWDGAANLVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            77776654321       112578998876544

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=81.30  E-value=12  Score=31.31  Aligned_cols=40  Identities=28%  Similarity=0.317  Sum_probs=26.8

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHH
Q 027530           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLL  101 (222)
Q Consensus        62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~  101 (222)
                      ..+|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.+
T Consensus       136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~  179 (325)
T TIGR02825       136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL  179 (325)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            456789998885 3 3666666665 4889888876 4444444

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.04  E-value=15  Score=34.48  Aligned_cols=72  Identities=14%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             eecCCCccc-cccCCCccEEEEec--cccCccCH-HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEE
Q 027530          131 LDWGNEDHI-KAVAPPFDYIIGTD--VVYAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  205 (222)
Q Consensus       131 ~d~~~~~~~-~~~~~~fD~Ii~~d--~~y~~~~~-~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~  205 (222)
                      +-|+|..+. +.....||+++.-.  +--+++++ ..+++.+.++++|+|++. ++. ..    ....+.+ ..||+++.
T Consensus       151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~-t~t-~a----~~vr~~l~~~GF~v~~  224 (662)
T PRK01747        151 LWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA-TFT-SA----GFVRRGLQEAGFTVRK  224 (662)
T ss_pred             EEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE-Eee-hH----HHHHHHHHHcCCeeee
Confidence            444554321 22235689988542  22233333 459999999999999764 332 11    1222223 46888876


Q ss_pred             ecC
Q 027530          206 VPK  208 (222)
Q Consensus       206 v~~  208 (222)
                      .+.
T Consensus       225 ~~~  227 (662)
T PRK01747        225 VKG  227 (662)
T ss_pred             cCC
Confidence            644

>PRK07102 short chain dehydrogenase; Provisional

Probab=80.98  E-value=9.1  Score=30.40  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=42.3

Q ss_pred             CeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           66 KRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +++|=.|+..| +|..    +++.|++|+++|. ++-.+...+++....             ..++.+...|..+.....
T Consensus         2 ~~vlItGas~g-iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~   67 (243)
T PRK07102          2 KKILIIGATSD-IARACARRYAAAGARLYLAARDVERLERLADDLRARG-------------AVAVSTHELDILDTASHA   67 (243)
T ss_pred             cEEEEEcCCcH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCeEEEEecCCCChHHHH
Confidence            57888886544 3443    4455889999997 443333333333221             236777887777654322


Q ss_pred             ----ccCCCccEEEEec
Q 027530          141 ----AVAPPFDYIIGTD  153 (222)
Q Consensus       141 ----~~~~~fD~Ii~~d  153 (222)
                          .....+|+++.+-
T Consensus        68 ~~~~~~~~~~d~vv~~a   84 (243)
T PRK07102         68 AFLDSLPALPDIVLIAV   84 (243)
T ss_pred             HHHHHHhhcCCEEEECC
Confidence                1123579888653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=80.95  E-value=6.3  Score=32.09  Aligned_cols=78  Identities=23%  Similarity=0.262  Sum_probs=46.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|++++. .+..+.+.+.+...+              .++.+...|..+..
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~   72 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--------------GEALAVKADVLDKE   72 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECCCCCHH
Confidence            4577899999987664   22344456889999997 444444433333221              24666777766543


Q ss_pred             cccc-------cCCCccEEEEec
Q 027530          138 HIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d  153 (222)
                      ....       .-+++|++|.+-
T Consensus        73 ~v~~~~~~~~~~~g~id~li~~a   95 (278)
T PRK08277         73 SLEQARQQILEDFGPCDILINGA   95 (278)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECC
Confidence            3211       124789988763

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=80.77  E-value=7  Score=31.08  Aligned_cols=76  Identities=25%  Similarity=0.302  Sum_probs=44.2

Q ss_pred             CCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      +++++|=.|+..| +|..    +++.|++|++++. .+....+...+...              ..++.+...|..+.+.
T Consensus         2 ~~~~ilItGas~~-iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~d~~~~~~   66 (250)
T TIGR03206         2 KDKTAIVTGGGGG-IGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--------------GGNAQAFACDITDRDS   66 (250)
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--------------CCcEEEEEcCCCCHHH
Confidence            5688999997654 3433    3445889999987 33444444433322              1356777777766543


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       ..++.|++|.+-.
T Consensus        67 ~~~~~~~~~~~~~~~d~vi~~ag   89 (250)
T TIGR03206        67 VDTAVAAAEQALGPVDVLVNNAG   89 (250)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1246798876653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=80.68  E-value=27  Score=27.90  Aligned_cols=101  Identities=15%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             CeEEEeCCCcc----HHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-
Q 027530           66 KRVIELGAGCG----VAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-  137 (222)
Q Consensus        66 ~~vLelGcG~G----~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  137 (222)
                      +.++|..|+.|    .+++++|.  -|.+++.+-. .+.+...++.+...+..            +.++|+.   ++.. 
T Consensus        43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~------------~~vEfvv---g~~~e  107 (218)
T PF07279_consen   43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS------------DVVEFVV---GEAPE  107 (218)
T ss_pred             eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc------------ccceEEe---cCCHH
Confidence            57999976644    23343332  2667666654 44556666666544421            3446554   3321 


Q ss_pred             cccccCCCccEEEEeccccCccCHH-HHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~-~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .....-...|+++. |+=  ..++. .+++.+.  ++|.|.+++++....
T Consensus       108 ~~~~~~~~iDF~vV-Dc~--~~d~~~~vl~~~~--~~~~GaVVV~~Na~~  152 (218)
T PF07279_consen  108 EVMPGLKGIDFVVV-DCK--REDFAARVLRAAK--LSPRGAVVVCYNAFS  152 (218)
T ss_pred             HHHhhccCCCEEEE-eCC--chhHHHHHHHHhc--cCCCceEEEEecccc
Confidence            11112356888874 332  23333 5555433  667888888876533

The function of this family is unknown.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=80.47  E-value=8.6  Score=31.78  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=41.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      ....+..|||--+|+|..++++.++|-..++.|+ ++.++.+.+.+....
T Consensus       219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~  268 (302)
T COG0863         219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL  268 (302)
T ss_pred             cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence            3557889999999999999999999999999998 678888877766543

>PRK06720 hypothetical protein; Provisional

Probab=80.34  E-value=13  Score=28.31  Aligned_cols=80  Identities=24%  Similarity=0.281  Sum_probs=46.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++.+|=.|.+.|+   +...+++.|++|+.+|. .+.++.+.+.+...+              ..+.+...|..+...
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~~   79 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--------------GEALFVSYDMEKQGD   79 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHHH
Confidence            467889999988765   33345567899999997 344443333333111              234556667665432


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 027530          139 IK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ..       ..-+..|+++.+--++
T Consensus        80 v~~~v~~~~~~~G~iDilVnnAG~~  104 (169)
T PRK06720         80 WQRVISITLNAFSRIDMLFQNAGLY  104 (169)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcC
Confidence            21       1124688888774443

>PRK05872 short chain dehydrogenase; Provisional

Probab=80.20  E-value=8  Score=32.05  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+   ++..+++.|++|+.++. .+.++.+.+.+..               ...+.....|+.+.
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---------------~~~~~~~~~Dv~d~   69 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---------------DDRVLTVVADVTDL   69 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---------------CCcEEEEEecCCCH
Confidence            34678999999987764   33344556899999987 4444333322210               12345555777765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +...       ..-++.|++|.+--+
T Consensus        70 ~~v~~~~~~~~~~~g~id~vI~nAG~   95 (296)
T PRK05872         70 AAMQAAAEEAVERFGGIDVVVANAGI   95 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            4321       112578999877544

>PRK08303 short chain dehydrogenase; Provisional

Probab=80.08  E-value=10  Score=31.76  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=24.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ   94 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~   94 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++.
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r   40 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR   40 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence            4578999999998775   23345556899988875

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.01  E-value=7.7  Score=30.71  Aligned_cols=76  Identities=24%  Similarity=0.194  Sum_probs=43.5

Q ss_pred             CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|+ +|.+|..+    +..|++|++++. ++..+.....+...              ..++.+...|..+..
T Consensus         5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~   69 (239)
T PRK07666          5 LQGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--------------GVKVVIATADVSDYE   69 (239)
T ss_pred             CCCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--------------CCeEEEEECCCCCHH
Confidence            45678999996 45555544    345889999987 44333333333221              135666776665543


Q ss_pred             cccc-------cCCCccEEEEec
Q 027530          138 HIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d  153 (222)
                      ....       ..+..|+||.+-
T Consensus        70 ~~~~~~~~~~~~~~~id~vi~~a   92 (239)
T PRK07666         70 EVTAAIEQLKNELGSIDILINNA   92 (239)
T ss_pred             HHHHHHHHHHHHcCCccEEEEcC
Confidence            2210       124689888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-28
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	1e-04
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score =  107 bits (268), Expect = 2e-28
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 17  EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76
             L   +Q           + VW  +      L          P  + GK V ELGAG G
Sbjct: 39  APLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAG 91

Query: 77  VAGFGMALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW 133
           +      L G + V+ TD    E+L  L+ N+  +T+              S + V   W
Sbjct: 92  LVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKR---ASPKVVPYRW 148

Query: 134 GN---EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL-----SGPKTTILLGYEIR 185
           G+             F  ++  D++      + LL+++  L     + P    L+ +   
Sbjct: 149 GDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHH 208

Query: 186 STSVHEQMLQ 195
              + E+ L 
Sbjct: 209 RPHLAERDLA 218

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 17/104 (16%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA--LLGCNVITTD-QIEVLPLLKRNVEWNTSRI 112
                   +  R+ +LGAG G AG  +A  L    V   +   E+    +R++E      
Sbjct: 29  ASLVADD-RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELP---- 83

Query: 113 SQMNPGSGNLLGSIQAVELDW--GNEDHIKAVAPP--FDYIIGT 152
                 +      I+ +E D     +  ++A  P   F ++I  
Sbjct: 84  -----DNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTD-QIEVLPLLKRNVEWNTSRIS 113
            +F    ++  ++I+L +G G+    ++      ++  + Q  +  + KR+V +N     
Sbjct: 41  AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----- 95

Query: 114 QMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 152
                   L   I+ +E D      +       D +   
Sbjct: 96  -------QLEDQIEIIEYDLKKITDLIP-KERADIVTCN 126

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSG 120
           ++GK V +LGAG GV  +G  LLG   +   ++  E + +L  N+     +         
Sbjct: 48  IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS 107

Query: 121 NLLGSIQAVELD--WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP 163
                +  V ++  +G++               +DVVY+ HL +P
Sbjct: 108 EFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKP 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 9e-04
 Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 62/247 (25%)

Query: 24  QFSQDPNSKHLGTT--------VWDASVVFVKYL---EKNCRKGRFCPSKLKGKRVIELG 72
               +     + T         +++ + VF KY     +   K R    +L+  + + + 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155

Query: 73  AGCGVAGFG---MALLGCNVITTDQIEVLPLLKRNVEW------NTSR---------ISQ 114
              GV G G   +AL  C        +V   +   + W      N+           + Q
Sbjct: 156 --DGVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 115 MNPGSGNLLGSIQAVEL--DWGNE---DHIKAVAPPFDYIIGTDVVYAEHLLEP------ 163
           ++P   +       ++L            +K+       ++  +V  A+           
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCK 267

Query: 164 -LLQT-----IFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK---LVPKAKESTM 214
            LL T        LS   TT +       T   +++  +     + +   L  +      
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--- 324

Query: 215 WGNPLGL 221
             NP  L
Sbjct: 325 -TNPRRL 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.89
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.79
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.76
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.71
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.7
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.69
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.68
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.68
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.68
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.68
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.67
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.66
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.66
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.66
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.66
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.66
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.66
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.66
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.65
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.65
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.65
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.64
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.63
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.63
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.63
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.63
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.63
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.63
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.62
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.62
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.62
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.62
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.61
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.6
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.6
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.6
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.6
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.6
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.6
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.6
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.59
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.59
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.59
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.59
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.59
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.59
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.58
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.57
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.57
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.56
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.56
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.56
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.56
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.56
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.56
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.56
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.56
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.55
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.54
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.54
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.54
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.54
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.54
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.53
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.53
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.53
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.53
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.53
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.53
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.52
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.52
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.52
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.52
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.52
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.52
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.52
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.52
3ocj_A	305	Putative exported protein; structural genomics, PS	99.52
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.52
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.51
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.51
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.51
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.51
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.5
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.5
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.5
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.5
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.5
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.49
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.49
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.49
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.49
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.49
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.49
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.49
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.48
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.48
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.48
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.48
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.48
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.48
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.47
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.47
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.47
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.46
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.46
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.46
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.46
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.46
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.46
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.46
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.46
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.45
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.45
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.45
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.45
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.44
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.43
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.43
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.43
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.43
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.43
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.42
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.42
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.42
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.42
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.41
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.41
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.41
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.4
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.39
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.39
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.38
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.38
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.38
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.37
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.37
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.37
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.37
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.36
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.35
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.34
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.34
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.33
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.33
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.33
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.32
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.31
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.31
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.31
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.3
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.3
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.28
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.27
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.27
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.26
2o07_A	304	Spermidine synthase; structural genomics, structur	99.26
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.25
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.25
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.24
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.24
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.24
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.23
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.23
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.22
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.22
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.21
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.21
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.21
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.21
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.19
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.18
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.17
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.16
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.16
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.15
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.14
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.13
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.12
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.12
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.12
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.08
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.08
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.08
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.06
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.06
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.05
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.04
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.03
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.03
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.02
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.02
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.02
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.0
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.98
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.94
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.94
3lkd_A	542	Type I restriction-modification system methyltrans	98.87
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.86
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.84
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.82
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.78
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.78
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.76
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.76
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.73
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.7
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.7
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.67
3khk_A	544	Type I restriction-modification system methylation	98.63
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.49
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.41
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.37
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.33
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.31
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.29
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.13
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.11
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.1
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.09
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.99
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.95
3ufb_A	530	Type I restriction-modification system methyltran	97.94
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.86
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.81
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.79
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.59
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.47
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.42
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.38
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.27
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.2
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.2
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.02
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.94
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.87
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.27
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.2
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.19
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.14
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.07
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.97
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.92
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.72
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.57
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.47
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.37
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.87
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.85
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.64
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.58
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.56
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.44
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.44
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.3
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.24
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.03
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	94.01
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.9
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.88
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.75
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.72
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	93.68
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.64
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.58
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.46
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.46
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.41
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.18
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.08
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.02
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.72
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.72
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.68
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.41
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.39
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.38
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.36
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.32
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.29
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.11
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	92.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	91.9
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.89
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.84
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	91.83
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	91.8
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	91.78
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.73
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.72
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.53
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.45
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.28
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	91.24
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.17
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.15
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.06
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.06
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.04
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.95
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	90.94
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	90.84
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	90.83
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.81
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	90.72
1xhl_A	297	Short-chain dehydrogenase/reductase family member	90.63
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	90.55
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.52
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	90.41
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.41
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	90.3
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.28
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.24
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	90.18
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.15
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.1
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	90.04
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.03
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.96
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	89.95
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	89.93
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	89.88
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	89.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	89.84
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.66
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	89.61
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	89.56
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.5
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	89.44
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.44
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	89.29
3me5_A	482	Cytosine-specific methyltransferase; structural ge	89.23
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	89.22
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	89.18
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.16
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.14
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	89.1
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	89.07
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.05
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.03
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	88.92
1xkq_A	280	Short-chain reductase family member (5D234); parra	88.83
1xq1_A	266	Putative tropinone reducatse; structural genomics,	88.82
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	88.81
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	88.78
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	88.77
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.63
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.41
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.25
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	88.16
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.12
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	88.06
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.06
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	87.99
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	87.89
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	87.85
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.83
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	87.82
3cxt_A	291	Dehydrogenase with different specificities; rossma	87.8
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	87.8
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.8
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	87.62
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.61
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	87.59
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	87.5
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	87.47
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.39
1spx_A	278	Short-chain reductase family member (5L265); paral	87.34
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	87.33
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	87.3
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.26
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	87.26
4dqx_A	277	Probable oxidoreductase protein; structural genomi	87.21
3rih_A	293	Short chain dehydrogenase or reductase; structural	87.2
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	87.19
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	87.18
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	87.07
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	86.89
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	86.86
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	86.81
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	86.77
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	86.75
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	86.68
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	86.64
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	86.58
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.53
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	86.31
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	86.28
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	86.23
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	86.21
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	86.1
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	86.09
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.08
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	86.06
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	85.91
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	85.89
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	85.89
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	85.77
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	85.77
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	85.76
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	85.75
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	85.68
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	85.62
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	85.52
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	85.42
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.25
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	85.14
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	85.12
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	85.11
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	85.09
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	85.04
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	85.01
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	84.99
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	84.92
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	84.91
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.89
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	84.82
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	84.78
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	84.78
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	84.69
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	84.6
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	84.59
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	84.4
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	84.39
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	84.38

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.89  E-value=2.8e-22  Score=165.39  Aligned_cols=176  Identities=19%  Similarity=0.272  Sum_probs=119.3

Q ss_pred             CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-h-hhHHHHHHHHHH
Q 027530           31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-I-EVLPLLKRNVEW  107 (222)
Q Consensus        31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~-~~l~~~~~n~~~  107 (222)
                      ...+|..+|+++..|++++...       ....++++|||||||+|.+++.+++.|+ +|+++|+ + ++++.+++|+..
T Consensus        53 ~~~~g~~~~~~~~~l~~~l~~~-------~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~  125 (281)
T 3bzb_A           53 HPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE  125 (281)
T ss_dssp             ---------CHHHHHHHHHHHC-------GGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCCceeecHHHHHHHHHHhc-------chhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence            4567889999999999999876       3446788999999999999999999988 8999999 5 599999999965


Q ss_pred             hhccccccCCCCCCCCCceEEEEeecCCCccccc---cCCCccEEEEeccccCccCHHHHHHHHHHhcC---C--CeEEE
Q 027530          108 NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG---P--KTTIL  179 (222)
Q Consensus       108 n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~---~--~g~~~  179 (222)
                      |........   .....++++..++|++......   ..++||+|++++++|+......+++.+.++|+   |  ||+++
T Consensus       126 N~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~  202 (281)
T 3bzb_A          126 HTANSCSSE---TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVAL  202 (281)
T ss_dssp             TCC-------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred             hhhhhcccc---cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence            532100000   0001368899999997532111   25789999999999999999999999999999   9  99988


Q ss_pred             EEEEEcChh---HHHHHHHHHh-cC-CeEEEec-CCCCCcccC
Q 027530          180 LGYEIRSTS---VHEQMLQMWK-SN-FNVKLVP-KAKESTMWG  216 (222)
Q Consensus       180 l~~~~r~~~---~~~~f~~~~~-~~-~~v~~v~-~~~~~~~~~  216 (222)
                      +....+...   ....|++.++ .+ |.++.+. ...+...|.
T Consensus       203 v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~  245 (281)
T 3bzb_A          203 VTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFP  245 (281)
T ss_dssp             EEECC--------CTHHHHHHHHSTTEEEEEEECCC-------
T ss_pred             EEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccccccccc
Confidence            876654431   2356776664 58 9988773 333344443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.79  E-value=1.1e-18  Score=141.93  Aligned_cols=158  Identities=15%  Similarity=0.201  Sum_probs=119.1

Q ss_pred             EcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-h
Q 027530           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-I   95 (222)
Q Consensus        18 ~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~   95 (222)
                      +....+.+.|++..+..+..    +.+|+.|+.          ..+++.+|||+|||+|..++.+++.+. +|+++|+ +
T Consensus        17 ~~~~~~~i~q~~~~~~~~~d----~~ll~~~~~----------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~   82 (259)
T 3lpm_A           17 LLAENLRIIQSPSVFSFSID----AVLLAKFSY----------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQE   82 (259)
T ss_dssp             ETTTTEEEEEBTTTBCCCHH----HHHHHHHCC----------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSH
T ss_pred             ccCCCEEEEeCCCCccCcHH----HHHHHHHhc----------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCH
Confidence            56788999999988888866    788888762          112578999999999999999998876 8999999 6


Q ss_pred             hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc-----------------
Q 027530           96 EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----------------  158 (222)
Q Consensus        96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-----------------  158 (222)
                      ++++.+++|+..|++.            .++++...|+.+... ....++||+|+++++++..                 
T Consensus        83 ~~~~~a~~n~~~~~~~------------~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~  149 (259)
T 3lpm_A           83 RLADMAKRSVAYNQLE------------DQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH  149 (259)
T ss_dssp             HHHHHHHHHHHHTTCT------------TTEEEECSCGGGGGG-TSCTTCEEEEEECCCC--------------------
T ss_pred             HHHHHHHHHHHHCCCc------------ccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhc
Confidence            6999999999998753            478999877654422 1225789999999988654                 


Q ss_pred             ---cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEE
Q 027530          159 ---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       159 ---~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~  205 (222)
                         .....+++.+.++|+|||.+++......   ...+.+.++ .+|.+..
T Consensus       150 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          150 EVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             ---HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEE
T ss_pred             cccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEE
Confidence               2245699999999999999999764332   345555554 4666544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.76  E-value=5.1e-17  Score=139.19  Aligned_cols=155  Identities=20%  Similarity=0.294  Sum_probs=122.3

Q ss_pred             CCCcceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC
Q 027530            8 SPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC   87 (222)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~   87 (222)
                      .+...++++.+.+..+++...++.+. +..+.+.+..+.+++.....     ....++.+|||+|||+|..++.+++.++
T Consensus       183 ~~~w~~~~~~~~g~~~~~~~~pgvFs-~~~~d~~t~~ll~~l~~~l~-----~~~~~~~~VLDlGcG~G~~~~~la~~g~  256 (381)
T 3dmg_A          183 PSLWRAFSARILGAEYTFHHLPGVFS-AGKVDPASLLLLEALQERLG-----PEGVRGRQVLDLGAGYGALTLPLARMGA  256 (381)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTCTT-TTSCCHHHHHHHHHHHHHHC-----TTTTTTCEEEEETCTTSTTHHHHHHTTC
T ss_pred             ccccceeeEEecCceEEEEeCCCcee-CCCCCHHHHHHHHHHHHhhc-----ccCCCCCEEEEEeeeCCHHHHHHHHcCC
Confidence            34556788889999999999996544 33455778888888865421     1234678999999999999999999999


Q ss_pred             EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC-----ccCH
Q 027530           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLL  161 (222)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~-----~~~~  161 (222)
                      +|+++|+ +.+++.+++|+..|+.              .+++...|+.+..   ...++||+|++++++++     ....
T Consensus       257 ~V~gvDis~~al~~A~~n~~~~~~--------------~v~~~~~D~~~~~---~~~~~fD~Ii~npp~~~~~~~~~~~~  319 (381)
T 3dmg_A          257 EVVGVEDDLASVLSLQKGLEANAL--------------KAQALHSDVDEAL---TEEARFDIIVTNPPFHVGGAVILDVA  319 (381)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTC--------------CCEEEECSTTTTS---CTTCCEEEEEECCCCCTTCSSCCHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--------------CeEEEEcchhhcc---ccCCCeEEEEECCchhhcccccHHHH
Confidence            9999999 5699999999998873              3677776665432   22478999999999876     4556


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          162 EPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       162 ~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..+++.+.++|+|||.++++....
T Consensus       320 ~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          320 QAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             HHHHHHHHHhcCcCcEEEEEEcCC
Confidence            789999999999999999987543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.72  E-value=5.8e-16  Score=119.25  Aligned_cols=150  Identities=19%  Similarity=0.249  Sum_probs=110.8

Q ss_pred             CcceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEE
Q 027530           10 STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNV   89 (222)
Q Consensus        10 ~~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v   89 (222)
                      ..+.+.-.+.+..+.+...++.+.... ....+..+.+++           ...++.+|||+|||+|..++.+++.+.+|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-----------~~~~~~~vLdiG~G~G~~~~~~~~~~~~v   77 (194)
T 1dus_A           10 DVKIVEDILRGKKLKFKTDSGVFSYGK-VDKGTKILVENV-----------VVDKDDDILDLGCGYGVIGIALADEVKST   77 (194)
T ss_dssp             CEEEEEEEETTEEEEEEEETTSTTTTS-CCHHHHHHHHHC-----------CCCTTCEEEEETCTTSHHHHHHGGGSSEE
T ss_pred             cccEEeeecCCCceEEEeCCCcCCccc-cchHHHHHHHHc-----------ccCCCCeEEEeCCCCCHHHHHHHHcCCeE
Confidence            334566778899998877664433331 112233444433           22367899999999999999999888899


Q ss_pred             EEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC-ccCHHHHHHH
Q 027530           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPLLQT  167 (222)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~  167 (222)
                      +++|+ +++++.+++|+..++..           ..++++...|+.+..    ..++||+|+++.++++ ......+++.
T Consensus        78 ~~~D~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~l~~  142 (194)
T 1dus_A           78 TMADINRRAIKLAKENIKLNNLD-----------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEE  142 (194)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCT-----------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCC-----------ccceEEEECchhccc----ccCCceEEEECCCcccchhHHHHHHHH
Confidence            99999 66999999999887642           113888887776532    2568999999888765 4567789999


Q ss_pred             HHHhcCCCeEEEEEEEEcC
Q 027530          168 IFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       168 ~~~~l~~~g~~~l~~~~r~  186 (222)
                      +.++|+|||.+++....+.
T Consensus       143 ~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          143 GKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             HHHHEEEEEEEEEEEESTH
T ss_pred             HHHHcCCCCEEEEEECCCC
Confidence            9999999999999887653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.71  E-value=4.1e-16  Score=124.06  Aligned_cols=129  Identities=22%  Similarity=0.303  Sum_probs=98.5

Q ss_pred             CCCCeEEEeCCC-ccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAG-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG-~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+||| +|..++.+++. +.+|+++|+ +++++.+++|+..++.              ++++...|+......
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~v~~~~~d~~~~~~~  119 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--------------NVRLVKSNGGIIKGV  119 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--------------CCEEEECSSCSSTTT
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEeCCchhhhhc
Confidence            467899999999 99999999988 889999999 6699999999998862              678888776433322


Q ss_pred             cccCCCccEEEEeccccCccC-------------------HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-c
Q 027530          140 KAVAPPFDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-S  199 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~-------------------~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~  199 (222)
                        .+++||+|+++++++....                   ...+++.+.++|+|||.+++..+.+. .....+.+.++ .
T Consensus       120 --~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~  196 (230)
T 3evz_A          120 --VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKL  196 (230)
T ss_dssp             --CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHT
T ss_pred             --ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHc
Confidence              2478999999988765332                   47789999999999999998776543 23456666654 5


Q ss_pred             CCeEEEecC
Q 027530          200 NFNVKLVPK  208 (222)
Q Consensus       200 ~~~v~~v~~  208 (222)
                      +|.++.+..
T Consensus       197 g~~~~~~~~  205 (230)
T 3evz_A          197 GYSVKDIKF  205 (230)
T ss_dssp             TCEEEEEEE
T ss_pred             CCceEEEEe
Confidence            888776643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.70  E-value=4.6e-16  Score=133.09  Aligned_cols=148  Identities=12%  Similarity=0.097  Sum_probs=109.6

Q ss_pred             ceEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEE
Q 027530           12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNV   89 (222)
Q Consensus        12 ~~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v   89 (222)
                      ....+.+.+..+++.+.|+.+... .+..++.++.+++.           ...+.+|||+|||+|.+++.+++.  +.+|
T Consensus       182 ~~~~~~~~~~~~~~~~~pg~Fs~~-~~d~~~~~ll~~l~-----------~~~~~~VLDlGcG~G~~s~~la~~~p~~~V  249 (375)
T 4dcm_A          182 QTVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLP-----------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKV  249 (375)
T ss_dssp             SCEEEEETTTTEEEEECTTCTTCS-SCCHHHHHHHHTCC-----------CSCCSEEEEETCTTCHHHHHHHHHCTTCEE
T ss_pred             CceEEEecCCceEEEeCCCcccCC-cccHHHHHHHHhCc-----------ccCCCeEEEEeCcchHHHHHHHHHCCCCEE
Confidence            356778888999999999765542 34444555555442           234579999999999999999998  5689


Q ss_pred             EEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc-----cCHHH
Q 027530           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEP  163 (222)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-----~~~~~  163 (222)
                      +++|+ +.+++.+++|+..|++.          ...++++...|..+.    ...++||+|+++++++..     .....
T Consensus       250 ~gvD~s~~al~~Ar~n~~~ngl~----------~~~~v~~~~~D~~~~----~~~~~fD~Ii~nppfh~~~~~~~~~~~~  315 (375)
T 4dcm_A          250 VFVDESPMAVASSRLNVETNMPE----------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWE  315 (375)
T ss_dssp             EEEESCHHHHHHHHHHHHHHCGG----------GGGGEEEEECSTTTT----CCTTCEEEEEECCCC-------CCHHHH
T ss_pred             EEEECcHHHHHHHHHHHHHcCCC----------cCceEEEEechhhcc----CCCCCeeEEEECCCcccCcccCHHHHHH
Confidence            99999 56999999999998753          112567777665542    235689999999998752     22346


Q ss_pred             HHHHHHHhcCCCeEEEEEEEEc
Q 027530          164 LLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       164 ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +++.+.++|+|||.++++....
T Consensus       316 ~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          316 MFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             HHHHHHHHEEEEEEEEEEEETT
T ss_pred             HHHHHHHhCCCCcEEEEEEECC
Confidence            8999999999999999977543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.70  E-value=5e-17  Score=138.60  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=87.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++|++|||||||+|++++.+|+.|+ +|+++|.+++++.|+++++.|++.            .+|++...+..+..  
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~------------~~i~~i~~~~~~~~--  145 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLE------------DRVHVLPGPVETVE--  145 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCT------------TTEEEEESCTTTCC--
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCC------------ceEEEEeeeeeeec--
Confidence            457899999999999999999999998 699999977999999999999853            68999997665543  


Q ss_pred             cccCCCccEEEE---eccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          140 KAVAPPFDYIIG---TDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       140 ~~~~~~fD~Ii~---~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                        .+++||+||+   ...+.+...++.++....++|+|+|.++
T Consensus       146 --lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          146 --LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             --CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             --CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence              2478999998   4455667789999999999999999876

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=2.6e-16  Score=126.22  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      .|+.+..+.+.+.           ..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++..++.      
T Consensus         6 ~~~~~~~~~~~~~-----------~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------   68 (239)
T 1xxl_A            6 HHHSLGLMIKTAE-----------CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV------   68 (239)
T ss_dssp             CHHHHHHHHHHHT-----------CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC------
T ss_pred             cCCCcchHHHHhC-----------cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            5677777777764           336789999999999999999999999999999 6699999999987763      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                             .++.+...|+.+   .+..+++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus        69 -------~~v~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           69 -------ENVRFQQGTAES---LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             -------CSEEEEECBTTB---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -------CCeEEEeccccc---CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence                   368888876643   3344678999999999999999999999999999999999997654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.69  E-value=3.7e-16  Score=126.85  Aligned_cols=154  Identities=19%  Similarity=0.239  Sum_probs=112.3

Q ss_pred             eEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHH
Q 027530           21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLP   99 (222)
Q Consensus        21 ~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~   99 (222)
                      ..+.+..+| +..+|...++.+..+.+++...         ..++++|||+|||+|.+++.+++.|++|+++|+ +.+++
T Consensus        87 ~~~~~~l~p-~~~fgtg~~~tt~~~~~~l~~~---------~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~  156 (254)
T 2nxc_A           87 AEIPLVIEP-GMAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLP  156 (254)
T ss_dssp             SSEEEECCC-C-----CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             CceEEEECC-CccccCCCCHHHHHHHHHHHHh---------cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHH
Confidence            345566677 3455666678888888888654         235789999999999999999999999999999 66999


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          100 LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .+++|+..|+.             . +++...++.+.    ....+||+|+++.+.   +....+++.+.++|+|||.++
T Consensus       157 ~a~~n~~~~~~-------------~-v~~~~~d~~~~----~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~li  215 (254)
T 2nxc_A          157 QAEANAKRNGV-------------R-PRFLEGSLEAA----LPFGPFDLLVANLYA---ELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             HHHHHHHHTTC-------------C-CEEEESCHHHH----GGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHcCC-------------c-EEEEECChhhc----CcCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEE
Confidence            99999998873             1 66776554331    124689999987543   346789999999999999999


Q ss_pred             EEEEEcChhHHHHHHHHHh-cCCeEEEec
Q 027530          180 LGYEIRSTSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       180 l~~~~r~~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      ++......  ...+.+.++ .+|.+..+.
T Consensus       216 ls~~~~~~--~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          216 LTGILKDR--APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             EEEEEGGG--HHHHHHHHHHTTCEEEEEE
T ss_pred             EEeeccCC--HHHHHHHHHHCCCEEEEEe
Confidence            98765543  355555554 578876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=9.2e-17  Score=124.35  Aligned_cols=110  Identities=15%  Similarity=0.190  Sum_probs=89.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++++|||+|||+|..++.++..++ +|+++|+ +++++.+++|++.++.             .++++.+.|+.+... .
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~~~-~  108 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-------------SGATLRRGAVAAVVA-A  108 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-------------SCEEEEESCHHHHHH-H
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-------------CceEEEEccHHHHHh-h
Confidence            5788999999999999998887776 6999999 6699999999998873             378888866643311 1


Q ss_pred             ccCCCccEEEEeccccCc-cCHHHHHHHHHH--hcCCCeEEEEEEEEcC
Q 027530          141 AVAPPFDYIIGTDVVYAE-HLLEPLLQTIFA--LSGPKTTILLGYEIRS  186 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~-~~~~~ll~~~~~--~l~~~g~~~l~~~~r~  186 (222)
                      ...++||+|++++++++. .....+++.+.+  +|+|||.+++....+.
T Consensus       109 ~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          109 GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            125789999998886553 678889999999  9999999999877554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=5e-16  Score=119.57  Aligned_cols=131  Identities=13%  Similarity=-0.024  Sum_probs=89.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.++.             .++++...+..+..  .
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~v~~~~~~~~~l~--~   84 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-------------ENTELILDGHENLD--H   84 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEEESCGGGGG--G
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEeCcHHHHH--h
Confidence            346789999999999999999999889999999 6699999999998873             36777774433211  1


Q ss_pred             ccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcCh------hHHHHHHHHHh-cCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST------SVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------~~~~~f~~~~~-~~~~v~  204 (222)
                      ..+++||+|+++..+...         .....+++.+.++|+|||.+++.......      .....|.+.+. ..|.+.
T Consensus        85 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (185)
T 3mti_A           85 YVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAM  164 (185)
T ss_dssp             TCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEE
T ss_pred             hccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEE
Confidence            236789999987432221         33456788999999999999887643221      12334444443 356664


Q ss_pred             Eec
Q 027530          205 LVP  207 (222)
Q Consensus       205 ~v~  207 (222)
                      .+.
T Consensus       165 ~~~  167 (185)
T 3mti_A          165 LYQ  167 (185)
T ss_dssp             EEE
T ss_pred             Eeh
Confidence            443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.69  E-value=3.5e-16  Score=126.29  Aligned_cols=107  Identities=17%  Similarity=0.099  Sum_probs=91.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++++..+++.            .++++...|+.+.   
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~v~~~~~d~~~~---   98 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS------------ERVHFIHNDAAGY---   98 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCCTTC---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC------------cceEEEECChHhC---
Confidence            457789999999999999999876 779999999 66999999999877642            4789988777643   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +. +++||+|++..++++......+++.+.++|+|||.+++....
T Consensus        99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A           99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            22 678999999999998888899999999999999999998754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.69  E-value=6.5e-16  Score=120.91  Aligned_cols=153  Identities=19%  Similarity=0.221  Sum_probs=111.6

Q ss_pred             EEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHH
Q 027530           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLP   99 (222)
Q Consensus        22 ~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~   99 (222)
                      ...+..+++ ..++...++....+.+++...         ..++.+|||+|||+|..++.+++.+. +|+++|+ +++++
T Consensus        28 ~~~~~~~~~-~~f~~~~~~~~~~~~~~l~~~---------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~   97 (205)
T 3grz_A           28 QEIIRLDPG-LAFGTGNHQTTQLAMLGIERA---------MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMT   97 (205)
T ss_dssp             CEEEEESCC------CCHHHHHHHHHHHHHH---------CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             ceeEEecCC-cccCCCCCccHHHHHHHHHHh---------ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            345555553 334444567778888888754         23578999999999999999998876 8999999 66999


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          100 LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .+++|+..++..             ++++...|+.+.     ..++||+|+++.++.   ....+++.+.++|+|||.++
T Consensus        98 ~a~~~~~~~~~~-------------~v~~~~~d~~~~-----~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~l~  156 (205)
T 3grz_A           98 AAEENAALNGIY-------------DIALQKTSLLAD-----VDGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQVI  156 (205)
T ss_dssp             HHHHHHHHTTCC-------------CCEEEESSTTTT-----CCSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEEEE
T ss_pred             HHHHHHHHcCCC-------------ceEEEecccccc-----CCCCceEEEECCcHH---HHHHHHHHHHHhcCCCCEEE
Confidence            999999988742             378888776543     247899999987653   35778899999999999999


Q ss_pred             EEEEEcChhHHHHHHHHHh-cCCeEEEec
Q 027530          180 LGYEIRSTSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       180 l~~~~r~~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      +.......  ...+.+.++ .+|.+..+.
T Consensus       157 ~~~~~~~~--~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          157 FSGIDYLQ--LPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             EEEEEGGG--HHHHHHHHHHTTEEEEEEE
T ss_pred             EEecCccc--HHHHHHHHHHcCCceEEee
Confidence            98665543  345555553 578775543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.68  E-value=1.1e-15  Score=123.86  Aligned_cols=105  Identities=13%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+++.+.+|+++|. +++++.+++++..++.             .++.+...|..+   .+..
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~~v~~~~~d~~~---l~~~  100 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-------------QQVEYVQGDAEQ---MPFT  100 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEECCC-C---CCSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEEecHHh---CCCC
Confidence            6789999999999999999999899999999 6699999999887663             367888866543   3344


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            679999999999999999999999999999999999997654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.68  E-value=1.8e-15  Score=126.02  Aligned_cols=108  Identities=7%  Similarity=-0.081  Sum_probs=92.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+..+++.            .++++...|..+.   
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~---  179 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID------------DHVRSRVCNMLDT---  179 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTSC---
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CceEEEECChhcC---
Confidence            456789999999999999999987 899999999 66999999999988743            4789998776543   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +..+++||+|+++.++++.+ ...+++.+.++|+|||.+++.....
T Consensus       180 ~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          180 PFDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             CCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEccc
Confidence            33467999999999998884 8999999999999999999887643

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=1.8e-16  Score=129.11  Aligned_cols=137  Identities=18%  Similarity=0.213  Sum_probs=101.6

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH---hhccccc
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW---NTSRISQ  114 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~---n~~~~~~  114 (222)
                      .+.+|+.|+.           ..++.+|||+|||+|.+++.+++..  .+|+++|+ +++++.+++|+..   |++.   
T Consensus        24 D~~lL~~~~~-----------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~---   89 (260)
T 2ozv_A           24 DAMLLASLVA-----------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS---   89 (260)
T ss_dssp             HHHHHHHTCC-----------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG---
T ss_pred             HHHHHHHHhc-----------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc---
Confidence            3778888763           2356799999999999999999885  57999999 6699999999987   6542   


Q ss_pred             cCCCCCCCCCceEEEEeecCCCccc----cccCCCccEEEEeccccCc------------------cCHHHHHHHHHHhc
Q 027530          115 MNPGSGNLLGSIQAVELDWGNEDHI----KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALS  172 (222)
Q Consensus       115 ~~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~fD~Ii~~d~~y~~------------------~~~~~ll~~~~~~l  172 (222)
                               .++++...|+.+....    .....+||+|+++++++..                  .....+++.+.++|
T Consensus        90 ---------~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L  160 (260)
T 2ozv_A           90 ---------ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM  160 (260)
T ss_dssp             ---------GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred             ---------ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence                     4689999887665210    1235789999999887654                  23678999999999


Q ss_pred             CCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          173 GPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       173 ~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      +|||.+++.....   ....+.+.++..|..
T Consensus       161 kpgG~l~~~~~~~---~~~~~~~~l~~~~~~  188 (260)
T 2ozv_A          161 VSGGQLSLISRPQ---SVAEIIAACGSRFGG  188 (260)
T ss_dssp             EEEEEEEEEECGG---GHHHHHHHHTTTEEE
T ss_pred             CCCCEEEEEEcHH---HHHHHHHHHHhcCCc
Confidence            9999999876543   235566666544543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.68  E-value=1.5e-15  Score=124.81  Aligned_cols=107  Identities=21%  Similarity=0.243  Sum_probs=91.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+++.|.+|+++|+ +++++.+++++..+++.            .++++...|+.+...  ..
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~--~~  133 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVS------------DNMQFIHCAAQDVAS--HL  133 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCG------------GGEEEEESCGGGTGG--GC
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC------------cceEEEEcCHHHhhh--hc
Confidence            4679999999999999999999999999999 66999999999876642            478888877654431  34


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus       134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence            689999999999999999999999999999999999998764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.68  E-value=6.7e-16  Score=121.24  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+|||+|||+|..+..+++. +.+|+++|. +++++.+++++..++.            ..++++...|+.+.   +..+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~------------~~~~~~~~~d~~~~---~~~~  109 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL------------NDRIQIVQGDVHNI---PIED  109 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC------------TTTEEEEECBTTBC---SSCT
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc------------cCceEEEEcCHHHC---CCCc
Confidence            39999999999999999987 668999999 6699999999988764            24788888776543   3346


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus       110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            79999999999999999999999999999999999997643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.68  E-value=2.7e-16  Score=123.42  Aligned_cols=158  Identities=14%  Similarity=-0.017  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ...+.+|+..-        ...++.+|||+|||+|..+..+++.|.+|+++|+ ++|++.++++...+...... .....
T Consensus         8 ~~~l~~~~~~l--------~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~-~~~~~   78 (203)
T 1pjz_A            8 NKDLQQYWSSL--------NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQ-GDFKV   78 (203)
T ss_dssp             THHHHHHHHHH--------CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEE-TTEEE
T ss_pred             CHHHHHHHHhc--------ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccc-ccccc
Confidence            45667776542        2236789999999999999999999999999999 56999998765421000000 00000


Q ss_pred             CCCCceEEEEeecCCCccccccC-CCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcCh---------h
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST---------S  188 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~-~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~---------~  188 (222)
                      ....++++.+.|..+.   +..+ ++||+|++..++++.+  ....+++.+.++|+|||++++.......         .
T Consensus        79 ~~~~~v~~~~~d~~~l---~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~  155 (203)
T 1pjz_A           79 YAAPGIEIWCGDFFAL---TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSV  155 (203)
T ss_dssp             EECSSSEEEEECCSSS---THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCC
T ss_pred             ccCCccEEEECccccC---CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCC
Confidence            0024678888776543   2222 6899999988886643  3456899999999999985544322110         1


Q ss_pred             HHHHHHHHHhcCCeEEEecCCCC
Q 027530          189 VHEQMLQMWKSNFNVKLVPKAKE  211 (222)
Q Consensus       189 ~~~~f~~~~~~~~~v~~v~~~~~  211 (222)
                      ..+++.+.+..+|++..+.....
T Consensus       156 ~~~el~~~~~~gf~i~~~~~~~~  178 (203)
T 1pjz_A          156 PQTWLHRVMSGNWEVTKVGGQDT  178 (203)
T ss_dssp             CHHHHHHTSCSSEEEEEEEESSC
T ss_pred             CHHHHHHHhcCCcEEEEeccccc
Confidence            23455555555888876655544

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=1.1e-15  Score=123.38  Aligned_cols=122  Identities=11%  Similarity=0.050  Sum_probs=97.6

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      .+..+...+....      +...++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++++..+++.       
T Consensus        29 ~~~~~~~~~l~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------   95 (257)
T 3f4k_A           29 GSPEATRKAVSFI------NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-------   95 (257)
T ss_dssp             CCHHHHHHHHTTS------CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-------
T ss_pred             CCHHHHHHHHHHH------hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-------
Confidence            3444555554432      2344678999999999999999998865 9999999 66999999999987743       


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                           .++++...|+.+.   +..+++||+|+++.++++. ....+++.+.++|+|||.+++....
T Consensus        96 -----~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A           96 -----DRVKGITGSMDNL---PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             -----TTEEEEECCTTSC---SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             -----CceEEEECChhhC---CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence                 4689998777443   3346799999999999888 6889999999999999999998754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=1.9e-15  Score=122.97  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=91.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..++.+++.+. +|+++|+ +++++.+++++..+++.            .++++...|+.+.   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~---  108 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ------------NRVTGIVGSMDDL---  108 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTSC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC------------cCcEEEEcChhhC---
Confidence            45678999999999999999998865 8999999 66999999999887643            4789999777543   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +...++||+|+++.++++. ....+++.+.++|+|||.+++....
T Consensus       109 ~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          109 PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            3346789999999999888 7889999999999999999998764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.67  E-value=1.1e-15  Score=123.79  Aligned_cols=124  Identities=17%  Similarity=0.185  Sum_probs=98.3

Q ss_pred             ccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhcccccc
Q 027530           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (222)
Q Consensus        38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (222)
                      .++....+++.+....       ...++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++..+       
T Consensus        36 ~~~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------  101 (266)
T 3ujc_A           36 ISSGGLEATKKILSDI-------ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------  101 (266)
T ss_dssp             CSTTHHHHHHHHTTTC-------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------
T ss_pred             cccchHHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------
Confidence            4455556666665542       3456789999999999999999987 889999999 56999888766532       


Q ss_pred             CCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          116 NPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       116 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                              .++++...|+.+.   +..+++||+|+++.++++.  .....+++.+.++|+|||.+++......
T Consensus       102 --------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          102 --------NKIIFEANDILTK---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             --------TTEEEEECCTTTC---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             --------CCeEEEECccccC---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence                    3788888776543   3346899999999999998  8888999999999999999999876433

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.67  E-value=4.1e-15  Score=123.23  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..++.+++. |.+|+++|+ +++++.+++++..+++            ..++++...|+.+.   
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS------------PRRKEVRIQGWEEF---  134 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC------------SSCEEEEECCGGGC---
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEECCHHHc---
Confidence            446789999999999999999987 889999999 6699999999988764            24788888776532   


Q ss_pred             cccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          140 KAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                         +++||+|+++.++++..         ....+++.+.++|+|||.+++......
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence               67899999999998773         347899999999999999999876543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=1.8e-15  Score=119.28  Aligned_cols=128  Identities=12%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.             .++++...|+.+.  
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~d~~~~--  100 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-------------KNVEVLKSEENKI--  100 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-------------TTEEEEECBTTBC--
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEecccccC--
Confidence            367899999999999999999886   68999999 6699999999988763             2688888776543  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----------hHHHHHHHHHh-cCCeEEEe
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------SVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----------~~~~~f~~~~~-~~~~v~~v  206 (222)
                       +..+++||+|+++.++++......+++.+.++|+|||.+++.......          .....+.+.++ .+|++..+
T Consensus       101 -~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          101 -PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             -SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             -CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence             334678999999999999989999999999999999999998654221          11355666664 58876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.66  E-value=1.9e-15  Score=123.09  Aligned_cols=122  Identities=12%  Similarity=0.073  Sum_probs=98.9

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +...+.+.+.+..       ...++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++..+++.       
T Consensus        45 ~~~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------  110 (273)
T 3bus_A           45 ATDRLTDEMIALL-------DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-------  110 (273)
T ss_dssp             HHHHHHHHHHHHS-------CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-------
T ss_pred             HHHHHHHHHHHhc-------CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-------
Confidence            3445556666552       3456789999999999999999875 779999999 56999999999877642       


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                           .++.+...|+.+   .+..+++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus       111 -----~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          111 -----NRVTFSYADAMD---LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             -----TTEEEEECCTTS---CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             -----cceEEEECcccc---CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence                 468888877654   3334678999999999999988999999999999999999988765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.66  E-value=2.4e-15  Score=121.30  Aligned_cols=102  Identities=14%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++++|||||||+|..+..+++.+. +|+++|+ +++++.++++..                ..++.+...|..+   .
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~~d~~~---~  102 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----------------SPVVCYEQKAIED---I  102 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----------------CTTEEEEECCGGG---C
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----------------cCCeEEEEcchhh---C
Confidence            45788999999999999999999988 8999999 669999888765                1367888866543   3


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +..+++||+|+++.++++......+++.+.++|+|||.++++.
T Consensus       103 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          103 AIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            3446899999999999999999999999999999999999974

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.66  E-value=2.6e-15  Score=116.40  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++..++.             .++++...|+.+.   +.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~d~~~~---~~   94 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-------------DNLHTRVVDLNNL---TF   94 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-------------TTEEEEECCGGGC---CC
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-------------CCcEEEEcchhhC---CC
Confidence            35679999999999999999999999999999 6699999999987763             2578888665432   22


Q ss_pred             cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .++||+|+++.++++..  ....+++.+.++|+|||.+++...
T Consensus        95 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 -DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             -CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence             67899999999998765  788899999999999999887654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.66  E-value=2.9e-15  Score=118.26  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++++|||||||+|..+..+++.+  .+|+++|+ +++++.+++++..+++..        ....++++...|+..   .
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--------~~~~~v~~~~~d~~~---~   96 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE--------MQRKRISLFQSSLVY---R   96 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCH--------HHHTTEEEEECCSSS---C
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccc--------ccCcceEEEeCcccc---c
Confidence            356899999999999999999887  58999999 669999999988765320        001268888876632   2


Q ss_pred             cccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +...++||+|+++.++++...  ...+++.+.++|+|||.++...
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            334578999999999988764  4789999999999999655443

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.66  E-value=1.7e-15  Score=120.90  Aligned_cols=130  Identities=15%  Similarity=0.060  Sum_probs=100.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..++.            ..++++...|+.+..    
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~~----  128 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK------------AEYFSFVKEDVFTWR----  128 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG------------GGGEEEECCCTTTCC----
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC------------CcceEEEECchhcCC----
Confidence            34569999999999999999998999999999 6699999998876432            247889987776533    


Q ss_pred             cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcCh--------hHHHHHHHHHh-cCCeEEEecC
Q 027530          142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST--------SVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~--------~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                      ...+||+|+++.++++..  ....+++.+.++|+|||.+++.......        .....+.+.++ .+|.+..+..
T Consensus       129 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          129 PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            245899999999998866  7889999999999999999886543211        12456666664 4887765543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.66  E-value=5e-16  Score=122.36  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ...+.+++...       ....++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..+            
T Consensus        36 ~~~~~~~l~~~-------~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------   96 (216)
T 3ofk_A           36 RERHTQLLRLS-------LSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW------------   96 (216)
T ss_dssp             HHHHHHHHHHH-------TTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC------------
T ss_pred             HHHHHHHHHHH-------cccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC------------
Confidence            33455555543       23446789999999999999999999989999999 66999999887643            


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCH---HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~---~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         .++++...|+.+..    ..++||+|+++.++++....   ..+++.+.++|+|||.++++...
T Consensus        97 ---~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A           97 ---SHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             ---SSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ---CCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence               37888887776543    36789999999999987765   46799999999999999997753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.66  E-value=7.6e-15  Score=114.75  Aligned_cols=121  Identities=12%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|..++.+++.+  .+|+++|. +++++.+++|++.++.             .++++...|+.+...
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~~~  104 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-------------RNVTLVEAFAPEGLD  104 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-------------TTEEEEECCTTTTCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-------------CcEEEEeCChhhhhh
Confidence            4467899999999999999999987  68999999 6699999999998873             378888866643321


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v  203 (222)
                         ..++||+|+++.+++   ....+++.+.++|+|||.+++......  ....+.+.++ .+|.+
T Consensus       105 ---~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~  162 (204)
T 3e05_A          105 ---DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYMV  162 (204)
T ss_dssp             ---TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCEE
T ss_pred             ---cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCce
Confidence               236799999987764   778999999999999999998765432  2345555553 46643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.66  E-value=3.4e-15  Score=117.78  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|||||||+|..+..+++.+  .+|+++|+ +++++.+++++..+++..        ....++++...|+..   ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--------~~~~~v~~~~~d~~~---~~   97 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR--------NQWERLQLIQGALTY---QD   97 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCH--------HHHTTEEEEECCTTS---CC
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCc--------ccCcceEEEeCCccc---cc
Confidence            56799999999999999999876  48999999 669999999987665320        001268888866532   22


Q ss_pred             ccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...++||+|+++.++++..  ....+++.+.++|+|||.+++..
T Consensus        98 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           98 KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            3357899999999998766  34789999999999999666554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.66  E-value=2.1e-15  Score=124.50  Aligned_cols=109  Identities=13%  Similarity=0.079  Sum_probs=92.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++...++.            .++++...|+.+   .
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~---~  144 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA------------DNITVKYGSFLE---I  144 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT------------TTEEEEECCTTS---C
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC------------cceEEEEcCccc---C
Confidence            346789999999999999999986 889999999 56999999998877642            478888877654   3


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +..+++||+|++..++++......+++.+.++|+|||.+++.....
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            3446789999999999998889999999999999999999987653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.65  E-value=1.7e-15  Score=123.45  Aligned_cols=108  Identities=16%  Similarity=0.232  Sum_probs=87.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+|.+|||||||+|..++.+++.    |++|+++|+ ++|++.|++++...+.            ..++++.+.|..+. 
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~------------~~~v~~~~~D~~~~-  135 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA------------PTPVDVIEGDIRDI-  135 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC------------SSCEEEEESCTTTC-
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc------------CceEEEeecccccc-
Confidence            36789999999999999999875    568999999 5699999999886553            35788988665543 


Q ss_pred             cccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                        +  .++||+|+++.++++.+  ....+++.+.++|+|||.++++...+..
T Consensus       136 --~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~  183 (261)
T 4gek_A          136 --A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE  183 (261)
T ss_dssp             --C--CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred             --c--ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence              2  35799999999987754  3456899999999999999998876544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.65  E-value=3.3e-16  Score=120.38  Aligned_cols=128  Identities=13%  Similarity=0.157  Sum_probs=95.7

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      +.+..+.+.+....      ....++++|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+..+++.      
T Consensus        26 p~~~~~~~~~~~~l------~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------   93 (187)
T 2fhp_A           26 PTTDKVKESIFNMI------GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP------   93 (187)
T ss_dssp             CCCHHHHHHHHHHH------CSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG------
T ss_pred             cCHHHHHHHHHHHH------HhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC------
Confidence            34556666665543      2235778999999999999998888774 8999999 66999999999988742      


Q ss_pred             CCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCccCHHHHHHHH--HHhcCCCeEEEEEEEEcC
Q 027530          118 GSGNLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  186 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~--~~~l~~~g~~~l~~~~r~  186 (222)
                            .++++...|+.+... .+...++||+|+++++ |+......+++.+  .++|+|||.+++......
T Consensus        94 ------~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A           94 ------EKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             ------GGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ------cceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence                  478888876654211 1112578999999877 5566777888888  778999999998876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.65  E-value=6.5e-15  Score=115.64  Aligned_cols=125  Identities=14%  Similarity=0.142  Sum_probs=94.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.+++.            .++++...|..+.   .
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~---~  117 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLS------------PRMRAVQGTAPAA---L  117 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCTTGG---G
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC------------CCEEEEeCchhhh---c
Confidence            346789999999999999999999889999999 66999999999988742            3788888665432   1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                      ...++||+|+++..+    ... +++.+.++|+|||++++.....  .....+.+.++ .++++..+..
T Consensus       118 ~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          118 ADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             TTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEE
T ss_pred             ccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEe
Confidence            123579999987644    455 9999999999999998877543  23345555553 3677665543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=8.8e-15  Score=120.18  Aligned_cols=106  Identities=15%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..++.++ ..|.+|+++|+ +++++.+++++...+.            ..++++...|+.+   .
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~------------~~~~~~~~~d~~~---~  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN------------LRSKRVLLAGWEQ---F  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC------------CSCEEEEESCGGG---C
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC------------CCCeEEEECChhh---C
Confidence            4567899999999999999888 66889999999 6699999998886553            2478888866642   2


Q ss_pred             cccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                         +++||+|++..++++.  .....+++.+.++|+|||.+++.....
T Consensus       127 ---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 ---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             ---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             ---CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence               2789999999999887  678899999999999999999987654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.65  E-value=2e-15  Score=119.94  Aligned_cols=109  Identities=14%  Similarity=0.190  Sum_probs=88.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++...        ....++.+...+..+   .+..
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~d~~~---~~~~   98 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ--------KTGGKAEFKVENASS---LSFH   98 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCS--------SSSCEEEEEECCTTS---CCSC
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCcc--------ccCcceEEEEecccc---cCCC
Confidence            6789999999999999999999999999999 669999999887665320        112367777766543   3334


Q ss_pred             CCCccEEEEeccccCccCHH---HHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~---~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .++||+|+++.++++.....   .+++.+.++|+|||.+++...
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            67899999999999887766   899999999999999999865

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=1.5e-15  Score=118.49  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=97.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      +.+|||+|||+|..+..+++.|.+|+++|+ +++++.++++.                  .++.+...|+.+   .+..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~~~~~d~~~---~~~~~  100 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------------------PSVTFHHGTITD---LSDSP  100 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------------------TTSEEECCCGGG---GGGSC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------------------CCCeEEeCcccc---cccCC
Confidence            679999999999999999999999999999 66999888762                  256777755543   33446


Q ss_pred             CCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcCh-------------hHHHHHHHHHh-cCCeEEEec
Q 027530          144 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------------~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      ++||+|+++.++++..  ....+++.+.++|+|||.+++.......             .....+.+.++ .+|++..+.
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  180 (203)
T 3h2b_A          101 KRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH  180 (203)
T ss_dssp             CCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence            8999999999998875  8899999999999999999998754321             12456666664 588886665


Q ss_pred             CC
Q 027530          208 KA  209 (222)
Q Consensus       208 ~~  209 (222)
                      ..
T Consensus       181 ~~  182 (203)
T 3h2b_A          181 WD  182 (203)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=4.1e-15  Score=113.54  Aligned_cols=135  Identities=13%  Similarity=0.063  Sum_probs=101.3

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +....+.+++....       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.        
T Consensus        18 ~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   82 (183)
T 2yxd_A           18 ITKEEIRAVSIGKL-------NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI--------   82 (183)
T ss_dssp             CCCHHHHHHHHHHH-------CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC--------
T ss_pred             cCHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC--------
Confidence            34455666665542       3346789999999999999999997779999999 6699999999998763        


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                           .++++...|+.+    ....++||+|+++.+    .....+++.+.++  |||.+++......  ....+.+.++
T Consensus        83 -----~~~~~~~~d~~~----~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~--~~~~~~~~l~  145 (183)
T 2yxd_A           83 -----KNCQIIKGRAED----VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE--NAAKIINEFE  145 (183)
T ss_dssp             -----CSEEEEESCHHH----HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH--HHHHHHHHHH
T ss_pred             -----CcEEEEECCccc----cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc--cHHHHHHHHH
Confidence                 368888866654    122368999999988    6778899999988  9999988774432  2355555554


Q ss_pred             -cCCeEEEe
Q 027530          199 -SNFNVKLV  206 (222)
Q Consensus       199 -~~~~v~~v  206 (222)
                       .++.++.+
T Consensus       146 ~~g~~~~~~  154 (183)
T 2yxd_A          146 SRGYNVDAV  154 (183)
T ss_dssp             HTTCEEEEE
T ss_pred             HcCCeEEEE
Confidence             46777655

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.63  E-value=1.9e-15  Score=120.90  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||||||+|..+..+++.+.+|+++|. +++++.++++...                 ++++...|..+.    .
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----------------~v~~~~~d~~~~----~   99 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----------------GITYIHSRFEDA----Q   99 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----------------CEEEEESCGGGC----C
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----------------CeEEEEccHHHc----C
Confidence            46779999999999999999999999999999 5699988876431                 567777555433    2


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHH-HhcCCCeEEEEEEEEc
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEIR  185 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~l~~~~r  185 (222)
                      .+++||+|+++.++++..+...+++.+. ++|+|||.+++..+.+
T Consensus       100 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          100 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            4678999999999999989999999999 9999999999988654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=5.4e-15  Score=119.88  Aligned_cols=154  Identities=13%  Similarity=0.053  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC-
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG-  120 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-  120 (222)
                      ..+.+++....       ...++.+|||+|||+|..+..+++.|.+|+++|+ +.|++.++++....... .......+ 
T Consensus        54 ~~l~~~~~~~~-------~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~-~~~~~~~~~  125 (252)
T 2gb4_A           54 QLLKKHLDTFL-------KGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTE-EPLAEIAGA  125 (252)
T ss_dssp             HHHHHHHHHHH-------TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEE-EECTTSTTC
T ss_pred             HHHHHHHHHhc-------cCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccccccc-ccccccccc
Confidence            45666664321       1236689999999999999999999999999999 56999887654210000 00000000 


Q ss_pred             ----CCCCceEEEEeecCCCcccccc-CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcC-------
Q 027530          121 ----NLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS-------  186 (222)
Q Consensus       121 ----~~~~~v~~~~~d~~~~~~~~~~-~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~-------  186 (222)
                          ....++++.+.|..+   .+.. .++||+|++..++++.  .....+++.+.++|+|||++++......       
T Consensus       126 ~~~~~~~~~i~~~~~D~~~---l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~  202 (252)
T 2gb4_A          126 KVFKSSSGSISLYCCSIFD---LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGP  202 (252)
T ss_dssp             EEEEETTSSEEEEESCTTT---GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCS
T ss_pred             cccccCCCceEEEECcccc---CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCC
Confidence                012478888866544   3332 3789999998877654  3456799999999999999975432210       


Q ss_pred             --hhHHHHHHHHHhcCCeEEEec
Q 027530          187 --TSVHEQMLQMWKSNFNVKLVP  207 (222)
Q Consensus       187 --~~~~~~f~~~~~~~~~v~~v~  207 (222)
                        ....+++.+.+...|++..+.
T Consensus       203 ~~~~~~~el~~~l~~~f~v~~~~  225 (252)
T 2gb4_A          203 PFYVPSAELKRLFGTKCSMQCLE  225 (252)
T ss_dssp             SCCCCHHHHHHHHTTTEEEEEEE
T ss_pred             CCCCCHHHHHHHhhCCeEEEEEe
Confidence              012356666666568776554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.63  E-value=4e-15  Score=121.45  Aligned_cols=119  Identities=20%  Similarity=0.178  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      ...+.+++...       ....++.+|||||||+|..+..+++.  +.+|+++|. +.+++.+++++..++.        
T Consensus        22 ~~~l~~~l~~~-------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------   86 (276)
T 3mgg_A           22 AETLEKLLHHD-------TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--------   86 (276)
T ss_dssp             -CHHHHHHHTT-------CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHhhc-------ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence            44566666554       33457889999999999999999988  568999999 6699999999987763        


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                           .++++...|..+   .+..+++||+|+++.++++......+++.+.++|+|||.+++...
T Consensus        87 -----~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A           87 -----KNVKFLQANIFS---LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             -----CSEEEEECCGGG---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----CCcEEEEccccc---CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                 367888866543   334467999999999999999999999999999999999998764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.63  E-value=1.7e-14  Score=121.39  Aligned_cols=123  Identities=17%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-cc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-KA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  141 (222)
                      ++++|||+|||+|..++.+++.|++|+++|+ +.+++.+++|++.|++.           ..++++...|+.+.... ..
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~-----------~~~v~~i~~D~~~~l~~~~~  221 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE-----------QAPIRWICEDAMKFIQREER  221 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT-----------TSCEEEECSCHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC-----------ccceEEEECcHHHHHHHHHh
Confidence            5679999999999999999999999999999 56999999999999753           12478887655432110 01


Q ss_pred             cCCCccEEEEeccccCcc----------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          142 VAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~----------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      ...+||+|+++++.|...          ....+++.+.++|+|||.+++............|.+.+
T Consensus       222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l  287 (332)
T 2igt_A          222 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELM  287 (332)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHH
T ss_pred             cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHH
Confidence            146899999988765422          35678899999999999988777654432223444333

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.63  E-value=4.6e-15  Score=118.59  Aligned_cols=102  Identities=14%  Similarity=0.097  Sum_probs=87.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+++.|++|+++|+ +++++.++++..                ..++++...|..+.   +..
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~~d~~~~---~~~  113 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE----------------GPDLSFIKGDLSSL---PFE  113 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC----------------BTTEEEEECBTTBC---SSC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc----------------cCCceEEEcchhcC---CCC
Confidence            6789999999999999999999999999999 569988887641                24678888766543   334


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus       114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            689999999999999999999999999999999999998753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=1.4e-15  Score=122.09  Aligned_cols=126  Identities=12%  Similarity=0.078  Sum_probs=92.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.++..  +.+|+++|. +++++.+++|++.+++             .++++...|+.+.....
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~~~~~  136 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-------------ENTTFCHDRAETFGQRK  136 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-------------SSEEEEESCHHHHTTCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CCEEEEeccHHHhcccc
Confidence            5789999999999999999953  668999999 6699999999998874             25888886654321101


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v  206 (222)
                      ...++||+|++..+    .....+++.+.++|+|||.+++............+.+.++ .+|.+..+
T Consensus       137 ~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          137 DVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             TTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             cccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence            12468999998763    4678899999999999999988654444433445555553 47766544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.63  E-value=5e-15  Score=117.17  Aligned_cols=104  Identities=16%  Similarity=0.247  Sum_probs=87.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++              .++++...|..+.   +..
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------------~~~~~~~~d~~~~---~~~  100 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--------------SNVEFIVGDARKL---SFE  100 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCCEEEECCTTSC---CSC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------------CCceEEECchhcC---CCC
Confidence            3689999999999999999999999999999 669999999988664              3678888776543   233


Q ss_pred             CCCccEEEEecc--ccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~--~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .++||+|+++++  +++......+++.+.++|+|||.+++....
T Consensus       101 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            578999999999  665666788999999999999999988764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=3.7e-15  Score=114.81  Aligned_cols=125  Identities=19%  Similarity=0.277  Sum_probs=96.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++..                  ++.+...|+.+.   +..
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~------------------~~~~~~~d~~~~---~~~  104 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------------------EARWVVGDLSVD---QIS  104 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------------------TSEEEECCTTTS---CCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC------------------CCcEEEcccccC---CCC
Confidence            5689999999999999999999999999999 669998887653                  356777665543   223


Q ss_pred             CCCccEEEEe-ccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecCC
Q 027530          143 APPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  209 (222)
Q Consensus       143 ~~~fD~Ii~~-d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~~  209 (222)
                      .++||+|+++ +++++.  +....+++.+.++|+|||.+++............+.+.++ .+|.+..+...
T Consensus       105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence            5789999998 666554  4457899999999999999999887654334566666664 58988776544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.63  E-value=1.4e-15  Score=123.20  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=92.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||||||+|.+++.++..  +.+|+++|. +++++.+++|++.+++.             ++++.+.++.+....
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-------------~v~~~~~d~~~~~~~  145 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-------------GARALWGRAEVLARE  145 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-------------SEEEEECCHHHHTTS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------ceEEEECcHHHhhcc
Confidence            35789999999999999999987  568999998 66999999999988742             588888665432211


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v  206 (222)
                      ....++||+|++..+    .....+++.+.++|+|||++++........-...+...++ .++.+..+
T Consensus       146 ~~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          146 AGHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             TTTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred             cccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            112478999998754    3578899999999999999877554333332334444443 36665443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=4.5e-15  Score=120.76  Aligned_cols=105  Identities=15%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      ...++.+|||||||+|..++.+++.|++|+++|. ++|++.+++|+..+                   +...+|.+... 
T Consensus        42 ~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~-------------------~v~~~~~~~~~~  102 (261)
T 3iv6_A           42 NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR-------------------CVTIDLLDITAE  102 (261)
T ss_dssp             TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS-------------------CCEEEECCTTSC
T ss_pred             CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-------------------cceeeeeecccc
Confidence            3456789999999999999999999999999999 56999999887633                   12334443322 


Q ss_pred             -ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 -IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 -~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       .....++||+|+++.++++.  .....+++.+.++| |||+++++...-
T Consensus       103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence             11235789999999988653  44667899999999 999999998753

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.62  E-value=8.5e-15  Score=111.55  Aligned_cols=125  Identities=10%  Similarity=0.009  Sum_probs=90.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++..            .++ +...+..+  .
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~-~~~~d~~~--~   87 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS------------DRI-AVQQGAPR--A   87 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT------------TSE-EEECCTTG--G
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC------------CCE-EEecchHh--h
Confidence            346789999999999999999987  568999999 66999999999877642            356 66544432  2


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEec
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      .+...++||+|+++.++++    ..+++.+.++|+|||.+++.......  ...+.+.++ .++++..+.
T Consensus        88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  151 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSFA  151 (178)
T ss_dssp             GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEEE
T ss_pred             hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEEE
Confidence            2222378999999988865    67999999999999999887654322  234444443 345554443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.62  E-value=1.3e-15  Score=119.23  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..++.++..++ +|+++|+ +++++.+++|++.+++.           ..++++...|..+... ..
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------~~~v~~~~~d~~~~~~-~~  120 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-----------SEQAEVINQSSLDFLK-QP  120 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----------TTTEEEECSCHHHHTT-SC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC-----------ccceEEEECCHHHHHH-hh
Confidence            568999999999999998777775 7999999 66999999999988741           1367888765532211 11


Q ss_pred             cCCC-ccEEEEeccccCccCHHHHHHHH--HHhcCCCeEEEEEEEEcC
Q 027530          142 VAPP-FDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  186 (222)
Q Consensus       142 ~~~~-fD~Ii~~d~~y~~~~~~~ll~~~--~~~l~~~g~~~l~~~~r~  186 (222)
                      .+++ ||+|+++++ |+......+++.+  .++|+|||.+++....+.
T Consensus       121 ~~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          121 QNQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CSSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             ccCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            2467 999999888 5566777888888  567999999999887654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=8.5e-16  Score=117.44  Aligned_cols=110  Identities=13%  Similarity=0.228  Sum_probs=85.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++++|||+|||+|..++.+++.+. +|+++|+ +++++.+++|++.+++.            .++++...|+.+.  .
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~--~   94 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE------------NRFTLLKMEAERA--I   94 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG------------GGEEEECSCHHHH--H
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CceEEEECcHHHh--H
Confidence            45678999999999999999998864 8999999 66999999999987642            4688887665432  2


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHH--HhcCCCeEEEEEEEEcC
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~--~~l~~~g~~~l~~~~r~  186 (222)
                      +...++||+|++++++ .......+++.+.  ++|+|||.+++....+.
T Consensus        95 ~~~~~~fD~i~~~~~~-~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           95 DCLTGRFDLVFLDPPY-AKETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHBCSCEEEEEECCSS-HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhhcCCCCEEEECCCC-CcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            2234679999988764 3455667777777  88999999999876544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.62  E-value=8.2e-15  Score=120.40  Aligned_cols=122  Identities=17%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|++|||+|||+|..++.+++.|+ +|+++|. +++++.+++|++.|++.            .++++...|..+...   
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~------------~~v~~~~~D~~~~~~---  189 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFPG---  189 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCCC---
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEECCHHHhcc---
Confidence            478999999999999999999988 5999999 67999999999999853            458888877654432   


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC----hhHHHHHHHHHh-cCCeEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~----~~~~~~f~~~~~-~~~~v~~  205 (222)
                       ..+||+|+++++.    ....+++.+.++|+|||.+++......    ....+.+.+.++ .++.++.
T Consensus       190 -~~~fD~Vi~~~p~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          190 -ENIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -CSCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred             -cCCccEEEECCch----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence             6789999987653    336788899999999999988776532    223445555553 4777766

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.62  E-value=1.2e-14  Score=113.30  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++ +|||+|||+|..+..+++.|.+|+++|. +++++.++++...++              .++.+...|..+.   +..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------------~~~~~~~~d~~~~---~~~   91 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKG--------------VKITTVQSNLADF---DIV   91 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHT--------------CCEEEECCBTTTB---SCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC--------------CceEEEEcChhhc---CCC
Confidence            45 9999999999999999999999999999 569999999988765              2567777665543   234


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--------------hHHHHHHHHHhcCCeEEEecC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST--------------SVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~--------------~~~~~f~~~~~~~~~v~~v~~  208 (222)
                      +++||+|+++.+.+.......+++.+.++|+|||.+++.......              ....++.+.++ +|++..+..
T Consensus        92 ~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~  170 (202)
T 2kw5_A           92 ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANN  170 (202)
T ss_dssp             TTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEE
T ss_pred             cCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEE
Confidence            578999999755443456788999999999999999998754321              12345556666 888765544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.62  E-value=2.5e-14  Score=112.74  Aligned_cols=130  Identities=18%  Similarity=0.059  Sum_probs=95.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||||||+|..++.+++.  +.+|+++|+ +++++.+++|+..+++             .++.+...|+.+... .
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~~v~~~~~d~~~~~~-~  106 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-------------PNIKLLWVDGSDLTD-Y  106 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------------SSEEEEECCSSCGGG-T
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-------------CCEEEEeCCHHHHHh-h
Confidence            4679999999999999999987  468999999 6699999999998763             378899877765321 1


Q ss_pred             ccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530          141 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  209 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~  209 (222)
                      ...++||+|+++.+..+..        ....+++.+.++|+|||.+++.....  .......+.+ +.+|.+..+..+
T Consensus       107 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~d  182 (214)
T 1yzh_A          107 FEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--GLFEYSLVSFSQYGMKLNGVWLD  182 (214)
T ss_dssp             SCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEESS
T ss_pred             cCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHHHCCCeeeecccc
Confidence            2356899999986542211        23679999999999999999876432  2233444444 347887766543

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.62  E-value=6.3e-15  Score=115.67  Aligned_cols=123  Identities=17%  Similarity=0.238  Sum_probs=93.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.                   +.+...+..+   .+ 
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-------------------~~~~~~d~~~---~~-   98 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG-------------------RPVRTMLFHQ---LD-   98 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-------------------SCCEECCGGG---CC-
T ss_pred             CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcC-------------------CceEEeeecc---CC-
Confidence            35789999999999999999999999999999 669999988761                   1233433332   22 


Q ss_pred             cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHh-cC-CeEEE
Q 027530          142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SN-FNVKL  205 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~-~~-~~v~~  205 (222)
                      ..++||+|+++.++++..  ....+++.+.++|+|||.+++.......            .....+.+.++ .+ |++..
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~  178 (211)
T 3e23_A           99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA  178 (211)
T ss_dssp             CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred             CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence            467999999999998876  7778999999999999999998764331            12456666664 48 88765


Q ss_pred             ecC
Q 027530          206 VPK  208 (222)
Q Consensus       206 v~~  208 (222)
                      +..
T Consensus       179 ~~~  181 (211)
T 3e23_A          179 VES  181 (211)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.61  E-value=2e-15  Score=118.37  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..++.++..++ +|+++|+ +++++.+++|++.++.             .++++...|+.+.  .+.
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-------------~~v~~~~~D~~~~--~~~  118 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-------------GNARVVNSNAMSF--LAQ  118 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-------------CSEEEECSCHHHH--HSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEECCHHHH--Hhh
Confidence            568999999999999998887775 8999999 6699999999998863             3678887665432  122


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEEcC
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIRS  186 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~r~  186 (222)
                      ..++||+|+++++ |+......+++.+.+  +|+|||.+++......
T Consensus       119 ~~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          119 KGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             CCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             cCCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            3568999999877 666777888888876  4999999998876543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.61  E-value=1.9e-15  Score=114.67  Aligned_cols=120  Identities=11%  Similarity=0.097  Sum_probs=95.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++    .              .++++...|      .+..
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~--------------~~v~~~~~d------~~~~   72 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK----F--------------DSVITLSDP------KEIP   72 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH----C--------------TTSEEESSG------GGSC
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh----C--------------CCcEEEeCC------CCCC
Confidence            5679999999999999999998879999999 6699998887    1              256777655      2334


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----------hHHHHHHHHHhcCCeEEEecC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------SVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----------~~~~~f~~~~~~~~~v~~v~~  208 (222)
                      +++||+|+++.++++......+++.+.++|+|||.+++....+..          -...++.+.++ +|++..+..
T Consensus        73 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~  147 (170)
T 3i9f_A           73 DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFN  147 (170)
T ss_dssp             TTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEEC
T ss_pred             CCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccC
Confidence            678999999999999989999999999999999999998764331          11345666667 888765543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=7.1e-16  Score=116.76  Aligned_cols=108  Identities=20%  Similarity=0.160  Sum_probs=84.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-cccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-HIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  141 (222)
                      ++++|||+|||+|..++.+++.+++|+++|. +++++.+++|+..++.              ++++...|+.+.. ....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~~~~~~  106 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--------------GARVVALPVEVFLPEAKA  106 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--------------CCEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--------------ceEEEeccHHHHHHhhhc
Confidence            6789999999999999999999999999999 6699999999988762              5677776654321 1111


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHH--HhcCCCeEEEEEEEEcCh
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRST  187 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~--~~l~~~g~~~l~~~~r~~  187 (222)
                      ..++||+|+++++++  .....+++.+.  ++|+|||.+++....+..
T Consensus       107 ~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          107 QGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             TTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             cCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            134899999988754  56667788887  899999999998876543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.61  E-value=8.3e-15  Score=125.58  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=93.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||||||+|..++.+++.   +.+|+++|+ +++++.+++|++.+.......     ....++++...|+.+..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~-----~~~~~v~~~~~d~~~l~  155 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS-----PSRSNVRFLKGFIENLA  155 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS-----TTCCCEEEEESCTTCGG
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc-----cCCCceEEEEccHHHhh
Confidence            457889999999999999998875   458999999 669999999988763110000     01247899997776543


Q ss_pred             cc---cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          138 HI---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       138 ~~---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..   +..+++||+|+++.++++......+++.+.++|+|||.+++.....
T Consensus       156 ~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          156 TAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             GCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            22   4456799999999999998899999999999999999999986543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1.5e-14  Score=120.62  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=89.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..++.+++. |++|+++|+ +++++.+++++..+++            ..++++...|+.+.   
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~---  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT------------NRSRQVLLQGWEDF---  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC------------SSCEEEEESCGGGC---
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEECChHHC---
Confidence            456789999999999999999987 899999999 6699999999887653            24688887665432   


Q ss_pred             cccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          140 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                         +++||+|++..++++.  .....+++.+.++|+|||.+++......
T Consensus       153 ---~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          153 ---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             ---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             ---CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence               2689999999999886  6788999999999999999999887654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.60  E-value=7.8e-15  Score=125.51  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=88.8

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ....++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|++.            .++++...|+.+.. 
T Consensus        59 ~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~-  125 (376)
T 3r0q_C           59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLD------------HIVEVIEGSVEDIS-  125 (376)
T ss_dssp             TTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCT------------TTEEEEESCGGGCC-
T ss_pred             cccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCC------------CeEEEEECchhhcC-
Confidence            3567889999999999999999999988 899999889999999999988753            56899987765432 


Q ss_pred             ccccCCCccEEEEeccccCc---cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                        . .++||+|++..+.|..   .....+++.+.++|+|||.+++..
T Consensus       126 --~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          126 --L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             --C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             --c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence              2 3789999997655553   568889999999999999987644

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=5.8e-15  Score=121.29  Aligned_cols=102  Identities=19%  Similarity=0.274  Sum_probs=86.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..++.              ++++...|..+..   . 
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~~---~-  181 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--------------NISTALYDINAAN---I-  181 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------------CEEEEECCGGGCC---C-
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--------------ceEEEEecccccc---c-
Confidence            6789999999999999999999999999999 6699999999987762              6788886654332   2 


Q ss_pred             CCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .++||+|+++.++++.  .....+++.+.++|+|||.+++...
T Consensus       182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            6789999999999865  5577899999999999999887664

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.60  E-value=2.7e-15  Score=123.56  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=87.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..++.++..|++|+++|+ +++++.+++++......         ....++.+...++.+.......
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~  127 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE---------PAFDKWVIEEANWLTLDKDVPA  127 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTS---------HHHHTCEEEECCGGGHHHHSCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccc---------cccceeeEeecChhhCcccccc
Confidence            5689999999999999999999999999999 56999999987544321         0123567777555432100034


Q ss_pred             CCCccEEEEe-ccccCccC-------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGT-DVVYAEHL-------LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~-d~~y~~~~-------~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++ .++++...       ...+++.+.++|+|||.+++..+.
T Consensus       128 ~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          128 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6799999998 88888777       889999999999999999987754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.60  E-value=7.7e-15  Score=123.94  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+..            .++++...|..+.   
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~------------~~i~~~~~d~~~~---  125 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE------------DTITLIKGKIEEV---  125 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT------------TTEEEEESCTTTS---
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCC------------CcEEEEEeeHHHh---
Confidence            346788999999999999999999987 899999966999999999988742            5788888766543   


Q ss_pred             cccCCCccEEEEecc---ccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          140 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~---~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      +...++||+|+++.+   +.+......++..+.++|+|||.++
T Consensus       126 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          126 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            333578999999874   3445567789999999999999987

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.60  E-value=1.2e-14  Score=119.09  Aligned_cols=136  Identities=16%  Similarity=0.245  Sum_probs=99.4

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      +.+..+.+++....       . .++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.      
T Consensus        93 ~~te~l~~~~l~~~-------~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------  158 (276)
T 2b3t_A           93 PDTECLVEQALARL-------P-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------  158 (276)
T ss_dssp             TTHHHHHHHHHHHS-------C-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------
T ss_pred             chHHHHHHHHHHhc-------c-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            44667777776652       1 35679999999999999999976  568999999 6699999999998874      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc-------------------------cCHHHHHHHHHHh
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFAL  171 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-------------------------~~~~~ll~~~~~~  171 (222)
                             .++++...|+.+..    ..++||+|++++++...                         .....+++.+.++
T Consensus       159 -------~~v~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~  227 (276)
T 2b3t_A          159 -------KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA  227 (276)
T ss_dssp             -------CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred             -------CceEEEEcchhhhc----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh
Confidence                   26888887775431    25689999999776432                         2346688889999


Q ss_pred             cCCCeEEEEEEEEcChhHHHHHHHHHhcCCe
Q 027530          172 SGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       172 l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~  202 (222)
                      |+|||.+++............+++  +.+|.
T Consensus       228 LkpgG~l~~~~~~~~~~~~~~~l~--~~Gf~  256 (276)
T 2b3t_A          228 LVSGGFLLLEHGWQQGEAVRQAFI--LAGYH  256 (276)
T ss_dssp             EEEEEEEEEECCSSCHHHHHHHHH--HTTCT
T ss_pred             cCCCCEEEEEECchHHHHHHHHHH--HCCCc
Confidence            999999998765444433333333  34664

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.60  E-value=2.2e-14  Score=113.03  Aligned_cols=100  Identities=19%  Similarity=0.140  Sum_probs=83.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.                 .++++...|..+.   +..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----------------~~~~~~~~d~~~~---~~~  104 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----------------KEFSITEGDFLSF---EVP  104 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----------------TTCCEESCCSSSC---CCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----------------CceEEEeCChhhc---CCC
Confidence            5689999999999999999999999999999 569998887654                 1456777555443   223


Q ss_pred             CCCccEEEEeccccCccCHHH--HHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~--ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       ++||+|+++.++++......  +++.+.++|+|||.+++....
T Consensus       105 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  147 (220)
T 3hnr_A          105 -TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI  147 (220)
T ss_dssp             -SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             -CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence             79999999999988777666  999999999999999998754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.60  E-value=2.2e-16  Score=123.74  Aligned_cols=142  Identities=16%  Similarity=0.181  Sum_probs=78.7

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +..+.+++....      ....++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.        
T Consensus        14 ~~~~~~~~~~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   79 (215)
T 4dzr_A           14 TEVLVEEAIRFL------KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--------   79 (215)
T ss_dssp             HHHHHHHHHHHH------TTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------
T ss_pred             HHHHHHHHHHHh------hhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------
Confidence            456666666543      12256789999999999999999998  448999999 6699999999987652        


Q ss_pred             CCCCCCceEEEEeecCCCccc-cccCCCccEEEEeccccCccCH--------------------------HHHHHHHHHh
Q 027530          119 SGNLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLL--------------------------EPLLQTIFAL  171 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~Ii~~d~~y~~~~~--------------------------~~ll~~~~~~  171 (222)
                            ++++...|+.+.... ....++||+|+++++++.....                          ..+++.+.++
T Consensus        80 ------~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  153 (215)
T 4dzr_A           80 ------VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV  153 (215)
T ss_dssp             ---------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGG
T ss_pred             ------ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH
Confidence                  455566555431100 0113789999999887653322                          6677888899


Q ss_pred             cCCCeE-EEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          172 SGPKTT-ILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       172 l~~~g~-~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      |+|||. +++............+++.++.+|..
T Consensus       154 LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          154 LARGRAGVFLEVGHNQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             BCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEE
T ss_pred             hcCCCeEEEEEECCccHHHHHHHHHHhhcCCce
Confidence            999999 55554433333233333322345643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.60  E-value=1.1e-14  Score=133.62  Aligned_cols=141  Identities=18%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|++|||+|||+|..++.++..|+ +|+++|+ +.+++.+++|++.|++.           ..++++.+.|..+.  +..
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~-----------~~~v~~i~~D~~~~--l~~  605 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT-----------GRAHRLIQADCLAW--LRE  605 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-----------STTEEEEESCHHHH--HHH
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----------ccceEEEecCHHHH--HHh
Confidence            678999999999999999999888 4999999 56999999999999852           24788888665432  222


Q ss_pred             cCCCccEEEEeccccCc-----------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEecCCC
Q 027530          142 VAPPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK  210 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~-----------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~  210 (222)
                      ..++||+|+++++.+..           .....+++.+.++|+|||.++++...+........++  +.++.++.+....
T Consensus       606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~  683 (703)
T 3v97_A          606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKT  683 (703)
T ss_dssp             CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTT
T ss_pred             cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeecc
Confidence            35789999998876531           2356688899999999999998887755433233332  3578888999999


Q ss_pred             CCcccCCCC
Q 027530          211 ESTMWGNPL  219 (222)
Q Consensus       211 ~~~~~~~~~  219 (222)
                      ++++|....
T Consensus       684 lp~df~~~~  692 (703)
T 3v97_A          684 LSQDFARNR  692 (703)
T ss_dssp             CCGGGTTCS
T ss_pred             CCCCCCCCC
Confidence            999987544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.60  E-value=2.1e-14  Score=115.97  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=89.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++ ...             ..++.+...|+.+.   +
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-------------~~~~~~~~~d~~~~---~   99 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-------------DRKVQVVQADARAI---P   99 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-------------CTTEEEEESCTTSC---C
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-------------CCceEEEEcccccC---C
Confidence            346789999999999999999999999999999 56999999887 222             24788888776543   3


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..+++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus       100 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (263)
T 2yqz_A          100 LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA  144 (263)
T ss_dssp             SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence            346789999999999998889999999999999999999885443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.60  E-value=5.4e-15  Score=125.28  Aligned_cols=104  Identities=20%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||||||+|..++.+++.|+ +|+++|.+++++.++++++.|+..            .++++...++.+.   +
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~------------~~v~~~~~d~~~~---~  128 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLD------------HVVTIIKGKVEEV---E  128 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCT------------TTEEEEESCTTTC---C
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCC------------CcEEEEECcHHHc---c
Confidence            45788999999999999999999987 899999977999999999988753            4689999777654   2


Q ss_pred             ccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEEE
Q 027530          141 AVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ...++||+|+++.+.|   +......+++.+.++|+|||.++.
T Consensus       129 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          129 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            3357999999976543   457888999999999999999864

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.59  E-value=3.5e-15  Score=121.33  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=86.3

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      ..+.++|....         ..+.+|||||||+|..+..++..+.+|+++|. +.|++.+++                  
T Consensus        27 ~~l~~~l~~~~---------~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------------------   79 (257)
T 4hg2_A           27 RALFRWLGEVA---------PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------------------   79 (257)
T ss_dssp             HHHHHHHHHHS---------SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------------------
T ss_pred             HHHHHHHHHhc---------CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------------------
Confidence            34667777652         13468999999999999999999999999999 458766542                  


Q ss_pred             CCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       ..++.+...+.   +..+..+++||+|+++.++++. ..+.+++.+.++|||||.+.+....
T Consensus        80 -~~~v~~~~~~~---e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A           80 -HPRVTYAVAPA---EDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             -CTTEEEEECCT---TCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -cCCceeehhhh---hhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence             13678887554   3445567899999999999765 4788999999999999999776654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.59  E-value=6e-15  Score=115.35  Aligned_cols=105  Identities=10%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             CCCeEEEeCCCccHHH-HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~-i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..+ ..++..+.+|+++|. +++++.+++++..++              .++++...|..+.   +.
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------------~~~~~~~~d~~~~---~~   85 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--------------FKLNISKGDIRKL---PF   85 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--------------CCCCEEECCTTSC---CS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------CceEEEECchhhC---CC
Confidence            5689999999999874 455677889999999 669999999987664              2567777665542   33


Q ss_pred             cCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          142 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .+++||+|+++.++++.  .....+++.+.++|+|||.+++.....
T Consensus        86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            46789999999998886  667889999999999999999987653

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.59  E-value=9.3e-15  Score=115.27  Aligned_cols=128  Identities=14%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc-c
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK-A  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  141 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.++++    .               ++.+...++.+....+ .
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~---------------~~~~~~~~~~~~~~~~~~  112 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA----G---------------AGEVHLASYAQLAEAKVP  112 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT----C---------------SSCEEECCHHHHHTTCSC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh----c---------------ccccchhhHHhhcccccc
Confidence            5589999999999999999999999999999 5699988876    1               2344444433321112 2


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC-----------------------------hhHHHH
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-----------------------------TSVHEQ  192 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~-----------------------------~~~~~~  192 (222)
                      ...+||+|+++.+++ ......+++.+.++|+|||.+++......                             ......
T Consensus       113 ~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (227)
T 3e8s_A          113 VGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLAS  191 (227)
T ss_dssp             CCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHH
T ss_pred             cCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHH
Confidence            245699999999998 77888999999999999999999764211                             013466


Q ss_pred             HHHHHh-cCCeEEEecCCCC
Q 027530          193 MLQMWK-SNFNVKLVPKAKE  211 (222)
Q Consensus       193 f~~~~~-~~~~v~~v~~~~~  211 (222)
                      +.+.++ .||++..+.....
T Consensus       192 ~~~~l~~aGf~~~~~~~~~~  211 (227)
T 3e8s_A          192 WLNALDMAGLRLVSLQEPQH  211 (227)
T ss_dssp             HHHHHHHTTEEEEEEECCCC
T ss_pred             HHHHHHHcCCeEEEEecCCC
Confidence            777764 5999987766433

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.59  E-value=1.7e-14  Score=115.59  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=97.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||||||+|..+..+++.+. +|+++|+ +++++.+++++..++.             .++.+...|+.+   .+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~d~~~---~~~  142 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-------------RVRNYFCCGLQD---FTP  142 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-------------GEEEEEECCGGG---CCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-------------ceEEEEEcChhh---cCC
Confidence            578999999999999999887754 8999999 6699999998876531             357777766543   233


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHh-cCCeEEEe
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~-~~~~v~~v  206 (222)
                      ..++||+|+++.++++...  ...+++.+.++|+|||.+++.......            .....+.+.++ .+|++..+
T Consensus       143 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          143 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            3568999999999987665  558999999999999999997653221            02456666664 58987655


Q ss_pred             cC
Q 027530          207 PK  208 (222)
Q Consensus       207 ~~  208 (222)
                      ..
T Consensus       223 ~~  224 (241)
T 2ex4_A          223 ER  224 (241)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.59  E-value=2.4e-15  Score=124.31  Aligned_cols=123  Identities=15%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhcccccc---------------------
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---------------------  115 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------------------  115 (222)
                      +..+++++|||||||+|..++.+++.  +.+|+++|+ +.+++.|++|+..++......                     
T Consensus        42 ~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 3g07_A           42 PEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR  121 (292)
T ss_dssp             GGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred             hhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            34567899999999999999999987  568999999 569999999876554210000                     


Q ss_pred             ------------------------CCCCCCCCCceEEEEeecCCCcc--ccccCCCccEEEEeccccCcc------CHHH
Q 027530          116 ------------------------NPGSGNLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAEH------LLEP  163 (222)
Q Consensus       116 ------------------------~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~fD~Ii~~d~~y~~~------~~~~  163 (222)
                                              .........++++...|+.....  .....++||+|++..++.+.+      ....
T Consensus       122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                    00000112579999988875431  122467999999999985543      6778


Q ss_pred             HHHHHHHhcCCCeEEEEEE
Q 027530          164 LLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       164 ll~~~~~~l~~~g~~~l~~  182 (222)
                      +++.+.++|+|||.+++..
T Consensus       202 ~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            9999999999999999864

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.59  E-value=3e-14  Score=113.77  Aligned_cols=101  Identities=13%  Similarity=0.009  Sum_probs=83.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++..++              .++.+...|..+.   +. 
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~--------------~~~~~~~~d~~~~---~~-   98 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--------------LKPRLACQDISNL---NI-   98 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--------------CCCEEECCCGGGC---CC-
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcC--------------CCeEEEecccccC---Cc-
Confidence            6789999999999999999999999999999 669999999987654              1567777555432   22 


Q ss_pred             CCCccEEEEec-cccCc---cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .++||+|+++. ++++.   .....+++.+.++|+|||.+++..
T Consensus        99 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A           99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            37899999997 98876   567889999999999999998843

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.5e-14  Score=118.36  Aligned_cols=102  Identities=16%  Similarity=0.101  Sum_probs=86.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHH---hCCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~---~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++.+|||||||+|..+..+++   .+.+|+++|+ +.+++.+++++..+ +            ...++++...|+.+.. 
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~~v~~~~~d~~~~~-  102 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD------------TYKNVSFKISSSDDFK-  102 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-------------CCTTEEEEECCTTCCG-
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC------------CCCceEEEEcCHHhCC-
Confidence            678999999999999999994   4678999999 56999999998875 2            1358899997776543 


Q ss_pred             ccccC------CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVA------PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~------~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                        ...      ++||+|+++.++++. ....+++.+.++|+|||.+++.
T Consensus       103 --~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          103 --FLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             --GGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence              223      789999999999998 9999999999999999999883

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=2e-14  Score=118.15  Aligned_cols=106  Identities=16%  Similarity=0.123  Sum_probs=89.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...++.+|||+|||+|..++.+++.   +++|+++|+ +.+++.+++++..++              .++++...|..+.
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------~~v~~~~~d~~~~   84 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--------------YDSEFLEGDATEI   84 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--------------SEEEEEESCTTTC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--------------CceEEEEcchhhc
Confidence            3446789999999999999999987   579999999 669999999887543              3688888776643


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         +. +++||+|+++.++++......+++.+.++|+|||.+++..+.
T Consensus        85 ---~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           85 ---EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ---CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence               22 468999999999999999999999999999999999987754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.58  E-value=2.2e-14  Score=110.16  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ...+..++....       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.          
T Consensus        18 ~~~~~~~~~~~~-------~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------   80 (192)
T 1l3i_A           18 AMEVRCLIMCLA-------EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL----------   80 (192)
T ss_dssp             CHHHHHHHHHHH-------CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             hHHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            345555555542       3457789999999999999999998889999999 6699999999988764          


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-c
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-S  199 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~  199 (222)
                        ..++.+...|+.+.  .+ ..++||+|+++.++   +....+++.+.++|+|||.+++......  ....+.+.++ .
T Consensus        81 --~~~~~~~~~d~~~~--~~-~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~~~--~~~~~~~~l~~~  150 (192)
T 1l3i_A           81 --GDNVTLMEGDAPEA--LC-KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDL  150 (192)
T ss_dssp             --CTTEEEEESCHHHH--HT-TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHT
T ss_pred             --CcceEEEecCHHHh--cc-cCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecCcc--hHHHHHHHHHHC
Confidence              14678887665431  11 12589999998775   3568899999999999999988775432  2345555553 4


Q ss_pred             CCeEE
Q 027530          200 NFNVK  204 (222)
Q Consensus       200 ~~~v~  204 (222)
                      +|.++
T Consensus       151 g~~~~  155 (192)
T 1l3i_A          151 GFDVN  155 (192)
T ss_dssp             TCCCE
T ss_pred             CCceE
Confidence            56444

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.58  E-value=2.2e-14  Score=114.18  Aligned_cols=106  Identities=13%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|. +++++.+++++..+               .++.+...|..+.. 
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~~d~~~~~-  105 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN---------------LKVKYIEADYSKYD-  105 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC---------------TTEEEEESCTTTCC-
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC---------------CCEEEEeCchhccC-
Confidence            456789999999999999999988  679999999 66999998876533               26788886665432 


Q ss_pred             ccccCCCccEEEEeccccCccCHH--HHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                        . .++||+|+++.++++.....  .+++.+.++|+|||.++++.....
T Consensus       106 --~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          106 --F-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             --C-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             --C-CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence              2 27899999999998876544  599999999999999999886543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.57  E-value=2.1e-14  Score=113.81  Aligned_cols=127  Identities=18%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||||||+|..++.+++.   +++|+++|. +++++.+++|++.+++.            .++++...|..+.  .
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~--l  123 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ------------DKVTILNGASQDL--I  123 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHH--G
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC------------CceEEEECCHHHH--H
Confidence            5689999999999999999974   678999999 67999999999988753            4688888665332  1


Q ss_pred             cccC-----CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh--cCCeEEEec
Q 027530          140 KAVA-----PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK--SNFNVKLVP  207 (222)
Q Consensus       140 ~~~~-----~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~--~~~~v~~v~  207 (222)
                      +...     ++||+|++.....+......++..+ ++|+|||.+++........  ..|.+.++  ..|....++
T Consensus       124 ~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          124 PQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT--PDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             GGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC--HHHHHHHHHCTTEEEEEEE
T ss_pred             HHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch--HHHHHHHhhCCCceEEEcc
Confidence            1112     6899999876554333333456666 8999999988865544332  45555554  245555444

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.57  E-value=4.8e-14  Score=112.63  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=107.1

Q ss_pred             ccccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHh
Q 027530           34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWN  108 (222)
Q Consensus        34 ~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n  108 (222)
                      ...+.|+.-. .||..+...+..    -...+|.+|||||||+|..+..+|.. |.  +|+++|+ ++|++.++++++..
T Consensus        50 ~e~r~w~p~rsklaa~i~~gl~~----l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~  125 (233)
T 4df3_A           50 EEYREWNAYRSKLAAALLKGLIE----LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR  125 (233)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCSC----CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC
T ss_pred             ceeeeECCCchHHHHHHHhchhh----cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh
Confidence            3567888544 456555543210    24568999999999999999999976 43  7999999 67999988876532


Q ss_pred             hccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          109 TSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                                     .++..+..+..+....+.....+|+|++ ++ .+......++..+.+.|||||.++++...|..+
T Consensus       126 ---------------~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~-~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d  188 (233)
T 4df3_A          126 ---------------RNIFPILGDARFPEKYRHLVEGVDGLYA-DV-AQPEQAAIVVRNARFFLRDGGYMLMAIKARSID  188 (233)
T ss_dssp             ---------------TTEEEEESCTTCGGGGTTTCCCEEEEEE-CC-CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             ---------------cCeeEEEEeccCccccccccceEEEEEE-ec-cCChhHHHHHHHHHHhccCCCEEEEEEecccCC
Confidence                           3677777777766555556788999885 43 344556778999999999999999988766542


Q ss_pred             -------HHHHHHHHH-hcCCeEEE
Q 027530          189 -------VHEQMLQMW-KSNFNVKL  205 (222)
Q Consensus       189 -------~~~~f~~~~-~~~~~v~~  205 (222)
                             .+.+-.+.+ +.+|++.+
T Consensus       189 ~~~p~~~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          189 VTTEPSEVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             HHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCChHHHHHHHHHHHHHCCCEEEE
Confidence                   223333444 46897743

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.57  E-value=1.8e-14  Score=115.07  Aligned_cols=102  Identities=18%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||||||+|..+..+++.+. +|+++|. +++++.++++...                .++++...|..+   .+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------------~~~~~~~~d~~~---~~  102 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----------------TGITYERADLDK---LH  102 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----------------SSEEEEECCGGG---CC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----------------CCceEEEcChhh---cc
Confidence            4678999999999999999999998 8999999 5699988876542                256777755543   23


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...++||+|+++.++++......+++.+.++|+|||.+++...
T Consensus       103 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            3467899999999999888899999999999999999998764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.57  E-value=2.1e-14  Score=112.71  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=84.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++    ++             ..++++...|..+.    
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~-------------~~~~~~~~~d~~~~----  102 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG-------------LDNVEFRQQDLFDW----  102 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC-------------CTTEEEEECCTTSC----
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC-------------CCCeEEEecccccC----
Confidence            345679999999999999999999999999999 568988877    22             13688888776543    


Q ss_pred             ccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ...++||+|+++.++++...  ...+++.+.++|+|||.+++....+
T Consensus       103 ~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          103 TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            34679999999999988766  4789999999999999999986543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.56  E-value=3.6e-14  Score=110.15  Aligned_cols=108  Identities=14%  Similarity=0.048  Sum_probs=83.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+|||+|||+|..++.+++. +  .+|+++|+ +++++.+++|+..++..            .++++...|..+...
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~   88 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI------------DRVTLIKDGHQNMDK   88 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG------------GGEEEECSCGGGGGG
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCeEEEECCHHHHhh
Confidence            36789999999999999999876 2  48999999 66999999999987642            478888866543321


Q ss_pred             ccccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                        ..+++||+|+++.+++..         .....+++.+.++|+|||.+++....
T Consensus        89 --~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           89 --YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             --TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             --hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence              235789999988765221         12356899999999999999887643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.56  E-value=4.9e-14  Score=113.38  Aligned_cols=128  Identities=11%  Similarity=0.012  Sum_probs=96.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||||||+|..+..+++.+. +|+++|. +.+++.+++++..+               .++++...|+.+   .+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~~d~~~---~~  153 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---------------PVGKFILASMET---AT  153 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---------------SEEEEEESCGGG---CC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---------------CceEEEEccHHH---CC
Confidence            4678999999999999999888754 6999999 66999999876532               367788766543   23


Q ss_pred             ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcCh-------------hHHHHHHHHHh-cCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------------~~~~~f~~~~~-~~~~v~  204 (222)
                      ..+++||+|+++.++++.  .....+++.+.++|+|||.+++.......             .....+.+.++ .+|++.
T Consensus       154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  233 (254)
T 1xtp_A          154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence            345789999999999887  45788999999999999999998742110             11345555554 589876


Q ss_pred             EecC
Q 027530          205 LVPK  208 (222)
Q Consensus       205 ~v~~  208 (222)
                      .+..
T Consensus       234 ~~~~  237 (254)
T 1xtp_A          234 KEAF  237 (254)
T ss_dssp             EEEE
T ss_pred             Eeee
Confidence            5543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.56  E-value=1.2e-14  Score=115.44  Aligned_cols=122  Identities=11%  Similarity=0.015  Sum_probs=88.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.+|||||||+|..++.+|+..  .+|+++|+ +++++.+++|+..+++             .++.+...|..+.....
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-------------~nv~~~~~Da~~~l~~~  100 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-------------SNLRVMCHDAVEVLHKM  100 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-------------SSEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-------------CcEEEEECCHHHHHHHH
Confidence            56799999999999999999875  46999999 6699999999988774             36888875543321111


Q ss_pred             ccCCCccEEEEe--ccccCccCH------HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcC
Q 027530          141 AVAPPFDYIIGT--DVVYAEHLL------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN  200 (222)
Q Consensus       141 ~~~~~fD~Ii~~--d~~y~~~~~------~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~  200 (222)
                      ..+++||.|+++  ++.......      ..+++.+.++|+|||.++++......  .+...+.+...
T Consensus       101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~--~~~~~~~~~~~  166 (218)
T 3dxy_A          101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY--AEHMLEVMSSI  166 (218)
T ss_dssp             SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH--HHHHHHHHHTS
T ss_pred             cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH--HHHHHHHHHhC
Confidence            346799999988  554333222      35999999999999999998754322  34444545443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.56  E-value=4.8e-15  Score=120.71  Aligned_cols=147  Identities=15%  Similarity=0.185  Sum_probs=95.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcccc---------ccCCCCCC-------C
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRIS---------QMNPGSGN-------L  122 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~---------~~~~~~~~-------~  122 (222)
                      ...+|++|||||||+|..++.++..|+ +|+++|+ +.|++.++++++.+.....         ........       .
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            345788999999999998888888887 5999999 5699999998765421100         00000000       0


Q ss_pred             CCceE-EEEeecCCCcccc-ccCCCccEEEEeccccCc----cCHHHHHHHHHHhcCCCeEEEEEEEEcC----------
Q 027530          123 LGSIQ-AVELDWGNEDHIK-AVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRS----------  186 (222)
Q Consensus       123 ~~~v~-~~~~d~~~~~~~~-~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~l~~~~r~----------  186 (222)
                      ..++. +...|..+..... ...++||+|+++-++++.    +....+++.+.++|||||.++++.....          
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~  211 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF  211 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence            01233 6676655432111 124689999999988752    3456788888999999999999863221          


Q ss_pred             ---hhHHHHHHHHHh-cCCeEEEec
Q 027530          187 ---TSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       187 ---~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                         .-..+.+.+.+. .||++..+.
T Consensus       212 ~~~~~~~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          212 SCVALEKGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             eccccCHHHHHHHHHHCCCEEEEEe
Confidence               012345666664 588876554

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=4.8e-14  Score=113.75  Aligned_cols=101  Identities=12%  Similarity=-0.027  Sum_probs=85.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|. +++++.++++.                  .++.+...|..+.  
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------------------~~~~~~~~d~~~~--   90 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------------------PNTNFGKADLATW--   90 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------------------TTSEEEECCTTTC--
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------------CCcEEEECChhhc--
Confidence            346789999999999999999988  789999999 66999988771                  2567787666543  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       + .+++||+|+++.++++......+++.+.++|+|||.+++....
T Consensus        91 -~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           91 -K-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             -C-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             -C-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence             2 3678999999999999989999999999999999999998753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.56  E-value=2.1e-14  Score=120.61  Aligned_cols=104  Identities=23%  Similarity=0.251  Sum_probs=85.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+..            .++++...|..+.   +
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~------------~~i~~~~~d~~~~---~  100 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFS------------DKITLLRGKLEDV---H  100 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCT------------TTEEEEESCTTTS---C
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCC------------CCEEEEECchhhc---c
Confidence            34678999999999999999999987 799999977999999999988753            5788888766543   2


Q ss_pred             ccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEEE
Q 027530          141 AVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ...++||+|++..+.|   +......++..+.++|+|||.++.
T Consensus       101 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            2347899999986544   456678899999999999999873

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.56  E-value=4.8e-14  Score=110.49  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..++.             .++++...|+.+.   
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~---  137 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL-------------HNVSTRHGDGWQG---  137 (210)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEESCGGGC---
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-------------CceEEEECCcccC---
Confidence            3457789999999999999999999999999999 6699999999988763             3688888666542   


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ....++||+|+++.++.+...      .+.++|+|||++++....
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            223578999999988765442      578899999999998765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.56  E-value=2.2e-14  Score=115.09  Aligned_cols=109  Identities=16%  Similarity=-0.036  Sum_probs=87.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||||||+|..+..+++.+.+|+++|+ +.+++.++++..                ..++++...|..+.....
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~----------------~~~~~~~~~d~~~~~~~~  117 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT----------------AANISYRLLDGLVPEQAA  117 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC----------------CTTEEEEECCTTCHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc----------------ccCceEEECccccccccc
Confidence            446789999999999999999999999999999 569999988762                136788887766532211


Q ss_pred             c--cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          141 A--VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       141 ~--~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .  ....||+|+++.++++..  ....+++.+.++|+|||.+++......
T Consensus       118 ~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          118 QIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             ccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            1  123599999999999877  788999999999999999888876443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.56  E-value=9.8e-15  Score=118.11  Aligned_cols=147  Identities=15%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccc---------cccCCCCCC-------CC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRI---------SQMNPGSGN-------LL  123 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~---------~~~~~~~~~-------~~  123 (222)
                      ..++++|||||||+|..++.+++.+. +|+++|+ +.+++.+++++..+....         .........       ..
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            45678999999999999999999888 8999999 569999998876432000         000000000       00


Q ss_pred             Cce-EEEEeecCCCccc-cccCCCccEEEEecccc----CccCHHHHHHHHHHhcCCCeEEEEEEEEc------------
Q 027530          124 GSI-QAVELDWGNEDHI-KAVAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEIR------------  185 (222)
Q Consensus       124 ~~v-~~~~~d~~~~~~~-~~~~~~fD~Ii~~d~~y----~~~~~~~ll~~~~~~l~~~g~~~l~~~~r------------  185 (222)
                      .++ .+...|..+.... ....++||+|+++.+++    +......+++.+.++|+|||.+++.....            
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  213 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS  213 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence            126 7787776654321 11227899999999998    55577889999999999999999876321            


Q ss_pred             -ChhHHHHHHHHH-hcCCeEEEecC
Q 027530          186 -STSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       186 -~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                       .....+.+.+.+ +.+|++..+..
T Consensus       214 ~~~~~~~~~~~~l~~aGf~~~~~~~  238 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAGYTIEQFEV  238 (265)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccccCHHHHHHHHHHCCCEEEEEEE
Confidence             111234555555 45887765543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.56  E-value=8.3e-14  Score=111.48  Aligned_cols=101  Identities=16%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||||||+|..+..+++.|.+|+++|+ +++++.++++                     +.+...|..+.. .+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------------------~~~~~~d~~~~~-~~   96 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------------------FNVVKSDAIEYL-KS   96 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------------------SEEECSCHHHHH-HT
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------------------cceeeccHHHHh-hh
Confidence            346789999999999999999999999999999 5688887765                     133433322110 02


Q ss_pred             ccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+++||+|+++.++++..  ....+++.+.++|+|||.+++....
T Consensus        97 ~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           97 LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             SCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             cCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            3467999999999998877  5689999999999999999998765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.55  E-value=4.2e-14  Score=107.76  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +.+..|.+++...         ..++.+|||+|||+|..++.+++.+ +|+++|+ +++++.        .         
T Consensus         8 ~~~~~l~~~l~~~---------~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~--------~---------   60 (170)
T 3q87_B            8 EDTYTLMDALERE---------GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES--------H---------   60 (170)
T ss_dssp             HHHHHHHHHHHHH---------TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT--------C---------
T ss_pred             ccHHHHHHHHHhh---------cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc--------c---------
Confidence            4456777776431         2356799999999999999999999 9999999 557776        1         


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC---------HHHHHHHHHHhcCCCeEEEEEEEEcChhH
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTILLGYEIRSTSV  189 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------~~~ll~~~~~~l~~~g~~~l~~~~r~~~~  189 (222)
                           .++++...|+.+..    .+++||+|+++.++++...         ...+++.+.+.+ |||.+++.......  
T Consensus        61 -----~~~~~~~~d~~~~~----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--  128 (170)
T 3q87_B           61 -----RGGNLVRADLLCSI----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--  128 (170)
T ss_dssp             -----SSSCEEECSTTTTB----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--
T ss_pred             -----cCCeEEECChhhhc----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--
Confidence                 25677887765421    2378999999988765332         245677777777 99999998765432  


Q ss_pred             HHHHHHHHh-cCCeEEEecCC
Q 027530          190 HEQMLQMWK-SNFNVKLVPKA  209 (222)
Q Consensus       190 ~~~f~~~~~-~~~~v~~v~~~  209 (222)
                      ...+.+.++ .+|....+...
T Consensus       129 ~~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          129 PKEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEEee
Confidence            245555554 57887666554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.54  E-value=7.7e-14  Score=110.91  Aligned_cols=120  Identities=13%  Similarity=0.098  Sum_probs=89.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +|.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.|++|++.|++.            .++++...|+.+..  +
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------------~~i~~~~~d~l~~l--~   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK------------EKIQVRLANGLAAF--E   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGC--C
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEECchhhhc--c
Confidence            567999999999999999999874  6999999 66999999999999863            47899987764321  1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                       ...+||+|+.+..-  ...+..++......|+++|.+++... ........++.  +.+|.+
T Consensus        81 -~~~~~D~IviaG~G--g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~--~~Gf~i  137 (225)
T 3kr9_A           81 -ETDQVSVITIAGMG--GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQ--DHGFQI  137 (225)
T ss_dssp             -GGGCCCEEEEEEEC--HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHH--HTTEEE
T ss_pred             -cCcCCCEEEEcCCC--hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHH--HCCCEE
Confidence             12269998876553  34567889999999999999877544 33333334433  456765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.54  E-value=2.3e-13  Score=107.39  Aligned_cols=129  Identities=16%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+ +++++.+++|+..+++             .++.+...|+.+... .
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-------------~nv~~~~~d~~~l~~-~  103 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-------------QNVKLLNIDADTLTD-V  103 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-------------SSEEEECCCGGGHHH-H
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-------------CCEEEEeCCHHHHHh-h
Confidence            4678999999999999999987  568999999 6699999999988763             368888866654211 1


Q ss_pred             ccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530          141 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      ..++.||.|+++-+--+..        ....+++.+.++|+|||.+++.....  .......+.+ ..+|....+..
T Consensus       104 ~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          104 FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--GLFEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEES
T ss_pred             cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCccccccc
Confidence            2356899998763321111        13679999999999999999876432  1223333434 34676655443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.54  E-value=3.1e-14  Score=115.42  Aligned_cols=96  Identities=14%  Similarity=0.084  Sum_probs=79.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+++.+.+|+++|+ +++++.++++..                  ++.+...|..+..   . 
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------------------~~~~~~~d~~~~~---~-  107 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------------------DAVLHHGDMRDFS---L-  107 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------------------TSEEEECCTTTCC---C-
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------------------CCEEEECChHHCC---c-
Confidence            4679999999999999999999999999999 669999887643                  4677776665432   2 


Q ss_pred             CCCccEEEEec-cccCc---cCHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +++||+|+++. ++++.   .....+++.+.++|+|||.+++.
T Consensus       108 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          108 GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            67899999997 88775   35667899999999999999985

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.54  E-value=1.2e-13  Score=118.98  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhc-cccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RISQMNPGSGNLLGSIQAVELDWGNEDH-I  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  139 (222)
                      ++++|||+|||+|..++.+++.|+ +|+++|+ +++++.+++|++.|++ .            .++++...|..+... .
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~------------~~v~~~~~D~~~~~~~~  287 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL------------SKAEFVRDDVFKLLRTY  287 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG------------GGEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc------------cceEEEECCHHHHHHHH
Confidence            568999999999999999999876 7999999 6699999999999974 2            368888866543211 1


Q ss_pred             cccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          140 KAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      .....+||+|++.++.+..         .....++..+.++|+|+|.++++......
T Consensus       288 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  344 (396)
T 3c0k_A          288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM  344 (396)
T ss_dssp             HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred             HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            1114689999998876542         45677888999999999999998766543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.54  E-value=1.1e-13  Score=110.27  Aligned_cols=120  Identities=15%  Similarity=0.112  Sum_probs=90.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +|.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.|++|++.|++.            .++++...|+.+..   
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~------------~~I~~~~gD~l~~~---   85 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT------------SKIDVRLANGLSAF---   85 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGC---
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECchhhcc---
Confidence            567999999999999999999874  6999999 56999999999999853            57999986654322   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      ....+||+|+.+...  ...+..++......|+++|.++++.. ........|+.  +.+|.+
T Consensus        86 ~~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIlqp~-~~~~~lr~~L~--~~Gf~i  143 (230)
T 3lec_A           86 EEADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLVLQPN-NREDDLRKWLA--ANDFEI  143 (230)
T ss_dssp             CGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHH--HTTEEE
T ss_pred             ccccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEEECC-CChHHHHHHHH--HCCCEE
Confidence            223379998876665  35677888888889999998877664 33333334433  456765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.53  E-value=3.6e-14  Score=117.36  Aligned_cols=107  Identities=18%  Similarity=0.194  Sum_probs=84.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+++.|.+|+++|+ +++++.+++++..++...          ..++++...|+.+..   . 
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----------~~~v~~~~~d~~~~~---~-  147 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV----------RDRCTLVQGDMSAFA---L-  147 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH----------HTTEEEEECBTTBCC---C-
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc----------ccceEEEeCchhcCC---c-
Confidence            3459999999999999999999999999999 669999999988654210          147889987776532   2 


Q ss_pred             CCCccEEEEe-ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGT-DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~-d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|+++ .++++..  ....+++.+.++|+|||.+++....
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            6789998865 5554433  3678999999999999999987643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.53  E-value=1.7e-13  Score=117.55  Aligned_cols=114  Identities=17%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-I  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  139 (222)
                      .++++|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|++.           ..++++...|..+... .
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~-----------~~~v~~~~~D~~~~l~~~  279 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD-----------MANHQLVVMDVFDYFKYA  279 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC-----------CTTEEEEESCHHHHHHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----------ccceEEEECCHHHHHHHH
Confidence            3678999999999999999999887 7999999 66999999999999852           1178888866543211 1


Q ss_pred             cccCCCccEEEEeccccC-----c----cCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          140 KAVAPPFDYIIGTDVVYA-----E----HLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~-----~----~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      .....+||+|++.++.+.     .    ..+..+++.+.++|+|||.++++......
T Consensus       280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~  336 (385)
T 2b78_A          280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM  336 (385)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence            112458999999887752     1    12445677778999999999998876554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.53  E-value=2.7e-14  Score=111.59  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=82.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.++..  +.+|+++|. +++++.+++|+..++.             .++++...|+.+..   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~~---  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-------------ENIEPVQSRVEEFP---  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------------SSEEEEECCTTTSC---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CCeEEEecchhhCC---
Confidence            5789999999999999999986  568999999 6699999999998764             24888887776543   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       ..++||+|+++.+    .....+++.+.++|+|||.+++.....
T Consensus       129 -~~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~  168 (207)
T 1jsx_A          129 -SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQM  168 (207)
T ss_dssp             -CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred             -ccCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             2468999997643    467889999999999999998875543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.53  E-value=3.6e-13  Score=114.12  Aligned_cols=148  Identities=18%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccc------cchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTV------WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG   86 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~------W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g   86 (222)
                      .+.+.+.+..+.+..+..+...-.+-      .+-...++..+...       ....++.+|||+|||+|..++.++..+
T Consensus       153 ~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~-------~~~~~~~~vLD~gcGsG~~~ie~a~~~  225 (354)
T 3tma_A          153 RVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRL-------ADARPGMRVLDPFTGSGTIALEAASTL  225 (354)
T ss_dssp             EEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHH-------TTCCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHH-------hCCCCCCEEEeCCCCcCHHHHHHHHhh
Confidence            46666777777776654322222121      22334566666554       234567899999999999999999875


Q ss_pred             ---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc---
Q 027530           87 ---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---  159 (222)
Q Consensus        87 ---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~---  159 (222)
                         .+|+++|+ +++++.+++|++.+++             .++++.+.|..+   .+.....||+|++++++....   
T Consensus       226 ~~~~~v~g~Di~~~~i~~a~~n~~~~g~-------------~~i~~~~~D~~~---~~~~~~~~D~Ii~npPyg~r~~~~  289 (354)
T 3tma_A          226 GPTSPVYAGDLDEKRLGLAREAALASGL-------------SWIRFLRADARH---LPRFFPEVDRILANPPHGLRLGRK  289 (354)
T ss_dssp             CTTSCEEEEESCHHHHHHHHHHHHHTTC-------------TTCEEEECCGGG---GGGTCCCCSEEEECCCSCC----C
T ss_pred             CCCceEEEEECCHHHHHHHHHHHHHcCC-------------CceEEEeCChhh---CccccCCCCEEEECCCCcCccCCc
Confidence               68999999 6699999999998874             268888866544   333345699999988754311   


Q ss_pred             -----CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          160 -----LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       160 -----~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                           ....+++.+.++|+|||.+++...
T Consensus       290 ~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          290 EGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence                 136788999999999999998765

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.53  E-value=6.4e-14  Score=109.79  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..+..+   +. +|+++|. +++++.++++.  .                ++.+...|..+   .+.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----------------~~~~~~~d~~~---~~~   91 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----------------EATWVRAWGEA---LPF   91 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----------------TSEEECCCTTS---CCS
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----------------CcEEEEccccc---CCC
Confidence            6789999999999988877   77 8999999 56999888875  1                45666655443   333


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      .+++||+|+++.++++......+++.+.++|+|||.++++...+..
T Consensus        92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            4678999999999999889999999999999999999998876654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.53  E-value=1.1e-13  Score=112.81  Aligned_cols=110  Identities=13%  Similarity=0.044  Sum_probs=88.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hh------hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEe
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IE------VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVEL  131 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~  131 (222)
                      ..++.+|||||||+|..++.+++. |  .+|+++|. ++      +++.+++++..++..            .++++...
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~------------~~v~~~~~  108 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG------------DRLTVHFN  108 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG------------GGEEEECS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC------------CceEEEEC
Confidence            346789999999999999999987 4  68999998 44      899999999876532            47888876


Q ss_pred             e-cCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          132 D-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       132 d-~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      | +.. ...+..+++||+|+++.++++......+++.+..+++|||.+++....
T Consensus       109 d~~~~-~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          109 TNLSD-DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CCTTT-CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             Chhhh-ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            6 322 223334678999999999999888888888888888899999987654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=6.8e-14  Score=114.54  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=84.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                  .++.+...|..+.   +.
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~~~~~d~~~~---~~  114 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------------------PHLHFDVADARNF---RV  114 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------------TTSCEEECCTTTC---CC
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------------------CCCEEEECChhhC---Cc
Confidence            36789999999999999999998889999999 56999888764                  1456677665542   22


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       +++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus       115 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          115 -DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             -SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             -CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence             5789999999999998899999999999999999999987654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.53  E-value=6.7e-14  Score=118.51  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|++.            .++++...|+.+..   
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~------------~~v~~~~~d~~~~~---  112 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLT------------DRIVVIPGKVEEVS---  112 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCT------------TTEEEEESCTTTCC---
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcchhhCC---
Confidence            45788999999999999999999876 899999977889999999988742            57899987776542   


Q ss_pred             ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       ..++||+|++..+.++.  +.....+..+.++|+|||.+++..
T Consensus       113 -~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          113 -LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             -CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             -CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence             23689999999887754  345567777889999999998653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=3.8e-14  Score=116.11  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|..++.+++.+.  +|+++|. +++++.+++|++.|++             .++.+...|..+. .
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-------------~~~~~~~~d~~~~-~  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-------------NNVIPILADNRDV-E  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-------------SSEEEEESCGGGC-C
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CCEEEEECChHHc-C
Confidence            34678999999999999999998854  8999999 6799999999999985             3677888666543 1


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                         ..++||+|+++++.    ....++..+.+.|+|||.++++....
T Consensus       183 ---~~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          183 ---LKDVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             ---CTTCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ---ccCCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence               15689999988774    56678889999999999999988765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.52  E-value=4.2e-14  Score=116.30  Aligned_cols=109  Identities=15%  Similarity=0.055  Sum_probs=87.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..+..+++.+. +|+++|+ +++++.+++++..++.            ..++.+...|..+...  
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~~~--  128 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR------------RFKVFFRAQDSYGRHM--  128 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC------------SSEEEEEESCTTTSCC--
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CccEEEEECCcccccc--
Confidence            3668999999999999998888876 8999999 6699999999886542            2467888877654321  


Q ss_pred             ccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..+++||+|+++.++++    ......+++.+.++|+|||.+++..+..
T Consensus       129 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          129 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            13578999999998865    4556789999999999999999987653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.52  E-value=6.6e-14  Score=110.41  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=74.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+|.+|||||||+|..+..+++..  .+|+++|+ ++|++.+.++++..               .++.+...|..+....
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---------------~~v~~~~~d~~~~~~~  120 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---------------NNIIPLLFDASKPWKY  120 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---------------SSEEEECSCTTCGGGT
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---------------CCeEEEEcCCCCchhh
Confidence            467899999999999999988774  58999999 55887776655432               2566665554432111


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ....++||+|+++ + ........+++.+.++|||||.++++.+.
T Consensus       121 ~~~~~~fD~V~~~-~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~  163 (210)
T 1nt2_A          121 SGIVEKVDLIYQD-I-AQKNQIEILKANAEFFLKEKGEVVIMVKA  163 (210)
T ss_dssp             TTTCCCEEEEEEC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccccceeEEEEe-c-cChhHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            1124789999987 2 22333445689999999999999998654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.52  E-value=1.9e-13  Score=110.30  Aligned_cols=128  Identities=17%  Similarity=0.153  Sum_probs=93.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||||||+|..++.+++.   +.+|+++|+ +++++.+++|++.+++.            .++++...|..+....
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~l~~  130 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD------------QRVTLREGPALQSLES  130 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHh
Confidence            5689999999999999999987   678999999 67999999999988742            4788888665432111


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCeEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVKL  205 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~v~~  205 (222)
                      ....++||+|++...   ......+++.+.++|+|||.+++.......            .....|.+.+..  .|....
T Consensus       131 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (248)
T 3tfw_A          131 LGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATA  207 (248)
T ss_dssp             CCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             cCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEE
Confidence            112348999997542   456678999999999999998876543321            124567766643  455554


Q ss_pred             e
Q 027530          206 V  206 (222)
Q Consensus       206 v  206 (222)
                      +
T Consensus       208 l  208 (248)
T 3tfw_A          208 L  208 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.52  E-value=1.3e-13  Score=108.99  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=93.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      ++++|||||||+|..++.+++.   +.+|+++|. +++++.+++|+..++..            .++++...|..+... 
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~  125 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN------------DRVEVRTGLALDSLQQ  125 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence            5689999999999999999987   679999999 67999999999987742            468888866543211 


Q ss_pred             cccc-CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCeE
Q 027530          139 IKAV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV  203 (222)
Q Consensus       139 ~~~~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~v  203 (222)
                      .... ..+||+|++...   ......+++.+.++|+|||.+++.......            .....|.+.+..  .+..
T Consensus       126 ~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  202 (223)
T 3duw_A          126 IENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSA  202 (223)
T ss_dssp             HHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEE
Confidence            1111 257999997644   456678999999999999987775443321            124667776643  4555


Q ss_pred             EEec
Q 027530          204 KLVP  207 (222)
Q Consensus       204 ~~v~  207 (222)
                      ..++
T Consensus       203 ~~~p  206 (223)
T 3duw_A          203 TALQ  206 (223)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.52  E-value=1e-13  Score=117.11  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.+|||+|||+|..++.+++.+  .+|+++|. +.+++.+++|+..++.              .+++...|..+.    
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------------~~~~~~~d~~~~----  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--------------EGEVFASNVFSE----  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--------------CCEEEECSTTTT----
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CCEEEEcccccc----
Confidence            35689999999999999999887  47999999 5699999999998763              235555444322    


Q ss_pred             ccCCCccEEEEeccccC-----ccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~-----~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                       ..++||+|++++++++     ......+++.+.++|+|||.+++.....
T Consensus       258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence             2568999999998764     3446779999999999999999877643

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=9.3e-14  Score=111.77  Aligned_cols=103  Identities=20%  Similarity=0.271  Sum_probs=81.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++..++              .++.+...|+.+.   + 
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------------~~v~~~~~d~~~~---~-  101 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--------------LKIEFLQGDVLEI---A-  101 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCCEEEESCGGGC---C-
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcC--------------CceEEEECChhhc---c-
Confidence            35679999999999999999999999999999 669999999988665              2577887666543   2 


Q ss_pred             cCCCccEEEEec-cc-c-CccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTD-VV-Y-AEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d-~~-y-~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..++||+|++.. .+ | .......+++.+.++|+|||.+++..+
T Consensus       102 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~  146 (252)
T 1wzn_A          102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (252)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            246899999752 22 2 234567899999999999999987654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.52  E-value=4.1e-15  Score=119.16  Aligned_cols=101  Identities=18%  Similarity=0.082  Sum_probs=83.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.|.+|+++|+ +++++.+++|+..+++.            .++++...|+.+..    .
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~----~  141 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIA------------DKIEFICGDFLLLA----S  141 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHG----G
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC------------cCeEEEECChHHhc----c
Confidence            6789999999999999999999999999999 66999999999988742            47888886665332    3


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ..+||+|++++++++.......+..+.++|+|||.+++
T Consensus       142 ~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          142 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence            57899999999888766665566677888999987554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.52  E-value=5.7e-14  Score=116.60  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=85.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHH-H-h-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMA-L-L-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la-~-~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+|||+|||+|..++.++ . . +.+|+++|+ +++++.+++|+..++..            .++++...|+.+.  
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~--  182 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA------------GQITLHRQDAWKL--  182 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG------------GGEEEEECCGGGC--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC------------CceEEEECchhcC--
Confidence            467899999999999999885 2 2 568999999 66999999999877642            4689998776543  


Q ss_pred             ccccCCCccEEEEeccccCccCHHH---HHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEP---LLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~---ll~~~~~~l~~~g~~~l~~~  183 (222)
                       +.. ++||+|+++.++++......   +++.+.++|+|||.+++...
T Consensus       183 -~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          183 -DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             -CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             -Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence             223 78999999999987665554   79999999999999998773

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=4.1e-14  Score=114.89  Aligned_cols=112  Identities=18%  Similarity=0.090  Sum_probs=87.4

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      ..+++.+....       ...++.+|||||||+|..+..+++.+++|+++|+ +.+++.++++.                
T Consensus        20 ~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----------------   76 (261)
T 3ege_A           20 IRIVNAIINLL-------NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----------------   76 (261)
T ss_dssp             HHHHHHHHHHH-------CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----------------
T ss_pred             HHHHHHHHHHh-------CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----------------
Confidence            34566665542       2346789999999999999999999999999999 55776554322                


Q ss_pred             CCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         ++++...|+.+   .+..+++||+|+++.++++......+++.+.++|+ ||.+++....
T Consensus        77 ---~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           77 ---QVEWFTGYAEN---LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             ---TEEEECCCTTS---CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             ---CCEEEECchhh---CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence               46777766543   33446799999999999999999999999999999 9977776654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.51  E-value=1.6e-13  Score=110.20  Aligned_cols=120  Identities=13%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +|.+|||+|||+|.+++.+++.+.  +|+++|+ +.+++.|++|++.|++.            .++++...|+.+..   
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~------------~~I~v~~gD~l~~~---   85 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT------------EQIDVRKGNGLAVI---   85 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT------------TTEEEEECSGGGGC---
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------ceEEEEecchhhcc---
Confidence            567999999999999999999874  6999999 56999999999999853            47899886654322   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      ....+||+|+.+...  ...+..++......|++++.++++... .......|+.  +.+|.+
T Consensus        86 ~~~~~~D~IviagmG--g~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~--~~Gf~i  143 (244)
T 3gnl_A           86 EKKDAIDTIVIAGMG--GTLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSE--QNNWLI  143 (244)
T ss_dssp             CGGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHH--HHTEEE
T ss_pred             CccccccEEEEeCCc--hHHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHH--HCCCEE
Confidence            122369998876554  355778888888899999988776543 3333344433  346665

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.51  E-value=3.6e-13  Score=115.68  Aligned_cols=107  Identities=16%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +|++|||+|||+|..++.+++.|++|+++|+ +.+++.+++|++.|++.              ..+...|..+.  ....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--------------~~~~~~D~~~~--l~~~  277 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--------------VDIRHGEALPT--LRGL  277 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--------------CEEEESCHHHH--HHTC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--------------CcEEEccHHHH--HHHh
Confidence            4889999999999999999999999999999 56999999999999853              13344333221  1111


Q ss_pred             CCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          143 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      .+.||+|+++++.+..         .....++..+.++|+|||.++++.....
T Consensus       278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            3449999998776542         2345788888999999999986665443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.51  E-value=9.8e-14  Score=113.60  Aligned_cols=121  Identities=13%  Similarity=0.079  Sum_probs=92.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ +.             .++++...|+.+.
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-------------~~v~~~~~d~~~~  174 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-------------GNVRTSRSDIADF  174 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-------------TTEEEECSCTTTC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------------CcEEEEECchhcc
Confidence            446789999999999999999987   679999999 67999999999877 52             3688888776542


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v  206 (222)
                          ..+++||+|++.     ......+++.+.++|+|||.+++......  ....+.+.++ .+|....+
T Consensus       175 ----~~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          175 ----ISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             ----CCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEE
T ss_pred             ----CcCCCccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEE
Confidence                234689999983     33556899999999999999999876432  2345555554 46765443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.51  E-value=9.5e-14  Score=114.27  Aligned_cols=154  Identities=15%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhcc---------ccccCCCCCC--------CC
Q 027530           63 LKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSR---------ISQMNPGSGN--------LL  123 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~---------~~~~~~~~~~--------~~  123 (222)
                      .++.+|||||||+|...+.++. .+.+|+++|+ ++|++.+++++......         +.........        ..
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999996655554 3678999999 56999998866431100         0000000000        00


Q ss_pred             CceEEEEeecCCCccc---cccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCCCeEEEEEEEEcC----------
Q 027530          124 GSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRS----------  186 (222)
Q Consensus       124 ~~v~~~~~d~~~~~~~---~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~~g~~~l~~~~r~----------  186 (222)
                      ..+.+...|..+....   ...+++||+|+++.++++    ......+++.+.++|||||.+++......          
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~  229 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  229 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence            1244555555442111   122457999999999987    55678899999999999999998742211          


Q ss_pred             ---hhHHHHHHHHHh-cCCeEEEecCCCCCcccC
Q 027530          187 ---TSVHEQMLQMWK-SNFNVKLVPKAKESTMWG  216 (222)
Q Consensus       187 ---~~~~~~f~~~~~-~~~~v~~v~~~~~~~~~~  216 (222)
                         ......+.+.++ .+|++..+.....+..|.
T Consensus       230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~  263 (289)
T 2g72_A          230 TVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQ  263 (289)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGC
T ss_pred             eeccCCHHHHHHHHHHcCCeEEEeeEeecccccc
Confidence               112455666664 588876665544333333

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.51  E-value=1.4e-14  Score=111.65  Aligned_cols=101  Identities=7%  Similarity=0.037  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ...+|||||||+|.+++.++..  +++|+++|+ +.|++.+++|+..++..            .++.+  .|.   .. .
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~------------~~v~~--~d~---~~-~  110 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT------------IKYRF--LNK---ES-D  110 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS------------SEEEE--ECC---HH-H
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------------ccEEE--ecc---cc-c
Confidence            3569999999999999999877  568999999 55999999999998753            24555  222   21 2


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...++||+|++..+++.....+..+..+.+.|+|+|.+ |+.+
T Consensus       111 ~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvf-ISfp  152 (200)
T 3fzg_A          111 VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFV-ISFP  152 (200)
T ss_dssp             HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEE-EEEE
T ss_pred             CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEE-EEeC
Confidence            34678999999999987755556666899999999875 5555

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.50  E-value=8.6e-14  Score=114.70  Aligned_cols=121  Identities=15%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      +.+..+.+++....       ...++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|+..+++.      
T Consensus       106 ~~te~lv~~~l~~~-------~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~------  172 (284)
T 1nv8_A          106 PETEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS------  172 (284)
T ss_dssp             TTHHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT------
T ss_pred             hhHHHHHHHHHHHh-------cccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------
Confidence            34556666665442       1125579999999999999999988 778999999 66999999999988743      


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCc---cEEEEeccccCccC-------------------HHHHHHHHH-HhcCC
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPF---DYIIGTDVVYAEHL-------------------LEPLLQTIF-ALSGP  174 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~f---D~Ii~~d~~y~~~~-------------------~~~ll~~~~-~~l~~  174 (222)
                            .++++...||.+..     .++|   |+|++++++.....                   -..+++.+. +.++|
T Consensus       173 ------~~v~~~~~D~~~~~-----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~p  241 (284)
T 1nv8_A          173 ------DRFFVRKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTS  241 (284)
T ss_dssp             ------TSEEEEESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCT
T ss_pred             ------CceEEEECcchhhc-----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCC
Confidence                  36899998886532     2468   99999976542110                   116788899 99999


Q ss_pred             CeEEEEEEEE
Q 027530          175 KTTILLGYEI  184 (222)
Q Consensus       175 ~g~~~l~~~~  184 (222)
                      ||.+++....
T Consensus       242 gG~l~~e~~~  251 (284)
T 1nv8_A          242 GKIVLMEIGE  251 (284)
T ss_dssp             TCEEEEECCT
T ss_pred             CCEEEEEECc
Confidence            9999886543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.50  E-value=7.3e-14  Score=112.67  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=80.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHh---hccccc---------cCCC----CCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWN---TSRISQ---------MNPG----SGNL  122 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n---~~~~~~---------~~~~----~~~~  122 (222)
                      ++.+|||+|||+|..++.+++.    +.+|+++|+ +++++.+++|+..+   ++....         ....    ....
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999977    468999999 66999999998876   432000         0000    0000


Q ss_pred             CCceE-------------EEEeecCCCcccc--ccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEE
Q 027530          123 LGSIQ-------------AVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTI  178 (222)
Q Consensus       123 ~~~v~-------------~~~~d~~~~~~~~--~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~  178 (222)
                      ..+++             +...|+.+.....  ....+||+|++++++....         ....+++.+.++|+|||.+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence            00144             7776665422100  0234899999998765432         2457899999999999999


Q ss_pred             EEEEE
Q 027530          179 LLGYE  183 (222)
Q Consensus       179 ~l~~~  183 (222)
                      +++..
T Consensus       211 ~~~~~  215 (250)
T 1o9g_A          211 AVTDR  215 (250)
T ss_dssp             EEEES
T ss_pred             EEeCc
Confidence            98543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.50  E-value=2.4e-14  Score=114.50  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||||||+|..+..+++.+. +|+++|. ++|++.++++...++              .++.+...|+.+.. .+.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------------~~v~~~~~d~~~~~-~~~  124 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVA-PTL  124 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHG-GGS
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--------------CCeEEEecCHHHhh-ccc
Confidence            567999999999999999988766 7999999 569999999876543              36788886664321 133


Q ss_pred             cCCCccEEEE-ecccc----CccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIG-TDVVY----AEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~-~d~~y----~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+++||+|++ .-.+.    +......+++.+.++|||||++++..
T Consensus       125 ~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            4678999998 33321    12234467999999999999988764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.50  E-value=1e-12  Score=111.99  Aligned_cols=106  Identities=12%  Similarity=0.052  Sum_probs=87.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++...++            ..++++...|..+.  . 
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l------------~~~v~~~~~d~~~~--~-  265 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL------------ADRCEILPGDFFET--I-  265 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC------------TTTEEEEECCTTTC--C-
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc------------CCceEEeccCCCCC--C-
Confidence            35679999999999999999987  4589999997799999999987653            25799999777521  1 


Q ss_pred             ccCCCccEEEEeccccCccCHH--HHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                        +..||+|++..++++.....  .+++.+.+.|+|||++++.....
T Consensus       266 --p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          266 --PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             --CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred             --CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence              22799999999998766554  79999999999999999987653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.50  E-value=3.5e-13  Score=111.02  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=81.6

Q ss_pred             CCCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G-~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...++.+|||||||+| +.++.+++ .|++|+++|+ +++++.|+++++..++             .++++...|..+  
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-------------~~v~~v~gDa~~--  183 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-------------DGVNVITGDETV--  183 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-------------CSEEEEESCGGG--
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-------------CCeEEEECchhh--
Confidence            3457899999999997 45566776 4889999999 6799999999987763             478888855433  


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       .+  +++||+|+.+..   ......+++.+.+.|+|||++++...
T Consensus       184 -l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          184 -ID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -GG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -CC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             32  578999997654   46778999999999999999988663

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.50  E-value=6.2e-14  Score=109.73  Aligned_cols=116  Identities=17%  Similarity=0.222  Sum_probs=88.9

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ..+.+++...         ..++.+|||+|||+|..++.+++.+. +|+++|+ +.+++.++++...             
T Consensus        30 ~~~~~~l~~~---------~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-------------   87 (215)
T 2pxx_A           30 SSFRALLEPE---------LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------------   87 (215)
T ss_dssp             HHHHHHHGGG---------CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------------
T ss_pred             HHHHHHHHHh---------cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------------
Confidence            3466666543         23568999999999999999999987 7999999 5699999988652             


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCc---------------cCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------HLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---------------~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                        ..++.+...|..+.   +..+++||+|+++.++.+.               .....+++.+.++|+|||.+++....+
T Consensus        88 --~~~i~~~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           88 --VPQLRWETMDVRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             --CTTCEEEECCTTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             --CCCcEEEEcchhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence              13677887666543   3345789999998877432               245779999999999999998877644

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.49  E-value=2.6e-13  Score=108.31  Aligned_cols=100  Identities=18%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++. .+|+++|. +++++.+++++..++              .++++...|..+.   +. 
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--------------~~~~~~~~d~~~~---~~-   93 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--------------RHVDFWVQDMREL---EL-   93 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--------------CCCEEEECCGGGC---CC-
T ss_pred             CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--------------CceEEEEcChhhc---CC-
Confidence            4579999999999999999988 89999999 669999999987654              3567777665432   22 


Q ss_pred             CCCccEEEEec-cccCc---cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d-~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .++||+|++.. ++++.   .....+++.+.++|+|||.+++..
T Consensus        94 ~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           94 PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            37899999874 77665   456778999999999999998854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.49  E-value=8.8e-14  Score=112.79  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++...                 +  +...|..+   .+..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~-----------------~--~~~~d~~~---~~~~  111 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----------------N--VVEAKAED---LPFP  111 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----------------C--EEECCTTS---CCSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC-----------------C--EEECcHHH---CCCC
Confidence            6789999999999999999999999999999 5699988876431                 1  44444432   3334


Q ss_pred             CCCccEEEEeccccC-ccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          143 APPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      +++||+|++..++++ ......+++.+.++|+|||.+++....+.
T Consensus       112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            678999999876654 36688999999999999999999887653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.49  E-value=6.9e-14  Score=111.16  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+++|+++|+ +++++.++++    .              .++++...|+.+.  .+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~--------------~~~~~~~~d~~~~--~~~  106 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----A--------------PHADVYEWNGKGE--LPA  106 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----C--------------TTSEEEECCSCSS--CCT
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----C--------------CCceEEEcchhhc--cCC
Confidence            35789999999999999999999999999999 6699999887    1              2578888777532  333


Q ss_pred             c-CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530          142 V-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       142 ~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      . +++||+|+++      .....+++.+.++|+|||.++........   ..+.+.+ +.+|....+..
T Consensus       107 ~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          107 GLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGPRLNV---PEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             TCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEESSSCC---THHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeCCcCCH---HHHHHHHHHCCCeEEEEEe
Confidence            3 6789999988      24567889999999999998822222222   3444444 34776655443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.49  E-value=2.8e-13  Score=108.24  Aligned_cols=101  Identities=13%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|||||||+|..++.+++  .+.+|+++|+ +++++.+++|++.+++.            .++++...|..+.  .+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~--~~  136 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE------------NQVRIIEGNALEQ--FE  136 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT------------TTEEEEESCGGGC--HH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECCHHHH--HH
Confidence            568999999999999999998  4678999999 67999999999987742            4789988666533  22


Q ss_pred             -ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          141 -AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       141 -~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       ...++||+|++...   ......+++.+.++|+|||.+++.
T Consensus       137 ~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          137 NVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             HHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEe
Confidence             23578999997643   556788999999999999998773

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.49  E-value=2.4e-13  Score=107.60  Aligned_cols=130  Identities=18%  Similarity=0.096  Sum_probs=93.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.++++++.++..            .++++...|..+....
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~  131 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS------------DKIGLRLSPAKDTLAE  131 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC------------CceEEEeCCHHHHHHH
Confidence            5679999999999999999986   678999999 66999999999987742            4688888665332111


Q ss_pred             ccc---CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCe
Q 027530          140 KAV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFN  202 (222)
Q Consensus       140 ~~~---~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~  202 (222)
                      ...   .++||+|+....   ......+++.+.++|+|||.+++.......            .....|.+.+..  .+.
T Consensus       132 ~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  208 (225)
T 3tr6_A          132 LIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVD  208 (225)
T ss_dssp             HHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEE
T ss_pred             hhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeE
Confidence            101   178999996543   455778999999999999999886543221            134566666643  455


Q ss_pred             EEEecC
Q 027530          203 VKLVPK  208 (222)
Q Consensus       203 v~~v~~  208 (222)
                      ...+|.
T Consensus       209 ~~~lp~  214 (225)
T 3tr6_A          209 MILIPI  214 (225)
T ss_dssp             EEEECS
T ss_pred             EEEEEc
Confidence            555543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.49  E-value=6.7e-14  Score=123.18  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=83.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||||||+|.+++.+++.++ +|+++|.+++++.+++|++.|++.            .++++...|+.+..   
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~------------~~v~~~~~d~~~~~---  220 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLT------------DRIVVIPGKVEEVS---  220 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCT------------TTEEEEESCTTTCC---
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCC------------CcEEEEECchhhCc---
Confidence            34678999999999999999999876 899999966999999999988752            57999998876532   


Q ss_pred             ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       ..++||+|+++.++|+.  +.....+..+.++|+|||.+++.
T Consensus       221 -~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          221 -LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             -CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             -cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence             23589999998887754  33345666778899999999854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.49  E-value=2.3e-13  Score=113.03  Aligned_cols=115  Identities=10%  Similarity=0.029  Sum_probs=77.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc---c
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED---H  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~  138 (222)
                      .+.+|||||||+|.....++.. +++|+|+|+ ++|++.|++.....+....       ...-.+++...+.....   .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~-------~~~~~~~f~~~d~~~d~~~~~  120 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK-------TKYYKFDYIQETIRSDTFVSS  120 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC-----------CCCEEEEEECCTTSSSHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc-------ccccccchhhhhcccchhhhh
Confidence            4789999999999655544544 468999999 5699999987765431100       00002455554442211   1


Q ss_pred             c--cccCCCccEEEEeccccC---ccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 I--KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~--~~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +  ...+++||+|++..++++   ......+++.+.++|+|||.++++.+.+
T Consensus       121 l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          121 VREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             HHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            1  123578999999888753   2456889999999999999999887653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.48  E-value=3.1e-13  Score=107.82  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=81.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..+..+++. |  .+|+++|+ +++++.+.++++.+.               ++.+...|..+..
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~---------------~v~~~~~d~~~~~  139 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT---------------NIIPVIEDARHPH  139 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT---------------TEEEECSCTTCGG
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC---------------CeEEEEcccCChh
Confidence            346789999999999999999976 3  58999999 568888888887652               6788887766543


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+...++||+|+++.+  .......++..+.++|+|||.+++....
T Consensus       140 ~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          140 KYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             GGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             hhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            23334678999998654  2333455788899999999999997665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.48  E-value=2.5e-14  Score=114.79  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|.+|||||||+|..+..+++.. .+||++|+ +++++.++++....+              .++.+...+|.+.. ...
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--------------~~~~~~~~~a~~~~-~~~  124 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVA-PTL  124 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHG-GGS
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--------------CceEEEeehHHhhc-ccc
Confidence            67899999999999999998875 47999999 679999999877554              36777777765432 123


Q ss_pred             cCCCccEEEEecc-----ccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDV-----VYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~-----~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+++||.|+...+     ..+......+++.+.++|||||++.+..
T Consensus       125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4678999975332     2334456779999999999999987754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.48  E-value=9.1e-14  Score=113.95  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=91.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|++.            +++++.+.|..+..    
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~------------~~v~~~~~D~~~~~----  188 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFP----  188 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCC----
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEeCcHHHhc----
Confidence            678999999999999999999985 7999999 77999999999999864            57888887765432    


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----hHHHHHHHHHh-cCCeEEEec
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      ....||.|+++++.+.    ..++..+.++|++||.+.+-......    ...+.+.+..+ .++.++.+.
T Consensus       189 ~~~~~D~Vi~~~p~~~----~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~  255 (278)
T 3k6r_A          189 GENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             CCSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCEEEECCCCcH----HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence            2568999998877543    35667777889999988664433222    12233333333 466665443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.48  E-value=3.4e-13  Score=116.04  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=86.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-cc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (222)
                      ++++|||+|||+|..++.+++.|+ +|+++|+ +++++.+++|++.|++.            .++++...|+.+... ..
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~------------~~v~~~~~d~~~~~~~~~  284 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------------DRMKFIVGSAFEEMEKLQ  284 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------ccceEEECCHHHHHHHHH
Confidence            678999999999999999999876 7999999 66999999999999853            378888866543211 11


Q ss_pred             ccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          141 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      ....+||+|++.++.+..         .....++..+.++|+|||.++++.....
T Consensus       285 ~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          285 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             hhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            125689999998876553         3356788888999999999888766544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.48  E-value=3.6e-13  Score=108.64  Aligned_cols=115  Identities=13%  Similarity=0.094  Sum_probs=88.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+++.            .++++...|+.+.
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~  157 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD------------DRVTIKLKDIYEG  157 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT------------TTEEEECSCGGGC
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC------------CceEEEECchhhc
Confidence            3457889999999999999999988   568999999 67999999999988743            3588888776532


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                          ....+||+|+++.     .....+++.+.++|+|||.+++..+...  ....+.+.++
T Consensus       158 ----~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~  208 (255)
T 3mb5_A          158 ----IEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLR  208 (255)
T ss_dssp             ----CCCCSEEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             ----cCCCCcCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHH
Confidence                2356799999853     3456789999999999999988765332  2344444443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.48  E-value=1.3e-13  Score=113.83  Aligned_cols=110  Identities=14%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHH----Hh--CCEE--EEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           63 LKGKRVIELGAGCGVAGFGMA----LL--GCNV--ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la----~~--g~~v--~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      .++.+|||||||+|.++..++    ..  +..|  +++|. ++|++.+++++.....            ..++.+...+ 
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~------------~~~v~~~~~~-  117 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN------------LENVKFAWHK-  117 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS------------CTTEEEEEEC-
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC------------CCcceEEEEe-
Confidence            356799999999997765332    22  3434  99999 5699999988764210            1234433211 


Q ss_pred             CCCcccc------ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          134 GNEDHIK------AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       134 ~~~~~~~------~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .+.....      ..+++||+|+++.++++..+...+++.+.++|||||.++++....
T Consensus       118 ~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             SCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            1222211      236789999999999999999999999999999999999886543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.47  E-value=6.4e-13  Score=111.33  Aligned_cols=106  Identities=16%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++..+++.            .++++...|+.+..   
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~---  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVA------------SRYHTIAGSAFEVD---  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCG------------GGEEEEESCTTTSC---
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCC------------cceEEEecccccCC---
Confidence            35679999999999999999987  56899999999999999999877642            47899987765431   


Q ss_pred             ccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       ....||+|+++.++++.  +....+++.+.++|+|||.+++....
T Consensus       229 -~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          229 -YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             -CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence             13359999999999876  44578999999999999999887754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=5.9e-13  Score=104.63  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=80.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.             .++.+...|....
T Consensus        74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~~~  140 (215)
T 2yxe_A           74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-------------DNVIVIVGDGTLG  140 (215)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-------------TTEEEEESCGGGC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CCeEEEECCcccC
Confidence            34567899999999999999999875   68999999 6699999999987763             2577777665321


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                         .....+||+|+++.++++..      +.+.++|+|||.+++.....
T Consensus       141 ---~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          141 ---YEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             ---CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             ---CCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence               11246899999998886543      57889999999999887543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.47  E-value=5.1e-13  Score=106.42  Aligned_cols=103  Identities=15%  Similarity=0.096  Sum_probs=77.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      .++.+|||+|||+|..++.+++. + .+|+++|+ +++++.+++|++.+               .++.+...|..+... 
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------~~v~~~~~d~~~~~~~  137 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---------------ENIIPILGDANKPQEY  137 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---------------TTEEEEECCTTCGGGG
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---------------CCeEEEECCCCCcccc
Confidence            46789999999999999999987 4 68999999 66999999887643               367888766654221 


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ... ..+||+|+. ++ ........+++.+.++|+|||.++++..
T Consensus       138 ~~~-~~~~D~v~~-~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~  179 (230)
T 1fbn_A          138 ANI-VEKVDVIYE-DV-AQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             TTT-SCCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccc-CccEEEEEE-ec-CChhHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            222 368999993 22 1222347789999999999999999744

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.46  E-value=1.2e-12  Score=112.07  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  141 (222)
                      ++++|||+|||+|..++.+++.+.+|+++|+ +++++.+++|++.|++.             ++++...|..+... ...
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-------------~~~~~~~d~~~~~~~~~~  275 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-------------NVRVLEANAFDLLRRLEK  275 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-------------TEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CceEEECCHHHHHHHHHh
Confidence            6789999999999999999988668999999 66999999999999853             47888765543211 011


Q ss_pred             cCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          142 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                      ...+||+|++.++.+..         .....++..+.++|+|||.++++......
T Consensus       276 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  330 (382)
T 1wxx_A          276 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM  330 (382)
T ss_dssp             TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             cCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            25689999998776543         33566888899999999999988765443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.46  E-value=5.8e-13  Score=106.15  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|+..++..            .++.+...|..+..  +
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~--~  119 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE------------SRIELLFGDALQLG--E  119 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCGGGSH--H
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECCHHHHH--H
Confidence            5679999999999999999987  578999999 67999999999987642            46888876654321  2


Q ss_pred             cc--CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          141 AV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       141 ~~--~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ..  +++||+|++..+.   +....+++.+.++|+|||.+++.
T Consensus       120 ~~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          120 KLELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HHTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hcccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEE
Confidence            12  4689999987663   46788999999999999999885

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.46  E-value=5e-13  Score=106.17  Aligned_cols=128  Identities=11%  Similarity=0.089  Sum_probs=91.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      +.+|||||||+|..++.+++.   +++|+++|. +++++.+++|++.++..           ..++++...|..+.  .+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----------~~~i~~~~gda~~~--l~  123 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS-----------PSRVRFLLSRPLDV--MS  123 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-----------GGGEEEECSCHHHH--GG
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----------cCcEEEEEcCHHHH--HH
Confidence            449999999999999999975   578999999 66999999999987742           14788887554322  11


Q ss_pred             cc-CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc----------Chh--HHHHHHHHHhc--CCeEEE
Q 027530          141 AV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR----------STS--VHEQMLQMWKS--NFNVKL  205 (222)
Q Consensus       141 ~~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r----------~~~--~~~~f~~~~~~--~~~v~~  205 (222)
                      .. +++||+|++...   ......+++.+.++|+|||.+++.....          ...  ....|.+.+..  ++....
T Consensus       124 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  200 (221)
T 3dr5_A          124 RLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVAR  200 (221)
T ss_dssp             GSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             HhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEE
Confidence            22 578999997543   4566779999999999999988743211          111  23567776643  455555


Q ss_pred             ecC
Q 027530          206 VPK  208 (222)
Q Consensus       206 v~~  208 (222)
                      +|-
T Consensus       201 lp~  203 (221)
T 3dr5_A          201 LPL  203 (221)
T ss_dssp             ESS
T ss_pred             eec
Confidence            553

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.46  E-value=8.4e-13  Score=112.36  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=85.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..++.+++..  .+++++|++++++.+++++..+++            ..++++...|+.+.  . 
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~--~-  245 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL------------ADRVTVAEGDFFKP--L-  245 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC------------TTTEEEEECCTTSC--C-
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC------------CCceEEEeCCCCCc--C-
Confidence            356899999999999999999874  589999996699999999987764            24789998776532  1 


Q ss_pred             ccCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        ...||+|+++.++++....  ..+++.+.++|+|||.+++...
T Consensus       246 --~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 --PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             --SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence              2349999999999876554  4799999999999999988765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.46  E-value=9.2e-13  Score=107.83  Aligned_cols=124  Identities=13%  Similarity=0.010  Sum_probs=91.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+++.            .++++...|+.+. 
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~-  176 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI------------ERVTIKVRDISEG-  176 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG------------GGEEEECCCGGGC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC------------CCEEEEECCHHHc-
Confidence            446789999999999999999987   468999999 67999999999887642            4678887666533 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEecC
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  208 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~~  208 (222)
                         ...++||+|+++.     .....+++.+.++|+|||.+++......  ....+.+.++ .+|....+..
T Consensus       177 ---~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          177 ---FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             ---CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEEC
T ss_pred             ---ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEEE
Confidence               2346899999853     3445789999999999999988775432  2344455543 5776554443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.46  E-value=1.8e-12  Score=112.85  Aligned_cols=138  Identities=12%  Similarity=0.101  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +..+.+++.+..       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.|++          
T Consensus       271 ~e~l~~~~~~~l-------~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~----------  333 (433)
T 1uwv_A          271 NQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL----------  333 (433)
T ss_dssp             HHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHhh-------cCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence            455666665542       2345679999999999999999999889999999 6699999999998874          


Q ss_pred             CCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHH-Hh
Q 027530          121 NLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM-WK  198 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~-~~  198 (222)
                         .++++...|+.+... .+...++||+|+++++....   ..+++.+.+ ++|++.+|++..+..   +..-... .+
T Consensus       334 ---~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~t---lard~~~l~~  403 (433)
T 1uwv_A          334 ---QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPAT---LARDSEALLK  403 (433)
T ss_dssp             ---CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHHH---HHHHHHHHHH
T ss_pred             ---CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChHH---HHhhHHHHHH
Confidence               378999988876322 22335689999987775322   256666654 689999999775432   2222233 34


Q ss_pred             cCCeEEEe
Q 027530          199 SNFNVKLV  206 (222)
Q Consensus       199 ~~~~v~~v  206 (222)
                      .+|.+..+
T Consensus       404 ~Gy~~~~~  411 (433)
T 1uwv_A          404 AGYTIARL  411 (433)
T ss_dssp             TTCEEEEE
T ss_pred             CCcEEEEE
Confidence            68888664

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.46  E-value=1.7e-13  Score=117.17  Aligned_cols=146  Identities=13%  Similarity=0.090  Sum_probs=99.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHH-------hhccccccCCCCCCCCCceEEEEe
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEW-------NTSRISQMNPGSGNLLGSIQAVEL  131 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~-------n~~~~~~~~~~~~~~~~~v~~~~~  131 (222)
                      ..++.+|||||||+|.+.+.+|.. ++ +|+|+|+ +++++.+++|++.       +++.           ..++++.+.
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-----------~~rVefi~G  239 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-----------HAEYTLERG  239 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-----------CCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-----------CCCeEEEEC
Confidence            447789999999999999988864 66 4999999 5699999887642       3321           247899986


Q ss_pred             ecCCCccccccC--CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHH--HHHHHHHhcCCeEEEec
Q 027530          132 DWGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVH--EQMLQMWKSNFNVKLVP  207 (222)
Q Consensus       132 d~~~~~~~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~--~~f~~~~~~~~~v~~v~  207 (222)
                      |..+.   +...  ..||+|+++.+++ .......+..+.+.|+|||++++..........  ..-+.-+...+.++...
T Consensus       240 D~~~l---p~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~el~  315 (438)
T 3uwp_A          240 DFLSE---EWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELS  315 (438)
T ss_dssp             CTTSH---HHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEEECC
T ss_pred             cccCC---ccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheeeecc
Confidence            66543   2211  4799999987765 455666777888999999999876544333210  01111123456777777


Q ss_pred             CCCCCcccCCCCCCC
Q 027530          208 KAKESTMWGNPLGLY  222 (222)
Q Consensus       208 ~~~~~~~~~~~~~~~  222 (222)
                      .....-.|....|.|
T Consensus       316 ~~~~sVSWT~~~g~y  330 (438)
T 3uwp_A          316 PLKGSVSWTGKPVSY  330 (438)
T ss_dssp             CCTTCCCTTSSCCCC
T ss_pred             CCCCceeeccCCccE
Confidence            666666777777766

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.46  E-value=5.1e-13  Score=106.13  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++..++               ++++...|..+.   .
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------------~v~~~~~d~~~~---~  129 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---------------NIKLILGDGTLG---Y  129 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---------------SEEEEESCGGGC---C
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---------------CeEEEECCcccc---c
Confidence            446789999999999999999999999999999 669999998876432               577777665431   1


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ...++||+|+++.++++..      ..+.++|+|||.+++.....
T Consensus       130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            1356899999998886543      46888999999999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.46  E-value=1.1e-12  Score=105.72  Aligned_cols=119  Identities=14%  Similarity=0.046  Sum_probs=90.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ +.             .++++...|+.+.
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-------------~~v~~~~~d~~~~  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-------------ENVRFHLGKLEEA  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-------------CCEEEEESCGGGC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-------------CCEEEEECchhhc
Confidence            457789999999999999999987   568999999 67999999999887 52             3678888666533


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v  203 (222)
                         +..+++||+|+++     ......+++.+.++|+|||.+++..+...  ....+.+.++ .+|..
T Consensus       161 ---~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          161 ---ELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRL  218 (258)
T ss_dssp             ---CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEE
T ss_pred             ---CCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCce
Confidence               2234689999985     23455789999999999999998776432  2345555554 46654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.45  E-value=2.1e-12  Score=103.41  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=88.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|...+++.            .++++...|+.+..   
T Consensus        89 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~~~~~~~d~~~~~---  153 (248)
T 2yvl_A           89 LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLG------------KNVKFFNVDFKDAE---  153 (248)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCC------------TTEEEECSCTTTSC---
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC------------CcEEEEEcChhhcc---
Confidence            346789999999999999999988889999998 66999999999877642            46788876665432   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~  201 (222)
                      ....+||+|+++..     ....+++.+.++|+|||.+++..+...  ....+.+.+++.|
T Consensus       154 ~~~~~~D~v~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~f  207 (248)
T 2yvl_A          154 VPEGIFHAAFVDVR-----EPWHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENYF  207 (248)
T ss_dssp             CCTTCBSEEEECSS-----CGGGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTTE
T ss_pred             cCCCcccEEEECCc-----CHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhhC
Confidence            12468999998533     456789999999999999998876432  2344555544333

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.45  E-value=2.1e-13  Score=107.67  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++..                    .+...|..+.. .+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~--------------------~~~~~d~~~~~-~~~   89 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD--------------------HVVLGDIETMD-MPY   89 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS--------------------EEEESCTTTCC-CCS
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC--------------------cEEEcchhhcC-CCC
Confidence            46789999999999999999988889999999 568887765431                    34554544321 223


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+++||+|+++.++++......+++.+.++|+|||.+++..+.
T Consensus        90 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           90 EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            3578999999999999888899999999999999999998764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.45  E-value=4.8e-13  Score=111.79  Aligned_cols=101  Identities=24%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE---EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++.+.+   |+++|. +++++.+++|++.++.             .++++...|..+..
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-------------~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-------------ENVIFVCGDGYYGV  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEESCGGGCC
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCeEEEECChhhcc
Confidence            446789999999999999999987654   999999 6799999999988774             25888886665321


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         ...++||+|++..++.+..      +.+.+.|+|||++++....
T Consensus       140 ---~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 ---PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             ---GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             ---ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence               1346899999998886543      5778899999999987543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.45  E-value=2.2e-13  Score=109.66  Aligned_cols=128  Identities=19%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||||||+|..++.+++.   +++|+++|+ +++++.+++|++.+++.            .++++...|..+.  .
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~--l  125 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE------------HKIKLRLGPALDT--L  125 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT------------TTEEEEESCHHHH--H
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHH--H
Confidence            5679999999999999999974   568999999 66999999999988742            5788888554322  1


Q ss_pred             ccc-----CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--C
Q 027530          140 KAV-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--N  200 (222)
Q Consensus       140 ~~~-----~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~  200 (222)
                      +..     .++||+|++...   ......+++.+.++|+|||.+++.......            .....|.+.+..  .
T Consensus       126 ~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~  202 (242)
T 3r3h_A          126 HSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSR  202 (242)
T ss_dssp             HHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCS
T ss_pred             HHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCC
Confidence            111     478999997644   456778899999999999998885433211            125667777753  4


Q ss_pred             CeEEEecC
Q 027530          201 FNVKLVPK  208 (222)
Q Consensus       201 ~~v~~v~~  208 (222)
                      |....+|-
T Consensus       203 ~~~~~lp~  210 (242)
T 3r3h_A          203 VFVSLLAI  210 (242)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEEc
Confidence            65555543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.45  E-value=3.1e-13  Score=107.55  Aligned_cols=97  Identities=8%  Similarity=0.066  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++..                  ++.+...|..+.   +.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~------------------~~~~~~~d~~~~---~~   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP------------------DATLHQGDMRDF---RL   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCT------------------TCEEEECCTTTC---CC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCC------------------CCEEEECCHHHc---cc
Confidence            35689999999999999999999889999999 669998887631                  467777666543   22


Q ss_pred             cCCCccEEEE-eccccCc---cCHHHHHHHHHHhcCCCeEEEEE
Q 027530          142 VAPPFDYIIG-TDVVYAE---HLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       142 ~~~~fD~Ii~-~d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       +++||+|++ .+++++.   .....+++.+.++|+|||.+++.
T Consensus        98 -~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           98 -GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             -SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             -CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence             568999995 4577665   45677999999999999999886

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=5e-13  Score=106.04  Aligned_cols=106  Identities=18%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++. |  .+|+++|. +++++.+++|++.+               .++++...|..+..
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---------------~~v~~~~~d~~~~~  135 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---------------RNIVPILGDATKPE  135 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---------------TTEEEEECCTTCGG
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---------------CCCEEEEccCCCcc
Confidence            346789999999999999999976 4  58999999 66999999888743               36788887766532


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ......++||+|++..+  .......+++.+.++|+|||.+++....
T Consensus       136 ~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  180 (227)
T 1g8a_A          136 EYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             GGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             hhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            21222458999997654  2333345599999999999999988544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.44  E-value=7.1e-13  Score=104.00  Aligned_cols=100  Identities=13%  Similarity=0.037  Sum_probs=79.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++..            .++++...|+.+.  .
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~--~  121 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI------------DRVELQVGDPLGI--A  121 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG------------GGEEEEESCHHHH--H
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC------------ceEEEEEecHHHH--h
Confidence            4579999999999999999976   678999999 66999999999887642            4688888665432  1


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +...+ ||+|++..   .......+++.+.++|+|||.+++.
T Consensus       122 ~~~~~-fD~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          122 AGQRD-IDILFMDC---DVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             TTCCS-EEEEEEET---TTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccCCC-CCEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            22245 99999863   2456788999999999999998874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.44  E-value=7.8e-13  Score=104.43  Aligned_cols=125  Identities=13%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      +.+|||+|||+|..+..+++.    +++|. +++++.++++    .                +.+...+..+   .+...
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~----------------~~~~~~d~~~---~~~~~  100 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G----------------VFVLKGTAEN---LPLKD  100 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T----------------CEEEECBTTB---CCSCT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C----------------CEEEEccccc---CCCCC
Confidence            789999999999999888766    99999 5688888775    1                3555555432   23345


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh---------------------HHHHHHHHHh-cCC
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS---------------------VHEQMLQMWK-SNF  201 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~---------------------~~~~f~~~~~-~~~  201 (222)
                      ++||+|+++.++++......+++.+.++|+|||.+++....+...                     ....+.+.++ .+|
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf  180 (219)
T 1vlm_A          101 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGF  180 (219)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTC
T ss_pred             CCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCC
Confidence            789999999999988889999999999999999999987654321                     1344555554 588


Q ss_pred             eEEEecCCCCCcccC
Q 027530          202 NVKLVPKAKESTMWG  216 (222)
Q Consensus       202 ~v~~v~~~~~~~~~~  216 (222)
                      ++..+......+.+.
T Consensus       181 ~~~~~~~~~~~~p~~  195 (219)
T 1vlm_A          181 EEFKVVQTLFKHPSE  195 (219)
T ss_dssp             EEEEEEEECCSCGGG
T ss_pred             eEEEEecccCCCCCc
Confidence            886666554444443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.44  E-value=6.8e-13  Score=110.39  Aligned_cols=115  Identities=15%  Similarity=0.031  Sum_probs=84.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc---
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH---  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---  138 (222)
                      ++.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++...+.....      .....++.+...|..+...   
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~  107 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD------SEYIFSAEFITADSSKELLIDK  107 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSC------C-CCCEEEEEECCTTTSCSTTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhccc------ccccceEEEEEecccccchhhh
Confidence            5679999999999999888865 458999999 5699999998876531000      0012367888877765431   


Q ss_pred             ccccCCCccEEEEeccccCc----cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .....++||+|+++.++++.    .....+++.+.++|+|||.++++...
T Consensus       108 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          108 FRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             CSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             cccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            11124589999999998765    33568999999999999999988764

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.43  E-value=2e-12  Score=108.41  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=85.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ...+|||+|||+|..+..+++.  +.+++++|++++++.+++++...++            ..++++...|..+.  .  
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~--~--  232 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL------------SGRAQVVVGSFFDP--L--  232 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC------------TTTEEEEECCTTSC--C--
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc------------CcCeEEecCCCCCC--C--
Confidence            3579999999999999999876  4479999997799999999887653            25799999776521  1  


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       +.+||+|++..++++...  ...+++.+.+.|+|||++++....
T Consensus       233 -p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          233 -PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             -CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             -CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence             227999999999987665  478999999999999999997653

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.43  E-value=3.6e-12  Score=99.48  Aligned_cols=124  Identities=23%  Similarity=0.283  Sum_probs=87.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..++.+++.|. +|+++|+ +++++.+++|+..++.              ++++...|+.+.   
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~~~~~d~~~~---  109 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--------------KFKVFIGDVSEF---  109 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--------------SEEEEESCGGGC---
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CEEEEECchHHc---
Confidence            44678999999999999999999876 6999999 6699999999987752              577777665432   


Q ss_pred             cccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecCC
Q 027530          140 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  209 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~~  209 (222)
                         +.+||+|+++++++..  .....+++.+.+++   |.+|+... ........+.+.+ +.+|+++.+...
T Consensus       110 ---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~  175 (207)
T 1wy7_A          110 ---NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLTT  175 (207)
T ss_dssp             ---CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ---CCCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEEE
Confidence               2489999999887654  34456788888877   44555442 1222233344444 347777665543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.43  E-value=1.2e-12  Score=111.31  Aligned_cols=107  Identities=12%  Similarity=0.168  Sum_probs=85.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ..++|||||||+|..++.+++.  +.+++++|.+++++.+++++...++            ..++++...|..+.. .+ 
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~~-~~-  244 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG------------SERIHGHGANLLDRD-VP-  244 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT------------GGGEEEEECCCCSSS-CC-
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc------------ccceEEEEccccccC-CC-
Confidence            4579999999999999999985  4589999998899999999876553            257899997765432 01 


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+++||+|++..++++...  ...+++.+.+.|+|||++++....
T Consensus       245 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          245 FPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             CCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            1368999999999986543  457899999999999999987753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.43  E-value=3.4e-12  Score=109.02  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=99.0

Q ss_pred             eEEEeEcCeEEEEeeCCCCc-cc---cccccc----hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH
Q 027530           13 VINLEVLGHQLQFSQDPNSK-HL---GTTVWD----ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL   84 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~-~~---g~~~W~----~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~   84 (222)
                      .+.+.+.+..+++..+..+. ..   |.+.+.    -...++..+...       . ..++.+|||+|||+|..++.++.
T Consensus       166 ~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~-------~-~~~~~~vLD~gCGsG~~~i~~a~  237 (373)
T 3tm4_A          166 IFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIEL-------A-ELDGGSVLDPMCGSGTILIELAL  237 (373)
T ss_dssp             EEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHH-------H-TCCSCCEEETTCTTCHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHh-------h-cCCCCEEEEccCcCcHHHHHHHH
Confidence            45677788888887765432 22   222221    134555555443       2 33678999999999999999999


Q ss_pred             hCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc---
Q 027530           85 LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---  158 (222)
Q Consensus        85 ~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~---  158 (222)
                      .+.  +|+++|+ +++++.+++|+..+++.            .++++.+.|..+   .+...++||+|++++++...   
T Consensus       238 ~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~------------~~i~~~~~D~~~---~~~~~~~fD~Ii~npPyg~r~~~  302 (373)
T 3tm4_A          238 RRYSGEIIGIEKYRKHLIGAEMNALAAGVL------------DKIKFIQGDATQ---LSQYVDSVDFAISNLPYGLKIGK  302 (373)
T ss_dssp             TTCCSCEEEEESCHHHHHHHHHHHHHTTCG------------GGCEEEECCGGG---GGGTCSCEEEEEEECCCC-----
T ss_pred             hCCCCeEEEEeCCHHHHHHHHHHHHHcCCC------------CceEEEECChhh---CCcccCCcCEEEECCCCCcccCc
Confidence            987  8999999 66999999999988753            478888866543   33345789999998885431   


Q ss_pred             -c----CHHHHHHHHHHhcCCCeEEEE
Q 027530          159 -H----LLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       159 -~----~~~~ll~~~~~~l~~~g~~~l  180 (222)
                       .    ....+++.++++| +++.+++
T Consensus       303 ~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          303 KSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             -CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence             1    1366788888888 4444444

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.43  E-value=1.1e-12  Score=110.83  Aligned_cols=105  Identities=12%  Similarity=0.061  Sum_probs=86.8

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +.+|||+|||+|..+..+++.  +.+++++|.+++++.+++++...+..            .++++...|+.+...  ..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~--~~  245 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG------------GRVEFFEKNLLDARN--FE  245 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG------------GGEEEEECCTTCGGG--GT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC------------CceEEEeCCcccCcc--cC
Confidence            689999999999999999987  45899999988999999998876642            578999977664321  13


Q ss_pred             CCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...||+|++..++++...  ...+++.+.+.|+|||++++...
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            456999999999987654  47899999999999999999875

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.43  E-value=9.7e-13  Score=110.87  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=81.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +|.+|||+|||+|..++. ++.+.+|+++|. +++++.+++|++.|++.            .++++...|..+..     
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~------------~~v~~~~~D~~~~~-----  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLE------------HKIIPILSDVREVD-----  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEESCGGGCC-----
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEECChHHhc-----
Confidence            678999999999999999 885568999999 67999999999999852            47888886655332     


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                       .+||+|+++++.+.    ..+++.+.++|+|||.+++......
T Consensus       257 -~~fD~Vi~dpP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          257 -VKGNRVIMNLPKFA----HKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             -CCEEEEEECCTTTG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             -CCCcEEEECCcHhH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence             78999999766443    3788889999999999888765554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.43  E-value=6.6e-13  Score=106.29  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=90.6

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      .++..|.+.+...       ....++++|||||||+|..+..+++.|+ +|+++|+ ++|++.++++.......      
T Consensus        20 rg~~kL~~~L~~~-------~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~------   86 (232)
T 3opn_A           20 RGGLKLEKALKEF-------HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM------   86 (232)
T ss_dssp             TTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE------
T ss_pred             CcHHHHHHHHHHc-------CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc------
Confidence            3466777777654       3456788999999999999999999986 8999999 56998876653321100      


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE-------------
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------  184 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~-------------  184 (222)
                            ....   ..+......  ....||.+.. |+++.  ....+++.+.++|+|||.+++...+             
T Consensus        87 ------~~~~---~~~~~~~~~--~~~~~d~~~~-D~v~~--~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G  152 (232)
T 3opn_A           87 ------EQFN---FRNAVLADF--EQGRPSFTSI-DVSFI--SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNG  152 (232)
T ss_dssp             ------CSCC---GGGCCGGGC--CSCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CC
T ss_pred             ------ccce---EEEeCHhHc--CcCCCCEEEE-EEEhh--hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCC
Confidence                  0000   001110111  1123565443 33332  2378999999999999999886321             


Q ss_pred             --cCh----hHHHHHHHHHh-cCCeEEEecCCCCCc
Q 027530          185 --RST----SVHEQMLQMWK-SNFNVKLVPKAKEST  213 (222)
Q Consensus       185 --r~~----~~~~~f~~~~~-~~~~v~~v~~~~~~~  213 (222)
                        |..    ...+++.+.++ .+|.+..+....+..
T Consensus       153 ~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g  188 (232)
T 3opn_A          153 IIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG  188 (232)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB
T ss_pred             eecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC
Confidence              011    12344555554 589988877665544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.43  E-value=1.1e-12  Score=105.81  Aligned_cols=104  Identities=14%  Similarity=0.037  Sum_probs=80.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      ++++|||||||+|..++.+++.   +.+|+++|. +++++.+++|++.+++.            .++++...|..+... 
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~l~~  146 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD------------HKIDFREGPALPVLDE  146 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCeEEEECCHHHHHHH
Confidence            5679999999999999999986   679999999 66999999999987642            478888865543211 


Q ss_pred             ccc---cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...   ..++||+|++...   ......+++.+.++|+|||.+++..
T Consensus       147 l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          147 MIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            100   1478999997633   4567889999999999999987754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.42  E-value=4.2e-12  Score=107.64  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++..++..            .++++...|..+.   +
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~---~  253 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA------------DRMRGIAVDIYKE---S  253 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCT------------TTEEEEECCTTTS---C
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCC------------CCEEEEeCccccC---C
Confidence            45679999999999999999987  45899999977999999999877642            4689998776543   1


Q ss_pred             ccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        .+.+|+|+++.++++...  ...+++.+.+.|+|||.+++...
T Consensus       254 --~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          254 --YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             --CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             --CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence              123499999999987655  78899999999999999988774

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.42  E-value=3.6e-12  Score=106.42  Aligned_cols=127  Identities=13%  Similarity=-0.001  Sum_probs=88.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+++|++++++             .++.+...|..+.  
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-------------~~v~~~~~D~~~~--  181 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-------------LNVILFHSSSLHI--  181 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-------------CSEEEESSCGGGG--
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-------------CeEEEEECChhhc--
Confidence            36789999999999999999875   358999999 5699999999998874             2678877555432  


Q ss_pred             ccccCCCccEEEEecccc------CccC----------------HHHHHHHHHHhcCCCeEEEEEEEEc----ChhHHHH
Q 027530          139 IKAVAPPFDYIIGTDVVY------AEHL----------------LEPLLQTIFALSGPKTTILLGYEIR----STSVHEQ  192 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y------~~~~----------------~~~ll~~~~~~l~~~g~~~l~~~~r----~~~~~~~  192 (222)
                       ....++||+|++..+..      ....                ...+++.+.++|+|||+++++.-.-    +......
T Consensus       182 -~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~  260 (315)
T 1ixk_A          182 -GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQW  260 (315)
T ss_dssp             -GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             -ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHH
Confidence             22356899999864421      1111                1478899999999999998865432    2223444


Q ss_pred             HHHHHhcCCeEEEec
Q 027530          193 MLQMWKSNFNVKLVP  207 (222)
Q Consensus       193 f~~~~~~~~~v~~v~  207 (222)
                      |++.  .+|+...++
T Consensus       261 ~l~~--~~~~~~~~~  273 (315)
T 1ixk_A          261 ALDN--FDVELLPLK  273 (315)
T ss_dssp             HHHH--SSEEEECCC
T ss_pred             HHhc--CCCEEecCC
Confidence            5443  356555443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.42  E-value=2.6e-13  Score=109.55  Aligned_cols=83  Identities=19%  Similarity=0.212  Sum_probs=63.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-c-c
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-D-H  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-~  138 (222)
                      ++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..+++.            .++++...|..+. . .
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~~~~~  132 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS------------DLIKVVKVPQKTLLMDA  132 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTCSSTTT
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC------------ccEEEEEcchhhhhhhh
Confidence            5679999999999999888875  679999999 66999999999988742            3588888775441 1 1


Q ss_pred             cccc-CCCccEEEEeccccCc
Q 027530          139 IKAV-APPFDYIIGTDVVYAE  158 (222)
Q Consensus       139 ~~~~-~~~fD~Ii~~d~~y~~  158 (222)
                      .... +.+||+|+++++++..
T Consensus       133 ~~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A          133 LKEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             STTCCSCCBSEEEECCCCC--
T ss_pred             hhcccCCcccEEEECCCCccC
Confidence            1111 2589999999887653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.42  E-value=1e-12  Score=104.91  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..++.+++.+ .+|+++|. +++++.+++|+..++.             .++++...|..  ...
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~v~~~~~d~~--~~~  153 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-------------KNVHVILGDGS--KGF  153 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEESCGG--GCC
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CCcEEEECCcc--cCC
Confidence            4467899999999999999999886 78999998 6799999999987764             25777776652  111


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      + ...+||+|+++.++.+.      .+.+.+.|+|||++++.....
T Consensus       154 ~-~~~~fD~Ii~~~~~~~~------~~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          154 P-PKAPYDVIIVTAGAPKI------PEPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             G-GGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEECSS
T ss_pred             C-CCCCccEEEECCcHHHH------HHHHHHhcCCCcEEEEEEecC
Confidence            1 23469999998877543      246788999999999987654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.42  E-value=1.2e-12  Score=104.87  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++++..++..            .++++...|..+... 
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~------------~~v~~~~~d~~~~~~~  127 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE------------NKIFLKLGSALETLQV  127 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CCEEEEECCHHHHHHH
Confidence            5679999999999999999987   568999999 67999999999887642            357887755432111 


Q ss_pred             cc-----------cc-C-CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHH
Q 027530          139 IK-----------AV-A-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQM  193 (222)
Q Consensus       139 ~~-----------~~-~-~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f  193 (222)
                      ..           +. . ++||+|++...   ......+++.+.++|+|||.+++.......            .....|
T Consensus       128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  204 (239)
T 2hnk_A          128 LIDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKF  204 (239)
T ss_dssp             HHHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHH
T ss_pred             HHhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHH
Confidence            00           01 2 68999998733   456678999999999999999886522111            124556


Q ss_pred             HHHHhc--CCeEEEecC
Q 027530          194 LQMWKS--NFNVKLVPK  208 (222)
Q Consensus       194 ~~~~~~--~~~v~~v~~  208 (222)
                      .+.+..  .+.+..+|-
T Consensus       205 ~~~~~~~~~~~~~~~p~  221 (239)
T 2hnk_A          205 NELVYNDSLVDVSLVPI  221 (239)
T ss_dssp             HHHHHHCTTEEEEEECS
T ss_pred             HHHHhhCCCeEEEEEEc
Confidence            666543  466665654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.42  E-value=3.1e-12  Score=102.20  Aligned_cols=107  Identities=16%  Similarity=0.057  Sum_probs=73.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+|||+|||+|..+..++.. +  .+|+++|. +.+++.+.+.++..               .++.+...|.....
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---------------~nv~~i~~Da~~~~  138 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---------------PNIFPLLADARFPQ  138 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---------------TTEEEEECCTTCGG
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---------------CCeEEEEcccccch
Confidence            457899999999999999988875 3  48999999 55776655544322               26777776655432


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ......++||+|+++-..  ......+...+.++|+|||+++++.+.+
T Consensus       139 ~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~~  184 (232)
T 3id6_C          139 SYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKAR  184 (232)
T ss_dssp             GTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             hhhccccceEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEccC
Confidence            222234689999987443  2333345566677999999999886443

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=3.3e-12  Score=107.13  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=84.4

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+|||+|||+|..+..+++.  +.+++++|++++++.+++++..+++.            .++++...|+.+.     .+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~------------~~v~~~~~d~~~~-----~~  231 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAG------------ERVSLVGGDMLQE-----VP  231 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHT------------TSEEEEESCTTTC-----CC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCC------------CcEEEecCCCCCC-----CC
Confidence            79999999999999999987  45899999966999999998877642            4789998776542     13


Q ss_pred             CCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+||+|++..++++....  ..+++.+.+.|+|||++++....
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            579999999999765443  48999999999999999998643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.41  E-value=3.7e-12  Score=96.14  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecchhhHHHHHHHHHHhhccccccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      +...+.+++...       ....++.+|||+|||+|..+..+++. +  .+|+++|.+++++.                 
T Consensus         6 ~~~~l~~~~~~~-------~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~-----------------   61 (180)
T 1ej0_A            6 AWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-----------------   61 (180)
T ss_dssp             HHHHHHHHHHHH-------CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------------
T ss_pred             HHHHHHHHHHHh-------CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------------
Confidence            344455555443       23446789999999999999999887 3  68999998545421                 


Q ss_pred             CCCCCCCceEEEEeecCCCcc---cc--ccCCCccEEEEeccccCccCH-----------HHHHHHHHHhcCCCeEEEEE
Q 027530          118 GSGNLLGSIQAVELDWGNEDH---IK--AVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~---~~--~~~~~fD~Ii~~d~~y~~~~~-----------~~ll~~~~~~l~~~g~~~l~  181 (222)
                            .++++...|+.+...   ..  ..+++||+|+++.++++....           ..+++.+.++|+|||.+++.
T Consensus        62 ------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~  135 (180)
T 1ej0_A           62 ------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             ------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  256777766654320   00  235789999999888765544           68899999999999999987


Q ss_pred             EEEcChhHHHHHHHHHhcCCeE
Q 027530          182 YEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       182 ~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      ......  ...+.+.+...|..
T Consensus       136 ~~~~~~--~~~~~~~~~~~~~~  155 (180)
T 1ej0_A          136 VFQGEG--FDEYLREIRSLFTK  155 (180)
T ss_dssp             EESSTT--HHHHHHHHHHHEEE
T ss_pred             EecCCc--HHHHHHHHHHhhhh
Confidence            765433  24455555444544

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.41  E-value=7.5e-13  Score=105.00  Aligned_cols=130  Identities=13%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-c
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-H  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~  138 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++..            .++++...|..+.. .
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~------------~~i~~~~~d~~~~~~~  136 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE------------HKIDLRLKPALETLDE  136 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC------------CeEEEEEcCHHHHHHH
Confidence            5689999999999999999976   568999999 66999999999987642            47888875543221 1


Q ss_pred             ccccC--CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCe
Q 027530          139 IKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~  202 (222)
                      .....  ++||+|++...   ......+++.+.++|+|||.+++.......            .....|.+.+..  .+.
T Consensus       137 ~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  213 (229)
T 2avd_A          137 LLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVY  213 (229)
T ss_dssp             HHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEE
T ss_pred             HHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEE
Confidence            11111  68999998654   455678999999999999998885433221            123566666643  466


Q ss_pred             EEEecC
Q 027530          203 VKLVPK  208 (222)
Q Consensus       203 v~~v~~  208 (222)
                      ...+|.
T Consensus       214 ~~~lp~  219 (229)
T 2avd_A          214 ISLLPL  219 (229)
T ss_dssp             EEEECS
T ss_pred             EEEEec
Confidence            665553

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.41  E-value=1.7e-11  Score=106.27  Aligned_cols=99  Identities=20%  Similarity=0.249  Sum_probs=79.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.|++             . +++...|+.+..     
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl-------------~-v~~~~~d~~~~~-----  350 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-------------D-AEFEVASDREVS-----  350 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-------------C-EEEEECCTTTCC-----
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-------------c-EEEEECChHHcC-----
Confidence            5679999999999999999999889999999 6699999999998873             2 788887765432     


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+||+|+++++.  ......+++.+.. ++|+|.+|++..+
T Consensus       351 ~~~fD~Vv~dPPr--~g~~~~~~~~l~~-l~p~givyvsc~p  389 (425)
T 2jjq_A          351 VKGFDTVIVDPPR--AGLHPRLVKRLNR-EKPGVIVYVSCNP  389 (425)
T ss_dssp             CTTCSEEEECCCT--TCSCHHHHHHHHH-HCCSEEEEEESCH
T ss_pred             ccCCCEEEEcCCc--cchHHHHHHHHHh-cCCCcEEEEECCh
Confidence            1289999998774  2334557777754 8999999998743

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.41  E-value=2e-13  Score=122.71  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||.|+++..+|++|++|||+|. +++++.|+..+..++.             .++++...+..+... ...
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-------------~~~~~~~~~~~~~~~-~~~  131 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-------------FAAEFRVGRIEEVIA-ALE  131 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-------------SEEEEEECCHHHHHH-HCC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-------------CceEEEECCHHHHhh-hcc
Confidence            5579999999999999999999999999999 5699999999887652             267887755432211 223


Q ss_pred             CCCccEEEEeccccCccCHHHHH--HHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLL--QTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll--~~~~~~l~~~g~~~l~~  182 (222)
                      +++||+|+++++++|..+...+.  ..+.+.+++++..++..
T Consensus       132 ~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          132 EGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             TTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            57899999999999866544332  23344466666666544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=6.1e-12  Score=107.38  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=83.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++++|||+| |+|..++.+++.+.  +|+++|+ +++++.+++|++.+++             .++++...|+.+.  
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-------------~~v~~~~~D~~~~--  233 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-------------EDIEIFTFDLRKP--  233 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-------------CCEEEECCCTTSC--
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCEEEEEChhhhh--
Confidence            34688999999 99999999998875  7999999 6799999999998874             2688888777652  


Q ss_pred             ccc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE-EEEEEEE
Q 027530          139 IKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT-ILLGYEI  184 (222)
Q Consensus       139 ~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~-~~l~~~~  184 (222)
                      ++. .+++||+|++++++... ....+++.+.++|+|||+ ++++...
T Consensus       234 l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          234 LPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             chhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            221 24589999998775433 357889999999999994 4665544

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.40  E-value=2.2e-12  Score=103.34  Aligned_cols=114  Identities=7%  Similarity=-0.051  Sum_probs=78.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||||||+|..++.+|+.  +..|+++|+ +.+++.+++++.......    .   ....++.+...|..+.....
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~----~---~~~~nv~~~~~d~~~~l~~~  118 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP----A---GGFQNIACLRSNAMKHLPNF  118 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST----T---CCCTTEEEEECCTTTCHHHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH----h---cCCCeEEEEECcHHHhhhhh
Confidence            4568999999999999999987  457999999 569999999876421100    0   01247899887765421111


Q ss_pred             ccCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+++||.|+.+-+--+..        ....+++.+.++|+|||.+++....
T Consensus       119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            3467899998653221110        1257999999999999999987643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.40  E-value=3.9e-12  Score=103.91  Aligned_cols=117  Identities=16%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-hccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ +.           ...++++...|..+
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-----------~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-----------PPDNWRLVVSDLAD  164 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-----------CCTTEEEECSCGGG
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-----------CCCcEEEEECchHh
Confidence            3456789999999999999999985   568999999 67999999999876 30           02467888766543


Q ss_pred             CccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          136 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      .   ...+++||+|+++.     .....+++.+.++|+|||.+++..+...  ....+.+.+.
T Consensus       165 ~---~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~  217 (280)
T 1i9g_A          165 S---ELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALR  217 (280)
T ss_dssp             C---CCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             c---CCCCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            2   22356899999843     2455789999999999999988776432  2344444443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=1.7e-12  Score=112.41  Aligned_cols=109  Identities=18%  Similarity=0.288  Sum_probs=79.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHH-------HHHHHHhhccccccCCCCCCCCCceEEEEe
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLL-------KRNVEWNTSRISQMNPGSGNLLGSIQAVEL  131 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~  131 (222)
                      ..++.+|||||||+|..++.+|+. ++ +|+++|+ +++++.|       ++|+...++.           ..++++...
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-----------~~nV~~i~g  308 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-----------LNNVEFSLK  308 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-----------CCCEEEEES
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-----------CCceEEEEc
Confidence            447789999999999999999985 54 7999998 5688888       7887766531           146777764


Q ss_pred             e-cCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          132 D-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       132 d-~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      + +...........+||+|+++.+++ .......++.+.+.|+|||++++..
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CccccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEee
Confidence            2 221101111236899999887774 4566778899999999999998864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.39  E-value=2.8e-13  Score=117.09  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC--CCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG--NEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~  139 (222)
                      .++.+|||+|||+|..+..+++.|.+|+++|. +++++.++++    +..                .....+.  +....
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~----------------~~~~~~~~~~~~~l  165 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIR----------------VRTDFFEKATADDV  165 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCC----------------EECSCCSHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCC----------------cceeeechhhHhhc
Confidence            46789999999999999999999999999999 5688888765    211                1110000  01112


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +..+++||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus       166 ~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          166 RRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            233579999999999999999999999999999999999997653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.39  E-value=3e-12  Score=117.31  Aligned_cols=111  Identities=11%  Similarity=0.035  Sum_probs=85.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++.+|||||||+|..++.+++.+   .+|+++|+ ++|++.|++++.......       .....++++.+.|..+   .
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk-------r~gl~nVefiqGDa~d---L  790 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE-------ACNVKSATLYDGSILE---F  790 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT-------CSSCSEEEEEESCTTS---C
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh-------hcCCCceEEEECchHh---C
Confidence            67899999999999999999998   68999999 569999998776532100       0012478888866654   3


Q ss_pred             cccCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +...++||+|++..++++....  ..+++.+.++|+|| .++++.+.+
T Consensus       791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            3446789999999999886653  35899999999999 777776543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=3.8e-12  Score=102.44  Aligned_cols=115  Identities=7%  Similarity=-0.027  Sum_probs=80.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..++.+++.++  +|+++|+ +.+++.+++|++.+.......     ....++.+...|..+.....
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-----~~~~nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASK-----HGFQNINVLRGNAMKFLPNF  123 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CC-----STTTTEEEEECCTTSCGGGT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccc-----cCCCcEEEEeccHHHHHHHh
Confidence            567899999999999999998864  7999999 569999999998773210000     00247888887765432211


Q ss_pred             ccCCCccEEEEecc--ccCcc------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDV--VYAEH------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~--~y~~~------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .....+|.|+...+  .+...      ....+++.+.++|+|||.+++...
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            34578999886522  11000      115799999999999999988654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.38  E-value=4.1e-12  Score=107.58  Aligned_cols=105  Identities=15%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++.+|||+|||+|..+..+++.+  .+++++|++++++.+++|+..+++            ..++++...|+.+.  . 
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~------------~~~v~~~~~d~~~~--~-  246 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL------------SDRVDVVEGDFFEP--L-  246 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC------------TTTEEEEECCTTSC--C-
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC------------CCceEEEeCCCCCC--C-
Confidence            356799999999999999999875  479999996799999999987764            24789999777542  1 


Q ss_pred             ccCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                        ...||+|+++.++++....  ..+++.+.++|+|||.+++....
T Consensus       247 --~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 --PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             --SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             --CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence              2359999999999775544  57999999999999999988654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.38  E-value=7.8e-12  Score=106.58  Aligned_cols=138  Identities=11%  Similarity=0.036  Sum_probs=86.1

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +..+.+++.+..        ...+.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|++.|++          
T Consensus       199 ~~~l~~~~~~~~--------~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~----------  260 (369)
T 3bt7_A          199 NIQMLEWALDVT--------KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI----------  260 (369)
T ss_dssp             HHHHHHHHHHHT--------TTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHHHHh--------hcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            356666666542        223678999999999999999998789999999 6799999999999874          


Q ss_pred             CCCCceEEEEeecCCCcccccc-------------CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh
Q 027530          121 NLLGSIQAVELDWGNEDHIKAV-------------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  187 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~-------------~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~  187 (222)
                         .++++...|..+.......             ..+||+|+..++..  .....+++.+.   +++..+|++..+   
T Consensus       261 ---~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~--g~~~~~~~~l~---~~g~ivyvsc~p---  329 (369)
T 3bt7_A          261 ---DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS--GLDSETEKMVQ---AYPRILYISCNP---  329 (369)
T ss_dssp             ---CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT--CCCHHHHHHHT---TSSEEEEEESCH---
T ss_pred             ---CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc--ccHHHHHHHHh---CCCEEEEEECCH---
Confidence               3678887655332110000             13799999877653  23333443332   344444555432   


Q ss_pred             hHHHHHHHHHhcCCeEEEecC
Q 027530          188 SVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       188 ~~~~~f~~~~~~~~~v~~v~~  208 (222)
                      .+...=+..+..+|.++.+..
T Consensus       330 ~t~ard~~~l~~~y~~~~~~~  350 (369)
T 3bt7_A          330 ETLCKNLETLSQTHKVERLAL  350 (369)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHhhCcEEEEEEe
Confidence            222222222333576655543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.38  E-value=2.1e-12  Score=102.35  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-------EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ..++.+|||+|||+|..++.+++...       +|+++|. +++++.+++|+..++...        ....++++...|.
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------~~~~~v~~~~~d~  149 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL--------LKIDNFKIIHKNI  149 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG--------GSSTTEEEEECCG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc--------cccCCEEEEECCh
Confidence            34678999999999999999998754       8999999 669999999998775210        0024688888665


Q ss_pred             CCCcc-ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          134 GNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       134 ~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+... ......+||+|++..++.+      +++.+.++|+|||++++....
T Consensus       150 ~~~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          150 YQVNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GGCCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             HhcccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence            43210 0023468999999887743      457888999999999998765

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.38  E-value=5.1e-12  Score=103.42  Aligned_cols=108  Identities=12%  Similarity=0.042  Sum_probs=80.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.++..  + .+|+++|+ +++++.+++|++.++.             .++++...|..+...
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-------------~~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-------------LNTIIINADMRKYKD  148 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEESCHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-------------CcEEEEeCChHhcch
Confidence            36789999999999999988874  4 68999999 5699999999998874             267887755432211


Q ss_pred             c-cccCCCccEEEEeccccCc------------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 I-KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~-~~~~~~fD~Ii~~d~~y~~------------------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      . ....++||+|++..+....                  .....+++.+.++|+|||.++++.-
T Consensus       149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            0 0025689999987554221                  3457789999999999999988764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=8.9e-12  Score=96.86  Aligned_cols=96  Identities=22%  Similarity=0.243  Sum_probs=70.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+.                  ++++...|..+.   
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------------------~~~~~~~d~~~~---  107 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------------------GVNFMVADVSEI---  107 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------------------TSEEEECCGGGC---
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------------------CCEEEECcHHHC---
Confidence            34678999999999999999998876 6999999 669999998765                  346676554432   


Q ss_pred             cccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         +++||+|++++++++...  ...+++.+.+.+   |.++++...
T Consensus       108 ---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~  148 (200)
T 1ne2_A          108 ---SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA  148 (200)
T ss_dssp             ---CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred             ---CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence               268999999998876543  345778887777   556666644

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.37  E-value=6.5e-12  Score=103.40  Aligned_cols=145  Identities=14%  Similarity=0.084  Sum_probs=92.9

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      .++..|.+.+...       ....+|++|||+|||||.++..+++.|+ +|+++|+ ++|++.+.++-.           
T Consensus        68 rg~~Kl~~~l~~~-------~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-----------  129 (291)
T 3hp7_A           68 RGGLKLEKALAVF-------NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-----------  129 (291)
T ss_dssp             TTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-----------
T ss_pred             chHHHHHHHHHhc-------CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------
Confidence            4566777777654       3456789999999999999999999886 7999999 568887543211           


Q ss_pred             CCCCCCCceEEE-EeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE------------
Q 027530          118 GSGNLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI------------  184 (222)
Q Consensus       118 ~~~~~~~~v~~~-~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~------------  184 (222)
                             ++... ..+.............||+|++.-.+ +  .+..++..+.++|+|||.+++..++            
T Consensus       130 -------rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf-~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~  199 (291)
T 3hp7_A          130 -------RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSF-I--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKN  199 (291)
T ss_dssp             -------TEEEECSCCGGGCCGGGCTTCCCSEEEECCSS-S--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-C
T ss_pred             -------ccceecccCceecchhhCCCCCCCEEEEEeeH-h--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCC
Confidence                   22111 11111101001123459999875443 2  4588999999999999999887321            


Q ss_pred             ---cChh----HHHHHHHHH-hcCCeEEEecCCCCC
Q 027530          185 ---RSTS----VHEQMLQMW-KSNFNVKLVPKAKES  212 (222)
Q Consensus       185 ---r~~~----~~~~f~~~~-~~~~~v~~v~~~~~~  212 (222)
                         |.+.    ...++.+.+ ..+|.+..+....+.
T Consensus       200 G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~  235 (291)
T 3hp7_A          200 GIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ  235 (291)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred             CccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence               1111    234445554 458988877776653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.37  E-value=3e-12  Score=102.59  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=80.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++..            .++++...|+.+... 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~gda~~~l~~  137 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE------------HKINFIESDAMLALDN  137 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence            5679999999999999999976   678999999 67999999999987742            468888866543211 


Q ss_pred             ccc---cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~---~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...   ..++||+|+...   .......+++.+.++|+|||.+++..
T Consensus       138 l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          138 LLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEEEec
Confidence            100   146899999753   24567889999999999999987754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.37  E-value=3.4e-12  Score=104.53  Aligned_cols=106  Identities=10%  Similarity=0.029  Sum_probs=83.4

Q ss_pred             CCeEEEeCCCc---cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           65 GKRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        65 ~~~vLelGcG~---G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|||||||+   |.....+++.  +++|+++|. +.|++.+++++..+               .++++...|..+...
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---------------~~v~~~~~D~~~~~~  142 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---------------PNTAVFTADVRDPEY  142 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---------------TTEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---------------CCeEEEEeeCCCchh
Confidence            36899999999   9887766664  568999999 67999999887422               368888877765321


Q ss_pred             c--------cccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 I--------KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~--------~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .        .....+||+|+++.++++...  ...+++.+.++|+|||.+++.....
T Consensus       143 ~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          143 ILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            1        111248999999999988655  8889999999999999999988765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.37  E-value=4.9e-13  Score=105.37  Aligned_cols=107  Identities=11%  Similarity=0.084  Sum_probs=73.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+ ++|++.+.++++.+...         ....++.+...|..+.   +
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~---------~~~~~v~~~~~d~~~l---~   94 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK---------GGLPNLLYLWATAERL---P   94 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG---------TCCTTEEEEECCSTTC---C
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh---------cCCCceEEEecchhhC---C
Confidence            5679999999999999999998  568999999 56888765554432211         1124788888776553   2


Q ss_pred             ccCCCccEEEEecc---cc--CccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGTDV---VY--AEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~---~y--~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..... |.|...-+   .+  +......+++.+.++|||||.+++...
T Consensus        95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            23344 66662211   10  222337899999999999999999753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=3.3e-12  Score=102.41  Aligned_cols=98  Identities=13%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ++.+|||||||+|..++.+++.      +++|+++|+ +++++.++      +.            ..++++...|+.+.
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~------------~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD------------MENITLHQGDCSDL  142 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG------------CTTEEEEECCSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc------------CCceEEEECcchhH
Confidence            4579999999999999999986      678999999 56887776      11            14788888777653


Q ss_pred             ccccccC-CCccEEEEeccccCccCHHHHHHHHHH-hcCCCeEEEEEE
Q 027530          137 DHIKAVA-PPFDYIIGTDVVYAEHLLEPLLQTIFA-LSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~-~~fD~Ii~~d~~y~~~~~~~ll~~~~~-~l~~~g~~~l~~  182 (222)
                      ...+... .+||+|++... +  .....++..+.+ +|+|||++++..
T Consensus       143 ~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             HHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            1122223 37999987654 2  367788999997 999999998854

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.36  E-value=2.8e-12  Score=102.37  Aligned_cols=129  Identities=16%  Similarity=0.162  Sum_probs=91.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-cc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-DH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~  138 (222)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++..            .++++...++.+. ..
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~------------~~i~~~~~d~~~~l~~  139 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA------------EKISLRLGPALATLEQ  139 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC------------CcEEEEEcCHHHHHHH
Confidence            5679999999999999999976   568999999 66999999999887743            4688887554321 11


Q ss_pred             ccccC--CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCe
Q 027530          139 IKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~~~~~--~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~  202 (222)
                      ....+  ++||+|++...   ......+++.+.++|+|||.+++.......            .....|.+.+..  .+.
T Consensus       140 l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  216 (232)
T 3cbg_A          140 LTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVR  216 (232)
T ss_dssp             HHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEE
T ss_pred             HHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeE
Confidence            11112  68999997643   456778999999999999999885432221            124566666643  455


Q ss_pred             EEEec
Q 027530          203 VKLVP  207 (222)
Q Consensus       203 v~~v~  207 (222)
                      ...+|
T Consensus       217 ~~~lp  221 (232)
T 3cbg_A          217 ISVIP  221 (232)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.35  E-value=1.4e-11  Score=95.61  Aligned_cols=131  Identities=17%  Similarity=0.240  Sum_probs=87.1

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ++..|.+.+...       ....++.+|||||||+|..+..+++.+++|+++|++++.          .           
T Consensus         9 a~~KL~ei~~~~-------~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----------~-----------   60 (191)
T 3dou_A            9 AAFKLEFLLDRY-------RVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----------E-----------   60 (191)
T ss_dssp             HHHHHHHHHHHH-------CCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----------C-----------
T ss_pred             HHHHHHHHHHHc-------CCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----------c-----------
Confidence            345555555543       233467899999999999999999998899999985431          0           


Q ss_pred             CCCCceEEEEeecCCCcccc----ccC----CCccEEEEeccccCc-----------cCHHHHHHHHHHhcCCCeEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIK----AVA----PPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~----~~~----~~fD~Ii~~d~~y~~-----------~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                        ..++++.+.|..+.....    ...    ++||+|+++......           .....+++.+.++|+|||.+++.
T Consensus        61 --~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           61 --IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             --CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence              136788887776543111    011    489999986543211           11345777888999999999876


Q ss_pred             EEEcChhHHHHHHHHHhcCCeE
Q 027530          182 YEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       182 ~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      ......  ...+...++..|.-
T Consensus       139 ~~~~~~--~~~~~~~l~~~F~~  158 (191)
T 3dou_A          139 QFQGDM--TNDFIAIWRKNFSS  158 (191)
T ss_dssp             EECSTH--HHHHHHHHGGGEEE
T ss_pred             EcCCCC--HHHHHHHHHHhcCE
Confidence            543332  35677777766644

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.34  E-value=1.4e-12  Score=103.81  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=69.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHH--hCCEEEEecch-h-hHHHH---HHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-E-VLPLL---KRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~--~g~~v~~~D~~-~-~l~~~---~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ++.+|||||||+|..++.+++  .+++|+++|++ + |++.+   ++++..++.             .++.+...|..+.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-------------~~v~~~~~d~~~l   90 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-------------SNVVFVIAAAESL   90 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-------------SSEEEECCBTTBC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-------------CCeEEEEcCHHHh
Confidence            567999999999999999984  45689999985 6 66665   666665543             3688888776544


Q ss_pred             ccccccCCCccEEEEeccccC-----ccCHHHHHHHHHHhcCCCeEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~-----~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ..  .....+|.|.++.+...     ......+++.+.++|||||.+++
T Consensus        91 ~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           91 PF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             CG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             hh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            21  11234555554432211     01235689999999999999998

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.34  E-value=1.8e-11  Score=104.83  Aligned_cols=148  Identities=14%  Similarity=0.075  Sum_probs=104.1

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccccc-------hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~   85 (222)
                      .+.+.+.+..+++..+..+...-.+-|.       -...||..+...       ....++.+|||+|||+|.+.+.+|..
T Consensus       144 ~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~-------~~~~~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          144 PIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYL-------TPWKAGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             CEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHT-------SCCCTTSCEEETTCTTCHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHh-------hCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            5777788888888887643221111222       134566666554       23446789999999999999999876


Q ss_pred             C----------------------------------------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           86 G----------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        86 g----------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      +                                        .+|+++|+ +++++.|++|+..+++.            .
T Consensus       217 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~------------~  284 (385)
T 3ldu_A          217 GINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVD------------E  284 (385)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCG------------G
T ss_pred             HhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCC------------C
Confidence            4                                        35999999 66999999999999853            4


Q ss_pred             ceEEEEeecCCCccccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCC--CeEEEEEEE
Q 027530          125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTTILLGYE  183 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~--~g~~~l~~~  183 (222)
                      .+++.+.|+.+..    ...+||+||+++++..    ......+.+.+.+.|++  |+.+++...
T Consensus       285 ~i~~~~~D~~~l~----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          285 YIEFNVGDATQFK----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             GEEEEECCGGGCC----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             ceEEEECChhhcC----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence            7888886665432    2358999999998642    23345567767666665  888877665

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.33  E-value=7e-12  Score=105.92  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..+..+++...  +++++|.++++.  +++++..+.            ..++++...|..+  ..  
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~------------~~~v~~~~~d~~~--~~--  245 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDV------------AGRWKVVEGDFLR--EV--  245 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGG------------TTSEEEEECCTTT--CC--
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCC------------CCCeEEEecCCCC--CC--
Confidence            567999999999999999998654  689999976554  333322221            3578999877652  11  


Q ss_pred             cCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       + +||+|++..++++....  ..+++.+.++|+|||++++...
T Consensus       246 -p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          246 -P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             -C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred             -C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             2 89999999999887665  6899999999999999999775

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.33  E-value=6.7e-12  Score=105.08  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=87.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH--hhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++|||||||+|..+..+++.  +.+|+++|+ +++++.+++|+..  ++..           ..++++...|+.+.  
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~-----------~~~v~~~~~D~~~~--  182 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE-----------DKRVNVFIEDASKF--  182 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG-----------STTEEEEESCHHHH--
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-----------CCcEEEEEccHHHH--
Confidence            4579999999999999999987  458999999 6699999999865  2221           24788888665432  


Q ss_pred             ccccCCCccEEEEeccccC--ccC-H-HHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCC
Q 027530          139 IKAVAPPFDYIIGTDVVYA--EHL-L-EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  201 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~--~~~-~-~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~  201 (222)
                      .....++||+|+++..-..  ... . ..+++.+.++|+|||.+++.....  .......+.+.+++.|
T Consensus       183 l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F  251 (321)
T 2pt6_A          183 LENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLF  251 (321)
T ss_dssp             HHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTC
T ss_pred             HhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHC
Confidence            1123568999998642111  111 1 689999999999999998865432  2234556666666655

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.33  E-value=3.4e-11  Score=103.03  Aligned_cols=148  Identities=10%  Similarity=0.080  Sum_probs=104.8

Q ss_pred             eEEEeEcCeEEEEeeCCCCcccccccc-------chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVW-------DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W-------~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~   85 (222)
                      .+.+.+.+...++..+..+...-.+-|       |-...||..+...       ....++..+||.+||+|.+.+.+|..
T Consensus       143 ~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l-------~~~~~~~~llDp~CGSGt~lIEAa~~  215 (384)
T 3ldg_A          143 KIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILL-------SNWFPDKPFVDPTCGSGTFCIEAAMI  215 (384)
T ss_dssp             EEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHH-------TTCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHH-------hCCCCCCeEEEeCCcCCHHHHHHHHH
Confidence            577778888888887764332211222       1234666665544       23446789999999999999998876


Q ss_pred             CC----------------------------------------EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        86 g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      +.                                        +|+++|+ ++|++.+++|++.+++.            .
T Consensus       216 a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~------------~  283 (384)
T 3ldg_A          216 GMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLE------------D  283 (384)
T ss_dssp             HTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCT------------T
T ss_pred             hcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCC------------C
Confidence            43                                        4999999 66999999999998853            4


Q ss_pred             ceEEEEeecCCCccccccCCCccEEEEeccccC----ccCHHHHHHHHHHhcCC--CeEEEEEEE
Q 027530          125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTTILLGYE  183 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l~~--~g~~~l~~~  183 (222)
                      .+++.+.|..+..   . ..+||+|++++++..    ......+.+.+.+.+++  |+.+++...
T Consensus       284 ~I~~~~~D~~~l~---~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          284 VVKLKQMRLQDFK---T-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             TEEEEECCGGGCC---C-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             ceEEEECChHHCC---c-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence            6888886665432   1 358999999988643    13456677777777765  888888765

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=1.8e-11  Score=105.06  Aligned_cols=149  Identities=12%  Similarity=0.117  Sum_probs=103.8

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccccc-------hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~   85 (222)
                      .+.+.+.+..+++..+..+...-.+-|.       -...||..+...       ....++..|||.+||+|.+.+.+|..
T Consensus       150 ~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l-------~~~~~~~~vlDp~CGSGt~~ieaa~~  222 (393)
T 3k0b_A          150 KLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLL-------TSWHPDRPFYDPVCGSGTIPIEAALI  222 (393)
T ss_dssp             CEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHH-------SCCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHH-------hCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            5777788888888887644322222333       234566555544       23446788999999999999998876


Q ss_pred             CC----------------------------------------EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        86 g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      +.                                        +|+++|+ ++|++.+++|+..+++.            .
T Consensus       223 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~------------~  290 (393)
T 3k0b_A          223 GQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLG------------D  290 (393)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCT------------T
T ss_pred             hcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCC------------C
Confidence            43                                        4999999 66999999999998853            4


Q ss_pred             ceEEEEeecCCCccccccCCCccEEEEeccccCc----cCHHHHHHHHHHhcCC--CeEEEEEEEE
Q 027530          125 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGP--KTTILLGYEI  184 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~--~g~~~l~~~~  184 (222)
                      .+++.+.|+.+..    ...+||+|++++++...    .....+.+.+.+.+++  |+.+++....
T Consensus       291 ~I~~~~~D~~~~~----~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  352 (393)
T 3k0b_A          291 LITFRQLQVADFQ----TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY  352 (393)
T ss_dssp             CSEEEECCGGGCC----CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred             ceEEEECChHhCC----CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            6888886665432    13589999999886431    2344566666666654  8888887653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.32  E-value=3.8e-12  Score=100.80  Aligned_cols=106  Identities=22%  Similarity=0.231  Sum_probs=79.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..+..+++. +  .+|+++|+ +++++.+++|+..++...        ....++.+...|.... 
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~v~~~~~d~~~~-  145 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL--------LSSGRVQLVVGDGRMG-  145 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH--------HHTSSEEEEESCGGGC-
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc--------cCCCcEEEEECCcccC-
Confidence            346789999999999999999876 4  58999999 669999999998764200        0013678887665422 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                        .....+||+|++..++.      .+++.+.++|+|||.+++....
T Consensus       146 --~~~~~~fD~i~~~~~~~------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          146 --YAEEAPYDAIHVGAAAP------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             --CGGGCCEEEEEECSBBS------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             --cccCCCcCEEEECCchH------HHHHHHHHhcCCCcEEEEEEec
Confidence              22356899999887763      2456788999999999987754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.31  E-value=3.1e-11  Score=93.61  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=83.3

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecchhhHHHHHHHHHHhhccccccC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      ++..|.+.+...       ....++.+|||||||+|..++.+++.    +.+|+++|++++.          .       
T Consensus         6 ~~~kl~~~~~~~-------~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~-------   61 (201)
T 2plw_A            6 AAYKLIELDNKY-------LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P-------   61 (201)
T ss_dssp             THHHHHHHHHHH-------CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C-------
T ss_pred             HHHHHHHHHHHc-------CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C-------
Confidence            345566655443       12345679999999999999999976    3579999996531          0       


Q ss_pred             CCCCCCCCceEEEEeecCCCcc----------------c------cccCCCccEEEEeccccCcc----CH-------HH
Q 027530          117 PGSGNLLGSIQAVELDWGNEDH----------------I------KAVAPPFDYIIGTDVVYAEH----LL-------EP  163 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~----------------~------~~~~~~fD~Ii~~d~~y~~~----~~-------~~  163 (222)
                            ..++.+.+.|+.+...                .      .....+||+|+++..+++..    ..       ..
T Consensus        62 ------~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~  135 (201)
T 2plw_A           62 ------IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLS  135 (201)
T ss_dssp             ------CTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHH
T ss_pred             ------CCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHH
Confidence                  1245666666654320                0      02346899999976654421    11       23


Q ss_pred             HHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeE
Q 027530          164 LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       164 ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v  203 (222)
                      +++.+.++|+|||.+++.......  ...+...+...|..
T Consensus       136 ~l~~~~~~LkpgG~lv~~~~~~~~--~~~l~~~l~~~f~~  173 (201)
T 2plw_A          136 ITHFMEQYINIGGTYIVKMYLGSQ--TNNLKTYLKGMFQL  173 (201)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECSTT--HHHHHHHHHTTEEE
T ss_pred             HHHHHHHHccCCCEEEEEEeCCCC--HHHHHHHHHHHHhe
Confidence            778889999999999885543222  34555555555543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.31  E-value=7.3e-12  Score=101.69  Aligned_cols=96  Identities=11%  Similarity=0.048  Sum_probs=74.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..+..+++.  +.+|+++|. +++++.++++..                  ++.+...|+.+   .
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~------------------~~~~~~~d~~~---~  142 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP------------------QVTFCVASSHR---L  142 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT------------------TSEEEECCTTS---C
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC------------------CcEEEEcchhh---C
Confidence            35789999999999999999987  779999999 568888876531                  45667655543   3


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      +..+++||+|+++.+.       ..++.+.++|+|||.+++..+...
T Consensus       143 ~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          143 PFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             SBCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            3345789999987652       357889999999999999887654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=1.6e-11  Score=97.35  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C-------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD  132 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d  132 (222)
                      ..++.+|||+|||+|..+..+++. +       .+|+++|. +++++.+++|+..++...        ....++++...|
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------~~~~~v~~~~~d  153 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM--------LDSGQLLIVEGD  153 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH--------HHHTSEEEEESC
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc--------cCCCceEEEECC
Confidence            346789999999999999998874 4       48999998 679999999998765100        001367888766


Q ss_pred             cCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          133 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       133 ~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+.   .....+||+|+++.++.+      +.+.+.+.|+|||++++....
T Consensus       154 ~~~~---~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          154 GRKG---YPPNAPYNAIHVGAAAPD------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GGGC---CGGGCSEEEEEECSCBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred             cccC---CCcCCCccEEEECCchHH------HHHHHHHHhcCCCEEEEEEec
Confidence            5431   112368999999887754      337788999999999987753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.31  E-value=1.3e-11  Score=102.61  Aligned_cols=131  Identities=15%  Similarity=0.029  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|||||||+|..+..+++.  ..+|+++|+ +++++.+++++.......         ...++++...|..+... .
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~---------~~~~v~~~~~D~~~~~~-~  164 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL---------ADPRATVRVGDGLAFVR-Q  164 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG---------GCTTEEEEESCHHHHHH-S
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc---------CCCcEEEEECcHHHHHH-h
Confidence            5679999999999999999976  358999999 669999999874311000         13478888866543211 0


Q ss_pred             ccCCCccEEEEeccccCccCH----HHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhc-CCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLL----EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKS-NFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~----~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~-~~~v~  204 (222)
                      ..+++||+|++..+.......    ..+++.+.++|+|||++++.....  .......+.+.+++ +|...
T Consensus       165 ~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v  235 (304)
T 3bwc_A          165 TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASV  235 (304)
T ss_dssp             SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEE
T ss_pred             ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcE
Confidence            035789999986554332211    578999999999999998875432  12234556666654 58543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.31  E-value=2.5e-11  Score=101.96  Aligned_cols=126  Identities=13%  Similarity=0.067  Sum_probs=81.9

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++.+|||+|||+|..++.+++. |  .+|+++|. +++++.+++|+...+..... +.. .....++++...|..+..
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~l-n~~-~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL-SHV-EEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT-TCS-SCCCCCEEEEESCTTCCC
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccc-ccc-cccCCceEEEECChHHcc
Confidence            447789999999999999999987 5  57999999 66999999999853200000 000 001247888887765432


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      . ...+++||+|+++..-     ...+++.+.++|+|||.+++.....  .....+++.+
T Consensus       181 ~-~~~~~~fD~V~~~~~~-----~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l  232 (336)
T 2b25_A          181 E-DIKSLTFDAVALDMLN-----PHVTLPVFYPHLKHGGVCAVYVVNI--TQVIELLDGI  232 (336)
T ss_dssp             --------EEEEEECSSS-----TTTTHHHHGGGEEEEEEEEEEESSH--HHHHHHHHHH
T ss_pred             c-ccCCCCeeEEEECCCC-----HHHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHHH
Confidence            1 1234579999986432     2347899999999999998766532  2234444444

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.30  E-value=6.6e-12  Score=98.55  Aligned_cols=111  Identities=10%  Similarity=0.022  Sum_probs=80.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .++.+|||+|||+|..+..+   +.+|+++|.++.          +                 +.+...|..+   .+..
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~-----------------~~~~~~d~~~---~~~~  112 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------D-----------------PRVTVCDMAQ---VPLE  112 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------S-----------------TTEEESCTTS---CSCC
T ss_pred             CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------C-----------------ceEEEecccc---CCCC
Confidence            35679999999999988776   378999998543          1                 1334444433   2334


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEec
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                      +++||+|+++.++++ .....+++.+.++|+|||.+++............+.+.++ .+|.+....
T Consensus       113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  177 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD  177 (215)
T ss_dssp             TTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence            678999999999974 7788999999999999999999876543223456666664 578776543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.30  E-value=6.4e-12  Score=102.85  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             CCCeEEEeCCCccH----HHHHHHHh-C-----CEEEEecc-hhhHHHHHHHHHHh----hcc-------ccccCCC-CC
Q 027530           64 KGKRVIELGAGCGV----AGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWN----TSR-------ISQMNPG-SG  120 (222)
Q Consensus        64 ~~~~vLelGcG~G~----~~i~la~~-g-----~~v~~~D~-~~~l~~~~~n~~~n----~~~-------~~~~~~~-~~  120 (222)
                      ++.+|||+|||||-    +++.++.. +     .+|+++|+ ++|++.|++++...    +++       ....... .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    56666654 3     48999999 56999999875210    000       0000000 00


Q ss_pred             ------CCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          121 ------NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       121 ------~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                            ....+|.+.+.|+.+.. .+ ..++||+|+|..++.+.  +....+++.+.+.|+|||.+++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence                  00136889998876531 11 14689999998887543  334789999999999999998854

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.28  E-value=1.6e-11  Score=101.59  Aligned_cols=125  Identities=13%  Similarity=0.034  Sum_probs=83.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHH--hhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+++|||||||+|..+..+++. + .+|+++|+ +++++.+++|+..  ++..           ..++++...|..+.  
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~-----------~~~v~~~~~D~~~~--  156 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD-----------DPRAEIVIANGAEY--  156 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG-----------CTTEEEEESCHHHH--
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC-----------CCceEEEECcHHHH--
Confidence            4579999999999999999987 3 58999999 6699999999865  2221           24788888654322  


Q ss_pred             ccccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCC
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~  201 (222)
                      .....++||+|++..+-.+..     ....+++.+.++|+|||.+++....  ..........+.+++.|
T Consensus       157 l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F  226 (296)
T 1inl_A          157 VRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF  226 (296)
T ss_dssp             GGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred             HhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHC
Confidence            122356899999753211011     2267899999999999999886433  12223344455554444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.27  E-value=2.4e-11  Score=99.57  Aligned_cols=127  Identities=11%  Similarity=-0.016  Sum_probs=87.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|||||||+|..+..+++. + .+|+++|+ +++++.+++|+......         -...++++...|..+.  +.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~---------~~~~rv~v~~~D~~~~--l~  143 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK---------LDDPRVDVQVDDGFMH--IA  143 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT---------TTSTTEEEEESCSHHH--HH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc---------cCCCceEEEECcHHHH--Hh
Confidence            4579999999999999999987 4 58999999 66999999998642100         0135788888554321  22


Q ss_pred             ccCCCccEEEEeccccCcc-----CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~~  202 (222)
                      ...++||+|++.. .+...     ....+++.+.++|+|||++++....  ..........+.+++.|.
T Consensus       144 ~~~~~fD~Ii~d~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  211 (275)
T 1iy9_A          144 KSENQYDVIMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFP  211 (275)
T ss_dssp             TCCSCEEEEEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred             hCCCCeeEEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCC
Confidence            2357899999853 33211     1257999999999999998876432  223334555566666664

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.27  E-value=3.2e-11  Score=93.13  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=74.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C----------CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEE-
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G----------CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV-  129 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g----------~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~-  129 (222)
                      ..++.+|||||||+|..++.+++. +          .+|+++|++++.          .             ..++++. 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~-------------~~~~~~~~   76 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------P-------------LEGATFLC   76 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------C-------------CTTCEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------c-------------CCCCeEEE
Confidence            346789999999999999999987 4          679999996531          0             0245566 


Q ss_pred             EeecCCCccc-----cccCCCccEEEEeccccCccC----H-------HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHH
Q 027530          130 ELDWGNEDHI-----KAVAPPFDYIIGTDVVYAEHL----L-------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQM  193 (222)
Q Consensus       130 ~~d~~~~~~~-----~~~~~~fD~Ii~~d~~y~~~~----~-------~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f  193 (222)
                      ..|+.+....     ...+.+||+|+++........    .       ..+++.+.++|+|||.+++.......  ...+
T Consensus        77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~  154 (196)
T 2nyu_A           77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--SRRL  154 (196)
T ss_dssp             SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG--GHHH
T ss_pred             eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc--HHHH
Confidence            5554432110     012358999998754432111    1       46888899999999999887543322  2445


Q ss_pred             HHHHhcCC
Q 027530          194 LQMWKSNF  201 (222)
Q Consensus       194 ~~~~~~~~  201 (222)
                      .+.+...|
T Consensus       155 ~~~l~~~f  162 (196)
T 2nyu_A          155 QRRLTEEF  162 (196)
T ss_dssp             HHHHHHHE
T ss_pred             HHHHHHHh
Confidence            55444434

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.27  E-value=5.3e-11  Score=104.64  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=78.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      +|.+|||+|||+|..++.+|..   +.+|+++|+ +++++.+++|++++++             .++.+...|..+... 
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-------------~nv~~~~~D~~~~~~-  182 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-------------SNVALTHFDGRVFGA-  182 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-------------CSEEEECCCSTTHHH-
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CcEEEEeCCHHHhhh-
Confidence            6789999999999999998876   358999999 5699999999998874             267787765543211 


Q ss_pred             cccCCCccEEEEecccc------Ccc----------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVY------AEH----------------LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y------~~~----------------~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ...++||.|++..+..      ...                ....+++.+.++|+|||+++++.-
T Consensus       183 -~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          183 -AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             -HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             -hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence             1356899999854321      111                124678888899999999987653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.26  E-value=3.5e-11  Score=100.41  Aligned_cols=127  Identities=16%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++.. |....         ...++++...|..+.  .
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~---------~~~~v~~~~~D~~~~--l  145 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF---------DDPRAVLVIDDARAY--L  145 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG---------GCTTEEEEESCHHHH--H
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc---------cCCceEEEEchHHHH--H
Confidence            4579999999999999999987  458999999 6699999998864 22000         024788887554322  2


Q ss_pred             cccCCCccEEEEeccccC---cc--C--HHHHHHHHHHhcCCCeEEEEEEEEcC---hhHHHHHHHHHhcCC
Q 027530          140 KAVAPPFDYIIGTDVVYA---EH--L--LEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNF  201 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~---~~--~--~~~ll~~~~~~l~~~g~~~l~~~~r~---~~~~~~f~~~~~~~~  201 (222)
                      ....++||+|++..+...   ..  .  ...+++.+.++|+|||.+++......   ........+.+++.|
T Consensus       146 ~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F  217 (314)
T 1uir_A          146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAF  217 (314)
T ss_dssp             HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTC
T ss_pred             HhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHC
Confidence            223578999998754432   10  0  36789999999999999988654322   233455556666555

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.26  E-value=2.3e-11  Score=101.07  Aligned_cols=107  Identities=15%  Similarity=0.034  Sum_probs=76.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH--hhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+++|||||||+|..+..+++..  .+|+++|+ +++++.+++|+..  ++..           ..++++...|..+.  
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~-----------~~rv~v~~~Da~~~--  161 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS-----------SSKLTLHVGDGFEF--  161 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-----------CTTEEEEESCHHHH--
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC-----------CCcEEEEECcHHHH--
Confidence            45799999999999999999874  58999999 6699999999865  2321           24788887554321  


Q ss_pred             ccccCCCccEEEEeccccCcc----CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEH----LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~----~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      +....++||+|++........    ....+++.+.++|+|||.+++...
T Consensus       162 l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          162 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            122357899999854321111    124689999999999999988653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.25  E-value=4.9e-11  Score=104.06  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=94.2

Q ss_pred             cchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccc
Q 027530           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQ  114 (222)
Q Consensus        39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~  114 (222)
                      -+++.+++..+.           ..+|.+|||+|||+|..++.+|.+   +.+|+++|+ +++++.+++|++++++.   
T Consensus        91 d~ss~l~~~~L~-----------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~---  156 (456)
T 3m4x_A           91 EPSAMIVGTAAA-----------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS---  156 (456)
T ss_dssp             CTTTHHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS---
T ss_pred             CHHHHHHHHHcC-----------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---
Confidence            345666666663           236789999999999999988875   358999999 56999999999998853   


Q ss_pred             cCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC------c----------------cCHHHHHHHHHHhc
Q 027530          115 MNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------E----------------HLLEPLLQTIFALS  172 (222)
Q Consensus       115 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~------~----------------~~~~~ll~~~~~~l  172 (222)
                                ++.+...|..+..  ....++||+|++..+-..      .                .....+++.+.++|
T Consensus       157 ----------nv~v~~~Da~~l~--~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L  224 (456)
T 3m4x_A          157 ----------NAIVTNHAPAELV--PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML  224 (456)
T ss_dssp             ----------SEEEECCCHHHHH--HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE
T ss_pred             ----------ceEEEeCCHHHhh--hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence                      6777764433221  113578999998765211      0                01236788888999


Q ss_pred             CCCeEEEEEEEEc----ChhHHHHHHHHHhcCCeEEEe
Q 027530          173 GPKTTILLGYEIR----STSVHEQMLQMWKSNFNVKLV  206 (222)
Q Consensus       173 ~~~g~~~l~~~~r----~~~~~~~f~~~~~~~~~v~~v  206 (222)
                      +|||++++++-.-    +......|++..  .|++..+
T Consensus       225 kpGG~LvYsTCs~~~eEne~vv~~~l~~~--~~~l~~~  260 (456)
T 3m4x_A          225 KNKGQLIYSTCTFAPEENEEIISWLVENY--PVTIEEI  260 (456)
T ss_dssp             EEEEEEEEEESCCCGGGTHHHHHHHHHHS--SEEEECC
T ss_pred             CCCcEEEEEEeecccccCHHHHHHHHHhC--CCEEEec
Confidence            9999988765322    223344555432  3555544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.25  E-value=1.4e-11  Score=105.35  Aligned_cols=113  Identities=19%  Similarity=0.094  Sum_probs=77.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC--CCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG--NLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~--~~~~~v~~~~~d~~~~~~  138 (222)
                      ++.+|||+|||+|..++.+++. + .+|+++|+ +++++.+++|++.|........+...  ....++++.+.|..+.. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~-  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM-  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH-
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH-
Confidence            5689999999999999999987 4 47999999 66999999999999200000000000  00123777775543321 


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       .....+||+|+. |+.+   ...+++..+.+.++++|.++++.
T Consensus       126 -~~~~~~fD~I~l-DP~~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 -AERHRYFHFIDL-DPFG---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             -HHSTTCEEEEEE-CCSS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -HhccCCCCEEEe-CCCC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence             112457999995 5543   23678899999999999988875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.24  E-value=1.8e-11  Score=100.79  Aligned_cols=79  Identities=18%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..++.            ..++++...|..+..   
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~~v~~~~~D~~~~~---   90 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV------------ASKLQVLVGDVLKTD---   90 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT------------GGGEEEEESCTTTSC---
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC------------CCceEEEEcceeccc---
Confidence            446789999999999999999999999999999 5699999998875542            147888887765432   


Q ss_pred             ccCCCccEEEEeccccC
Q 027530          141 AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~  157 (222)
                        .+.||+|+++.+++.
T Consensus        91 --~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           91 --LPFFDTCVANLPYQI  105 (285)
T ss_dssp             --CCCCSEEEEECCGGG
T ss_pred             --chhhcEEEEecCccc
Confidence              237999999877654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.24  E-value=3.1e-11  Score=99.20  Aligned_cols=130  Identities=18%  Similarity=0.064  Sum_probs=83.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHh--hccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++|||||||+|..+..+++.+. +|+++|+ +++++.+++|+ ..  ++......    ....++++...|..+.  .
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~----~~~~~v~~~~~D~~~~--l  147 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLN----GKHEKAKLTIGDGFEF--I  147 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHT----TCCSSEEEEESCHHHH--H
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcccccccccc----CCCCcEEEEECchHHH--h
Confidence            457999999999999999998854 7999999 66999999987 32  11000000    0124788887553221  1


Q ss_pred             cccCCCccEEEEeccccCc--cC--HHHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCC
Q 027530          140 KAVAPPFDYIIGTDVVYAE--HL--LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  201 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~--~~--~~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~  201 (222)
                      .. .++||+|++..+....  ..  ...+++.+.++|+|||.+++.....  .......+.+.++..|
T Consensus       148 ~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f  214 (281)
T 1mjf_A          148 KN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVF  214 (281)
T ss_dssp             HH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHC
T ss_pred             cc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHC
Confidence            22 5789999986442211  11  3678999999999999998865432  2333444445444444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.24  E-value=2e-11  Score=102.72  Aligned_cols=106  Identities=15%  Similarity=0.031  Sum_probs=77.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh--hccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++|||||||+|..+..+++.  +.+|+++|+ +++++.+++|+...  ++.           ..++++...|+.+...
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~-----------~~rv~~~~~D~~~~l~  188 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE-----------DPRVNLVIGDGVAFLK  188 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG-----------STTEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC-----------CCcEEEEECCHHHHHH
Confidence            4579999999999999999987  358999999 66999999998753  221           2478888866543210


Q ss_pred             ccccCCCccEEEEecc--ccCccC--HHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVAPPFDYIIGTDV--VYAEHL--LEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~--~y~~~~--~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       ....++||+|+++..  ......  ...+++.+.++|+|||.+++.
T Consensus       189 -~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          189 -NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             -TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             112468999998543  221111  367999999999999998885

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.23  E-value=1.5e-11  Score=105.28  Aligned_cols=101  Identities=12%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCc-eEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGS-IQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~  138 (222)
                      +|.+|||++||+|..|+.+++.  |+ +|+++|+ +++++.+++|++.|++.            .+ +++...|..+.  
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~------------~~~v~v~~~Da~~~--  117 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP------------EDRYEIHGMEANFF--  117 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC------------GGGEEEECSCHHHH--
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC------------CceEEEEeCCHHHH--
Confidence            4679999999999999999985  54 6999999 67999999999999853            34 78887554322  


Q ss_pred             cc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .. ....+||+|+..+  |.  ....+++.+.++|++||.++++.
T Consensus       118 l~~~~~~~fD~V~lDP--~g--~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          118 LRKEWGFGFDYVDLDP--FG--TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             HHSCCSSCEEEEEECC--SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhhCCCCcEEEECC--Cc--CHHHHHHHHHHHhCCCCEEEEEe
Confidence            11 1245799999765  32  33568999999999999988877

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.23  E-value=1.1e-10  Score=98.90  Aligned_cols=102  Identities=22%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ..++|||||||+|..++.+++...  +++..|.+++++.+++++...+             .++|++...|.-+.     
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-------------~~rv~~~~gD~~~~-----  240 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-------------EEQIDFQEGDFFKD-----  240 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---------------CCSEEEEESCTTTS-----
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-------------cCceeeecCccccC-----
Confidence            457899999999999999998855  6888899999999988775433             35899999776432     


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..+.+|+|+...++++.++  ...+++.+.+.|+|||+++|...
T Consensus       241 ~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~  284 (353)
T 4a6d_A          241 PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES  284 (353)
T ss_dssp             CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence            2346899999999988655  35689999999999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.22  E-value=8.5e-11  Score=102.69  Aligned_cols=139  Identities=16%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhcccccc
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (222)
                      .++.+++..+.           ..+|.+|||+|||+|..++.+|.+   ..+|+++|+ +++++.+++|++++++     
T Consensus        88 ~ss~l~a~~L~-----------~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~-----  151 (464)
T 3m6w_A           88 PSAQAVGVLLD-----------PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA-----  151 (464)
T ss_dssp             TTTHHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhcC-----------cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence            45666666653           236789999999999999999875   258999999 6699999999998873     


Q ss_pred             CCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccc------cCccC----------------HHHHHHHHHHhcC
Q 027530          116 NPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------YAEHL----------------LEPLLQTIFALSG  173 (222)
Q Consensus       116 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~------y~~~~----------------~~~ll~~~~~~l~  173 (222)
                              . +.+...|..+..  ....++||+|++..+.      .....                ...+++.+.++|+
T Consensus       152 --------~-v~~~~~Da~~l~--~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk  220 (464)
T 3m6w_A          152 --------P-LAVTQAPPRALA--EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG  220 (464)
T ss_dssp             --------C-CEEECSCHHHHH--HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE
T ss_pred             --------e-EEEEECCHHHhh--hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    2 666664433211  1135789999975442      11111                2668888899999


Q ss_pred             CCeEEEEEEEEc----ChhHHHHHHHHHhcCCeEEEe
Q 027530          174 PKTTILLGYEIR----STSVHEQMLQMWKSNFNVKLV  206 (222)
Q Consensus       174 ~~g~~~l~~~~r----~~~~~~~f~~~~~~~~~v~~v  206 (222)
                      |||+++++.-.-    +......|++.. .+|++..+
T Consensus       221 pGG~LvysTCs~~~eEne~vv~~~l~~~-~~~~l~~~  256 (464)
T 3m6w_A          221 PGGVLVYSTCTFAPEENEGVVAHFLKAH-PEFRLEDA  256 (464)
T ss_dssp             EEEEEEEEESCCCGGGTHHHHHHHHHHC-TTEEEECC
T ss_pred             CCcEEEEEeccCchhcCHHHHHHHHHHC-CCcEEEec
Confidence            999988764322    223344444422 14555544

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.22  E-value=3.8e-11  Score=98.78  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=87.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|||||||+|..+..+++..  .+|+++|+ +++++.+++++...+...         ...++++...|..+.  ..
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~---------~~~~v~~~~~D~~~~--l~  146 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY---------EDKRVNVFIEDASKF--LE  146 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG---------GSTTEEEEESCHHHH--HH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc---------CCCcEEEEECChHHH--HH
Confidence            45799999999999999999773  58999999 669999999876432110         124788887554322  12


Q ss_pred             ccCCCccEEEEeccccC--ccCH--HHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGTDVVYA--EHLL--EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~--~~~~--~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~~  202 (222)
                      ...++||+|++..+...  ....  ..+++.+.++|+|||.+++.....  .......+.+.+++.|.
T Consensus       147 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  214 (283)
T 2i7c_A          147 NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK  214 (283)
T ss_dssp             HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred             hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence            22578999998432211  1112  689999999999999988764322  22334556666666554

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.21  E-value=2.5e-11  Score=101.28  Aligned_cols=106  Identities=15%  Similarity=-0.004  Sum_probs=74.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh--hccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++...  +..           ..++++...|..+.  
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~-----------~~rv~~~~~D~~~~--  174 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS-----------HPKLDLFCGDGFEF--  174 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG-----------CTTEEEECSCHHHH--
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC-----------CCCEEEEEChHHHH--
Confidence            4479999999999999999976  358999999 66999999988643  211           24788887554321  


Q ss_pred             ccccCCCccEEEEeccccCc---cCH-HHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE---HLL-EPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~---~~~-~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +....++||+|++...-...   ... ..+++.+.++|+|||.+++..
T Consensus       175 l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          175 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             HHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             HHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            12235789999975422111   112 678999999999999988764

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.21  E-value=1.1e-10  Score=98.37  Aligned_cols=103  Identities=10%  Similarity=-0.022  Sum_probs=78.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ++.+|||+|||+|...+.+++..       .+++++|+ +.+++.|+.|+..++.              ++.+...|...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--------------~~~i~~~D~l~  195 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--------------KMTLLHQDGLA  195 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--------------CCEEEESCTTS
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--------------CceEEECCCCC
Confidence            45789999999999999888653       57999999 6699999999987763              45666655443


Q ss_pred             CccccccCCCccEEEEeccccCccC------------------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          136 EDHIKAVAPPFDYIIGTDVVYAEHL------------------LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d~~y~~~~------------------~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..    ...+||+|++++++.....                  ...++..+.+.|+|||++++..+.
T Consensus       196 ~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          196 NL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             CC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             cc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            21    2468999999999522211                  125788889999999999888753

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.21  E-value=8.9e-12  Score=102.16  Aligned_cols=122  Identities=11%  Similarity=0.007  Sum_probs=74.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEE--EeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV--ELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~  139 (222)
                      ..++.+|||||||+|..+..+++. .+|+++|++.++..++++    ....       .....++.+.  +.|..   .+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~~~-------~~~~~~v~~~~~~~D~~---~l  144 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PRLV-------ETFGWNLITFKSKVDVT---KM  144 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CCCC-------CCTTGGGEEEECSCCGG---GC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hhhh-------hhcCCCeEEEeccCcHh---hC
Confidence            346789999999999999999988 789999996553322211    0000       0011256776  54443   22


Q ss_pred             cccCCCccEEEEeccccCccCH----H---HHHHHHHHhcCCCe--EEEEEEEEcChhHHHHHHHHHhcCC
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGYEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~----~---~ll~~~~~~l~~~g--~~~l~~~~r~~~~~~~f~~~~~~~~  201 (222)
                      +  +++||+|++.-. +.....    .   .+++.+.++|+|||  .+++............+++.++..|
T Consensus       145 ~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f  212 (276)
T 2wa2_A          145 E--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARF  212 (276)
T ss_dssp             C--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             C--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHc
Confidence            2  578999998755 322221    1   36788889999999  8877443322221224555554444

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.21  E-value=1.9e-10  Score=99.87  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=85.1

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      .++..++..+.           ..+|.+|||+|||+|..++.++..+  .+|+++|. +.+++.+++|++.++.      
T Consensus       233 ~~s~~~~~~l~-----------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~------  295 (429)
T 1sqg_A          233 ASAQGCMTWLA-----------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------  295 (429)
T ss_dssp             HHHHTHHHHHC-----------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHcC-----------CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC------
Confidence            45555566553           2367899999999999999999875  58999999 5699999999998773      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC------ccC----------------HHHHHHHHHHhcCC
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGP  174 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~------~~~----------------~~~ll~~~~~~l~~  174 (222)
                              ++.+...|..+... ....++||+|++..+...      .+.                ...+++.+.++|+|
T Consensus       296 --------~~~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp  366 (429)
T 1sqg_A          296 --------KATVKQGDGRYPSQ-WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT  366 (429)
T ss_dssp             --------CCEEEECCTTCTHH-HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             --------CeEEEeCchhhchh-hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                    35677766554321 022468999998544321      111                14678889999999


Q ss_pred             CeEEEEEE
Q 027530          175 KTTILLGY  182 (222)
Q Consensus       175 ~g~~~l~~  182 (222)
                      ||.++++.
T Consensus       367 GG~lvyst  374 (429)
T 1sqg_A          367 GGTLVYAT  374 (429)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEEE
Confidence            99998876

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.6e-10  Score=101.00  Aligned_cols=108  Identities=18%  Similarity=0.075  Sum_probs=79.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||+|||+|..++.++..  + .+|+++|. +.+++.+++|+++++.             .++.+...|..+...
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-------------~~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-------------KIVKPLVKDARKAPE  324 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-------------CSEEEECSCTTCCSS
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-------------CcEEEEEcChhhcch
Confidence            36789999999999999998875  3 58999999 5699999999998874             367888766654321


Q ss_pred             ccccCCCccEEEEeccc------cCccCH----------------HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVV------YAEHLL----------------EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~------y~~~~~----------------~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       ...+++||+|++..+.      ...+..                ..+++.+.++|+|||.++++.-.
T Consensus       325 -~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          325 -IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             -SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             -hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence             1223679999974332      211111                56888999999999999876543

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.19  E-value=9.5e-11  Score=97.11  Aligned_cols=78  Identities=21%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..++.             .++++...|+.+..   
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-------------~~v~~~~~D~~~~~---  103 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-------------NNLEVYEGDAIKTV---  103 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEC----CCSSC---
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-------------CceEEEECchhhCC---
Confidence            346789999999999999999999999999999 6699999999987653             36788876665432   


Q ss_pred             ccCCCccEEEEeccccC
Q 027530          141 AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~  157 (222)
                        ..+||+|+++.+++.
T Consensus       104 --~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          104 --FPKFDVCTANIPYKI  118 (299)
T ss_dssp             --CCCCSEEEEECCGGG
T ss_pred             --cccCCEEEEcCCccc
Confidence              247999999877654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.18  E-value=7.9e-11  Score=98.00  Aligned_cols=122  Identities=12%  Similarity=0.007  Sum_probs=84.5

Q ss_pred             CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+|||||||+|.++..+++.  +.+|+++|+ +++++.+++++..+.             ..++++...|..+... ...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-------------~~rv~v~~~Da~~~l~-~~~  156 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-------------APRVKIRVDDARMVAE-SFT  156 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-------------TTTEEEEESCHHHHHH-TCC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-------------CCceEEEECcHHHHHh-hcc
Confidence            48999999999999999983  568999999 669999999875432             3478888755432210 112


Q ss_pred             CCCccEEEEeccc--cCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh-hHHHHHHHHHhcCC
Q 027530          143 APPFDYIIGTDVV--YAEHL--LEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKSNF  201 (222)
Q Consensus       143 ~~~fD~Ii~~d~~--y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~-~~~~~f~~~~~~~~  201 (222)
                      .++||+|++.-..  +....  ...+++.++++|+|||++++....... .....+++.+++.|
T Consensus       157 ~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF  220 (317)
T 3gjy_A          157 PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVF  220 (317)
T ss_dssp             TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHC
Confidence            5789999974221  11111  267999999999999998876653322 23445566666666

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.17  E-value=5e-11  Score=95.97  Aligned_cols=100  Identities=8%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      -.+|||||||+|.+++.++..  .++|+++|+ +.+++.+++|+..|++              ..++...|...    ..
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--------------~~~~~v~D~~~----~~  194 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--------------PHRTNVADLLE----DR  194 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--------------CEEEEECCTTT----SC
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--------------CceEEEeeecc----cC
Confidence            458999999999999999877  347999999 5599999999999884              34555544332    22


Q ss_pred             cCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +..+||+++++.++.+.+..  ...+ .+.+.|+++|.+ ++.+.
T Consensus       195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~  237 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIV-VTFPT  237 (281)
T ss_dssp             CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEE-EEEEC
T ss_pred             CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEE-Eeccc
Confidence            46789999999988664332  2244 678888999875 55555

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.16  E-value=9.8e-11  Score=95.26  Aligned_cols=119  Identities=7%  Similarity=-0.060  Sum_probs=81.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH--hhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+++|||||||+|..+..+++.+.+|+++|+ +++++.+++++..  ++..           ..++++...|..+.    
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~-----------~~rv~~~~~D~~~~----  136 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN-----------NKNFTHAKQLLDLD----  136 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT-----------CTTEEEESSGGGSC----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC-----------CCeEEEEechHHHH----
Confidence            4579999999999999888876767999999 6699999887643  1211           24677776443322    


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--hHHHHHHHHHhcCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~--~~~~~f~~~~~~~~~v~  204 (222)
                       . ++||+|++. .    .....+++.+.++|+|||.+++.......  .......+.++..|...
T Consensus       137 -~-~~fD~Ii~d-~----~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~  195 (262)
T 2cmg_A          137 -I-KKYDLIFCL-Q----EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVA  195 (262)
T ss_dssp             -C-CCEEEEEES-S----CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEE
T ss_pred             -H-hhCCEEEEC-C----CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCce
Confidence             1 689999976 2    12234899999999999998876443221  22344445555556443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.16  E-value=2.1e-10  Score=91.43  Aligned_cols=100  Identities=8%  Similarity=-0.047  Sum_probs=73.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ...+|||||||+|.+++.+. -+.+|+++|+ +.+++.+++++..++.              +..+...|....   + .
T Consensus       105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--------------~~~~~v~D~~~~---~-~  165 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--------------DFTFALQDVLCA---P-P  165 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--------------EEEEEECCTTTS---C-C
T ss_pred             CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--------------CceEEEeecccC---C-C
Confidence            45799999999999999988 5568999999 5699999999998873              456666444322   2 3


Q ss_pred             CCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..+||+|++..++++.+..  ...+ .+.+.|++++++ ++.+.
T Consensus       166 ~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vv-VsfPt  207 (253)
T 3frh_A          166 AEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMA-VSFPT  207 (253)
T ss_dssp             CCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEE-EEEEC
T ss_pred             CCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEE-EEcCh
Confidence            5689999999887653322  1233 555678888764 55653

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.15  E-value=2.3e-11  Score=99.14  Aligned_cols=135  Identities=12%  Similarity=0.016  Sum_probs=80.1

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ++..|.+.+...        ...++.+|||||||+|..+..+++. .+|+++|+++++..++++    ....       .
T Consensus        59 ~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~----~~~~-------~  118 (265)
T 2oxt_A           59 GTAKLAWMEERG--------YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEV----PRIT-------E  118 (265)
T ss_dssp             HHHHHHHHHHHT--------SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCC----CCCC-------C
T ss_pred             HHHHHHHHHHcC--------CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhh----hhhh-------h
Confidence            455565555432        2346789999999999999999988 789999995553222111    0000       0


Q ss_pred             CCCCceEEE--EeecCCCccccccCCCccEEEEeccccCccCH----H---HHHHHHHHhcCCCe--EEEEEEEEcChhH
Q 027530          121 NLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGYEIRSTSV  189 (222)
Q Consensus       121 ~~~~~v~~~--~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~---~ll~~~~~~l~~~g--~~~l~~~~r~~~~  189 (222)
                      ....++.+.  +.|..+   ++  +.+||+|++.-. +.....    .   .+++.+.++|+|||  .+++.........
T Consensus       119 ~~~~~v~~~~~~~D~~~---l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~  192 (265)
T 2oxt_A          119 SYGWNIVKFKSRVDIHT---LP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVE  192 (265)
T ss_dssp             BTTGGGEEEECSCCTTT---SC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHH
T ss_pred             ccCCCeEEEecccCHhH---CC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChh
Confidence            011256766  645443   22  578999998654 322221    1   26788889999999  8877543322211


Q ss_pred             HHHHHHHHhcCC
Q 027530          190 HEQMLQMWKSNF  201 (222)
Q Consensus       190 ~~~f~~~~~~~~  201 (222)
                      ...++..+...|
T Consensus       193 ~~~~l~~l~~~f  204 (265)
T 2oxt_A          193 VMERLSVMQRKW  204 (265)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            124555544433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.14  E-value=1.3e-10  Score=98.22  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=76.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||+|||+|..+..+++.  +.+++++|++++++.+++                   ..++++...|..+.  .  
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------------------~~~v~~~~~d~~~~--~--  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-------------------SNNLTYVGGDMFTS--I--  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------------------BTTEEEEECCTTTC--C--
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-------------------CCCcEEEeccccCC--C--
Confidence            4579999999999999999977  458999999667766543                   02478888666431  1  


Q ss_pred             cCCCccEEEEeccccCccCHH--HHHHHHHHhcCC---CeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~---~g~~~l~~~~  184 (222)
                       + .||+|+++.++++.....  .+++.+.+.|+|   ||++++....
T Consensus       245 -p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          245 -P-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             -C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             -C-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence             2 399999999999877666  899999999999   9999988654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.13  E-value=8e-10  Score=101.39  Aligned_cols=151  Identities=12%  Similarity=0.047  Sum_probs=104.0

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccccc-------hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~   85 (222)
                      .|.+.+.+...++..+..+...-.+-|.       -...||..+...       ....++..|||.+||+|.+.+.+|..
T Consensus       139 ~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~-------~~~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          139 RVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMR-------SGWQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             EEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHH-------TTCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHh-------hCCCCCCeEEecCCCCcHHHHHHHHH
Confidence            4777788888888887654332223332       234666666554       23346778999999999999988865


Q ss_pred             C--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      +                                            .+|+|+|+ +++++.++.|+..+++.         
T Consensus       212 a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~---------  282 (703)
T 3v97_A          212 ATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIG---------  282 (703)
T ss_dssp             HTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCG---------
T ss_pred             HhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCC---------
Confidence            3                                            46999999 67999999999999864         


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccC----ccCHHHHHHHHHHhc---CCCeEEEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALS---GPKTTILLGYE  183 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~----~~~~~~ll~~~~~~l---~~~g~~~l~~~  183 (222)
                         ..+++.+.|..+... +...++||+||+|+++-.    ......+.+.+.+.+   .|||.+++...
T Consensus       283 ---~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          283 ---ELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             ---GGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             ---CceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence               468888866654321 111238999999988632    123455666665554   58998888653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.12  E-value=2.3e-10  Score=97.43  Aligned_cols=96  Identities=17%  Similarity=0.047  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++.+|||||||+|..+..+++.+.  +++++|++++++.+++                   ..++++...|..+.  .  
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------------------~~~v~~~~~d~~~~--~--  265 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-------------------LSGIEHVGGDMFAS--V--  265 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------------------CTTEEEEECCTTTC--C--
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-------------------cCCCEEEeCCcccC--C--
Confidence            467999999999999999998754  6888899667765543                   12578888766541  1  


Q ss_pred             cCCCccEEEEeccccCccCHH--HHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                       + .||+|+++.++++.....  .+++.+.++|+|||++++....
T Consensus       266 -~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          266 -P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             -C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             2 299999999998877666  8999999999999999988643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.12  E-value=3.8e-10  Score=97.31  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      ...+++++.+..       ...++.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+                
T Consensus        24 P~~l~~~~~~~~-------~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------------   80 (421)
T 2ih2_A           24 PPEVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------------   80 (421)
T ss_dssp             CHHHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------------
T ss_pred             CHHHHHHHHHhh-------ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------------
Confidence            456777777653       2234569999999999999999874   468999999 5677655                


Q ss_pred             CCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-----------------------------HHHHHHHH
Q 027530          118 GSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------------------LEPLLQTI  168 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----------------------------~~~ll~~~  168 (222)
                            .++.+.+.|..+..    ..++||+|++++++.....                             ...++..+
T Consensus        81 ------~~~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~  150 (421)
T 2ih2_A           81 ------PWAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKA  150 (421)
T ss_dssp             ------TTEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHH
T ss_pred             ------CCCcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHH
Confidence                  14566775554321    2468999999988764322                             12568888


Q ss_pred             HHhcCCCeEEEEEEEEc
Q 027530          169 FALSGPKTTILLGYEIR  185 (222)
Q Consensus       169 ~~~l~~~g~~~l~~~~r  185 (222)
                      .++|+|+|.+.+..+..
T Consensus       151 ~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          151 VRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             HHHEEEEEEEEEEEEGG
T ss_pred             HHHhCCCCEEEEEEChH
Confidence            89999999998888753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.12  E-value=6.3e-10  Score=91.89  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++++..               ..++++...|+.+..  
T Consensus        47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~---------------~~~v~vi~gD~l~~~--  109 (295)
T 3gru_A           47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL---------------YNNIEIIWGDALKVD--  109 (295)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH---------------CSSEEEEESCTTTSC--
T ss_pred             CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc---------------CCCeEEEECchhhCC--
Confidence            3456789999999999999999999999999999 6699999998872               147888887765532  


Q ss_pred             cccCCCccEEEEeccccC
Q 027530          140 KAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~  157 (222)
                       ....+||.|+++.+++.
T Consensus       110 -~~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          110 -LNKLDFNKVVANLPYQI  126 (295)
T ss_dssp             -GGGSCCSEEEEECCGGG
T ss_pred             -cccCCccEEEEeCcccc
Confidence             23457999999977653

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.08  E-value=2.5e-10  Score=86.82  Aligned_cols=111  Identities=12%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+|.+|||||||.              +.+|. ++|++.++++...                 ++++...|..+.....
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~-----------------~~~~~~~d~~~~~~~~   58 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN-----------------EGRVSVENIKQLLQSA   58 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT-----------------TSEEEEEEGGGGGGGC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc-----------------CcEEEEechhcCcccc
Confidence            34678999999996              23898 5699999876531                 3577776665432111


Q ss_pred             ccCCCccEEEEeccccCc-cCHHHHHHHHHHhcCCCeEEEEEEEEcCh-------hHHHHHHHHHh-cCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAE-HLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~-~~~~~ll~~~~~~l~~~g~~~l~~~~r~~-------~~~~~f~~~~~-~~~~v~  204 (222)
                      ..+++||+|+++.++++. .....+++.++++|||||.+++..+....       .....+.+.++ .+| ++
T Consensus        59 ~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           59 HKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             CCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             CCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence            146789999999999887 78899999999999999999997653221       11355666654 588 54

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.08  E-value=1.9e-10  Score=98.79  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=63.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh--hccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      |.+|||||||+|..++.+++.+++|+++|. +++++.+++|++.+  ++             .++++.+.|..+.... .
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-------------~~i~~i~~Da~~~L~~-~  159 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-------------KDVNILTGDFKEYLPL-I  159 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-------------CEEEEEESCGGGSHHH-H
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-------------CcEEEEECcHHHhhhh-c
Confidence            789999999999999999999999999999 66999999999987  53             3788888776543111 1


Q ss_pred             cCCCccEEEEeccccC
Q 027530          142 VAPPFDYIIGTDVVYA  157 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~  157 (222)
                      ...+||+|++.++...
T Consensus       160 ~~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          160 KTFHPDYIYVDPARRS  175 (410)
T ss_dssp             HHHCCSEEEECCEEC-
T ss_pred             cCCCceEEEECCCCcC
Confidence            1358999998777654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.08  E-value=7.1e-10  Score=94.38  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=74.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .+.+|||||||+|..+..+++..  .+++++|++++++.+++                   ..++++...|..+.  .  
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------------------~~~v~~~~~d~~~~--~--  259 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-------------------FSGVEHLGGDMFDG--V--  259 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------------------CTTEEEEECCTTTC--C--
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh-------------------cCCCEEEecCCCCC--C--
Confidence            45799999999999999999864  47999999777765542                   13688888776541  1  


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +. . |+|++..++++...  ...+++.+.+.|+|||++++....
T Consensus       260 p~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          260 PK-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             CC-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CC-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            12 2 99999999986554  457899999999999999987643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.06  E-value=1.1e-09  Score=95.54  Aligned_cols=107  Identities=13%  Similarity=-0.003  Sum_probs=79.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      ..+.+|||.|||+|...+.+++.               +.+++|+|+ +.+++.|+.|+..++..           ...+
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~-----------~~~~  238 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG-----------TDRS  238 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-----------SSCC
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC-----------cCCC
Confidence            35679999999999988887753               357999999 67999999999987742           1144


Q ss_pred             EEEEeecCCCccccccCCCccEEEEeccccCccC-----------------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          127 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----------------~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+.+.|.-...    ...+||+|++++++.....                 ...++..+.++|+|||++.+..+.
T Consensus       239 ~i~~gD~l~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          239 PIVCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             SEEECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CEeeCCCCCCc----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            55664443221    1348999999998764321                 136889999999999999888763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.06  E-value=8.9e-10  Score=93.65  Aligned_cols=96  Identities=16%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .+.+|||||||+|..+..+++..  .+++++|++++++.+++                   ..++++...|..+.  .  
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------------------~~~v~~~~~D~~~~--~--  257 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-------------------FPGVTHVGGDMFKE--V--  257 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------------------CTTEEEEECCTTTC--C--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-------------------cCCeEEEeCCcCCC--C--
Confidence            45799999999999999999864  47999999777665442                   13788998776541  1  


Q ss_pred             cCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +. . |+|++..++++..  ....+++.+++.|+|||++++....
T Consensus       258 p~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          258 PS-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             CC-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CC-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            22 2 9999999998654  4567999999999999999997654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.05  E-value=1.6e-10  Score=96.01  Aligned_cols=116  Identities=13%  Similarity=-0.032  Sum_probs=70.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-----hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEe-ecCCC
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-----IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVEL-DWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-----~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~-d~~~~  136 (222)
                      .++.+|||||||+|..+..+++. .+|+++|.     +.+++.+.  .  +..           ...++.+.+. |..+ 
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~--~~~-----------~~~~v~~~~~~D~~~-  143 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--M--STY-----------GWNLVRLQSGVDVFF-  143 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--C--CST-----------TGGGEEEECSCCTTT-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--h--hhc-----------CCCCeEEEecccccc-
Confidence            45789999999999999999988 68999997     33332110  0  000           0135777764 4332 


Q ss_pred             ccccccCCCccEEEEecccc---CccCHH---HHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc
Q 027530          137 DHIKAVAPPFDYIIGTDVVY---AEHLLE---PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  199 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y---~~~~~~---~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~  199 (222)
                        .  ...+||+|++.-...   +.....   .++..+.++|+|||.+++............++..++.
T Consensus       144 --l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~  208 (305)
T 2p41_A          144 --I--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  208 (305)
T ss_dssp             --S--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             --C--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence              2  246899999854331   111111   4677788999999987774432221223455555543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.04  E-value=5.2e-10  Score=90.57  Aligned_cols=80  Identities=15%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||||||+|.++..+++.+.+|+++|+ +++++.+++++..               ..++++.+.|..+.....
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~---------------~~~v~~i~~D~~~~~~~~   91 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ---------------QKNITIYQNDALQFDFSS   91 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT---------------CTTEEEEESCTTTCCGGG
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh---------------CCCcEEEEcchHhCCHHH
Confidence            446789999999999999999999999999999 5699999998763               137888887776553221


Q ss_pred             c-cCCCccEEEEeccccC
Q 027530          141 A-VAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~-~~~~fD~Ii~~d~~y~  157 (222)
                      . ...+|| |++|.+++-
T Consensus        92 ~~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           92 VKTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             SCCSSCEE-EEEECCHHH
T ss_pred             hccCCCeE-EEecCCccc
Confidence            1 135688 888877643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.03  E-value=1.5e-10  Score=93.98  Aligned_cols=81  Identities=19%  Similarity=0.062  Sum_probs=62.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-h-------hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ++.+|||+|||+|..++.+|+.|.+|+++|. +       ++++.+++|++.|++.            .++++...|..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~------------~ri~~~~~d~~~  150 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA------------ARINLHFGNAAE  150 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH------------TTEEEEESCHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc------------cCeEEEECCHHH
Confidence            5679999999999999999999999999998 8       8899999999888753            358888866543


Q ss_pred             CccccccC--CCccEEEEeccccC
Q 027530          136 EDHIKAVA--PPFDYIIGTDVVYA  157 (222)
Q Consensus       136 ~~~~~~~~--~~fD~Ii~~d~~y~  157 (222)
                      ... ...+  .+||+|++++++.+
T Consensus       151 ~l~-~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          151 QMP-ALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHH-HHHHHHCCCSEEEECCCC--
T ss_pred             HHH-hhhccCCCccEEEECCCCCC
Confidence            211 1112  68999998766543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.03  E-value=1.3e-09  Score=88.85  Aligned_cols=108  Identities=13%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             CeEEEeCCCc---cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           66 KRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        66 ~~vLelGcG~---G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+|||||||+   |.....+.+.  +++|+++|. +.|+..++.++..+.             ..++++++.|..+....
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-------------~~~~~~v~aD~~~~~~~  146 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-------------EGRTAYVEADMLDPASI  146 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-------------SSEEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-------------CCcEEEEEecccChhhh
Confidence            5899999997   3444333333  578999999 669999988775321             24688999887664211


Q ss_pred             ---cccCCCcc-----EEEEeccccCccC---HHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          140 ---KAVAPPFD-----YIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       140 ---~~~~~~fD-----~Ii~~d~~y~~~~---~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                         +.....||     .|+++.++++...   ...+++.+.+.|+|||.+++++....
T Consensus       147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence               10023344     5888999988665   46799999999999999999987654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.02  E-value=3.3e-09  Score=88.18  Aligned_cols=90  Identities=18%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhcccccc
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (222)
                      .++.+++.++.           ..+|.+|||+|||+|..++.++.+   ..+|+++|+ +++++.+++|++++++     
T Consensus        89 ~~s~l~~~~l~-----------~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----  152 (309)
T 2b9e_A           89 RASCLPAMLLD-----------PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----  152 (309)
T ss_dssp             TGGGHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHhC-----------CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence            45555566552           236789999999999999988875   258999999 6699999999998874     


Q ss_pred             CCCCCCCCCceEEEEeecCCCccccccCCCccEEEEec
Q 027530          116 NPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD  153 (222)
Q Consensus       116 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d  153 (222)
                              .++++...|+.+.........+||.|++..
T Consensus       153 --------~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~  182 (309)
T 2b9e_A          153 --------SCCELAEEDFLAVSPSDPRYHEVHYILLDP  182 (309)
T ss_dssp             --------CSEEEEECCGGGSCTTCGGGTTEEEEEECC
T ss_pred             --------CeEEEEeCChHhcCccccccCCCCEEEEcC
Confidence                    368888866654322111115799999743

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.02  E-value=6.2e-10  Score=95.01  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=69.3

Q ss_pred             CCCCeEEEeCCC------ccHHHHHHHHh---CCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEee
Q 027530           63 LKGKRVIELGAG------CGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELD  132 (222)
Q Consensus        63 ~~~~~vLelGcG------~G~~~i~la~~---g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d  132 (222)
                      .++.+|||||||      +|..++.+++.   +++|+++|++ +|.        .+              ..++++.+.|
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~--------------~~rI~fv~GD  272 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD--------------ELRIRTIQGD  272 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC--------------BTTEEEEECC
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc--------------CCCcEEEEec
Confidence            356899999999      66667766653   6789999994 452        01              2478999866


Q ss_pred             cCCCccc---cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          133 WGNEDHI---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       133 ~~~~~~~---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..+....   ....++||+|++... ++.......++.+.++|||||.+++..
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ccccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence            6543211   011478999998644 445567788999999999999998864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.02  E-value=5.4e-10  Score=94.60  Aligned_cols=96  Identities=15%  Similarity=0.039  Sum_probs=75.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .+.+|||||||+|..+..+++..  .+++++|.+++++.+++                   ..++++...|..+  ..  
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------------------~~~v~~~~~d~~~--~~--  249 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-------------------NENLNFVGGDMFK--SI--  249 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-------------------CSSEEEEECCTTT--CC--
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-------------------CCCcEEEeCccCC--CC--
Confidence            45799999999999999999874  47999999777655432                   1247888876654  11  


Q ss_pred             cCCCccEEEEeccccCccCHH--HHHHHHHHhcCC---CeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~--~ll~~~~~~l~~---~g~~~l~~~~  184 (222)
                        +.||+|+++.++++.....  .+++.+.+.|+|   ||++++....
T Consensus       250 --~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          250 --PSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             --CCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             --CCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence              2599999999999877655  899999999999   9999987654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.00  E-value=9.5e-09  Score=82.54  Aligned_cols=88  Identities=11%  Similarity=0.043  Sum_probs=62.5

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      ..+++.+.+.       ....++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++|+...             
T Consensus        16 ~~~~~~i~~~-------~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------   75 (244)
T 1qam_A           16 KHNIDKIMTN-------IRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH-------------   75 (244)
T ss_dssp             HHHHHHHHTT-------CCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-------------
T ss_pred             HHHHHHHHHh-------CCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC-------------
Confidence            4455555544       23346789999999999999999999999999999 56999999887521             


Q ss_pred             CCCceEEEEeecCCCcccccc-CCCccEEEEecccc
Q 027530          122 LLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVY  156 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~-~~~fD~Ii~~d~~y  156 (222)
                        .++++...|..+..   .. ...| .|+++.+++
T Consensus        76 --~~v~~~~~D~~~~~---~~~~~~~-~vv~nlPy~  105 (244)
T 1qam_A           76 --DNFQVLNKDILQFK---FPKNQSY-KIFGNIPYN  105 (244)
T ss_dssp             --CSEEEECCCGGGCC---CCSSCCC-EEEEECCGG
T ss_pred             --CCeEEEEChHHhCC---cccCCCe-EEEEeCCcc
Confidence              36788886654432   12 2344 577776654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.98  E-value=2.1e-11  Score=98.12  Aligned_cols=77  Identities=14%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..               ..++++...|+.+..   
T Consensus        27 ~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---------------~~~v~~~~~D~~~~~---   88 (245)
T 1yub_A           27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---------------NTRVTLIHQDILQFQ---   88 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---------------CSEEEECCSCCTTTT---
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---------------CCceEEEECChhhcC---
Confidence            346779999999999999999999999999999 5698888877651               136788876665432   


Q ss_pred             cc-CCCccEEEEeccccC
Q 027530          141 AV-APPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~-~~~fD~Ii~~d~~y~  157 (222)
                      .. .++| .|+++.+++.
T Consensus        89 ~~~~~~f-~vv~n~Py~~  105 (245)
T 1yub_A           89 FPNKQRY-KIVGNIPYHL  105 (245)
T ss_dssp             CCCSSEE-EEEEECCSSS
T ss_pred             cccCCCc-EEEEeCCccc
Confidence            12 2568 7888877654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.94  E-value=1.8e-09  Score=97.32  Aligned_cols=103  Identities=12%  Similarity=0.005  Sum_probs=75.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CC---EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ...+++.|||+|||+|.++..+++.   ++   +|+++|.+.+...+++.+..|+.            .++|++++.+..
T Consensus       354 ~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~------------~dkVtVI~gd~e  421 (637)
T 4gqb_A          354 KDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEW------------GSQVTVVSSDMR  421 (637)
T ss_dssp             TTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTT------------GGGEEEEESCTT
T ss_pred             ccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccC------------CCeEEEEeCcce
Confidence            3456678999999999995554443   32   58999987777788899999985            478999997776


Q ss_pred             CCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEE
Q 027530          135 NEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       135 ~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      +..    .++++|+||+--+=|.  .+.....+....++|||+|+++
T Consensus       422 ev~----LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          422 EWV----APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             TCC----CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             ecc----CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            653    3579999987432222  2233467888889999998764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.94  E-value=3.4e-09  Score=86.49  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++ +|||+|||+|.++..+++.+++|+++|+ +++++.+++++..                .++++.+.|..+.+.. 
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----------------~~v~vi~~D~l~~~~~-  106 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----------------LPVRLVFQDALLYPWE-  106 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----------------SSEEEEESCGGGSCGG-
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----------------CCEEEEECChhhCChh-
Confidence            3467 9999999999999999999999999999 5699999988651                3678888666543221 


Q ss_pred             ccCCCccEEEEeccccC
Q 027530          141 AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~  157 (222)
                       ....+|.|++|.+++-
T Consensus       107 -~~~~~~~iv~NlPy~i  122 (271)
T 3fut_A          107 -EVPQGSLLVANLPYHI  122 (271)
T ss_dssp             -GSCTTEEEEEEECSSC
T ss_pred             -hccCccEEEecCcccc
Confidence             1136899999988754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.87  E-value=5.1e-08  Score=86.83  Aligned_cols=130  Identities=9%  Similarity=-0.023  Sum_probs=87.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+.+|||.+||+|.+.+.+++.     ...++|+|+ +.++..|+.|+..++..           ..++.+...|.-..
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-----------~~~~~I~~gDtL~~  288 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-----------IENQFLHNADTLDE  288 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-----------GGGEEEEESCTTTS
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-----------cCccceEecceecc
Confidence            46789999999999877777765     357999999 66999999999988752           13566666544322


Q ss_pred             ccccccCCCccEEEEeccccCcc--------C---------------HHHHHHHHHHhcC-CCeEEEEEEEEcC---hhH
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEH--------L---------------LEPLLQTIFALSG-PKTTILLGYEIRS---TSV  189 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~--------~---------------~~~ll~~~~~~l~-~~g~~~l~~~~r~---~~~  189 (222)
                      +-......+||+||+|+|+-...        .               --.++..+.+.|+ |+|++.+..+..-   ...
T Consensus       289 d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~  368 (542)
T 3lkd_A          289 DWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNA  368 (542)
T ss_dssp             CSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTH
T ss_pred             cccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCch
Confidence            10112357899999999874210        0               1137888889999 9999988776421   122


Q ss_pred             HHHHHHHHhcCCeE
Q 027530          190 HEQMLQMWKSNFNV  203 (222)
Q Consensus       190 ~~~f~~~~~~~~~v  203 (222)
                      ...+.+.+-+...+
T Consensus       369 ~~~iRk~Lle~~~l  382 (542)
T 3lkd_A          369 EGTIRKALLEEGAI  382 (542)
T ss_dssp             HHHHHHHHHHTTCE
T ss_pred             hHHHHHHHHhCCce
Confidence            34566655444433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.84  E-value=1.2e-08  Score=91.00  Aligned_cols=112  Identities=10%  Similarity=-0.161  Sum_probs=77.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--------------------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--------------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      .++.+|||.+||+|.+.+.+++.                    ..+++|+|+ +.+++.|+.|+..++....        
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~--------  239 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN--------  239 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB--------
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc--------
Confidence            35779999999999888777653                    136999999 6699999999988764200        


Q ss_pred             CCCceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          122 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ....+.+...|.-..  ......+||+|++++|+-....              ...++..+.++|+|||++.+..+.
T Consensus       240 ~~~~~~I~~gDtL~~--~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          240 LDHGGAIRLGNTLGS--DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             GGGTBSEEESCTTSH--HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccccCCeEeCCCccc--ccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            001245555332211  1122468999999998754321              235888889999999999888764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.82  E-value=1.9e-08  Score=82.78  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             CCCCCeEEEeCC------CccHHHHHHHH-hC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEE-EEe
Q 027530           62 KLKGKRVIELGA------GCGVAGFGMAL-LG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA-VEL  131 (222)
Q Consensus        62 ~~~~~~vLelGc------G~G~~~i~la~-~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~-~~~  131 (222)
                      ..++.+||||||      |+|.  ..+++ .+  ++|+++|+++.+            .             ++++ .+.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------------~-------------~v~~~i~g  113 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------------S-------------DADSTLIG  113 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------------C-------------SSSEEEES
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------------C-------------CCEEEEEC
Confidence            346789999999      4465  43443 33  689999995541            1             3566 776


Q ss_pred             ecCCCccccccCCCccEEEEeccccC-----------ccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhc-
Q 027530          132 DWGNEDHIKAVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-  199 (222)
Q Consensus       132 d~~~~~~~~~~~~~fD~Ii~~d~~y~-----------~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~-  199 (222)
                      |+.+..    ..++||+|+++.....           ......+++.+.++|+|||.+++........  ..+.+.++. 
T Consensus       114 D~~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~  187 (290)
T 2xyq_A          114 DCATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHF  187 (290)
T ss_dssp             CGGGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTE
T ss_pred             ccccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHc
Confidence            665322    1368999998632111           1224578999999999999998865433222  455566654 


Q ss_pred             CCe
Q 027530          200 NFN  202 (222)
Q Consensus       200 ~~~  202 (222)
                      +|.
T Consensus       188 GF~  190 (290)
T 2xyq_A          188 SWW  190 (290)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            464

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.78  E-value=1.2e-07  Score=87.09  Aligned_cols=133  Identities=11%  Similarity=-0.009  Sum_probs=84.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHH--HHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLL--KRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g-----~~v~~~D~-~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      .++.+|||.|||+|.+.+.+++..     .+++|+|+ +.+++.|  +.|+..|....         ......+...++.
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh---------Gi~~~~I~~dD~L  390 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS---------SNNAPTITGEDVC  390 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB---------TTBCCEEECCCGG
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc---------CCCcceEEecchh
Confidence            357899999999999999888753     25999999 6699998  77776654321         0111233332222


Q ss_pred             CCccccccCCCccEEEEeccccCcc-----------------------------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          135 NEDHIKAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       135 ~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------------------~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ..  ......+||+||+|+|+....                             ....++..+.++|+|||++.+..+..
T Consensus       391 ~~--~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          391 SL--NPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GC--CGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             cc--cccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            11  112346899999999983310                             12346777888899999998888752


Q ss_pred             Ch----hHHHHHHHHHhcCCeEEEe
Q 027530          186 ST----SVHEQMLQMWKSNFNVKLV  206 (222)
Q Consensus       186 ~~----~~~~~f~~~~~~~~~v~~v  206 (222)
                      --    .....+.+.+-+.+.+..+
T Consensus       469 ~Lf~sg~~~kkLRk~LLe~~~I~aI  493 (878)
T 3s1s_A          469 YLTAQGNESKAFREFLVGNFGLEHI  493 (878)
T ss_dssp             HHHCCSHHHHHHHHHHTTTTCEEEE
T ss_pred             HhccCChHHHHHHHHHHhCCCeEEE
Confidence            22    1245666666555554433

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.78  E-value=1.1e-08  Score=82.81  Aligned_cols=85  Identities=18%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC-CCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN-LLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+|||+|||+|..++.+|..|++|+++|. +.+...+++|++.........     . ...++++...|..+.  +....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~-----~~l~~~i~~~~~D~~~~--L~~~~  162 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG-----GWLQERLQLIHASSLTA--LTDIT  162 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH-----HHHHHHEEEEESCHHHH--STTCS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhh-----hhhhcCEEEEECCHHHH--HHhCc
Confidence            79999999999999999999999999998 568778877775432100000     0 013678887554332  11123


Q ss_pred             CCccEEEEeccccC
Q 027530          144 PPFDYIIGTDVVYA  157 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~  157 (222)
                      .+||+|+..+++..
T Consensus       163 ~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          163 PRPQVVYLDPMFPH  176 (258)
T ss_dssp             SCCSEEEECCCCCC
T ss_pred             ccCCEEEEcCCCCC
Confidence            47999998766543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.76  E-value=1.9e-08  Score=82.39  Aligned_cols=79  Identities=16%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE----EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCN----VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~----v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++.+|||||||+|.++..+++.+.+    |+++|+ +++++.++++.  .               .++++.+.|..+.
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~---------------~~v~~i~~D~~~~  102 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G---------------ELLELHAGDALTF  102 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G---------------GGEEEEESCGGGC
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C---------------CCcEEEECChhcC
Confidence            346789999999999999999998877    999999 56999999883  2               2678888666544


Q ss_pred             ccccccC-C--CccEEEEeccccC
Q 027530          137 DHIKAVA-P--PFDYIIGTDVVYA  157 (222)
Q Consensus       137 ~~~~~~~-~--~fD~Ii~~d~~y~  157 (222)
                      +.....+ .  ..+.||+|.++|-
T Consensus       103 ~~~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          103 DFGSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             CGGGGSCSSSSCCEEEEEECCHHH
T ss_pred             ChhHhcccccCCceEEEEccCccc
Confidence            3211111 1  3457888877643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.76  E-value=4.6e-08  Score=78.82  Aligned_cols=77  Identities=14%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...++.+|||+|||+|.++..+++.+ .+|+++|+ +++++.++++ .                ..++++.+.|..+.+.
T Consensus        28 ~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----------------~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----------------DERLEVINEDASKFPF   90 (249)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----------------CTTEEEECSCTTTCCG
T ss_pred             CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----------------CCCeEEEEcchhhCCh
Confidence            34467899999999999999999996 78999999 5699998876 2                1367888866654432


Q ss_pred             ccccCCCccEEEEecccc
Q 027530          139 IKAVAPPFDYIIGTDVVY  156 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y  156 (222)
                      ... ...| .|+++.+++
T Consensus        91 ~~~-~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           91 CSL-GKEL-KVVGNLPYN  106 (249)
T ss_dssp             GGS-CSSE-EEEEECCTT
T ss_pred             hHc-cCCc-EEEEECchh
Confidence            111 1233 677776654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.73  E-value=3.2e-07  Score=71.40  Aligned_cols=116  Identities=16%  Similarity=0.039  Sum_probs=76.0

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-----
Q 027530           65 GKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-----  137 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----  137 (222)
                      .++|||+|||  .-++.+|+. +.+|+.+|. ++..+.+++|++.++..          ...++++...+..+..     
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~----------~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA----------EGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC----------TTCEEEEEECCCSSBCGGGCB
T ss_pred             CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------CCCceEEEEeCchhhhccccc
Confidence            3799999985  677888876 689999998 66999999999988741          0247888876644320     


Q ss_pred             -------ccc--------c-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE-EcC-hhHHHHHHHHH
Q 027530          138 -------HIK--------A-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE-IRS-TSVHEQMLQMW  197 (222)
Q Consensus       138 -------~~~--------~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~-~r~-~~~~~~f~~~~  197 (222)
                             ..+        . ..++||+|+.-.-.     ....+..+.++|+|||++++-.. .|. .+...+|++..
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~  171 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAP  171 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCC
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHH
Confidence                   011        1 13689999975421     12444445688999998855432 232 23356777654

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.70  E-value=1.7e-08  Score=83.59  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      .++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++              .++++.+.|+.+... 
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--------------~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------------DRVSLFKVSYREADFL   90 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------------TTEEEEECCGGGHHHH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEECCHHHHHHH
Confidence            36789999999999999999987  468999999 669999999988664              378888866654321 


Q ss_pred             ccc-cCCCccEEEEecc
Q 027530          139 IKA-VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-~~~~fD~Ii~~d~  154 (222)
                      ... ...+||.|++...
T Consensus        91 l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           91 LKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHHTTCSCEEEEEEECS
T ss_pred             HHhcCCCCCCEEEEcCc
Confidence            111 1157999997654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.70  E-value=1.1e-08  Score=82.70  Aligned_cols=79  Identities=10%  Similarity=-0.015  Sum_probs=55.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..++.+|||+|||+|.++. ++ .+.+  |+++|+ +++++.+++++..+               .++++.+.|..+...
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~---------------~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG---------------PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG---------------GGEEEECSCGGGCCH
T ss_pred             CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC---------------CceEEEECchhhCCH
Confidence            3467899999999999999 65 4677  999999 66999998876532               267888866654321


Q ss_pred             cccc--CCCccEEEEeccccC
Q 027530          139 IKAV--APPFDYIIGTDVVYA  157 (222)
Q Consensus       139 ~~~~--~~~fD~Ii~~d~~y~  157 (222)
                      ....  ....|.|++|.+++-
T Consensus        82 ~~~~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           82 GELAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHHHTSCEEEEEECCTTT
T ss_pred             HHhhcccCCceEEEECCCCCc
Confidence            1110  124578888877653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.67  E-value=5.2e-08  Score=88.11  Aligned_cols=102  Identities=17%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             CCeEEEeCCCccHHHHHH---HH-hC---------C--EEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEE
Q 027530           65 GKRVIELGAGCGVAGFGM---AL-LG---------C--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA  128 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~l---a~-~g---------~--~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~  128 (222)
                      ++.|||+|||+|.++..+   ++ .+         .  +|+++|.+ .++..++.... |+.            .++|++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~------------~d~VtV  476 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW------------KRRVTI  476 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT------------TTCSEE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC------------CCeEEE
Confidence            468999999999997433   22 23         2  79999984 45554444433 764            367999


Q ss_pred             EEeecCCCccc--cccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEE
Q 027530          129 VELDWGNEDHI--KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       129 ~~~d~~~~~~~--~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      +..+..+....  ....+++|+||+--+-|.  .+.....+..+.+.|+|+|+++
T Consensus       477 I~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          477 IESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             EESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             EeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            99666544220  011579999998655443  3456678888899999999765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.63  E-value=2.4e-07  Score=82.64  Aligned_cols=122  Identities=10%  Similarity=-0.009  Sum_probs=80.2

Q ss_pred             eEEEeCCCccHHHHHHHHh-----------------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEE
Q 027530           67 RVIELGAGCGVAGFGMALL-----------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA  128 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~-----------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~  128 (222)
                      +|||.+||+|.+.+.+++.                 ...++|+|+ +.++..|+.|+..+++.            .++.+
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~------------~~i~i  314 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID------------FNFGK  314 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC------------CBCCS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC------------cccce
Confidence            8999999999777666432                 346999999 66999999999988753            12222


Q ss_pred             EEeecCCCccc-cccCCCccEEEEeccccCcc-----------------------C------HHHHHHHHHHhcCCCeEE
Q 027530          129 VELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH-----------------------L------LEPLLQTIFALSGPKTTI  178 (222)
Q Consensus       129 ~~~d~~~~~~~-~~~~~~fD~Ii~~d~~y~~~-----------------------~------~~~ll~~~~~~l~~~g~~  178 (222)
                      .+   ++.... .....+||+||+|+|+-...                       .      --.++..+.+.|+|||++
T Consensus       315 ~~---gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  391 (544)
T 3khk_A          315 KN---ADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM  391 (544)
T ss_dssp             SS---CCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred             ec---cchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence            22   222111 12346899999999975310                       0      114788888999999998


Q ss_pred             EEEEEE----cChhHHHHHHHHHhcCCeE
Q 027530          179 LLGYEI----RSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       179 ~l~~~~----r~~~~~~~f~~~~~~~~~v  203 (222)
                      .+..+.    +.......+.+.+-+...+
T Consensus       392 aiVlP~g~L~~~~~~~~~iRk~Lle~~~l  420 (544)
T 3khk_A          392 ALLLANGSMSSNTNNEGEIRKTLVEQDLV  420 (544)
T ss_dssp             EEEEETHHHHCCGGGHHHHHHHHHHTTCE
T ss_pred             EEEecchhhhcCcchHHHHHHHHHhCCcH
Confidence            887763    2212345566655443333

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.49  E-value=6.9e-08  Score=78.57  Aligned_cols=121  Identities=8%  Similarity=-0.017  Sum_probs=91.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-cccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-DHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~  140 (222)
                      +.+..+||+-+|+|.+|+.+.+.+.+++++|. ++.++.+++|++..               .++++...|.... ....
T Consensus        90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---------------~~~~V~~~D~~~~L~~l~  154 (283)
T 2oo3_A           90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---------------KKVYVNHTDGVSKLNALL  154 (283)
T ss_dssp             HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---------------SCEEEECSCHHHHHHHHC
T ss_pred             hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---------------CcEEEEeCcHHHHHHHhc
Confidence            45678999999999999999997778999998 77999999988631               3677777553211 1111


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHh--cCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~--l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      ....+||+|+.-+++-.......+++.+.+.  +.|+|++++=++.........|.+.++
T Consensus       155 ~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~  214 (283)
T 2oo3_A          155 PPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  214 (283)
T ss_dssp             SCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence            2345799999766654356788888888774  679999999999877776778888774

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.41  E-value=1.1e-06  Score=64.29  Aligned_cols=54  Identities=22%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             ccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHH
Q 027530           34 LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLP   99 (222)
Q Consensus        34 ~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G-~~~i~la~-~g~~v~~~D~-~~~l~   99 (222)
                      .+.+.|+   .|++|+.++.         ..+.+|||+|||.| .++..++. .|..|++||+ +.+++
T Consensus        17 ~~~~m~e---~LaeYI~~~~---------~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           17 RGSHMWN---DLAVYIIRCS---------GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCHHHH---HHHHHHHHHS---------CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             chhhHHH---HHHHHHHhcC---------CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            3445543   6899998762         23569999999999 59999997 8999999998 55666

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.37  E-value=8.1e-07  Score=71.84  Aligned_cols=143  Identities=14%  Similarity=0.030  Sum_probs=83.5

Q ss_pred             ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecch-hhHHHHHHHHHHh
Q 027530           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWN  108 (222)
Q Consensus        32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~~-~~l~~~~~n~~~n  108 (222)
                      ..+|...=.++..|.+.....        ...++.+|||||||+|-.+..++.. ++ +|+++|+. ++......     
T Consensus        50 ~~~~~YrSRaA~KL~ei~ek~--------~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-----  116 (277)
T 3evf_A           50 VDTGVAVSRGTAKLRWFHERG--------YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-----  116 (277)
T ss_dssp             CSSCBCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-----
T ss_pred             ccCCCccccHHHHHHHHHHhC--------CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-----
Confidence            345666667888888888763        2335678999999999999988865 55 58888863 22000000     


Q ss_pred             hccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-----H--HHHHHHHHHhcCCC-eEEEE
Q 027530          109 TSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----L--EPLLQTIFALSGPK-TTILL  180 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-----~--~~ll~~~~~~l~~~-g~~~l  180 (222)
                      ..          ....++.....+.   +.......+||+|++. ...+...     .  -.+++.+.++|+|| |.+++
T Consensus       117 ~~----------~~g~~ii~~~~~~---dv~~l~~~~~DlVlsD-~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          117 VQ----------SLGWNIITFKDKT---DIHRLEPVKCDTLLCD-IGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             CC----------BTTGGGEEEECSC---CTTTSCCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cC----------cCCCCeEEEeccc---eehhcCCCCccEEEec-CccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            00          0011223233221   2222346789999984 4323111     1  13567788899999 98877


Q ss_pred             EEEEc-ChhHHHHHHHHHhcCCe
Q 027530          181 GYEIR-STSVHEQMLQMWKSNFN  202 (222)
Q Consensus       181 ~~~~r-~~~~~~~f~~~~~~~~~  202 (222)
                      -. .+ .......|++.++..|.
T Consensus       183 KV-f~pyg~~~~~l~~~lk~~F~  204 (277)
T 3evf_A          183 KV-LAPYMPDVLEKLELLQRRFG  204 (277)
T ss_dssp             EE-SCTTSHHHHHHHHHHHHHHC
T ss_pred             Ee-cCCCCccHHHHHHHHHHhcC
Confidence            32 34 13335677777766553

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.33  E-value=5.6e-06  Score=70.49  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=73.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--------------C-----CEEEEecchh-----hHHHH---HHHHHH-hhccccccC
Q 027530           65 GKRVIELGAGCGVAGFGMALL--------------G-----CNVITTDQIE-----VLPLL---KRNVEW-NTSRISQMN  116 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--------------g-----~~v~~~D~~~-----~l~~~---~~n~~~-n~~~~~~~~  116 (222)
                      ..+|+||||++|..++.+...              +     .+|++.|++.     ....+   .+.+.. ++.      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence            468999999999998877654              1     2588999852     22222   222211 110      


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHH----------------------------------
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE----------------------------------  162 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~----------------------------------  162 (222)
                            ...--+....-+.+....++.+++|+|+++-+++|.+..+                                  
T Consensus       127 ------~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf  200 (384)
T 2efj_A          127 ------KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQF  200 (384)
T ss_dssp             ------CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHH
T ss_pred             ------CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHH
Confidence                  0122445555566666666789999999999999843321                                  


Q ss_pred             -----HHHHHHHHhcCCCeEEEEEEEEcChh
Q 027530          163 -----PLLQTIFALSGPKTTILLGYEIRSTS  188 (222)
Q Consensus       163 -----~ll~~~~~~l~~~g~~~l~~~~r~~~  188 (222)
                           .+++...+.|+|||++++....|...
T Consensus       201 ~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          201 TKDFTTFLRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence                 23666688899999999998876553

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.31  E-value=2.1e-06  Score=72.97  Aligned_cols=122  Identities=13%  Similarity=-0.067  Sum_probs=75.2

Q ss_pred             CCeEEEeCCCccHHHHHHHH--------h----C-----CEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           65 GKRVIELGAGCGVAGFGMAL--------L----G-----CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~--------~----g-----~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      ..+|+|||||+|..++.+..        .    +     .+|.+.|++. ....+=+++...........-.. .....-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~-~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLA-ADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC----CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhcc-ccCCCc
Confidence            46899999999998887732        1    1     2588999854 55544343332110000000000 000011


Q ss_pred             EEEEeecCCCccccccCCCccEEEEeccccCcc--------------------------------------CHHHHHHHH
Q 027530          127 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLLQTI  168 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------------------------~~~~ll~~~  168 (222)
                      .+....-+.+....+++++||+|+++-+++|.+                                      ++..+++..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            233434455555556789999999999999854                                      334468888


Q ss_pred             HHhcCCCeEEEEEEEEcCh
Q 027530          169 FALSGPKTTILLGYEIRST  187 (222)
Q Consensus       169 ~~~l~~~g~~~l~~~~r~~  187 (222)
                      .+.|+|||++++....|..
T Consensus       212 a~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHHEEEEEEEEEEEEECCC
T ss_pred             HHHhCCCCEEEEEEecCCC
Confidence            9999999999999887754

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.29  E-value=2.3e-06  Score=69.12  Aligned_cols=136  Identities=11%  Similarity=0.003  Sum_probs=73.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-------C-------CEEEEecc-h---hhHH-----------HHHHHHHHhhccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-------G-------CNVITTDQ-I---EVLP-----------LLKRNVEWNTSRISQ  114 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-------g-------~~v~~~D~-~---~~l~-----------~~~~n~~~n~~~~~~  114 (222)
                      +..+|||+|+|+|+..+.+++.       +       .+++++|. +   +.+.           .++++++.-...+..
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3468999999999988876643       2       26899996 5   3333           344443320000000


Q ss_pred             cC-CCCCCCCCceEEEEeecCCCccccccC----CCccEEEEecccc---CccC-HHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          115 MN-PGSGNLLGSIQAVELDWGNEDHIKAVA----PPFDYIIGTDVVY---AEHL-LEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       115 ~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~----~~fD~Ii~~d~~y---~~~~-~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .. ..-.....++++...|..+.  ++...    ..||+|+.. .+-   +++. ...+++.+.++|+|||++.. +. .
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ys-a  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FT-S  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SC-C
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEE-Ee-C
Confidence            00 00000113455565444321  22222    379999973 321   1221 35699999999999998763 22 1


Q ss_pred             ChhHHHHHHHHH-hcCCeEEEecC
Q 027530          186 STSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       186 ~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      ..    .+.+.+ ..+|.++.++.
T Consensus       215 a~----~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          215 AG----FVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             BH----HHHHHHHHHTEEEEEECC
T ss_pred             CH----HHHHHHHHCCCEEEeCCC
Confidence            11    233333 45899987655

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.13  E-value=1.6e-05  Score=67.06  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ..+|.+||||||.+|-.+..+++.|++|+++|..++-..+    ..               ..+|++.+.|...   ...
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l----~~---------------~~~V~~~~~d~~~---~~~  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL----MD---------------TGQVTWLREDGFK---FRP  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH----HT---------------TTCEEEECSCTTT---CCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh----cc---------------CCCeEEEeCcccc---ccC
Confidence            3478999999999999999999999999999975433322    11               2467777755332   233


Q ss_pred             cCCCccEEEEecccc
Q 027530          142 VAPPFDYIIGTDVVY  156 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y  156 (222)
                      ...+||+|++ |+..
T Consensus       267 ~~~~~D~vvs-Dm~~  280 (375)
T 4auk_A          267 TRSNISWMVC-DMVE  280 (375)
T ss_dssp             CSSCEEEEEE-CCSS
T ss_pred             CCCCcCEEEE-cCCC
Confidence            3568999996 5543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.11  E-value=5.9e-06  Score=68.02  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (222)
                      .+|..|||++||+|..+++++++|.+++++|+ +++++.+++|+...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999 66999999998754

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.10  E-value=4.2e-05  Score=64.61  Aligned_cols=139  Identities=16%  Similarity=0.158  Sum_probs=89.4

Q ss_pred             chHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      .+|.+.+..|.           ..+|.+|||++||.|-=++.++..+.  .|++.|+ +.-+..+++|+++.+....   
T Consensus       135 ~aS~l~~~~L~-----------~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~---  200 (359)
T 4fzv_A          135 AASLLPVLALG-----------LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEI---  200 (359)
T ss_dssp             GGGHHHHHHHC-----------CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTT---
T ss_pred             HHHHHHHHHhC-----------CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhh---
Confidence            46666666653           34788999999999988888887765  5999999 5588999999998764210   


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEecc-------ccC-cc----------------CHHHHHHHHHHhc
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-------VYA-EH----------------LLEPLLQTIFALS  172 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~-------~y~-~~----------------~~~~ll~~~~~~l  172 (222)
                          ....++.+...|.....  ....+.||.|+.-.+       +.. ..                ....++....+++
T Consensus       201 ----~~~~~v~v~~~D~~~~~--~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~l  274 (359)
T 4fzv_A          201 ----RDGNQVRVTSWDGRKWG--ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLAT  274 (359)
T ss_dssp             ----TTSSSEEEECCCGGGHH--HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTE
T ss_pred             ----ccCCceEEEeCchhhcc--hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcC
Confidence                01236677664433221  123578999986322       111 00                1234777778889


Q ss_pred             CCCeEEEEEEE----EcChhHHHHHHHHHh
Q 027530          173 GPKTTILLGYE----IRSTSVHEQMLQMWK  198 (222)
Q Consensus       173 ~~~g~~~l~~~----~r~~~~~~~f~~~~~  198 (222)
                      ||||+++.++=    .-+..+...|++...
T Consensus       275 kpGG~LVYsTCSl~~~ENE~vV~~~L~~~~  304 (359)
T 4fzv_A          275 KPGGHVVYSTCSLSHLQNEYVVQGAIELLA  304 (359)
T ss_dssp             EEEEEEEEEESCCCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCchhhCHHHHHHHHHhCC
Confidence            99998765541    233345677776653

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.09  E-value=4.6e-06  Score=70.39  Aligned_cols=110  Identities=11%  Similarity=0.025  Sum_probs=76.3

Q ss_pred             CeEEEeCCCccHHHHHHHHh------------C------CEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           66 KRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~------------g------~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      .+|+||||++|..++.+...            +      .+|++.|++. ....+-+++.... .           ..+.
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~-----------~~~~  120 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-D-----------VDGV  120 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-S-----------CTTC
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-c-----------cCCC
Confidence            57999999999777665543            2      2589999954 6776665544211 0           0022


Q ss_pred             EEEEeecCCCccccccCCCccEEEEeccccCccC---------------------------------HHHHHHHHHHhcC
Q 027530          127 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------LEPLLQTIFALSG  173 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~---------------------------------~~~ll~~~~~~l~  173 (222)
                      .+....-+.+.....+.+++|+|+++-.++|.+.                                 +..+++...+.|+
T Consensus       121 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~  200 (359)
T 1m6e_X          121 CFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             EEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             EEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444444666666667899999999999988432                                 2345888899999


Q ss_pred             CCeEEEEEEEEcCh
Q 027530          174 PKTTILLGYEIRST  187 (222)
Q Consensus       174 ~~g~~~l~~~~r~~  187 (222)
                      |||++++....|..
T Consensus       201 pGG~mvl~~~gr~~  214 (359)
T 1m6e_X          201 PGGRMVLTILGRRS  214 (359)
T ss_dssp             TTCEEEEEEEECSS
T ss_pred             CCceEEEEEecCCC
Confidence            99999999887754

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.99  E-value=6.1e-06  Score=66.84  Aligned_cols=141  Identities=13%  Similarity=0.003  Sum_probs=80.3

Q ss_pred             cccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecch-hhHHHHHHHHHHhhcc
Q 027530           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSR  111 (222)
Q Consensus        35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g~-~v~~~D~~-~~l~~~~~n~~~n~~~  111 (222)
                      |...=.++..|.+.....        ...++.+|||||||+|-.+.++++ .++ +|+++|+. ++....... .     
T Consensus        69 g~YrSRAAfKL~ei~eK~--------~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~-----  134 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG--------YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-T-----  134 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-C-----
T ss_pred             CCEecHHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-c-----
Confidence            555556788888877654        234667999999999999998885 455 58899973 221111000 0     


Q ss_pred             ccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-------HHHHHHHHHHhcCCC--eEEEEEE
Q 027530          112 ISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPK--TTILLGY  182 (222)
Q Consensus       112 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------~~~ll~~~~~~l~~~--g~~~l~~  182 (222)
                               ....++....   .+.+.......++|+|++. .-.+...       .-.++..+.++|+||  |.+++-.
T Consensus       135 ---------~~g~~ii~~~---~~~dv~~l~~~~~DvVLSD-mApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv  201 (282)
T 3gcz_A          135 ---------TLGWNLIRFK---DKTDVFNMEVIPGDTLLCD-IGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV  201 (282)
T ss_dssp             ---------BTTGGGEEEE---CSCCGGGSCCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             ---------cCCCceEEee---CCcchhhcCCCCcCEEEec-CccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence                     0011222221   1111122345789999974 3333211       113577778889999  9876633


Q ss_pred             EEcChhHHHHHHHHHhcCCe
Q 027530          183 EIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       183 ~~r~~~~~~~f~~~~~~~~~  202 (222)
                      -.-.......|++.++..|.
T Consensus       202 F~pyg~~~~~l~~~lk~~F~  221 (282)
T 3gcz_A          202 LCPYTPLIMEELSRLQLKHG  221 (282)
T ss_dssp             SCCCSHHHHHHHHHHHHHHC
T ss_pred             ecCCCccHHHHHHHHHHhcC
Confidence            22113335677777766553

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.95  E-value=0.00014  Score=59.69  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=83.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      -++||=||-|.|...-.+++. + .+|+.+|+ +++++.+++-+.. +.-..         ...++++...|....-  .
T Consensus        84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~---------~dpRv~v~~~Dg~~~l--~  152 (294)
T 3o4f_A           84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSY---------DDPRFKLVIDDGVNFV--N  152 (294)
T ss_dssp             CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG---------GCTTEEEEESCTTTTT--S
T ss_pred             CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccccc---------CCCcEEEEechHHHHH--h
Confidence            479999999999988888875 3 47999999 6699999887643 22111         2357888887765443  3


Q ss_pred             ccCCCccEEEEe--ccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~--d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~~  202 (222)
                      ...++||+||.-  |+.....  .-..+++.+++.|+|+|++..-...-  .........+.+++.|.
T Consensus       153 ~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~  220 (294)
T 3o4f_A          153 QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS  220 (294)
T ss_dssp             CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCS
T ss_pred             hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCC
Confidence            346789999953  2221111  12468999999999999877644321  22233444555555453

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.94  E-value=0.00026  Score=62.91  Aligned_cols=126  Identities=13%  Similarity=0.037  Sum_probs=77.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      ..+.+|+|-.||+|-.-+.+...               ...++|.|+ +.+...|+.|+...+..             ..
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-------------~~  282 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-------------YP  282 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-------------CC
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-------------cc
Confidence            46679999999999766655432               235999999 66999999999888743             11


Q ss_pred             EEEEeecCCCccc----cccCCCccEEEEeccccCcc----------------CHHHHHHHHHHhcC-------CCeEEE
Q 027530          127 QAVELDWGNEDHI----KAVAPPFDYIIGTDVVYAEH----------------LLEPLLQTIFALSG-------PKTTIL  179 (222)
Q Consensus       127 ~~~~~d~~~~~~~----~~~~~~fD~Ii~~d~~y~~~----------------~~~~ll~~~~~~l~-------~~g~~~  179 (222)
                      .+..   ++....    .....+||+||+|+|+-...                .-..++..+.+.|+       |||++.
T Consensus       283 ~I~~---~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~a  359 (530)
T 3ufb_A          283 RIDP---ENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAA  359 (530)
T ss_dssp             EEEC---SCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEE
T ss_pred             cccc---cccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEE
Confidence            2222   332111    11235799999999983211                11235666666665       799998


Q ss_pred             EEEEEc---ChhHHHHHHHHHhcCCeEE
Q 027530          180 LGYEIR---STSVHEQMLQMWKSNFNVK  204 (222)
Q Consensus       180 l~~~~r---~~~~~~~f~~~~~~~~~v~  204 (222)
                      +..+.-   .......+.+.+-+.+.++
T Consensus       360 vVlP~g~Lf~~~~~~~iRk~Lle~~~l~  387 (530)
T 3ufb_A          360 VVVPNGTLFSDGISARIKEELLKNFNLH  387 (530)
T ss_dssp             EEEEHHHHHCCTHHHHHHHHHHHHSEEE
T ss_pred             EEecchhhhccchHHHHHHHHhhcCEEE
Confidence            877641   1122344555554444443

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.86  E-value=2.8e-05  Score=62.68  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      .+|..|||.+||+|..++++.++|.+++++|+ +++++.+++|++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999 669999999998765

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.81  E-value=0.00012  Score=59.74  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             cccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecchh-hHHHHHHHHHHhh
Q 027530           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNT  109 (222)
Q Consensus        33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~~~-~l~~~~~n~~~n~  109 (222)
                      .+|...=.++.-|.+.....        ...++++||||||++|-.+..+++. ++ .|+++|+.. +...... ..   
T Consensus        58 ~~g~yrSRaa~KL~ei~ek~--------l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~---  125 (300)
T 3eld_A           58 DVGISVSRGAAKIRWLHERG--------YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQ---  125 (300)
T ss_dssp             SSCCCSSTTHHHHHHHHHHT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC---
T ss_pred             cCCCccchHHHHHHHHHHhC--------CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cc---
Confidence            34556666788888887663        2347889999999999999999975 55 588999732 2100000 00   


Q ss_pred             ccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-------HHHHHHHHHHhcCCC-eEEEEE
Q 027530          110 SRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                                 ....++....   ...+.......++|+|++ |.--+...       ...|+..+.++|+|| |.+++-
T Consensus       126 -----------~~~~~iv~~~---~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          126 -----------TLGWNIVKFK---DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             -----------BTTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             -----------ccCCceEEee---cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence                       0011222111   111111223578999998 44433222       124677778889999 987664


Q ss_pred             EEEc-ChhHHHHHHHHHhcCCe
Q 027530          182 YEIR-STSVHEQMLQMWKSNFN  202 (222)
Q Consensus       182 ~~~r-~~~~~~~f~~~~~~~~~  202 (222)
                      . .+ .......+++.++..|.
T Consensus       191 v-F~~yG~~~~~ll~~lk~~F~  211 (300)
T 3eld_A          191 V-LAPYHPDVIEKLERLQLRFG  211 (300)
T ss_dssp             E-SSTTSHHHHHHHHHHHHHHC
T ss_pred             e-ccccCccHHHHHHHHHHhCC
Confidence            3 33 13335667777766553

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.79  E-value=5.2e-05  Score=61.91  Aligned_cols=104  Identities=11%  Similarity=0.005  Sum_probs=71.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-------CCEEEEecc-h--------------------------hhHHHHHHHHHHhhc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-------GCNVITTDQ-I--------------------------EVLPLLKRNVEWNTS  110 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-------g~~v~~~D~-~--------------------------~~l~~~~~n~~~n~~  110 (222)
                      .++|||+|+..|..++.++..       +.+|+++|. +                          ..++.+++|+++.++
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            358999999999988877643       457999984 1                          146678899988764


Q ss_pred             cccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .           ..+++++.++..+.  ++. ...+||+|..---.|  ......+..+..+|+|||.+++-..
T Consensus       187 ~-----------~~~I~li~Gda~et--L~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          187 L-----------DEQVRFLPGWFKDT--LPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             C-----------STTEEEEESCHHHH--STTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             C-----------cCceEEEEeCHHHH--HhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            1           25789988655322  221 246899998542122  2234678888999999998776443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.59  E-value=0.00021  Score=57.12  Aligned_cols=142  Identities=12%  Similarity=-0.032  Sum_probs=73.4

Q ss_pred             cccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      .+|...=.++..|.+.-...        ...+|.+||||||+.|-.+.+++++  ...|.+.++ .+. .       ...
T Consensus        50 ~~g~yRSRAayKL~EIdeK~--------likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P  113 (269)
T 2px2_A           50 VGGHPVSRGTAKLRWLVERR--------FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEP  113 (269)
T ss_dssp             CCSCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCC
T ss_pred             cCCCcccHHHHHHHHHHHcC--------CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCC
Confidence            34444445555665554432        2346889999999999999999987  223444443 110 0       000


Q ss_pred             ccccccCCCCCCCCCceEEEEe-ecCCCccccccCCCccEEEEeccccCccC----HH---HHHHHHHHhcCCCe-EEEE
Q 027530          110 SRISQMNPGSGNLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHL----LE---PLLQTIFALSGPKT-TILL  180 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~----~~---~ll~~~~~~l~~~g-~~~l  180 (222)
                           ..+.+ ..-.-+.+.+. |..+   .  ...++|+|+|- .--....    ..   ..+..+.++|+||| .+++
T Consensus       114 -----~~~~~-~Gv~~i~~~~G~Df~~---~--~~~~~DvVLSD-MAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          114 -----MLMQS-YGWNIVTMKSGVDVFY---K--PSEISDTLLCD-IGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             -----CCCCS-TTGGGEEEECSCCGGG---S--CCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             -----CcccC-CCceEEEeeccCCccC---C--CCCCCCEEEeC-CCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence                 00000 00012344433 4432   1  24589999963 3222211    11   14566667899999 7665


Q ss_pred             EEEEcChhHHHHHHHHHhcCCe
Q 027530          181 GYEIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       181 ~~~~r~~~~~~~f~~~~~~~~~  202 (222)
                      -.-.-....+.++++.++..|.
T Consensus       182 KVFqg~~~~~~~~l~~lk~~F~  203 (269)
T 2px2_A          182 KILCPYMPKVIEKLESLQRRFG  203 (269)
T ss_dssp             EESCTTSHHHHHHHHHHHHHHC
T ss_pred             EECCCCchHHHHHHHHHHHHcC
Confidence            3322211334556667766553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.47  E-value=0.0001  Score=59.87  Aligned_cols=72  Identities=19%  Similarity=0.159  Sum_probs=50.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-c
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-K  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  140 (222)
                      .++..+||.+||.|--+..+++.+.+|+++|. +++++.+++ ++.                .++++++.++.+.... .
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----------------~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----------------PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----------------TTEEEEESCGGGHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----------------CCEEEEECCcchHHHHHH
Confidence            36789999999999999999988889999999 669998887 532                2566666555433211 1


Q ss_pred             c-cCCCccEEEE
Q 027530          141 A-VAPPFDYIIG  151 (222)
Q Consensus       141 ~-~~~~fD~Ii~  151 (222)
                      . ...++|.|++
T Consensus        84 ~~g~~~vDgIL~   95 (285)
T 1wg8_A           84 ALGVERVDGILA   95 (285)
T ss_dssp             HTTCSCEEEEEE
T ss_pred             HcCCCCcCEEEe
Confidence            1 1145777765

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.42  E-value=0.00019  Score=60.73  Aligned_cols=131  Identities=15%  Similarity=0.071  Sum_probs=78.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNEDH-I  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  139 (222)
                      +.++||=||-|.|...-.+.+... +|+.+|+ +++++.+++-+.. ++....      ....+++++...|....-. .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d------~pr~~rv~vii~Da~~fl~~~  278 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLD------NLKGDCYQVLIEDCIPVLKRY  278 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCS------SSEETTEEEEESCHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhc------cccccceeeehHHHHHHHHhh
Confidence            357999999999998888877654 6999999 6699999886432 111000      0112456776644322111 1


Q ss_pred             cccCCCccEEEEecccc---Cc--------cCHHHHHHHHHHhcCCCeEEEEEEEE-cChhHHHHHHHHHhcCC
Q 027530          140 KAVAPPFDYIIGTDVVY---AE--------HLLEPLLQTIFALSGPKTTILLGYEI-RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y---~~--------~~~~~ll~~~~~~l~~~g~~~l~~~~-r~~~~~~~f~~~~~~~~  201 (222)
                      .....+||+||.- +.-   ..        -.-..+++.+++.|+|+|+++.-... -.......+.+.+++-|
T Consensus       279 ~~~~~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF  351 (381)
T 3c6k_A          279 AKEGREFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY  351 (381)
T ss_dssp             HHHTCCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSS
T ss_pred             hhccCceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhC
Confidence            1235689999964 211   10        01246788999999999987654332 22233455666666544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.38  E-value=0.00056  Score=55.67  Aligned_cols=138  Identities=14%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             ccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hh-h-HHHHHHHHH
Q 027530           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IE-V-LPLLKRNVE  106 (222)
Q Consensus        32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g~-~v~~~D~-~~-~-l~~~~~n~~  106 (222)
                      ..+|..+=.++..|.+.....        ....+.+||||||++|-.+.+++. .|+ +|+++|+ .. - -....+.+.
T Consensus        70 ~~~g~y~SR~~~KL~ei~~~~--------~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~  141 (321)
T 3lkz_A           70 VTGGHPVSRGTAKLRWLVERR--------FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG  141 (321)
T ss_dssp             CSSCCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT
T ss_pred             CcCCCccchHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC
Confidence            345666666777777776653        234667999999999999996664 566 4999997 22 1 000000011


Q ss_pred             HhhccccccCCCCCCCCCceEEEEe-ecCCCccccccCCCccEEEEeccccCccCH-------HHHHHHHHHhcCCC-eE
Q 027530          107 WNTSRISQMNPGSGNLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-------EPLLQTIFALSGPK-TT  177 (222)
Q Consensus       107 ~n~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~-------~~ll~~~~~~l~~~-g~  177 (222)
                      -                ..|.+... |.   ..++  ..++|+|++ |+--.....       -..+..+.+.|+++ |.
T Consensus       142 w----------------~lV~~~~~~Dv---~~l~--~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~  199 (321)
T 3lkz_A          142 W----------------NIVTMKSGVDV---FYRP--SECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPRE  199 (321)
T ss_dssp             G----------------GGEEEECSCCT---TSSC--CCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             C----------------cceEEEeccCH---hhCC--CCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCc
Confidence            0                12444442 22   2222  267999885 555332221       11455556778887 66


Q ss_pred             EEEEEEEcCh--hHHHHHHHHHhcCC
Q 027530          178 ILLGYEIRST--SVHEQMLQMWKSNF  201 (222)
Q Consensus       178 ~~l~~~~r~~--~~~~~f~~~~~~~~  201 (222)
                      +++  +.=.+  ....++++.++..|
T Consensus       200 f~~--KVl~pY~~~v~e~l~~lq~~f  223 (321)
T 3lkz_A          200 FCV--KVLCPYMPKVIEKMELLQRRY  223 (321)
T ss_dssp             EEE--EESCTTSHHHHHHHHHHHHHH
T ss_pred             EEE--EEcCCCChHHHHHHHHHHHHh
Confidence            555  33333  33446666665544

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.27  E-value=0.00043  Score=58.79  Aligned_cols=71  Identities=23%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc--
Q 027530           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA--  141 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  141 (222)
                      .+|+||.||+|-+++.+.+.|.+ |.++|+ +.+++..+.|..                  ...+...|..+......  
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------------------~~~~~~~DI~~~~~~~~~~   64 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------------RSLHVQEDVSLLNAEIIKG   64 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------------------TSEEECCCGGGCCHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------------------CCceEecChhhcCHHHHHh
Confidence            47999999999999999999997 669999 558777777743                  22444444443321111  


Q ss_pred             ---cCCCccEEEEecc
Q 027530          142 ---VAPPFDYIIGTDV  154 (222)
Q Consensus       142 ---~~~~fD~Ii~~d~  154 (222)
                         ....+|+|+++++
T Consensus        65 ~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A           65 FFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             HHCSCCCCCEEEECCC
T ss_pred             hcccCCCeeEEEecCC
Confidence               2467999998866

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.20  E-value=0.0049  Score=52.22  Aligned_cols=138  Identities=16%  Similarity=0.128  Sum_probs=86.7

Q ss_pred             eEEEEeeCCC-CccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHH
Q 027530           21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLP   99 (222)
Q Consensus        21 ~~~~i~q~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~~~l~   99 (222)
                      +.++++..|. .......-|+++-   +||..+..      ....+.+||-|+.+.|.+++.++..+. ...+|.--...
T Consensus         3 ~~~~l~r~p~~~~~~~l~a~da~d---~~ll~~~~------~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~   72 (375)
T 4dcm_A            3 RSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLD------DTEIRGPVLILNDAFGALSCALAEHKP-YSIGDSYISEL   72 (375)
T ss_dssp             TTCCCCCSSCCCSSCSCCSCCHHH---HHHHHTTT------TCCCCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHH
T ss_pred             CceeEEECCCCCCCCCCCccchHH---HHHHHhhh------hccCCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHH
Confidence            4566677776 6677889999875   33443321      112456899999999999998876544 23356322446


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          100 LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .++.|++.|++.           ...+++..  ..     ......||+|+.--+ -........+..+...|++++.++
T Consensus        73 ~~~~n~~~~~~~-----------~~~~~~~~--~~-----~~~~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~  133 (375)
T 4dcm_A           73 ATRENLRLNGID-----------ESSVKFLD--ST-----ADYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRII  133 (375)
T ss_dssp             HHHHHHHHTTCC-----------GGGSEEEE--TT-----SCCCSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEE
T ss_pred             HHHHHHHHcCCC-----------ccceEecc--cc-----cccccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEE
Confidence            778999999864           22345432  11     123568999885322 112334445666667788999998


Q ss_pred             EEEEEcCh
Q 027530          180 LGYEIRST  187 (222)
Q Consensus       180 l~~~~r~~  187 (222)
                      ++...+..
T Consensus       134 ~~g~~~~~  141 (375)
T 4dcm_A          134 AGAKARDI  141 (375)
T ss_dssp             EEEEGGGC
T ss_pred             EEecccch
Confidence            88776544

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.20  E-value=0.00019  Score=60.18  Aligned_cols=41  Identities=24%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CE-EEEecc-hhhHHHHHHHHH
Q 027530           66 KRVIELGAGCGVAGFGMALLG--CN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g--~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      .+||||.||+|.+++.+.+.|  ++ |.++|. +.+++..+.|..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~   47 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP   47 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc
Confidence            479999999999999999999  54 889999 568888888864

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.12  E-value=0.0015  Score=54.45  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (222)
                      +....+.+++||.||+|-+++.+.+.|++ |.++|. +.+++..+.|..
T Consensus         6 ~~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~   54 (327)
T 2c7p_A            6 DKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG   54 (327)
T ss_dssp             SCTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS
T ss_pred             ccccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC
Confidence            34456789999999999999999999997 778999 558888888763

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.02  E-value=0.03  Score=44.28  Aligned_cols=136  Identities=13%  Similarity=0.033  Sum_probs=74.7

Q ss_pred             cccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hhhH--HHHHHHHHHhh
Q 027530           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVL--PLLKRNVEWNT  109 (222)
Q Consensus        35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g~-~v~~~D~-~~~l--~~~~~n~~~n~  109 (222)
                      |...=.++..|.+.....        ...++.+||||||++|-.+.+++. .|+ +|+++|+ ..-.  ....+   .-+
T Consensus        57 g~yrSRa~~KL~ei~ek~--------~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~---s~g  125 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN--------MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMS---TYG  125 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC---CTT
T ss_pred             CCccchHHHHHHHHHHhc--------CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhh---hcC
Confidence            444455666666666543        234677999999999999996665 466 5999997 3211  00000   001


Q ss_pred             ccccccCCCCCCCCCceEEEEe-ecCCCccccccCCCccEEEEeccccCccCH----HH---HHHHHHHhcCCCeEEEEE
Q 027530          110 SRISQMNPGSGNLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----EP---LLQTIFALSGPKTTILLG  181 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~----~~---ll~~~~~~l~~~g~~~l~  181 (222)
                                   -..+++.+. |.   ...  ...++|+|+|. +--.....    ..   .+..+.+.|++ |.+++-
T Consensus       126 -------------wn~v~fk~gvDv---~~~--~~~~~DtllcD-IgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          126 -------------WNIVKLMSGKDV---FYL--PPEKCDTLLCD-IGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             -------------TTSEEEECSCCG---GGC--CCCCCSEEEEC-CCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             -------------cCceEEEeccce---eec--CCccccEEEEe-cCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence                         135677763 32   222  23679999963 33222221    11   45555677888 555542


Q ss_pred             EEEcChhHHHHHHHHHhcCC
Q 027530          182 YEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       182 ~~~r~~~~~~~f~~~~~~~~  201 (222)
                      .-.-+.....++++.++..|
T Consensus       186 Vl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          186 VLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             ESCCCSHHHHHHHHHHHHHH
T ss_pred             EccCCChhHHHHHHHHHHHh
Confidence            22222222346666665433

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.94  E-value=0.011  Score=48.28  Aligned_cols=123  Identities=18%  Similarity=0.158  Sum_probs=69.7

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCc----cHHHHHHHHh---CCEEEEecchhhHHHHHHHHHHhhcccccc
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC----GVAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQM  115 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~----G~~~i~la~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~  115 (222)
                      ..|.+||....      ...-.|.+|||||||+    ---+..+.+.   |+.|+++|+.++..         .      
T Consensus        94 tqlcqyl~~~~------~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s---------d------  152 (344)
T 3r24_A           94 TQLCQYLNTLT------LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS---------D------  152 (344)
T ss_dssp             HHHHHHHTTSC------CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC---------S------
T ss_pred             HHHHHHhcccc------EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc---------C------
Confidence            46778884421      2234678999999843    1223444544   45799999855321         0      


Q ss_pred             CCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC------------ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          116 NPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------------EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       116 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~------------~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                              .. .++++|..   .. ....+||+||+- ..-.            ....+..+..+.+.|+|||.+++-..
T Consensus       153 --------a~-~~IqGD~~---~~-~~~~k~DLVISD-MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          153 --------AD-STLIGDCA---TV-HTANKWDLIISD-MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             --------SS-EEEESCGG---GE-EESSCEEEEEEC-CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --------CC-eEEEcccc---cc-ccCCCCCEEEec-CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence                    01 22554432   11 125789999963 2211            11356677778889999999877543


Q ss_pred             EcChhHHHHHHHHHhcCCeE
Q 027530          184 IRSTSVHEQMLQMWKSNFNV  203 (222)
Q Consensus       184 ~r~~~~~~~f~~~~~~~~~v  203 (222)
                      .-..   .+++..+...|..
T Consensus       219 QGsg---~~~L~~lrk~F~~  235 (344)
T 3r24_A          219 EHSW---NADLYKLMGHFSW  235 (344)
T ss_dssp             SSSC---CHHHHHHHTTEEE
T ss_pred             cCCC---HHHHHHHHhhCCe
Confidence            3222   2344445557754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.87  E-value=0.00027  Score=72.98  Aligned_cols=101  Identities=17%  Similarity=0.095  Sum_probs=46.0

Q ss_pred             CCCeEEEeCCCccHHHHH-HHHhC------CEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           64 KGKRVIELGAGCGVAGFG-MALLG------CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~-la~~g------~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..+|||+|+|+|..... +..++      .++++||++ ...+.+++.++.-                .+..  ..|..
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----------------di~~--~~~d~ 1301 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----------------HVTQ--GQWDP 1301 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----------------TEEE--ECCCS
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----------------cccc--ccccc
Confidence            346899999999854332 22222      269999984 4666676665421                1121  11211


Q ss_pred             CccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          136 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..........||+||++.+++........++.+.++|+|||.+++..
T Consensus      1302 ~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1302 ANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             SCCCC-----CCEEEEECC--------------------CCEEEEEE
T ss_pred             cccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            11101124579999999999877788889999999999999987754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.27  E-value=0.0042  Score=51.78  Aligned_cols=118  Identities=15%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--E-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .+++||.||.|-.++.+.+.|.  + |.++|+ +.+.+..+.|...                  ..+...|+.+......
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------------------~~~~~~DI~~~~~~~~   65 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------------------TNLLNRNIQQLTPQVI   65 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------------------SCEECCCGGGCCHHHH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------------------CceeccccccCCHHHh
Confidence            3799999999999999998886  5 779999 4577777776531                  1233334433322111


Q ss_pred             cCCCccEEEEeccccCc--------------cCHHHHHHHHHHhcCCCeEEEEEEEEcCh---hHHHHHHHHHh-cCCeE
Q 027530          142 VAPPFDYIIGTDVVYAE--------------HLLEPLLQTIFALSGPKTTILLGYEIRST---SVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~--------------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~---~~~~~f~~~~~-~~~~v  203 (222)
                      ....+|+++++.+=-..              ..+..+++.+..+-+|  .+++....+.-   .....+.+.++ .++.+
T Consensus        66 ~~~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v  143 (333)
T 4h0n_A           66 KKWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNFIY  143 (333)
T ss_dssp             HHTTCCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             ccCCCCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCCeE
Confidence            12369999987553211              1233344444333224  34444444332   23556666664 36655

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.20  E-value=0.053  Score=45.11  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=72.8

Q ss_pred             CCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhcccc-----ccCCCCC---CCCCceEEEEeecC
Q 027530           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRIS-----QMNPGSG---NLLGSIQAVELDWG  134 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~-----~~~~~~~---~~~~~v~~~~~d~~  134 (222)
                      ...|+.||||......-+...  +..++=+|.+++++.=++-+..++....     ...+..+   ....+...+..|..
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            468999999999888888764  3467778888887776666665431100     0000000   01246777877776


Q ss_pred             CCccc----cc--cCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          135 NEDHI----KA--VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       135 ~~~~~----~~--~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +..-.    ..  ......++++-.+++.  .+....+++.+.... |+|.+++....
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            53211    11  2345677887777755  345677888888876 67776554443

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.19  E-value=0.0081  Score=50.46  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=35.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHH
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~  105 (222)
                      ++..|||+|.|.|.++..++..  +.+|++++. ...+..+++..
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            4578999999999999999976  558999999 55888877655

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.14  E-value=0.017  Score=49.45  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHH-HhC---CEEEEecc-hhhHHHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMA-LLG---CNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la-~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      .++..|+|+||+.|..++.++ +.+   ++|++.+. ++..+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            467899999999999999887 443   57999997 7899999999988

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.07  E-value=0.011  Score=49.02  Aligned_cols=60  Identities=22%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-h---hhHHHHHHHHHHhh
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNT  109 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~---~~l~~~~~n~~~n~  109 (222)
                      ...|.+.+...        ...+|..|||-.||+|..++++.++|.+.+++|+ +   +.++.+++++...+
T Consensus       228 p~~l~~~~i~~--------~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          228 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHH--------hCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            45566666543        2346789999999999999999999999999999 6   78888888776543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.97  E-value=0.011  Score=48.47  Aligned_cols=43  Identities=21%  Similarity=0.166  Sum_probs=34.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEE---EEecc-hhhHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNV---ITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v---~~~D~-~~~l~~~~~n~  105 (222)
                      .+..+++||.||.|-.++.+.+.|.++   .++|+ +.+++..+.|.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~   60 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH   60 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC
Confidence            345689999999999999999999864   79998 45777766664

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.92  E-value=0.0098  Score=49.26  Aligned_cols=46  Identities=13%  Similarity=0.019  Sum_probs=40.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (222)
                      .+|..|||-.||+|..++++.++|.+.+++|+ +..++.+++++...
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence            46789999999999999999999999999999 56888888877643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.72  E-value=0.012  Score=48.88  Aligned_cols=42  Identities=21%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC--E-E-EEecc-hhhHHHHHHHHH
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC--N-V-ITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~--~-v-~~~D~-~~~l~~~~~n~~  106 (222)
                      ..+++||.||.|-.++.+.+.|.  + | .++|+ +.+.+..+.|..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~   56 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK   56 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC
Confidence            35899999999999999999884  5 5 69999 558888787764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.57  E-value=0.088  Score=43.45  Aligned_cols=94  Identities=20%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||-.|+|. |+..+.+++ .|++|+++|. ++-++.+++    .+..               .+  ++..+.+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------------~~--i~~~~~~  221 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---------------VA--VNARDTD  221 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---------------EE--EETTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---------------EE--EeCCCcC
Confidence            455788999999986 888877775 5889999997 555555543    2211               11  1222211


Q ss_pred             c---ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 H---IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~---~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .   .....+.+|+|+-+-.      ....++...+.++++|++++.
T Consensus       222 ~~~~~~~~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          222 PAAWLQKEIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HHHHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence            1   0011236888875421      245677788889999988764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.47  E-value=0.07  Score=44.76  Aligned_cols=93  Identities=25%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+..               .+  .+..+.+.
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~---------------~v--i~~~~~~~  250 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---------------EV--VNSRNADE  250 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---------------EE--EETTCHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---------------EE--eccccHHH
Confidence            44788999999985 777766665 5889999997 556666653    2211               11  12121110


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .......+|+|+-+--  ..    ..++...+.++++|++++.
T Consensus       251 ~~~~~~g~Dvvid~~g--~~----~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          251 MAAHLKSFDFILNTVA--AP----HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             HHTTTTCEEEEEECCS--SC----CCHHHHHTTEEEEEEEEEC
T ss_pred             HHHhhcCCCEEEECCC--CH----HHHHHHHHHhccCCEEEEe
Confidence            1111257999884321  11    2345566788888887654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.37  E-value=0.03  Score=46.16  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027530           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (222)
                      +||||-||.|-+++.+.+.|.+ |.++|+ +.+.+..+.|.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~   42 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH   42 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC
Confidence            7999999999999999999998 668999 55887777764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.87  E-value=0.1  Score=42.89  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=70.4

Q ss_pred             CeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc----
Q 027530           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK----  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~----  140 (222)
                      ..|++||||.=.-...+.. .+..|+=+|.++++..-++-+...+..          ...+..++..|..+ .-..    
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~----------~~~~~~~v~~Dl~d-~~~~~l~~  172 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT----------PTADRREVPIDLRQ-DWPPALRS  172 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC----------CSSEEEEEECCTTS-CHHHHHHH
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCC----------CCCCeEEEecchHh-hHHHHHHh
Confidence            4699999997655554442 245788899899888888877654421          23466777777665 2111    


Q ss_pred             --ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          141 --AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       141 --~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                        ......-++++-.++++  .+....+++.+...+.||+.+++.+..
T Consensus       173 ~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          173 AGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             TTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             ccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence              11123446666666655  344667899998888899888776654

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.85  E-value=0.29  Score=40.91  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+..               .+  .+..+.
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~v--i~~~~~  237 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---------------AT--VDPSAG  237 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---------------EE--ECTTSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---------------EE--ECCCCc
Confidence            345788999999976 777776665 488 7999997 445555543    2321               11  111111


Q ss_pred             c---ccc----ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 D---HIK----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~---~~~----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +   ...    ...+.+|+|+-+  .    .....+....++++++|++++..
T Consensus       238 ~~~~~i~~~~~~~~gg~Dvvid~--~----G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          238 DVVEAIAGPVGLVPGGVDVVIEC--A----GVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             CHHHHHHSTTSSSTTCEEEEEEC--S----CCHHHHHHHHHHEEEEEEEEECS
T ss_pred             CHHHHHHhhhhccCCCCCEEEEC--C----CCHHHHHHHHHHhccCCEEEEEe
Confidence            1   000    113479999853  2    12456777888899999987753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.64  E-value=0.072  Score=44.40  Aligned_cols=98  Identities=14%  Similarity=0.028  Sum_probs=58.7

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|+|. |+.++.+|+ .|++ |+++|. ++-++.+++. . ..               .+.+. .+-.+.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-~~---------------~~~~~-~~~~~~  237 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-PE---------------VVTHK-VERLSA  237 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-TT---------------CEEEE-CCSCCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-hh---------------ccccc-ccccch
Confidence            345788999999976 777777775 4887 999997 5566666653 1 10               11111 110000


Q ss_pred             cc----cc--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH----IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~----~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+    ..  .....+|+|+-+  .    --...+....++++++|++++..
T Consensus       238 ~~~~~~v~~~t~g~g~Dvvid~--~----g~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          238 EESAKKIVESFGGIEPAVALEC--T----GVESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHHHHHHTSSCCCSEEEEC--S----CCHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEC--C----CChHHHHHHHHHhcCCCEEEEEc
Confidence            00    00  113579999853  2    12346777788999999987753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.58  E-value=0.047  Score=45.75  Aligned_cols=95  Identities=17%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||-+|||. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+..               .+  ++..+.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~v--i~~~~~  245 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---------------HV--INSKTQ  245 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---------------EE--EETTTS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC---------------EE--ecCCcc
Confidence            345788999999986 777777775 588 6999997 555665543    2211               11  122211


Q ss_pred             c---cc-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 D---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~---~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +   .. ....+.+|+|+-+--      ....+....+.|+++|++++..
T Consensus       246 ~~~~~~~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          246 DPVAAIKEITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             CHHHHHHHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             CHHHHHHHhcCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeC
Confidence            1   01 111237999984421      2356777888899999987653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.56  E-value=0.031  Score=46.48  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+..               .+.  +..+.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------------~vi--~~~~~  221 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT---------------DII--NYKNG  221 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC---------------EEE--CGGGS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---------------eEE--cCCCc
Confidence            455788999999986 777777775 477 7999998 445555543    2211               111  11111


Q ss_pred             c---cc-c-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 D---HI-K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~---~~-~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +   .. . .....+|+|+-+  .-    ....+....++|+++|++++.
T Consensus       222 ~~~~~v~~~t~g~g~D~v~d~--~g----~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          222 DIVEQILKATDGKGVDKVVIA--GG----DVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CHHHHHHHHTTTCCEEEEEEC--SS----CTTHHHHHHHHEEEEEEEEEC
T ss_pred             CHHHHHHHHcCCCCCCEEEEC--CC----ChHHHHHHHHHHhcCCEEEEe
Confidence            1   00 0 113469999843  21    124677777888999988753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.44  E-value=0.41  Score=39.60  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-Cc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-ED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~  137 (222)
                      ..+|++||-+|+|. |+..+.+|+ +|++|+++|. ++-++.+++    .+.              . .+.  +..+ .+
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--------------~-~~~--~~~~~~~  224 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA--------------D-VTL--VVDPAKE  224 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC--------------S-EEE--ECCTTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC--------------C-EEE--cCccccc
Confidence            45788999999875 777766665 5889999997 455555542    221              1 111  2221 11


Q ss_pred             ---ccc--cc---CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 ---HIK--AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ---~~~--~~---~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         ...  ..   ...+|+|+-+--      ....+....++++++|++++..
T Consensus       225 ~~~~i~~~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          225 EESSIIERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             CHHHHHHHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHHhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence               011  01   257999985421      1345677778899999987653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.44  E-value=0.33  Score=39.60  Aligned_cols=93  Identities=24%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CCCCCCeEEEeC-CCc-cHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelG-cG~-G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=+| +|. |+..+.+|+ .|++|++++.++-++.+++    .+..               .+  .+..+.+
T Consensus       149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~----lGa~---------------~~--i~~~~~~  207 (321)
T 3tqh_A          149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA----LGAE---------------QC--INYHEED  207 (321)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----HTCS---------------EE--EETTTSC
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH----cCCC---------------EE--EeCCCcc
Confidence            456789999997 775 888877775 4889998876443444332    2321               11  2222221


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .....-..+|+|+-+  .    --.. .....++++++|+++..
T Consensus       208 ~~~~~~~g~D~v~d~--~----g~~~-~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          208 FLLAISTPVDAVIDL--V----GGDV-GIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             HHHHCCSCEEEEEES--S----CHHH-HHHHGGGEEEEEEEEEC
T ss_pred             hhhhhccCCCEEEEC--C----CcHH-HHHHHHhccCCCEEEEe
Confidence            011112468988843  2    1223 37777889999988764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.30  E-value=0.38  Score=39.42  Aligned_cols=60  Identities=15%  Similarity=0.044  Sum_probs=37.0

Q ss_pred             CCCccEEEEecc--ccCccCH-HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEecC
Q 027530          143 APPFDYIIGTDV--VYAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       143 ~~~fD~Ii~~d~--~y~~~~~-~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                      ..+||+|+.-..  --+++++ ..+++.+.++++|||++. ++ ....    ...+.+ ..||+|+.++-
T Consensus       184 ~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la-TY-taag----~VRR~L~~aGF~V~k~~G  247 (308)
T 3vyw_A          184 NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV-SY-SSSL----SVRKSLLTLGFKVGSSRE  247 (308)
T ss_dssp             SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ES-CCCH----HHHHHHHHTTCEEEEEEC
T ss_pred             ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE-EE-eCcH----HHHHHHHHCCCEEEecCC
Confidence            347999986431  1122333 469999999999999753 22 2222    222323 56999998875

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.24  E-value=0.39  Score=38.08  Aligned_cols=109  Identities=16%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      +..++|+++|=-|++.|+   ++..+++.|++|++++.  .+..+.+.+.+...+              .++.+...|..
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~   78 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--------------SDAIAIKADIR   78 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTT
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCC
Confidence            456789999999988775   33455567999998875  334555555444332              46778888877


Q ss_pred             CCccccc-------cCCCccEEEEeccccCcc-----C---H-----------HHHHHHHHHhcCCCeEEEEEE
Q 027530          135 NEDHIKA-------VAPPFDYIIGTDVVYAEH-----L---L-----------EPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       135 ~~~~~~~-------~~~~fD~Ii~~d~~y~~~-----~---~-----------~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +......       .-++.|++|.+--+....     .   +           -.+.+.+...++++|.+++..
T Consensus        79 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           79 QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            6543211       124789998764433211     1   1           124455555667777776543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.03  E-value=0.15  Score=40.62  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+...+              .++.....|..+.
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--------------~~~~~~~~Dv~~~   70 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--------------YDAHGVAFDVTDE   70 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--------------CCEEECCCCTTCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCH
Confidence            35789999999999885   45566778999999998 556665555555443              3567777777765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +...       ..-++.|++|.|--+
T Consensus        71 ~~v~~~~~~~~~~~G~iDiLVNNAG~   96 (255)
T 4g81_D           71 LAIEAAFSKLDAEGIHVDILINNAGI   96 (255)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEECCCC
Confidence            4321       123579999877544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=94.01  E-value=0.045  Score=45.51  Aligned_cols=41  Identities=15%  Similarity=0.072  Sum_probs=33.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~  102 (222)
                      ..+|..++|..||.|--+..+++. +  .+|+++|. +++++.++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            346889999999999999888865 4  47999999 66888873

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.90  E-value=0.58  Score=38.98  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             CCCeEEEeC-CCc-cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-
Q 027530           64 KGKRVIELG-AGC-GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-  137 (222)
Q Consensus        64 ~~~~vLelG-cG~-G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  137 (222)
                      +|.+||=.| +|. |+.++.+|+.  |++|+++|. ++-++.+++    .+..               .+  .+..+.. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---------------~v--i~~~~~~~  229 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---------------HV--IDHSKPLA  229 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---------------EE--ECTTSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---------------EE--EeCCCCHH
Confidence            678999998 675 8888888874  679999998 555555543    2211               11  1111110 


Q ss_pred             -cc-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 -HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 -~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       .. ......+|+|+-+  .    --...+....++++++|++++.
T Consensus       230 ~~v~~~~~~g~Dvvid~--~----g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          230 AEVAALGLGAPAFVFST--T----HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHHTTCSCCEEEEEEC--S----CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHhcCCCceEEEEC--C----CchhhHHHHHHHhcCCCEEEEE
Confidence             00 1123579988843  1    2345778888899999998765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.88  E-value=0.15  Score=40.57  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=55.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|==|++.|+   ++..+++.|++|+.+|. ++.++.+.+.++..+              .++.+...|..+.+
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--------------~~~~~~~~Dvt~~~   69 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--------------KEVLGVKADVSKKK   69 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence            4689999999999886   44566678999999998 556666666665443              46778888887765


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.|-
T Consensus        70 ~v~~~~~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           70 DVEEFVRRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECC
Confidence            432       1125799998764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.75  E-value=0.65  Score=36.92  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|. + +..+.+.+.+...+              .++.+...|..+
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d   92 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--------------GRAVAIRADNRD   92 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------------CcEEEEECCCCC
Confidence            35688999999998775   33455667999998865 3 34444444444322              367778877776


Q ss_pred             Cccccc-------cCCCccEEEEeccccCcc-----C---H-----------HHHHHHHHHhcCCCeEEEEE
Q 027530          136 EDHIKA-------VAPPFDYIIGTDVVYAEH-----L---L-----------EPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~~y~~~-----~---~-----------~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .+....       .-++.|++|.+--+....     .   +           -.+++.+...++++|.+++.
T Consensus        93 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A           93 AEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            543211       124789998775443211     1   1           12445555566777776654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.72  E-value=0.45  Score=35.71  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             CCCCCeEEEeCCC--ccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAG--CGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG--~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|++||-.|++  .|...+.++ ..|++|+++|. ++.++.+++    .+.              . .  ..+..+.+
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--------------~-~--~~d~~~~~   94 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--------------E-Y--VGDSRSVD   94 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--------------S-E--EEETTCST
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--------------C-E--EeeCCcHH
Confidence            4578899999953  355444444 46899999997 444444322    121              1 1  12333221


Q ss_pred             cc----c-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~~----~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ..    . .....+|+++.+--       ...+....+.++++|++++.
T Consensus        95 ~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A           95 FADEILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence            10    0 11246999985421       24567778889999988764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=93.68  E-value=0.5  Score=37.43  Aligned_cols=81  Identities=20%  Similarity=0.344  Sum_probs=53.5

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +.+++||++|==|++.|+   .+..+++.|++|+.+|.... +.+.+.++..+              .++.+...|..+.
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~g--------------~~~~~~~~Dv~d~   68 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKDG--------------GNASALLIDFADP   68 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT--------------CCEEEEECCTTST
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhC--------------CcEEEEEccCCCH
Confidence            457899999999999886   45567778999999997322 22233333333              3667777787765


Q ss_pred             cccc--ccCCCccEEEEeccc
Q 027530          137 DHIK--AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~--~~~~~fD~Ii~~d~~  155 (222)
                      ....  ....+.|++|.|--+
T Consensus        69 ~~v~~~~~~g~iDiLVNNAGi   89 (247)
T 4hp8_A           69 LAAKDSFTDAGFDILVNNAGI   89 (247)
T ss_dssp             TTTTTSSTTTCCCEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEECCCC
Confidence            4332  124679999877444

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.64  E-value=0.76  Score=36.21  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~--G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      .++||++|=-|++.  |+   ++..+++.|++|+.+|. ++.++.+.+-++..+             ..++.+...|..+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~   69 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-------------QPEAHLYQIDVQS   69 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-------------CSSCEEEECCTTC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCcEEEEEccCCC
Confidence            56899999999532  43   45667788999999998 456666655554322             2356778888776


Q ss_pred             Ccccc-------ccCCCccEEEEec
Q 027530          136 EDHIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d  153 (222)
                      .+...       ..-++.|+++.+-
T Consensus        70 ~~~v~~~~~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           70 DEEVINGFEQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecc
Confidence            54321       1135799988763

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.58  E-value=0.53  Score=38.73  Aligned_cols=93  Identities=24%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|++||-+|+|. |+..+.+++ .|++|+++|. ++-++.+++    .+..               .+  .+..+.+.
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------------~~--~d~~~~~~  220 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---------------LV--VNPLKEDA  220 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---------------EE--ECTTTSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---------------EE--ecCCCccH
Confidence            44688999999974 666666554 5889999997 555555532    2211               11  22222110


Q ss_pred             ---ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 ---IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ---~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                         .......+|+|+-+--      ....++...++++++|++++.
T Consensus       221 ~~~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          221 AKFMKEKVGGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence               0000146999885422      134667777888999987754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.46  E-value=0.44  Score=39.35  Aligned_cols=93  Identities=23%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             CCCCCeEEEeCC--CccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGA--GCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGc--G~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|++||-.|+  |.|...+.+++ .|++|+++|. ++.++.+++    .+.              .   ...|..+..
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~--------------~---~~~d~~~~~  225 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG--------------E---VFIDFTKEK  225 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC--------------C---EEEETTTCS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC--------------c---eEEecCccH
Confidence            457889999998  34666655554 6889999997 455554432    221              1   112333211


Q ss_pred             ccc-----ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 HIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~~~-----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ...     .....+|+|+-+--      ....++...+.++++|++++.
T Consensus       226 ~~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          226 DIVGAVLKATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CHHHHHHHHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEEC
T ss_pred             hHHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEE
Confidence            110     01127999886532      235677778888999988764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.46  E-value=0.65  Score=37.31  Aligned_cols=79  Identities=24%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|. .+ ..+.+.+-++..              ..++.+...|..+
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~d  108 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE--------------GVKCVLLPGDLSD  108 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--------------TCCEEEEESCTTS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--------------CCcEEEEECCCCC
Confidence            35688999999988775   33445567999999987 33 344444333322              2467788888776


Q ss_pred             Cccccc-------cCCCccEEEEec
Q 027530          136 EDHIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d  153 (222)
                      ......       .-++.|++|.+-
T Consensus       109 ~~~v~~~~~~~~~~~g~iD~lvnnA  133 (291)
T 3ijr_A          109 EQHCKDIVQETVRQLGSLNILVNNV  133 (291)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECC
Confidence            543211       124789999763

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.41  E-value=0.1  Score=43.13  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530           61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        61 ~~~~~~~vLelGcG~--G~~~i~la~-~g~~v~~~D~-~~~l~~~~~  103 (222)
                      ...+|++||-.|+|.  |+..+.+++ .|++|+++|. ++-++.+++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            455789999999974  666666554 5999999997 556666654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.28  E-value=0.91  Score=36.03  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...              ..
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   71 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--------------GR   71 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--------------TS
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--------------CC
Confidence            35688999999998775   334455679999998853             2233333333322              24


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus        72 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           72 KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            67888888776543211       12478999876544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.18  E-value=0.62  Score=38.37  Aligned_cols=44  Identities=20%  Similarity=0.123  Sum_probs=34.2

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      .+|-=||||+ |. ++..+|..|.+|+..|. ++.++.+.++++.+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l   53 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEM   53 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            5789999997 53 56667788999999998 668887777776543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.13  E-value=0.11  Score=44.19  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~  102 (222)
                      ..+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  255 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK  255 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            45788999999975 777776665 488 8999997 55556554

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.08  E-value=0.71  Score=37.78  Aligned_cols=93  Identities=17%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||=.|+ | .|+..+.+++ .|++|+++|. ++-++.+++    .+..               .+  .+..+.
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---------------~~--~~~~~~  203 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGAE---------------YL--INASKE  203 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---------------EE--EETTTS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---------------EE--EeCCCc
Confidence            3457899999994 4 3766666664 5889999997 555554433    2211               11  122221


Q ss_pred             ccc---c--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHI---K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~---~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +..   .  .....+|+|+-+--       ...+....+.++++|++++.
T Consensus       204 ~~~~~~~~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          204 DILRQVLKFTNGKGVDASFDSVG-------KDTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CHHHHHHHHTTTSCEEEEEECCG-------GGGHHHHHHHEEEEEEEEEC
T ss_pred             hHHHHHHHHhCCCCceEEEECCC-------hHHHHHHHHHhccCCEEEEE
Confidence            110   0  11347999985422       14566677788999988764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.02  E-value=0.18  Score=42.11  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027530           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~  102 (222)
                      +|.+||=+|+|. |+..+.+++ .|++|+++|. ++-++.++
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL  228 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            788999999875 666665554 5889999997 55554443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.72  E-value=0.1  Score=42.86  Aligned_cols=94  Identities=17%  Similarity=0.090  Sum_probs=55.8

Q ss_pred             CCCCCCeEEEeC-CCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelG-cG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||=.| +|. |+..+.+++ .|++|+++|. ++-++.+++    .+..               .+  .+..+.
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---------------~~--~~~~~~  195 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGAW---------------ET--IDYSHE  195 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---------------EE--EETTTS
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---------------EE--EeCCCc
Confidence            345789999999 453 777766664 5999999997 555555543    2211               11  122221


Q ss_pred             ccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +..     ......+|+|+-+--     .  ..+....+.++++|++++..
T Consensus       196 ~~~~~~~~~~~~~g~Dvvid~~g-----~--~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          196 DVAKRVLELTDGKKCPVVYDGVG-----Q--DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CHHHHHHHHTTTCCEEEEEESSC-----G--GGHHHHHTTEEEEEEEEECC
T ss_pred             cHHHHHHHHhCCCCceEEEECCC-----h--HHHHHHHHHhcCCCEEEEEe
Confidence            110     011347999985422     1  35666777889999887653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.72  E-value=0.28  Score=38.68  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=53.9

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..++|+++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d   72 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--------------GKAIGLECNVTD   72 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--------------CCEEEEECCTTC
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEECCCCC
Confidence            345788999999998775   33455667999999997 445555555554332              467778878776


Q ss_pred             Cccccc-------cCCCccEEEEeccc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ......       .-++.|++|.+--+
T Consensus        73 ~~~v~~~~~~~~~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           73 EQHREAVIKAALDQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            543211       12478999876443

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.68  E-value=1.5  Score=34.35  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=50.7

Q ss_pred             CCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        62 ~~~~~~vLelGcG--~G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      .++++++|=.|++  .|+   ++..+++.|++|++++.. ...+.+++-....+             ..++.+...|..+
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~   70 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-------------RNDSIILPCDVTN   70 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-------------SCCCEEEECCCSS
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-------------CCCceEEeCCCCC
Confidence            4578999999976  454   445566779999999874 34444443333221             1267888888877


Q ss_pred             Cccccc-------cCCCccEEEEeccc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ......       .-++.|++|.+--+
T Consensus        71 ~~~v~~~~~~~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           71 DAEIETCFASIKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             SHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCeeEEEEcccc
Confidence            654321       12478998876443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.41  E-value=0.59  Score=38.01  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             eEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           67 RVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        67 ~vLelGc-G~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      +||=.|+ |. |+..+.+|+ .|++|+++|. ++-++.+++    .+..              ..+...+...  .....
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--------------~vi~~~~~~~--~~~~~  208 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGAN--------------RILSRDEFAE--SRPLE  208 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTCS--------------EEEEGGGSSC--CCSSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC--------------EEEecCCHHH--HHhhc
Confidence            4999997 53 887777775 4889999997 556666654    2211              0111111110  01112


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ...+|+|+-+  .     -.+.+....++++++|++++.
T Consensus       209 ~~~~d~v~d~--~-----g~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          209 KQLWAGAIDT--V-----GDKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CCCEEEEEES--S-----CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCccEEEEC--C-----CcHHHHHHHHHHhcCCEEEEE
Confidence            3579988743  2     123778888899999998765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.39  E-value=0.47  Score=37.35  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +              .++.+...|..+..
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dv~~~~   67 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--------------PRVHALRSDIADLN   67 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--------------GGEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CcceEEEccCCCHH
Confidence            4678999999988775   33445567999999997 44444433322   1              25677787776654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        68 ~v~~~~~~~~~~~g~id~lv~nAg~   92 (255)
T 4eso_A           68 EIAVLGAAAGQTLGAIDLLHINAGV   92 (255)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            321       112478999876443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.38  E-value=0.37  Score=38.10  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~   73 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--------------RRALSVGTDITDDA   73 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHH
Confidence            4678999999998875   34456667999999997 455555555554332              46788888887654


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.+-
T Consensus        74 ~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           74 QVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCcEEEECC
Confidence            321       1125799999775

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.36  E-value=0.3  Score=38.20  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   71 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--------------GTAISVAVDVSDPE   71 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTSHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence            4678999999987764   33445566999999997 455555555554322              36777887877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        72 ~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           72 SAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            3211       12479999987544

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.32  E-value=0.27  Score=38.67  Aligned_cols=79  Identities=28%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+..
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~   69 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--------------GRIVARSLDARNED   69 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--------------CEEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEECcCCCHH
Confidence            3578899999998875   33445567999999997 556666666555433              36788888877654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       .. ++.|++|.+--+
T Consensus        70 ~v~~~~~~~~~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           70 EVTAFLNAADAH-APLEVTIFNVGA   93 (252)
T ss_dssp             HHHHHHHHHHHH-SCEEEEEECCCC
T ss_pred             HHHHHHHHHHhh-CCceEEEECCCc
Confidence            321       12 578999876544

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.29  E-value=0.29  Score=39.11  Aligned_cols=80  Identities=19%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~d~~   94 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--------------GKALPIRCDVTQPD   94 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--------------CCCEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeEEEEEcCCCCHH
Confidence            5688999999988765   33455567999999997 556666555554332              35677787877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg~  119 (276)
T 3r1i_A           95 QVRGMLDQMTGELGGIDIAVCNAGI  119 (276)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3221       12479999876544

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.11  E-value=1  Score=35.86  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=48.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++. ++ ..+.+.+.+...+              .++.+...|..+.
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   91 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--------------SDAACVKANVGVV   91 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--------------CCeEEEEcCCCCH
Confidence            3578899999987764   22344556999999886 33 3444444443322              3567777777665


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-+..|++|.+--+
T Consensus        92 ~~~~~~~~~~~~~~g~iD~lv~~Ag~  117 (283)
T 1g0o_A           92 EDIVRMFEEAVKIFGKLDIVCSNSGV  117 (283)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            43211       11478999877543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=92.00  E-value=1.2  Score=35.81  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CCCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           61 SKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        61 ~~~~~~~vLelGcG~--G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ..++++++|=.|++.  |+   ++..+++.|++|+++|.. +..+.+++-.+..+               .+.+...|..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~Dv~   90 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---------------VKLTVPCDVS   90 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---------------CCEEEECCTT
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---------------CeEEEEcCCC
Confidence            356789999999854  44   455666779999999974 34444444333322               3567777777


Q ss_pred             CCccccc-------cCCCccEEEEeccc
Q 027530          135 NEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       135 ~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      +.+....       .-++.|++|.+--+
T Consensus        91 d~~~v~~~~~~~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A           91 DAESVDNMFKVLAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            6543211       12478999977544

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.97  E-value=0.4  Score=37.76  Aligned_cols=82  Identities=26%  Similarity=0.313  Sum_probs=53.7

Q ss_pred             CCCCCCeEEEeCC-CccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGc-G~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..++++++|=.|+ |.|+   ++..+++.|++|+++|. .+.++.+.+.+....             ..++.+...|..+
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~   84 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-------------LGRVEAVVCDVTS   84 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-------------SSCEEEEECCTTC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-------------CCceEEEEeCCCC
Confidence            3468899999998 6665   34456677999999997 445555555443221             2478888888876


Q ss_pred             Cccccc-------cCCCccEEEEeccc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ......       .-++.|++|.+--+
T Consensus        85 ~~~v~~~~~~~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           85 TEAVDALITQTVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence            543221       12478999877544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=91.90  E-value=1.1  Score=37.09  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CCCCCeEEEeC-CC-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELG-AG-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelG-cG-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|++||=.| +| .|+..+.+++ .|++|+++|. ++-++.+++    .+..               .+  .+..+.+
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga~---------------~~--~~~~~~~  219 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGCD---------------RP--INYKTEP  219 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---------------EE--EETTTSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCCc---------------EE--EecCChh
Confidence            45788999999 45 4877776665 5889999997 445555543    2211               11  1222111


Q ss_pred             c---c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 H---I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~---~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .   . ......+|+|+-+--     .  ..++.+.+.++++|++++..
T Consensus       220 ~~~~~~~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          220 VGTVLKQEYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             HHHHHHHHCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEe
Confidence            0   0 011346999985522     1  46677778889999877643

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.89  E-value=0.2  Score=39.49  Aligned_cols=79  Identities=29%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...              ..++.+...|..+..
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~   68 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF--------------PGQILTVQMDVRNTD   68 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--------------TTCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCHH
Confidence            4678999999988765   33445567999999997 44555544433321              246788888887654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-++.|++|.+--
T Consensus        69 ~v~~~~~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           69 DIQKMIEQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3221       1247899987644

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.84  E-value=0.38  Score=38.96  Aligned_cols=80  Identities=14%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|++||=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+..
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~   93 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--------------FDAHGVVCDVRHLD   93 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CceEEEEccCCCHH
Confidence            4678999999998765   33445566999999997 455555555554332              36778888877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       ..+..|++|.+--+
T Consensus        94 ~v~~~~~~~~~~~g~id~lvnnAg~  118 (301)
T 3tjr_A           94 EMVRLADEAFRLLGGVDVVFSNAGI  118 (301)
T ss_dssp             HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCc
Confidence            3221       12479999877443

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=91.83  E-value=0.43  Score=37.31  Aligned_cols=79  Identities=22%  Similarity=0.332  Sum_probs=50.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+...+              .++.+...|..+..
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~~~~   69 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--------------AKVHVLELDVADRQ   69 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEECCCCCHH
Confidence            4578899999987764   23345566999999997 445554444443222              35677787877654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-+..|++|.+--
T Consensus        70 ~~~~~~~~~~~~~g~id~lv~nAg   93 (247)
T 2jah_A           70 GVDAAVASTVEALGGLDILVNNAG   93 (247)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1147899987643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=91.80  E-value=0.4  Score=38.27  Aligned_cols=80  Identities=18%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~   95 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--------------GTAQELAGDLSEAG   95 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--------------CCEEEEECCTTSTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CeEEEEEecCCCHH
Confidence            4678999999988765   33445567999999997 455555555554332              46778888877654


Q ss_pred             cccc------cCCCccEEEEeccc
Q 027530          138 HIKA------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~------~~~~fD~Ii~~d~~  155 (222)
                      ....      ..++.|++|.+--+
T Consensus        96 ~~~~~~~~~~~~g~iD~lvnnAg~  119 (275)
T 4imr_A           96 AGTDLIERAEAIAPVDILVINASA  119 (275)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            3211      01579999877544

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=91.78  E-value=0.48  Score=37.77  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..++|+++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+....             ..++.+...|..+
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~   88 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-------------GRRCLPLSMDVRA   88 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-------------SSCEEEEECCTTC
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCcEEEEEcCCCC
Confidence            456789999999998775   33345566999999997 444444433332211             2467888888776


Q ss_pred             Cccccc-------cCCCccEEEEecc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ......       .-++.|++|.+--
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           89 PPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            543211       1247999987654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.73  E-value=1.6  Score=34.47  Aligned_cols=82  Identities=16%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|++++. ++.++.+.+.+...+.            ...+.+...|..+..
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~   96 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY------------PGTLIPYRCDLSNEE   96 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC------------CceEEEEEecCCCHH
Confidence            3578899999977654   22334456999999997 4444544444443221            135677777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-+.+|+||.+--+
T Consensus        97 ~v~~~~~~~~~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A           97 DILSMFSAIRSQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCC
Confidence            3211       11378999876443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.72  E-value=1.7  Score=34.83  Aligned_cols=80  Identities=19%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             CCCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           61 SKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        61 ~~~~~~~vLelGcG--~G~---~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ..++|+++|=.|++  .|+   ++..+++.|++|++++..+ ..+.+++-....               .++.+...|..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~Dv~   91 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---------------GAFVAGHCDVA   91 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---------------TCEEEEECCTT
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---------------CCceEEECCCC
Confidence            34688999999976  334   4455667799999998743 333333322222               24677787877


Q ss_pred             CCcccc-------ccCCCccEEEEeccc
Q 027530          135 NEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       135 ~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +.....       ..-++.|++|.+--+
T Consensus        92 d~~~v~~~~~~~~~~~g~iD~lVnnAG~  119 (293)
T 3grk_A           92 DAASIDAVFETLEKKWGKLDFLVHAIGF  119 (293)
T ss_dssp             CHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence            654321       112579999877544

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.53  E-value=1.6  Score=34.95  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h--hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+.+|.. +  ..+.+.+.++..+              .++.+...|..
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~  110 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--------------RKAVLLPGDLS  110 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--------------CCEEECCCCTT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--------------CcEEEEEecCC
Confidence            35688999999988765   334455679999999863 2  3444444333322              35677777776


Q ss_pred             CCcccc-------ccCCCccEEEEeccc
Q 027530          135 NEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       135 ~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +.....       ..-++.|++|.+--+
T Consensus       111 d~~~v~~~~~~~~~~~g~iD~lv~nAg~  138 (294)
T 3r3s_A          111 DESFARSLVHKAREALGGLDILALVAGK  138 (294)
T ss_dssp             SHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            654321       112478999876543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.45  E-value=0.6  Score=36.94  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=53.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+....             ..++.+...|..+..
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dv~~~~   83 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-------------GTDVHTVAIDLAEPD   83 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------CCCEEEEECCTTSTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            4678999999988765   33455567999999997 445555554444321             236788888887765


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        84 ~v~~~~~~~~~~~g~id~lv~nAg~  108 (266)
T 4egf_A           84 APAELARRAAEAFGGLDVLVNNAGI  108 (266)
T ss_dssp             HHHHHHHHHHHHHTSCSEEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            4321       12479999876544

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.28  E-value=0.61  Score=36.64  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=49.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   71 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--------------FKVEASVCDLSSRS   71 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHH
Confidence            3578899999987664   23345566999999997 444444444443222              35677787877654


Q ss_pred             cccc--------cCCCccEEEEeccc
Q 027530          138 HIKA--------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~--------~~~~fD~Ii~~d~~  155 (222)
                      ....        ..+..|++|.+--+
T Consensus        72 ~~~~~~~~~~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           72 ERQELMNTVANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            3211        11579999876543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=91.24  E-value=0.33  Score=39.96  Aligned_cols=93  Identities=22%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-h-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+||=+|+|. |...+.+++ . |++|+++|. ++-++.+++    .+..               .+  .+..+.+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~---------------~~--i~~~~~~  219 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD---------------VT--INSGDVN  219 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS---------------EE--EEC-CCC
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe---------------EE--EeCCCCC
Confidence            45788999999987 455554444 4 668999997 443444332    2211               11  1222211


Q ss_pred             c---cc--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 H---IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~---~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .   ..  .....+|.++-+-.      -...+....+.++++|++++.
T Consensus       220 ~~~~v~~~t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          220 PVDEIKKITGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             HHHHHHHHTTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhhhhcCCCCceEEEEecc------CcchhheeheeecCCceEEEE
Confidence            1   11  11235666654321      245667777888999987764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.17  E-value=0.44  Score=37.98  Aligned_cols=81  Identities=21%  Similarity=0.310  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..+..+...+.+...              ..++.+...|..+..
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~d~~   92 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG--------------GGSAEAVVADLADLE   92 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT--------------TCEEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc--------------CCcEEEEEecCCCHH
Confidence            45788999999998775   3345556799999998644333333333322              246778888877654


Q ss_pred             ccccc------CCCccEEEEeccc
Q 027530          138 HIKAV------APPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~~------~~~fD~Ii~~d~~  155 (222)
                      .....      .++.|++|.+--+
T Consensus        93 ~v~~~~~~~~~~g~iD~lv~nAg~  116 (273)
T 3uf0_A           93 GAANVAEELAATRRVDVLVNNAGI  116 (273)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCCC
Confidence            32111      1479999877544

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.15  E-value=0.19  Score=40.76  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=38.9

Q ss_pred             CceEEEEeecCCCccccccCCCccEEEEeccccCccC--------------------HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          124 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       124 ~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~--------------------~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..+++.+.|+.+... ...+++||+|+++++++....                    +..+++.+.++|+|+|.+++...
T Consensus        20 ~~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            356777766643211 123578999999999863211                    23466778889999999988754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.14  E-value=1.1  Score=35.25  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h---hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ..++++++|=-|++.|+   ++..+++.|++|+.++. .   +.++.+.+.+...              ..++.+...|.
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv   72 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--------------GAKVALYQSDL   72 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--------------TCEEEEEECCC
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--------------CCcEEEEECCC
Confidence            45688999999998775   23344556899998764 2   2334333333322              24678888887


Q ss_pred             CCCccccc-------cCCCccEEEEeccc
Q 027530          134 GNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       134 ~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .+.+....       .-++.|++|.+--+
T Consensus        73 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           73 SNEEEVAKLFDFAEKEFGKVDIAINTVGK  101 (262)
T ss_dssp             CSHHHHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            76543221       12478999876543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.06  E-value=1.4  Score=35.84  Aligned_cols=93  Identities=11%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGA-G-CGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGc-G-~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||-.|+ | .|...+.++ ..|++|+++|. ++-++.+++    .+..                 ...+..+.
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~~-----------------~~~~~~~~  195 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW-----------------QVINYREE  195 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS-----------------EEEETTTS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-----------------EEEECCCc
Confidence            3457889999994 3 366555444 46899999997 445555543    1211                 11232222


Q ss_pred             cccc-----ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~~-----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +...     .....+|+++-+--       ...++...++++++|++++.
T Consensus       196 ~~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          196 DLVERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CHHHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred             cHHHHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEE
Confidence            1100     11246999986522       24567777888999987764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.06  E-value=0.41  Score=37.82  Aligned_cols=82  Identities=18%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+             ..++.+...|..+.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-------------SGKVIGVQTDVSDR   72 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-------------SSCEEEEECCTTSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-------------CCcEEEEEcCCCCH
Confidence            35688999999988765   33445567999999997 445555554444322             14678888887765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-++.|++|.+--+
T Consensus        73 ~~v~~~~~~~~~~~g~id~lvnnAg~   98 (262)
T 3pk0_A           73 AQCDALAGRAVEEFGGIDVVCANAGV   98 (262)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            43221       12479999877544

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.04  E-value=1.1  Score=35.49  Aligned_cols=79  Identities=15%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+++++|=-|++.|+   ++..+++.|++|+.++.  .+..+.+.+.+...+              .++.+...|..+..
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~   90 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--------------GKALTAQADVSDPA   90 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--------------CeEEEEEcCCCCHH
Confidence            367899999988775   33456667999988753  335555544444332              36777888877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        91 ~v~~~~~~~~~~~g~iD~lvnnAG~  115 (267)
T 3u5t_A           91 AVRRLFATAEEAFGGVDVLVNNAGI  115 (267)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3221       12479999877544

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.95  E-value=0.71  Score=36.60  Aligned_cols=80  Identities=16%  Similarity=0.112  Sum_probs=50.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.+
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   83 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LNVEGSVCDLLSRT   83 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEECCCCCHH
Confidence            4678999999987664   23345566999999997 444444444343222              35677787777654


Q ss_pred             cccc--------cCCCccEEEEeccc
Q 027530          138 HIKA--------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~--------~~~~fD~Ii~~d~~  155 (222)
                      ....        ..+..|++|.+--+
T Consensus        84 ~~~~~~~~~~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           84 ERDKLMQTVAHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCcEEEECCCC
Confidence            3211        11679999877543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=90.94  E-value=0.33  Score=38.65  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=52.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~   88 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--------------HDAEAVAFDVTSES   88 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--------------CCEEECCCCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEcCCCCHH
Confidence            4678999999987765   33445567999999997 455555555444332              35677777777654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ...++.|++|.+--+
T Consensus        89 ~v~~~~~~~~~~~g~iD~lv~nAg~  113 (271)
T 4ibo_A           89 EIIEAFARLDEQGIDVDILVNNAGI  113 (271)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCC
Confidence            321       113479999877544

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=90.84  E-value=0.63  Score=36.84  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+.+++||=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--------------AKVHTFVVDCSNR   92 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--------------CeEEEEEeeCCCH
Confidence            45678999999987654   22334456999999997 444554444444322              3677888887765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-+.+|+||.+--+
T Consensus        93 ~~v~~~~~~~~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A           93 EDIYSSAKKVKAEIGDVSILVNNAGV  118 (272)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence            4321       112478999877543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=90.83  E-value=0.46  Score=37.77  Aligned_cols=78  Identities=15%  Similarity=0.220  Sum_probs=50.8

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              ..+.+...|..+....
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~d~~~v   68 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--------------GTALAQVLDVTDRHSV   68 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--------------CEEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHHHH
Confidence            56889999988775   33445567999999997 455555555554332              3567777787765432


Q ss_pred             cc-------cCCCccEEEEeccc
Q 027530          140 KA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       140 ~~-------~~~~fD~Ii~~d~~  155 (222)
                      ..       .-++.|++|.+--+
T Consensus        69 ~~~~~~~~~~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           69 AAFAQAAVDTWGRIDVLVNNAGV   91 (264)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       12479999877544

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.81  E-value=0.51  Score=37.51  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~~   90 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--------------LEGRGAVLNVNDAT   90 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--------------CCCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEEeCCCHH
Confidence            4678899999987765   33455667999999997 445555555554433              35667777776654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        91 ~v~~~~~~~~~~~g~iD~lvnnAg~  115 (270)
T 3ftp_A           91 AVDALVESTLKEFGALNVLVNNAGI  115 (270)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       12478999877543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=90.72  E-value=0.52  Score=37.32  Aligned_cols=82  Identities=21%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      ...+++++||=.|++.|+   ++..+++.|++|++++. ++ ..+.+.+.++..+              .++.+...|..
T Consensus        24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~   89 (271)
T 4iin_A           24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG--------------YKAAVIKFDAA   89 (271)
T ss_dssp             CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTT
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------------CceEEEECCCC
Confidence            346788999999998775   33445567999999886 33 4555554444332              36778887877


Q ss_pred             CCcccc-------ccCCCccEEEEeccc
Q 027530          135 NEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       135 ~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +.....       ...++.|++|.+--+
T Consensus        90 ~~~~v~~~~~~~~~~~g~id~li~nAg~  117 (271)
T 4iin_A           90 SESDFIEAIQTIVQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            654321       112479999877544

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.63  E-value=1.6  Score=35.07  Aligned_cols=81  Identities=22%  Similarity=0.185  Sum_probs=49.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+...
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~Dv~d~~~   92 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV-----------PAEKINAVVADVTEASG   92 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------CGGGEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCceEEEEecCCCCHHH
Confidence            578899999987664   23344556999999997 4455544444433220           01257778888776543


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       .-++.|++|.+--
T Consensus        93 v~~~~~~~~~~~g~iD~lvnnAG  115 (297)
T 1xhl_A           93 QDDIINTTLAKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            221       1147899987644

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=90.55  E-value=0.99  Score=35.99  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..+.++++|=-|++.|+   ++..+++.|++|+++|.  ++.++.+.+.+...+              .++.+...|..+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d   90 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--------------ARVIFLRADLAD   90 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--------------CCEEEEECCTTS
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--------------CcEEEEEecCCC
Confidence            34678899999988775   33455667999999985  334555444444332              467888888877


Q ss_pred             Cccccc-------cCCCccEEEEeccc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ......       .-++.|++|.+--+
T Consensus        91 ~~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           91 LSSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             GGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            654321       12478999876543

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.52  E-value=0.7  Score=36.97  Aligned_cols=81  Identities=12%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-  136 (222)
                      ..++++||=-|++.|+   ++..+++.|++|++++. .+..+.+.+.+...+             ..++.+..+|..+. 
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~~~   75 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-------------HENVVFHQLDVTDPI   75 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------CCSEEEEECCTTSCH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CCceEEEEccCCCcH
Confidence            4577899999988764   33345566999999997 444444444443222             24688888888876 


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ...++.|++|.+--+
T Consensus        76 ~~v~~~~~~~~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           76 ATMSSLADFIKTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            3221       112479999987544

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=90.41  E-value=1.2  Score=34.17  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=48.5

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|=.|++.|+   ++..+++.|++|++++. .+.++.+.+.+....             ..++.+...|..+.....
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~v~   68 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-------------GVEVFYHHLDVSKAESVE   68 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------CCCEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCeEEEEEeccCCHHHHH
Confidence            5788888987664   23345556999999997 445555544443221             246788888877654332


Q ss_pred             cc-------CCCccEEEEeccc
Q 027530          141 AV-------APPFDYIIGTDVV  155 (222)
Q Consensus       141 ~~-------~~~fD~Ii~~d~~  155 (222)
                      ..       -++.|++|.+--+
T Consensus        69 ~~~~~~~~~~g~id~li~~Ag~   90 (235)
T 3l77_A           69 EFSKKVLERFGDVDVVVANAGL   90 (235)
T ss_dssp             HHCC-HHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCcc
Confidence            11       1378999877544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.41  E-value=1.2  Score=34.40  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+...+              .++.+...|..+...
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~   68 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--------------FKARGLVLNISDIES   68 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEecCCCHHH
Confidence            467899999987664   33445567999999997 445555555444332              367788878776543


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 027530          139 IK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ..       ...++.|++|.+--+.
T Consensus        69 ~~~~~~~~~~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           69 IQNFFAEIKAENLAIDILVNNAGIT   93 (247)
T ss_dssp             HHHHHHHHHHTTCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1235789998775443

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=90.30  E-value=0.66  Score=36.90  Aligned_cols=80  Identities=14%  Similarity=0.094  Sum_probs=50.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dv~~~~   84 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--------------VEADGRTCDVRSVP   84 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEECCCCCHH
Confidence            3578899999987664   23345566999999997 444444444443322              35677787877654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-+..|++|.+--+
T Consensus        85 ~v~~~~~~~~~~~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           85 EIEALVAAVVERYGPVDVLVNNAGR  109 (277)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            321       112478999876443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.28  E-value=0.92  Score=37.36  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=54.7

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+..               .+.    .+.+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------------~v~----~~~~  229 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK---------------HFY----TDPK  229 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS---------------EEE----SSGG
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC---------------eec----CCHH
Confidence            345788999999986 777776665 4889999997 556665543    2311               111    1111


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .   ....+|+|+-+  .-..    ..+....++++++|++++..
T Consensus       230 ~---~~~~~D~vid~--~g~~----~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          230 Q---CKEELDFIIST--IPTH----YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             G---CCSCEEEEEEC--CCSC----CCHHHHHTTEEEEEEEEECC
T ss_pred             H---HhcCCCEEEEC--CCcH----HHHHHHHHHHhcCCEEEEEC
Confidence            1   12278888743  2111    24555667788888877653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.24  E-value=1  Score=35.30  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=49.5

Q ss_pred             CCCCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           60 PSKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        60 ~~~~~~~~vLelGcG--~G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      ....++++||=.|++  .|+   ++..+++.|++|++++.. ...+.+++-....               ..+.+...|.
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~Dv   73 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---------------GSELVFPCDV   73 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---------------TCCCEEECCT
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---------------CCcEEEECCC
Confidence            356788999999976  454   334455679999999874 3334433332322               2356777777


Q ss_pred             CCCcccc-------ccCCCccEEEEeccc
Q 027530          134 GNEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       134 ~~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .+.....       ..-++.|++|.+--+
T Consensus        74 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           74 ADDAQIDALFASLKTHWDSLDGLVHSIGF  102 (271)
T ss_dssp             TCHHHHHHHHHHHHHHCSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            7654321       112478999876443

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=90.18  E-value=0.33  Score=38.90  Aligned_cols=80  Identities=26%  Similarity=0.273  Sum_probs=51.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...              ..++.+...|..+..
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~   70 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG--------------GGEAAALAGDVGDEA   70 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--------------TCCEEECCCCTTCHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCcEEEEECCCCCHH
Confidence            4678999999988775   33455567999999997 44555444444321              246777777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        71 ~v~~~~~~~~~~~g~iD~lvnnAg~   95 (280)
T 3tox_A           71 LHEALVELAVRRFGGLDTAFNNAGA   95 (280)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       12479999877543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.15  E-value=0.79  Score=35.86  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec--C
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW--G  134 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~--~  134 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             ...+.+...|.  .
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~   74 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET-------------GRQPQWFILDLLTC   74 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------SCCCEEEECCTTTC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-------------CCCceEEEEecccC
Confidence            45788999999988765   33445567999999997 455555555444333             12556777776  4


Q ss_pred             CCcccc-------ccCCCccEEEEeccc
Q 027530          135 NEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       135 ~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      +.....       ..-++.|++|.+--+
T Consensus        75 ~~~~~~~~~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           75 TSENCQQLAQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            332211       113579999877543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.10  E-value=0.77  Score=36.40  Aligned_cols=81  Identities=23%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+.+.+...+              .
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~   74 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--------------S   74 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--------------C
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--------------C
Confidence            45688999999987765   334556679999999853             23333333333222              4


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus        75 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            67888888876543221       12479999877544

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=90.04  E-value=0.7  Score=36.37  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+...              ..++.+...|..+..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~   69 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--------------GVEARSYVCDVTSEE   69 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--------------TSCEEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEecCCCHH
Confidence            3578899999987765   23345566999999997 44455444444322              135777787877654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-+..|++|.+--
T Consensus        70 ~~~~~~~~~~~~~g~id~lv~nAg   93 (262)
T 1zem_A           70 AVIGTVDSVVRDFGKIDFLFNNAG   93 (262)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            3210       1247899987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.03  E-value=0.79  Score=38.58  Aligned_cols=99  Identities=26%  Similarity=0.232  Sum_probs=58.1

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||-+|||. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.                .+  .+..+.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----------------~~--i~~~~~  239 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----------------ET--IDLRNS  239 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----------------EE--EETTSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----------------cE--EcCCCc
Confidence            345788999999986 887777775 588 8999997 455555432    121                11  222221


Q ss_pred             cc----cc--ccCCCccEEEEeccccC--------ccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DH----IK--AVAPPFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~----~~--~~~~~fD~Ii~~d~~y~--------~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +.    ..  .....||+|+-+---..        .......+....++|+++|++++.
T Consensus       240 ~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          240 APLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             chHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            11    00  11236999985422100        001223677778889999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.96  E-value=0.054  Score=44.87  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++-  . .                 .  ..+..+.+. 
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a-~-----------------~--v~~~~~~~~~  221 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A-D-----------------R--LVNPLEEDLL  221 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C-S-----------------E--EECTTTSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H-H-----------------h--ccCcCccCHH
Confidence            889999999965 666666665 588 8999997 4444433321  0 0                 0  112221110 


Q ss_pred             --cc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 --IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 --~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                        .. .....+|+|+-+--      ....++...++++++|++++.
T Consensus       222 ~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          222 EVVRRVTGSGVEVLLEFSG------NEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHHHHHHSSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence              00 01346999985421      134567777888999987764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=89.95  E-value=1.8  Score=34.49  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=48.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-  135 (222)
                      .++++++|=.|++.|+   ++..+++.|++|++++. + +.++.+.+.+....             ..++.+...|..+ 
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dv~~~   86 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-------------SNTAVVCQADLTNS   86 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-------------TTCEEEEECCCSCS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-------------CCceEEEEeecCCc
Confidence            4678899999988765   33345567999999987 4 54444444333111             1367778888776 


Q ss_pred             ---Cccccc-------cCCCccEEEEeccc
Q 027530          136 ---EDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ---~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                         ......       .-++.|++|.+--+
T Consensus        87 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           87 NVLPASCEEIINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             TTHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence               322110       12478999876443

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=89.93  E-value=0.78  Score=35.75  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+++++||=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~   75 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--------------HDVSSVVMDVTNTE   75 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEecCCCHH
Confidence            3578899999987654   22334456999999997 444444444443222              35778887877654


Q ss_pred             ccccc-------CCCccEEEEecc
Q 027530          138 HIKAV-------APPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~~-------~~~fD~Ii~~d~  154 (222)
                      .....       .++.|+||.+--
T Consensus        76 ~~~~~~~~~~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           76 SVQNAVRSVHEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            32211       147899987643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=89.88  E-value=0.74  Score=36.10  Aligned_cols=80  Identities=13%  Similarity=0.144  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~   75 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--------------LSVTGTVCHVGKA   75 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CceEEEEccCCCH
Confidence            34678899999987664   22344556999999997 444444444443222              3567777777665


Q ss_pred             ccccc-------cCCCccEEEEecc
Q 027530          137 DHIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~  154 (222)
                      .....       .-+..|++|.+--
T Consensus        76 ~~~~~~~~~~~~~~g~iD~lv~~Ag  100 (260)
T 2zat_A           76 EDRERLVAMAVNLHGGVDILVSNAA  100 (260)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            43211       1147899987643

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=89.85  E-value=0.79  Score=36.13  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+....            ...++.+...|..+.+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~   77 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA------------PDAEVLTTVADVSDEA   77 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC------------TTCCEEEEECCTTSHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEEccCCCHH
Confidence            4678999999987764   33345566999999997 444444444443221            0135777787877654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-++.|++|.+--
T Consensus        78 ~v~~~~~~~~~~~g~id~lv~nAg  101 (267)
T 1iy8_A           78 QVEAYVTATTERFGRIDGFFNNAG  101 (267)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1247899987643

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=89.84  E-value=1.2  Score=34.97  Aligned_cols=77  Identities=17%  Similarity=0.330  Sum_probs=48.3

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+...
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~~   68 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--------------GQCVPVVCDSSQESE   68 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--------------SEEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--------------CceEEEECCCCCHHH
Confidence            467889999987664   23345566999999987 444444444443222              356777878776543


Q ss_pred             ccc--------cCCCccEEEEec
Q 027530          139 IKA--------VAPPFDYIIGTD  153 (222)
Q Consensus       139 ~~~--------~~~~fD~Ii~~d  153 (222)
                      ...        ..++.|++|.+-
T Consensus        69 v~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           69 VRSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHHhcCCCceEEEECC
Confidence            210        135789999775

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.66  E-value=0.54  Score=37.02  Aligned_cols=81  Identities=25%  Similarity=0.352  Sum_probs=52.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+++++||=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+              .++.+...|..+.
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   90 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--------------GEAESHACDLSHS   90 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTCH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--------------CceeEEEecCCCH
Confidence            34678999999987664   22344556999999997 445555555554332              3677888787765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      +....       ..++.|++|.+--+
T Consensus        91 ~~v~~~~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           91 DAIAAFATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            43211       12478999877544

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=89.61  E-value=0.81  Score=35.43  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=50.9

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeec--
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDW--  133 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~--  133 (222)
                      +..++|+++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             ...+.+...|.  
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~d~   75 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-------------QPQPLIIALNLEN   75 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------SCCCEEEECCTTT
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-------------CCCceEEEecccc
Confidence            456789999999987764   23445567999999997 455665555555433             13456666555  


Q ss_pred             CCCcccc-------ccCCCccEEEEeccc
Q 027530          134 GNEDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       134 ~~~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .+.....       ..-++.|++|.+--+
T Consensus        76 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           76 ATAQQYRELAARVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            3222111       112478999877544

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=89.56  E-value=0.81  Score=35.94  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+....             ..++.+...|..+.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~D~~~~~   70 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-------------GVRVLEVAVDVATPE   70 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------CCCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence            3578899999987664   23344556999999997 444444444343220             135677787877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-+..|++|.+--+
T Consensus        71 ~~~~~~~~~~~~~g~id~lv~~Ag~   95 (263)
T 3ai3_A           71 GVDAVVESVRSSFGGADILVNNAGT   95 (263)
T ss_dssp             HHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       11378999877543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.50  E-value=2.3  Score=33.74  Aligned_cols=77  Identities=26%  Similarity=0.342  Sum_probs=49.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+   +              ..+.+...|..+..
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dv~d~~   88 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--------------CGAAACRVDVSDEQ   88 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--------------SSCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--------------CcceEEEecCCCHH
Confidence            4678999999988775   34456667999999997 44444333322   1              35677777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        89 ~v~~~~~~~~~~~g~iD~lvnnAg~  113 (277)
T 3gvc_A           89 QIIAMVDACVAAFGGVDKLVANAGV  113 (277)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       12478999877544

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=89.44  E-value=1.8  Score=36.47  Aligned_cols=136  Identities=15%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             EeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEe-cc
Q 027530           16 LEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT-DQ   94 (222)
Q Consensus        16 ~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~-D~   94 (222)
                      +++.+..+-  ..|+..++..   |+..+|.+++..            .+.+||.++-+.|.+++.++. +.+|+.+ |.
T Consensus        14 ~~~~~~~~~--~~~~~~~~~~---~~~~~l~~~~~~------------~~~~~l~~n~~~g~~~~~~~~-~~~~~~~~~~   75 (381)
T 3dmg_A           14 LPHPGGRLF--IKPGARGYRD---PVHDLLQKTVEP------------FGERALDLNPGVGWGSLPLEG-RMAVERLETS   75 (381)
T ss_dssp             EEETTEEEE--ECTTCSSSSC---HHHHHHHTTCCC------------CSSEEEESSCTTSTTTGGGBT-TBEEEEEECB
T ss_pred             ccCCCCcee--ecCCCCCCCC---hHHHHHHHHHHH------------hCCcEEEecCCCCccccccCC-CCceEEEeCc
Confidence            344444333  4454444432   566666665532            235899999999987766642 3566654 53


Q ss_pred             -hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccC-ccCHHHHHHHHHHhc
Q 027530           95 -IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALS  172 (222)
Q Consensus        95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~-~~~~~~ll~~~~~~l  172 (222)
                       +. ...    ++.|+..              .. ....|.      .....||+|+.--+-.. .......+..+...|
T Consensus        76 ~~~-~~~----l~~~~~~--------------~~-~~~~~~------~~~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l  129 (381)
T 3dmg_A           76 RAA-FRC----LTASGLQ--------------AR-LALPWE------AAAGAYDLVVLALPAGRGTAYVQASLVAAARAL  129 (381)
T ss_dssp             HHH-HHH----HHHTTCC--------------CE-ECCGGG------SCTTCEEEEEEECCGGGCHHHHHHHHHHHHHHE
T ss_pred             HHH-HHH----HHHcCCC--------------cc-ccCCcc------CCcCCCCEEEEECCcchhHHHHHHHHHHHHHhC
Confidence             22 111    6677753              11 111121      23568999885433210 113456778888889


Q ss_pred             CCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          173 GPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       173 ~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      +|||.++++..++..  .+.+...+
T Consensus       130 ~~g~~i~~~g~~~~g--~~~~~~~~  152 (381)
T 3dmg_A          130 RMGGRLYLAGDKNKG--FERYFKEA  152 (381)
T ss_dssp             EEEEEEEEEEEGGGT--HHHHHHHH
T ss_pred             CCCCEEEEEEccHHH--HHHHHHHH
Confidence            999999999877654  34555544

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.44  E-value=2.8  Score=35.43  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=27.1

Q ss_pred             CeEEEeCCCccHHHHHHHHh---------CCEEEEecchhhHHHHHH
Q 027530           66 KRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKR  103 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~---------g~~v~~~D~~~~l~~~~~  103 (222)
                      -+|+|+|+|.|.+..-+.+.         ..+++.+|.+..+...++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  128 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHH
Confidence            46999999999887654421         127999999765555544

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=89.29  E-value=1  Score=35.54  Aligned_cols=83  Identities=11%  Similarity=-0.018  Sum_probs=53.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+....            ...++.+...|..+.
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dv~~~   71 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF------------PGARLFASVCDVLDA   71 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS------------TTCCEEEEECCTTCH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCceEEEEeCCCCCH
Confidence            45788999999998875   33445567999999997 455555555554311            013477788787765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-++.|++|.+--+
T Consensus        72 ~~v~~~~~~~~~~~g~id~lvnnAg~   97 (265)
T 3lf2_A           72 LQVRAFAEACERTLGCASILVNNAGQ   97 (265)
T ss_dssp             HHHHHHHHHHHHHHCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4321       112478999877544

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=89.23  E-value=0.45  Score=41.51  Aligned_cols=41  Identities=29%  Similarity=0.316  Sum_probs=34.1

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027530           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (222)
                      ..+++||.||.|-+++.+.+.|.+ |.++|. +.+.+..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            458999999999999999889987 778998 55777777665

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=89.22  E-value=0.7  Score=36.85  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+++++||=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+...+             ..++.+...|..+.
T Consensus        24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~d~   90 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-------------AASAHYIAGTMEDM   90 (286)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-------------CSEEEEEECCTTCH
T ss_pred             hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-------------CCceEEEeCCCCCH
Confidence            346788999999876542   2334456999999997 445554444443322             12567778777764


Q ss_pred             ccccc-------cCCCccEEEEe
Q 027530          137 DHIKA-------VAPPFDYIIGT  152 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~  152 (222)
                      .....       .-+..|++|.+
T Consensus        91 ~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           91 TFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEC
Confidence            33211       11479999966

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=89.18  E-value=0.84  Score=36.29  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~Dv~~~~   76 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA-----------NGGAIRYEPTDITNED   76 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC-----------SSCEEEEEECCTTSHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEeCCCCCHH
Confidence            4678999999987765   33445567999999997 4555555555543221           1236778888877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        77 ~v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           77 ETARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            3211       12478999876543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.16  E-value=0.66  Score=36.98  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...              ..++.+...|..+.
T Consensus        20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dv~d~   85 (279)
T 3sju_A           20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA--------------GHDVDGSSCDVTST   85 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--------------TCCEEEEECCTTCH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEECCCCCH
Confidence            34567899999988765   33455567999999997 44555554444432              24678888887765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-++.|++|.+--+
T Consensus        86 ~~v~~~~~~~~~~~g~id~lv~nAg~  111 (279)
T 3sju_A           86 DEVHAAVAAAVERFGPIGILVNSAGR  111 (279)
T ss_dssp             HHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCcEEEECCCC
Confidence            43211       12478999876544

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.14  E-value=0.63  Score=37.25  Aligned_cols=80  Identities=16%  Similarity=0.197  Sum_probs=50.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...              ..++.+...|..+..
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dv~d~~   90 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA--------------GGQAIALEADVSDEL   90 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--------------TCCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCcEEEEEccCCCHH
Confidence            3567899999988775   33445567999999997 44555444444321              246778888877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        91 ~v~~~~~~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           91 QMRNAVRDLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            3211       12479999876443

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=89.10  E-value=0.76  Score=35.67  Aligned_cols=79  Identities=24%  Similarity=0.323  Sum_probs=47.8

Q ss_pred             CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+++++||=.|++.| +|..    +++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.
T Consensus         8 ~~~~~~vlVtGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   72 (255)
T 1fmc_A            8 RLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------------GQAFACRCDITSE   72 (255)
T ss_dssp             CCTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred             CCCCCEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--------------CceEEEEcCCCCH
Confidence            357889998887654 3443    3445889999997 444444444443222              3567777777765


Q ss_pred             cccccc-------CCCccEEEEeccc
Q 027530          137 DHIKAV-------APPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~~-------~~~fD~Ii~~d~~  155 (222)
                      ......       .+++|+||.+--+
T Consensus        73 ~~~~~~~~~~~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           73 QELSALADFAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            432211       1378999876443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=89.07  E-value=1  Score=35.67  Aligned_cols=82  Identities=18%  Similarity=0.271  Sum_probs=49.9

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+....             ..++.+...|..+.
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~~   83 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-------------GVETMAFRCDVSNY   83 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------CCCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCH
Confidence            45688999999987664   23345566999999987 444444444331111             13567777777765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-+..|++|.+--+
T Consensus        84 ~~v~~~~~~~~~~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           84 EEVKKLLEAVKEKFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            43211       12478999876443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.05  E-value=0.64  Score=38.15  Aligned_cols=95  Identities=23%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||=.|+|. |..++.+++ +|++ ++++|. ++-++.+++    .+..               .+  .+..+.
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---------------~~--i~~~~~  215 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---------------QT--FNSSEM  215 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---------------EE--EETTTS
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---------------EE--EeCCCC
Confidence            455788999999986 666666665 4765 688887 445555443    2321               11  122221


Q ss_pred             ccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ...     ......+|+|+-+-      -....++...++++++|++.+..
T Consensus       216 ~~~~~~~~~~~~~g~d~v~d~~------G~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          216 SAPQMQSVLRELRFNQLILETA------GVPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             CHHHHHHHHGGGCSSEEEEECS------CSHHHHHHHHHHCCTTCEEEECC
T ss_pred             CHHHHHHhhcccCCcccccccc------cccchhhhhhheecCCeEEEEEe
Confidence            100     01234678877431      12456777788899999887654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=89.03  E-value=0.74  Score=36.79  Aligned_cols=82  Identities=22%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++|+++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             ...+.+...|..+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~   95 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-------------GNIVRAVVCDVGDP   95 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------SSCEEEEECCTTCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCeEEEEEcCCCCH
Confidence            34678999999988765   33345566999999997 455555555444333             12457788887765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      +....       .-++.|++|.+--+
T Consensus        96 ~~v~~~~~~~~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A           96 DQVAALFAAVRAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            43211       12478999876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.97  E-value=0.98  Score=36.83  Aligned_cols=82  Identities=21%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.+++||=-|++.|+   +...+++.|++|++++. .+.++.+.+.+...+.            ..++.+..+|..+..
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~------------~~~~~~~~~Dl~~~~   72 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS------------GPEVMGVQLDVASRE   72 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------GGGEEEEECCTTCHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCeEEEEECCCCCHH
Confidence            4678899999998775   33345566999999997 4556655555554331            236788888887654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-+..|++|.+--+
T Consensus        73 ~v~~~~~~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           73 GFKMAADEVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCc
Confidence            321       112578999877543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=88.92  E-value=2.7  Score=29.38  Aligned_cols=70  Identities=21%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++|+=+|||. |. ++..+...|.+|+++|. ++.++.+++    .                .+.+..+|..+...+..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~----------------~~~~~~gd~~~~~~l~~   65 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----E----------------GFDAVIADPTDESFYRS   65 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----------------TCEEEECCTTCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C----------------CCcEEECCCCCHHHHHh
Confidence            46899999974 32 22334455889999998 444444332    1                23455555544332221


Q ss_pred             -cCCCccEEEEecc
Q 027530          142 -VAPPFDYIIGTDV  154 (222)
Q Consensus       142 -~~~~fD~Ii~~d~  154 (222)
                       .-..+|+|+.+-.
T Consensus        66 ~~~~~~d~vi~~~~   79 (141)
T 3llv_A           66 LDLEGVSAVLITGS   79 (141)
T ss_dssp             SCCTTCSEEEECCS
T ss_pred             CCcccCCEEEEecC
Confidence             1357899887643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.83  E-value=0.75  Score=36.57  Aligned_cols=81  Identities=21%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+...
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dv~~~~~   72 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV-----------SEKQVNSVVADVTTEDG   72 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-----------CGGGEEEEECCTTSHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcceEEEEecCCCHHH
Confidence            567899999987764   33345566999999997 4455544444432220           01257788888876543


Q ss_pred             ccc-------cCCCccEEEEecc
Q 027530          139 IKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~  154 (222)
                      ...       .-++.|++|.+--
T Consensus        73 v~~~~~~~~~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           73 QDQIINSTLKQFGKIDVLVNNAG   95 (280)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            211       1147899987643

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=88.82  E-value=1.2  Score=34.90  Aligned_cols=79  Identities=16%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+++++||=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+...+              .++.+...|..+..
T Consensus        11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   76 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--------------FQVTGSVCDASLRP   76 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CeeEEEECCCCCHH
Confidence            35788999998866542   2334456999999987 444444444443222              35677777776543


Q ss_pred             ccccc--------CCCccEEEEecc
Q 027530          138 HIKAV--------APPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~~--------~~~fD~Ii~~d~  154 (222)
                      .....        .++.|++|.+--
T Consensus        77 ~~~~~~~~~~~~~~~~id~li~~Ag  101 (266)
T 1xq1_A           77 EREKLMQTVSSMFGGKLDILINNLG  101 (266)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCC
Confidence            32110        157899987643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=88.81  E-value=1.1  Score=36.07  Aligned_cols=81  Identities=25%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+.+.+...              ..
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   89 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--------------GR   89 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--------------TC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--------------CC
Confidence            35688999999998875   334566679999998853             2333333333322              24


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus        90 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A           90 RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            67888888876543211       12479999876443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=88.78  E-value=0.99  Score=35.93  Aligned_cols=81  Identities=25%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-----------------hhHHHHHHHHHHhhccccccCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------------EVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-----------------~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..                 +.++.+.+.+...            
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   74 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------------   74 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------------
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------------
Confidence            35688999999998875   344556679999998853                 2233222222211            


Q ss_pred             CCCCceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          121 NLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                        ..++.+...|..+.+....       .-++.|++|.+--+
T Consensus        75 --~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           75 --NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             --TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             --CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence              2467888888876543221       12479999877543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=88.77  E-value=1  Score=35.73  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=50.2

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|..             +.++...+.+...              ..
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   71 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--------------GR   71 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--------------TC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--------------CC
Confidence            45688999999988775   334455679999999863             2233332323222              24


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus        72 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           72 RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            67888888776543221       12479999876544

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.73  E-value=0.96  Score=35.94  Aligned_cols=81  Identities=22%  Similarity=0.220  Sum_probs=51.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--------------hhhHHHHHHHHHHhhccccccCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSGNLL  123 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|.              .+.++.+.+.+...              .
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~   76 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--------------G   76 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--------------T
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--------------C
Confidence            45788999999998775   33455667999999885              22333333333322              2


Q ss_pred             CceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          124 GSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       124 ~~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .++.+...|..+......       .-++.|++|.+--+
T Consensus        77 ~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           77 RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            467788888776543221       12479999877544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.63  E-value=3.9  Score=29.98  Aligned_cols=39  Identities=21%  Similarity=0.116  Sum_probs=25.8

Q ss_pred             CCCCCeEEEeCCCc-cH-HHHHHHHh-CCEEEEecc-hhhHHH
Q 027530           62 KLKGKRVIELGAGC-GV-AGFGMALL-GCNVITTDQ-IEVLPL  100 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~-~~i~la~~-g~~v~~~D~-~~~l~~  100 (222)
                      ...+.+|+=+|+|. |. ++..|... |.+|+++|. ++.++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence            34567899999874 43 23344456 889999998 444443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.41  E-value=2  Score=35.27  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=24.7

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCC-EEEEecch
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGC-NVITTDQI   95 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~-~v~~~D~~   95 (222)
                      ...+++++|=+|+| |.   +...++..|+ +|+.++..
T Consensus       150 ~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          150 HDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECC
Confidence            45688999999998 43   3345566788 78888763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.25  E-value=4  Score=32.76  Aligned_cols=40  Identities=30%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~  105 (222)
                      ++|.=||+|. |. ++..+++.|.+|++.|. ++.++.+++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i   58 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI   58 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            5799999996 54 66667778999999998 55666654433

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=88.16  E-value=0.37  Score=39.63  Aligned_cols=43  Identities=2%  Similarity=0.094  Sum_probs=33.3

Q ss_pred             CCCccEEEEeccccCcc--------------CHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          143 APPFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~--------------~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +++||+|+..+++....              ....+++.+.++|+|+|.+++....+
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            57899999988864431              35677888899999999999976543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.12  E-value=0.8  Score=35.56  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +...++++||=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+.                 .++.+...|..+
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~~D~~~   71 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----------------DNYTIEVCNLAN   71 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------------SSEEEEECCTTS
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----------------cCccEEEcCCCC
Confidence            456788999999988765   33445567999999997 444443333221                 256667766665


Q ss_pred             Ccccc---ccCCCccEEEEeccc
Q 027530          136 EDHIK---AVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~---~~~~~fD~Ii~~d~~  155 (222)
                      .....   ....+.|++|.+--+
T Consensus        72 ~~~~~~~~~~~~~id~li~~Ag~   94 (249)
T 3f9i_A           72 KEECSNLISKTSNLDILVCNAGI   94 (249)
T ss_dssp             HHHHHHHHHTCSCCSEEEECCC-
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            43221   112478999876543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=88.06  E-value=1.1  Score=36.45  Aligned_cols=81  Identities=23%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+.+.+...              ..
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~  107 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--------------GR  107 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--------------TC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--------------CC
Confidence            35688999999998775   334556679999998752             2233332323222              24


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus       108 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          108 RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            67888888776543221       12479999877443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.06  E-value=1.6  Score=36.13  Aligned_cols=42  Identities=19%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~  103 (222)
                      ..+|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            45788999999975 776666665 5899999997 556666654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=87.99  E-value=1.7  Score=36.49  Aligned_cols=99  Identities=21%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||-+|||. |+.++.+|+ +|+ +|+++|. ++-++.+++    .+.                ++  .+..+.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----------------~~--i~~~~~  239 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----------------EI--ADLSLD  239 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----------------EE--EETTSS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----------------cE--EccCCc
Confidence            345788999999986 888877776 488 6999997 555555543    221                11  222221


Q ss_pred             cc----cc--ccCCCccEEEEeccc---------cCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DH----IK--AVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~----~~--~~~~~fD~Ii~~d~~---------y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ..    ..  .....+|+|+-+--.         ++.......+....++++++|++++.
T Consensus       240 ~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          240 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             chHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            10    10  112469999854221         11122234677788889999988764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=87.89  E-value=1.5  Score=35.04  Aligned_cols=79  Identities=11%  Similarity=0.175  Sum_probs=45.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+++++|=+|+..|+   +...+++.|++|+.++. .+-.+.+.+.+....               .+.+...|+.+.+
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~---------------~~~~~~~D~~~~~  180 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---------------KVNVTAAETADDA  180 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---------------TCCCEEEECCSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEecCCCHH
Confidence            3578999999954443   33455667999999987 343333333332211               2344556666543


Q ss_pred             cccccCCCccEEEEeccc
Q 027530          138 HIKAVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~  155 (222)
                      .....-..+|+||.+-.+
T Consensus       181 ~~~~~~~~~DvlVn~ag~  198 (287)
T 1lu9_A          181 SRAEAVKGAHFVFTAGAI  198 (287)
T ss_dssp             HHHHHTTTCSEEEECCCT
T ss_pred             HHHHHHHhCCEEEECCCc
Confidence            332223458999977643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=87.85  E-value=1  Score=35.65  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+.++. + +.++.+.+.+...+              .++.+...|..+.
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~d~   90 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--------------GEAFAVKADVSQE   90 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--------------CcEEEEECCCCCH
Confidence            4678999999988765   33455667999998886 3 34555544444322              3677788887765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-++.|++|.+--+
T Consensus        91 ~~v~~~~~~~~~~~g~id~lv~nAg~  116 (269)
T 4dmm_A           91 SEVEALFAAVIERWGRLDVLVNNAGI  116 (269)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            43221       12478999877544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.83  E-value=1.1  Score=35.34  Aligned_cols=82  Identities=22%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.....            ...+.....|..+..
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~------------~~~~~~~~~D~~~~~   74 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP------------DAILQPVVADLGTEQ   74 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT------------TCEEEEEECCTTSHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC------------CceEEEEecCCCCHH
Confidence            4678999999987765   33445567999999997 4455555444443321            235666777766543


Q ss_pred             ccc---ccCCCccEEEEeccc
Q 027530          138 HIK---AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~---~~~~~fD~Ii~~d~~  155 (222)
                      ...   ..-++.|++|.+--+
T Consensus        75 ~~~~~~~~~g~id~lv~nAg~   95 (267)
T 3t4x_A           75 GCQDVIEKYPKVDILINNLGI   95 (267)
T ss_dssp             HHHHHHHHCCCCSEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence            221   112478999876544

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=87.82  E-value=0.75  Score=35.89  Aligned_cols=77  Identities=22%  Similarity=0.329  Sum_probs=48.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +              .++.+...|..+..
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dv~~~~   65 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G--------------KKARAIAADISDPG   65 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--------------TTEEECCCCTTCHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CceEEEEcCCCCHH
Confidence            4678999999988765   33455667999999997 44443333222   1              35677777776654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        66 ~v~~~~~~~~~~~g~id~lv~nAg~   90 (247)
T 3rwb_A           66 SVKALFAEIQALTGGIDILVNNASI   90 (247)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCC
Confidence            3211       12479999876544

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=87.80  E-value=1.2  Score=34.77  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+.....           ...++.+...|..+..
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dv~~~~   72 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK-----------HVQEPIVLPLDITDCT   72 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT-----------TSCCCEEEECCTTCHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc-----------ccCcceEEeccCCCHH
Confidence            3567899999998775   33455567999999997 4555555555543310           1146777888877654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        73 ~v~~~~~~~~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           73 KADTEIKDIHQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCc
Confidence            3211       12479999877544

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.80  E-value=0.96  Score=35.55  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEe-cc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++ +. .+..+.+.+.+...              ..++.+...|..+.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~   70 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--------------GRSALAIKADLTNA   70 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--------------TSCCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--------------CCceEEEEcCCCCH
Confidence            4678999999998775   334555679999888 44 34444444444422              24577788787765


Q ss_pred             ccccc-------cCCCccEEEEec
Q 027530          137 DHIKA-------VAPPFDYIIGTD  153 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d  153 (222)
                      .....       .-++.|++|.+-
T Consensus        71 ~~v~~~~~~~~~~~g~id~lv~nA   94 (259)
T 3edm_A           71 AEVEAAISAAADKFGEIHGLVHVA   94 (259)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECC
Confidence            43221       124789998764

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=87.62  E-value=1.4  Score=35.24  Aligned_cols=62  Identities=16%  Similarity=0.079  Sum_probs=39.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHH-HhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVE-WNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D-~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++| . .+.++.+.+.+. ..+              .++.+...|..+
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--------------~~~~~~~~Dl~~   71 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--------------NSAITVQADLSN   71 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--------------TCEEEEECCCSS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--------------CeeEEEEeecCC
Confidence            3578899999988764   2334556699999999 7 445554444443 211              356777878776


Q ss_pred             Cc
Q 027530          136 ED  137 (222)
Q Consensus       136 ~~  137 (222)
                      ..
T Consensus        72 ~~   73 (291)
T 1e7w_A           72 VA   73 (291)
T ss_dssp             SC
T ss_pred             cc
Confidence            55

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.61  E-value=0.95  Score=36.35  Aligned_cols=77  Identities=22%  Similarity=0.247  Sum_probs=50.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||.+|=-|++.|+   ++..+++.|++|+.+|. .+.++.+.+.+   +              .++.....|..+..
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--------------~~~~~~~~Dv~~~~   88 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--------------GGAVGIQADSANLA   88 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------------TTCEEEECCTTCHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--------------CCeEEEEecCCCHH
Confidence            4789999999999885   44566677999999998 55555443322   1              24566677776654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.|--+
T Consensus        89 ~v~~~~~~~~~~~G~iDiLVNNAG~  113 (273)
T 4fgs_A           89 ELDRLYEKVKAEAGRIDVLFVNAGG  113 (273)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            321       112578998876433

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=87.59  E-value=1.2  Score=34.92  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhh--HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV--LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        65 ~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++|=.|++.|+   +...+++.|++|+++|. ++.  ++.+.+.+...              ..++.+...|..+...
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~   67 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--------------DQKAVFVGLDVTDKAN   67 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--------------TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--------------CCcEEEEEccCCCHHH
Confidence            5788888987664   33345567999999987 333  44444333321              2357778888776543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       .-++.|++|.+--+
T Consensus        68 v~~~~~~~~~~~g~iD~lv~nAg~   91 (258)
T 3a28_C           68 FDSAIDEAAEKLGGFDVLVNNAGI   91 (258)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            211       11478999876443

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=87.50  E-value=1.1  Score=35.14  Aligned_cols=80  Identities=13%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhh-HHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV-LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++. ++.+.+.+....             ..++.+...|..+..
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   68 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-------------GVKVLYDGADLSKGE   68 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-------------TSCEEEECCCTTSHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-------------CCcEEEEECCCCCHH
Confidence            357889999987664   23345566999999997 443 554444443220             125677777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        69 ~v~~~~~~~~~~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           69 AVRGLVDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            3211       11478999876443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=87.47  E-value=1.2  Score=34.72  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.....
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~v~   67 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--------------GHAVAVKVDVSDRDQVF   67 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcEEEEEecCCCHHHHH
Confidence            4678888877664   23345566999999997 444444444443222              35677787877654321


Q ss_pred             c-------cCCCccEEEEecc
Q 027530          141 A-------VAPPFDYIIGTDV  154 (222)
Q Consensus       141 ~-------~~~~fD~Ii~~d~  154 (222)
                      .       .-++.|++|.+--
T Consensus        68 ~~~~~~~~~~g~id~lv~nAg   88 (256)
T 1geg_A           68 AAVEQARKTLGGFDVIVNNAG   88 (256)
T ss_dssp             HHHHHHHHHTTCCCEEEECCC
T ss_pred             HHHHHHHHHhCCCCEEEECCC
Confidence            1       1247999987643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.39  E-value=0.8  Score=38.21  Aligned_cols=41  Identities=37%  Similarity=0.488  Sum_probs=28.3

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHH
Q 027530           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~  103 (222)
                      .++++||=+|+|. |...+.++ .+|++|+++|. ++-++.+++
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~  208 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET  208 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            4568999999975 55444433 46889999997 555555543

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=87.34  E-value=1.3  Score=34.96  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|++++. ++.++.+.+.+....           ....++.+...|..+...
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~D~~~~~~   72 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG-----------VSEQNVNSVVADVTTDAG   72 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------CCGGGEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-----------cCCCceeEEecccCCHHH
Confidence            467889999987664   23345566999999997 444444444332111           012367778878776543


Q ss_pred             cccc-------CCCccEEEEecc
Q 027530          139 IKAV-------APPFDYIIGTDV  154 (222)
Q Consensus       139 ~~~~-------~~~fD~Ii~~d~  154 (222)
                      ....       -+..|++|.+--
T Consensus        73 ~~~~~~~~~~~~g~id~lv~~Ag   95 (278)
T 1spx_A           73 QDEILSTTLGKFGKLDILVNNAG   95 (278)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            2211       137899987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=87.33  E-value=4.9  Score=28.14  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=48.9

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc-
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA-  141 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  141 (222)
                      .+|+=+|||. |. ++..|...|.+|+++|. ++.++.+++    .+                +.+..+|-.+.+.+.. 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----------------~~~i~gd~~~~~~l~~a   67 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----------------VRAVLGNAANEEIMQLA   67 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----------------CEEEESCTTSHHHHHHT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----------------CCEEECCCCCHHHHHhc
Confidence            4788899874 43 33344456889999998 555554432    22                3445544443322221 


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      .-..+|+|+.+-.-   +.....+-...+.+.|+..++.
T Consensus        68 ~i~~ad~vi~~~~~---~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           68 HLECAKWLILTIPN---GYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             TGGGCSEEEECCSC---HHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CcccCCEEEEECCC---hHHHHHHHHHHHHHCCCCeEEE
Confidence            12478988865221   1112223333445677776443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=87.30  E-value=1.6  Score=29.20  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=40.3

Q ss_pred             CCCeEEEeCCCccHHHHHH----HHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCGVAGFGM----ALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~l----a~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+++|+=+|+|  ..|..+    .+.| .+|+++|. ++.++.+.    .                ..+.+...|..+..
T Consensus         4 ~~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----------------~~~~~~~~d~~~~~   61 (118)
T 3ic5_A            4 MRWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----------------MGVATKQVDAKDEA   61 (118)
T ss_dssp             TCEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----------------TTCEEEECCTTCHH
T ss_pred             CcCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----------------CCCcEEEecCCCHH
Confidence            35689999994  445443    3457 68999997 44333332    1                13455565655543


Q ss_pred             cccccCCCccEEEEecc
Q 027530          138 HIKAVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~  154 (222)
                      .....-..+|+||.+-.
T Consensus        62 ~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A           62 GLAKALGGFDAVISAAP   78 (118)
T ss_dssp             HHHHHTTTCSEEEECSC
T ss_pred             HHHHHHcCCCEEEECCC
Confidence            33222347999987754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.26  E-value=1  Score=35.37  Aligned_cols=77  Identities=22%  Similarity=0.297  Sum_probs=48.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+   +              ..+.+...|..+.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~D~~~~~   67 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--------------PAAYAVQMDVTRQD   67 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------------TTEEEEECCTTCHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CCceEEEeeCCCHH
Confidence            4578899999987764   33445567999999997 44333332222   1              25677777777654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        68 ~v~~~~~~~~~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           68 SIDAAIAATVEHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            321       112479999887544

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=87.26  E-value=0.99  Score=35.21  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=48.2

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                 ..+.+...|..+.+
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~~Dv~d~~   68 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----------------DNGKGMALNVTNPE   68 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----------------GGEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------------ccceEEEEeCCCHH
Confidence            4678999999988765   33455567999999997 444443333222                 23466777776654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        69 ~v~~~~~~~~~~~g~iD~lv~nAg~   93 (248)
T 3op4_A           69 SIEAVLKAITDEFGGVDILVNNAGI   93 (248)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       12479999877544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=87.21  E-value=1.1  Score=35.66  Aligned_cols=78  Identities=15%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.   .+              .++.+...|..+.
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--------------~~~~~~~~Dv~d~   85 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IG--------------SKAFGVRVDVSSA   85 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HC--------------TTEEEEECCTTCH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--------------CceEEEEecCCCH
Confidence            45688999999988775   33445567999999997 4433333222   11              3567777777765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-++.|++|.+--+
T Consensus        86 ~~v~~~~~~~~~~~g~iD~lv~nAg~  111 (277)
T 4dqx_A           86 KDAESMVEKTTAKWGRVDVLVNNAGF  111 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            43211       12478999876543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=87.20  E-value=0.89  Score=36.64  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...+             ..++.+...|..+.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dv~d~  103 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-------------AGNVIGVRLDVSDP  103 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-------------SSCEEEEECCTTCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-------------CCcEEEEEEeCCCH
Confidence            34678999999988765   33445567999999997 455555544443221             13677888887765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ..-++.|++|.+--+
T Consensus       104 ~~v~~~~~~~~~~~g~iD~lvnnAg~  129 (293)
T 3rih_A          104 GSCADAARTVVDAFGALDVVCANAGI  129 (293)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4321       112478999877544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=87.19  E-value=2  Score=35.57  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+..               .+.  +....+
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---------------~vi--~~~~~~  244 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGAD---------------HGI--NRLEED  244 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTCS---------------EEE--ETTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCCC---------------EEE--cCCccc
Confidence            455789999999886 777776665 5889999997 455555433    2211               111  211111


Q ss_pred             c---cc--ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 H---IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~---~~--~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .   ..  .....+|+|+-+--       ...+....+.++++|++++..
T Consensus       245 ~~~~v~~~~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          245 WVERVYALTGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence            0   00  11347999985422       134566667889999887653

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=87.18  E-value=2.9  Score=32.76  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=50.4

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++|. ++..+.+.+.+....            ...++.+...|..+...
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~D~~~~~~   72 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF------------EPQKTLFIQCDVADQQQ   72 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS------------CGGGEEEEECCTTSHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc------------CCCceEEEecCCCCHHH
Confidence            467899999987664   23344556999999997 444443333332110            01357778878776543


Q ss_pred             ccc-------cCCCccEEEEeccccCccCH
Q 027530          139 IKA-------VAPPFDYIIGTDVVYAEHLL  161 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~y~~~~~  161 (222)
                      ...       .-++.|++|.+--+...+.+
T Consensus        73 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~  102 (267)
T 2gdz_A           73 LRDTFRKVVDHFGRLDILVNNAGVNNEKNW  102 (267)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCSSSH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCChhhH
Confidence            211       11468999987554433333

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=87.07  E-value=1.2  Score=36.38  Aligned_cols=93  Identities=16%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             CCC-eEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGK-RVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~-~vLelGc-G~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      +|. +||=.|+ |. |+..+.+++ .|++|++++. ++-++.+++    .+..             . .+..-+......
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~-------------~-v~~~~~~~~~~~  210 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS-------------E-VISREDVYDGTL  210 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS-------------E-EEEHHHHCSSCC
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc-------------E-EEECCCchHHHH
Confidence            454 8999997 53 777766664 5889999997 455666543    2211             0 011001000000


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .......+|+|+-+  .   ..  +.+....+.++++|++++.
T Consensus       211 ~~~~~~~~d~vid~--~---g~--~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          211 KALSKQQWQGAVDP--V---GG--KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CSSCCCCEEEEEES--C---CT--HHHHHHHTTEEEEEEEEEC
T ss_pred             HHhhcCCccEEEEC--C---cH--HHHHHHHHhhcCCCEEEEE
Confidence            01113468988844  2   11  3566777888999988764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=86.86  E-value=5.8  Score=32.12  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~--G~~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      .+|+=+|+|.  +.++..+++.|.+|++.+.++ .    +.+..+++.....      ......+......  .+.....
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~----~~i~~~Gl~~~~~------~~g~~~~~~~~~~--~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-Y----ETVKAKGIRIRSA------TLGDYTFRPAAVV--RSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-H----HHHHHHCEEEEET------TTCCEEECCSCEE--SCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-H----HHHHhCCcEEeec------CCCcEEEeeeeeE--CCHHHcC
Confidence            4788899996  456677777899999999754 2    3334444322110      0111221100000  1111123


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..+|+||.+=.-+.   ...+++.+...++++..++...
T Consensus        70 ~~~DlVilavK~~~---~~~~l~~l~~~l~~~t~Iv~~~  105 (320)
T 3i83_A           70 TKPDCTLLCIKVVE---GADRVGLLRDAVAPDTGIVLIS  105 (320)
T ss_dssp             SCCSEEEECCCCCT---TCCHHHHHTTSCCTTCEEEEEC
T ss_pred             CCCCEEEEecCCCC---hHHHHHHHHhhcCCCCEEEEeC
Confidence            47999988755543   3357777888888887655443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=86.81  E-value=1.3  Score=34.27  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|++.|+   +...+++.|++|++++. +. .++.+.+.+...+              .++.+...|..+..
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   67 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG--------------SDAIAVRADVANAE   67 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------------CcEEEEEcCCCCHH
Confidence            357889988877654   23344556999999876 43 4444444343222              35677777777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-+..|++|.+--+
T Consensus        68 ~~~~~~~~~~~~~g~id~lv~nAg~   92 (246)
T 2uvd_A           68 DVTNMVKQTVDVFGQVDILVNNAGV   92 (246)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       11478999876443

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=86.77  E-value=3.5  Score=33.94  Aligned_cols=31  Identities=29%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEe
Q 027530           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITT   92 (222)
Q Consensus        62 ~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~   92 (222)
                      ..+|.+||=+|+ | .|+.++.+|+ .|++++++
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~  198 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINV  198 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEE
Confidence            457889999997 5 3888877775 58876554

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=86.75  E-value=2.2  Score=32.90  Aligned_cols=79  Identities=22%  Similarity=0.249  Sum_probs=46.6

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+..               ..++.+...|..+..
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~   67 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQHDSSDED   67 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEECCTTCHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---------------cCceEEEECCCCCHH
Confidence            35778999999876542   2334456999999997 4433333222210               135777887777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-+++|++|.+--+
T Consensus        68 ~~~~~~~~~~~~~~~id~li~~Ag~   92 (251)
T 1zk4_A           68 GWTKLFDATEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            3211       11368999876443

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=86.68  E-value=1.2  Score=35.61  Aligned_cols=80  Identities=20%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-------hHHHHHHHHHHhhccccccCCCCCCCCCceEEEE
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-------VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVE  130 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~  130 (222)
                      .++++++|=-|++.|+   ++..+++.|++|++++. .+       .++.+.+.+...+              .++.+..
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~   71 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--------------GQALPIV   71 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--------------SEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--------------CcEEEEE
Confidence            4678999999998775   33445566999999986 32       2444444444332              3677888


Q ss_pred             eecCCCccccc-------cCCCccEEEEeccc
Q 027530          131 LDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       131 ~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .|..+.+....       .-++.|++|.+--+
T Consensus        72 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           72 GDIRDGDAVAAAVAKTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            88776543211       12479999877544

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=86.64  E-value=2.9  Score=36.02  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC------CCCceEEEEeecCCC
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN------LLGSIQAVELDWGNE  136 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~------~~~~v~~~~~d~~~~  136 (222)
                      -++-=+|+|. |+ .+..+++.|.+|++.|. ++.++.+++.  .+...    .+....      ...++.+..    + 
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g--~~~~~----epgl~~~~~~~~~~g~l~~tt----d-   77 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQN--VMPIY----EPGLDALVASNVKAGRLSFTT----D-   77 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTT--CCSSC----CTTHHHHHHHHHHTTCEEEES----C-
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC--CCCcc----CCCHHHHHHhhcccCCEEEEC----C-
Confidence            3677788775 54 34556677999999998 5555554431  11000    000000      012333331    1 


Q ss_pred             ccccccCCCccEEEEe--ccc---cCc---cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          137 DHIKAVAPPFDYIIGT--DVV---YAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~--d~~---y~~---~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                        ....-...|+||.+  .+.   ...   ......++.+...++++..++... .-.+.+.+...+.+
T Consensus        78 --~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l  143 (446)
T 4a7p_A           78 --LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERII  143 (446)
T ss_dssp             --HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHH
T ss_pred             --HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHH
Confidence              11112457888776  222   111   136667778888888887665533 33333444444444

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=86.58  E-value=1  Score=34.97  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             CCCCeEEEeCCCccHHHH----HHHHhCCEEEEecch--hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGAGCGVAGF----GMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i----~la~~g~~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +++++||=.|++.|+ |.    .+++.|++|+++|..  +.++.+.+.+...+              .++.+...|..+.
T Consensus         5 l~~k~vlVTGasggi-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   69 (258)
T 3afn_B            5 LKGKRVLITGSSQGI-GLATARLFARAGAKVGLHGRKAPANIDETIASMRADG--------------GDAAFFAADLATS   69 (258)
T ss_dssp             GTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT--------------CEEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC--------------CceEEEECCCCCH
Confidence            467899988876554 43    344568999999863  34554444443222              3577788787765


Q ss_pred             cccccc-------CCCccEEEEeccc
Q 027530          137 DHIKAV-------APPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~~-------~~~fD~Ii~~d~~  155 (222)
                      ......       -+.+|+||.+--+
T Consensus        70 ~~~~~~~~~~~~~~g~id~vi~~Ag~   95 (258)
T 3afn_B           70 EACQQLVDEFVAKFGGIDVLINNAGG   95 (258)
T ss_dssp             HHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            432211       1379999876543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.53  E-value=1  Score=37.25  Aligned_cols=94  Identities=19%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC--
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN--  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~--  135 (222)
                      ..+|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+..               .+.  +...  
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~vi--~~~~~~  227 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---------------LVL--QISKES  227 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---------------EEE--ECSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---------------EEE--cCcccc
Confidence            45788999999986 777777775 588 8999997 445555542    2211               111  1110  


Q ss_pred             -Cc---cc-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          136 -ED---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       136 -~~---~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       .+   .. ......+|+|+-+--      ....+....++|+++|++++..
T Consensus       228 ~~~~~~~i~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          228 PQEIARKVEGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred             cchHHHHHHHHhCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEe
Confidence             00   00 011256999985421      2345677778899999987643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=86.31  E-value=4.3  Score=33.56  Aligned_cols=94  Identities=12%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-  135 (222)
                      ...+|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+..               .+  .+..+ 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~v--i~~~~~  246 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---------------EC--LNPKDY  246 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---------------EE--ECGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---------------EE--Eecccc
Confidence            345788999999885 777776665 588 7999997 556666543    2211               11  11111 


Q ss_pred             -Cc---cc-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEE
Q 027530          136 -ED---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       136 -~~---~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                       .+   .. ....+.+|+|+-+  .    -....+....++++++ |++++.
T Consensus       247 ~~~~~~~i~~~t~gg~Dvvid~--~----g~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          247 DKPIYEVICEKTNGGVDYAVEC--A----GRIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cchHHHHHHHHhCCCCCEEEEC--C----CCHHHHHHHHHHHhcCCCEEEEE
Confidence             00   00 1112379999843  2    1135677778889999 988764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=86.28  E-value=1.5  Score=34.98  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..+.++++|=-|++.|+   ++..+++.|++|+++|. . +.++.+.+.+....             ..++.+...|..+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d   87 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-------------SGTVLHHPADMTK   87 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-------------SSCEEEECCCTTC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-------------CCcEEEEeCCCCC
Confidence            34578899999988775   33455567999999996 3 34444444443211             2467788878776


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 027530          136 EDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .....       ..-++.|++|.+--+
T Consensus        88 ~~~v~~~~~~~~~~~g~iD~lv~nAg~  114 (281)
T 3v2h_A           88 PSEIADMMAMVADRFGGADILVNNAGV  114 (281)
T ss_dssp             HHHHHHHHHHHHHHTSSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence            54321       112478999876544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=86.23  E-value=0.75  Score=36.42  Aligned_cols=40  Identities=0%  Similarity=-0.066  Sum_probs=30.5

Q ss_pred             CCCccEEEEeccccCc-c-------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          143 APPFDYIIGTDVVYAE-H-------------LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~-~-------------~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +++||+|+..+++... .             ....++..+.++|+|+|.+++..
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4689999988776433 1             34567778889999999998875

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=86.21  E-value=1.8  Score=34.27  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=51.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. .+..+.+++ +...+              .++.+...|..+..
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~~--------------~~~~~~~~Dv~~~~   68 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQRQ--------------PRATYLPVELQDDA   68 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHHC--------------TTCEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhcC--------------CCEEEEEeecCCHH
Confidence            5689999999999986   44567778999999987 333333332 22222              35677787877654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        69 ~v~~~v~~~~~~~G~iDiLVNnAGi   93 (258)
T 4gkb_A           69 QCRDAVAQTIATFGRLDGLVNNAGV   93 (258)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            321       112579999877544

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=86.10  E-value=1.8  Score=33.32  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=48.0

Q ss_pred             CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+-   ...+++.|++|++++. ++.++.+.+.+....             ..++.+...|..+..
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   70 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-------------GVKAHGVEMNLLSEE   70 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-------------CCCEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-------------CCceEEEEccCCCHH
Confidence            35678899998865542   2234456899999997 444444444443211             135677777776654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-+.+|+||.+--+
T Consensus        71 ~~~~~~~~~~~~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           71 SINKAFEEIYNLVDGIDILVNNAGI   95 (248)
T ss_dssp             HHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            3211       12478999876443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=86.09  E-value=3.2  Score=34.96  Aligned_cols=41  Identities=27%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHH
Q 027530           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~  103 (222)
                      .++.+|+=+|+|. |......+ .+|++|++.|. ++.++.+++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4678999999985 65554433 46999999998 555555543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.08  E-value=2.2  Score=34.49  Aligned_cols=88  Identities=15%  Similarity=0.064  Sum_probs=52.2

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|.+||=+|+|. |+..+.+|+ .|++|+++|.++-++.+++    .+..               .+.  +  +...
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~----lGa~---------------~v~--~--d~~~  195 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAK----RGVR---------------HLY--R--EPSQ  195 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH----HTEE---------------EEE--S--SGGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHH----cCCC---------------EEE--c--CHHH
Confidence            455789999999975 777776665 5899999994335566543    2321               111  1  1111


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                         ....+|+|+-+  .-.     +......++++++|++++.
T Consensus       196 ---v~~g~Dvv~d~--~g~-----~~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          196 ---VTQKYFAIFDA--VNS-----QNAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ---CCSCEEEEECC--------------TTGGGEEEEEEEEEE
T ss_pred             ---hCCCccEEEEC--CCc-----hhHHHHHHHhcCCCEEEEE
Confidence               15679998832  211     1124456778899987765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=86.06  E-value=1.4  Score=35.27  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+....             ..++.+...|..+.
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-------------GNKVHAIQCDVRDP   88 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------SSCEEEEECCTTCH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-------------CCceEEEEeCCCCH
Confidence            45688999999987654   22344556999999997 444444444443221             13677888887765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ....       ...+++|+||.+--+
T Consensus        89 ~~~~~~~~~~~~~~g~id~li~~Ag~  114 (302)
T 1w6u_A           89 DMVQNTVSELIKVAGHPNIVINNAAG  114 (302)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4321       112478999876543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=85.91  E-value=4.8  Score=32.03  Aligned_cols=40  Identities=30%  Similarity=0.426  Sum_probs=28.6

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHH
Q 027530           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        66 ~~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~  105 (222)
                      ++|.=||+|. | .++..++..|.+|++.|. ++.++.+++.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i   47 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRF   47 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence            4677788886 3 345556677999999998 56777666554

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=85.89  E-value=0.9  Score=36.15  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=46.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+..               ..++.+...|..+.+.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---------------~~~~~~~~~Dv~d~~~   91 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA---------------YGDCQAIPADLSSEAG   91 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT---------------SSCEEECCCCTTSHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---------------cCceEEEEeeCCCHHH
Confidence            578899999987664   23345566999999997 4444433333221               1256666777765433


Q ss_pred             cc-------ccCCCccEEEEecc
Q 027530          139 IK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~  154 (222)
                      ..       ..-+..|++|.+--
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAg  114 (276)
T 2b4q_A           92 ARRLAQALGELSARLDILVNNAG  114 (276)
T ss_dssp             HHHHHHHHHHHCSCCSEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            21       11247899987644

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=85.89  E-value=1.7  Score=34.39  Aligned_cols=80  Identities=23%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-------hHHHHHHHHHHhhccccccCCCCCCCCCceEEEE
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-------VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVE  130 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~  130 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. .+       .++.+.+.+...+              .++.+..
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~   68 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--------------GQGLALK   68 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--------------SEEEEEE
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC--------------CeEEEEe
Confidence            4578999999998875   33455667999999986 22       1344444343322              4677888


Q ss_pred             eecCCCccccc-------cCCCccEEEEeccc
Q 027530          131 LDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       131 ~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .|..+......       .-++.|++|.+--+
T Consensus        69 ~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           69 CDIREEDQVRAAVAATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            88776543211       12479999877544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=85.77  E-value=1.5  Score=39.75  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=35.0

Q ss_pred             CCCccEEEEeccc--cCccC-HHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeEEEec
Q 027530          143 APPFDYIIGTDVV--YAEHL-LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  207 (222)
Q Consensus       143 ~~~fD~Ii~~d~~--y~~~~-~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v~~v~  207 (222)
                      ...+|.++.-..-  ++.++ -..++..+.++++||+.+.- + .-..    ...+.+ +.+|.+..++
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~-~~~~----~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST-F-TAAG----FVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE-S-CCCH----HHHHHHHHTTCEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe-c-cCcH----HHHHHHHhCCeEEEecc
Confidence            4689999873311  22222 25689999999999997542 2 1111    122222 5688887766

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=85.77  E-value=2  Score=35.16  Aligned_cols=62  Identities=16%  Similarity=0.056  Sum_probs=39.0

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|++.|+   ++..+++.|++|++++ . ++.++.+.+.+....             ..++.+...|..+..
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-------------PNSAITVQADLSNVA  110 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-------------TTCEEEEECCCSSSC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-------------CCeEEEEEeeCCCch
Confidence            567899999987765   2334556699999998 6 445554444443111             135777787877655

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=85.76  E-value=1.4  Score=35.17  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=51.1

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..+++++||=.|++.|+   ++..+++.|++|++++. .+.++.+.+.+......         ....++.+...|..+
T Consensus        13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~D~~~   83 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---------TKQARVIPIQCNIRN   83 (303)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT---------TCCCCEEEEECCTTC
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc---------cCCccEEEEecCCCC
Confidence            345678999999976554   22334456899999997 44555444444431100         012467888888776


Q ss_pred             Cccccc-------cCCCccEEEEecc
Q 027530          136 EDHIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       136 ~~~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ......       .-+++|+||.+--
T Consensus        84 ~~~v~~~~~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           84 EEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            543221       1136899987644

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=85.75  E-value=1.3  Score=34.53  Aligned_cols=77  Identities=22%  Similarity=0.274  Sum_probs=49.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +              .++.+...|..+..
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~D~~~~~   68 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---G--------------DAALAVAADISKEA   68 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--------------TTEEEEECCTTSHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C--------------CceEEEEecCCCHH
Confidence            4578999999998775   33455567999999997 44444333322   1              35677887777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        69 ~~~~~~~~~~~~~g~id~li~~Ag~   93 (261)
T 3n74_A           69 DVDAAVEAALSKFGKVDILVNNAGI   93 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCcc
Confidence            3211       12478999877443

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=85.68  E-value=1.7  Score=33.52  Aligned_cols=78  Identities=17%  Similarity=0.253  Sum_probs=46.1

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEe-cc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++ +. ++.++.+.+.+...+              .++.+...|..+..
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~   68 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAG--------------INVVVAKGDVKNPE   68 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTT--------------CCEEEEESCTTSHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcC--------------CcEEEEECCCCCHH
Confidence            367889989877554   223344569999988 44 334444444443322              35777887877654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-+..|++|.+--
T Consensus        69 ~~~~~~~~~~~~~~~~d~vi~~Ag   92 (247)
T 2hq1_A           69 DVENMVKTAMDAFGRIDILVNNAG   92 (247)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC-
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            3211       1137899987643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=85.62  E-value=2.4  Score=33.46  Aligned_cols=80  Identities=28%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--------------hhhHHHHHHHHHHhhccccccCCCCCCCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSGNLLG  124 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (222)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|.              .+.++.+.+.+...              ..
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~   73 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--------------NR   73 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--------------TC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--------------CC
Confidence            5678999999998775   33455667999999875              12333333333322              24


Q ss_pred             ceEEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          125 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       125 ~v~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ++.+...|..+......       .-++.|++|.+--+
T Consensus        74 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            67788888776543221       12479999877544

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=85.52  E-value=3.3  Score=34.36  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-  135 (222)
                      ...+|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+..               .+  ++..+ 
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~v--i~~~~~  250 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---------------DC--LNPREL  250 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---------------EE--ECGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---------------EE--Eccccc
Confidence            345788999999875 777776665 488 7999997 555665542    2211               11  11111 


Q ss_pred             -Cc---cc-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEE
Q 027530          136 -ED---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       136 -~~---~~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                       .+   .. ....+.+|+|+-+  .    -....+....++++++ |++++.
T Consensus       251 ~~~~~~~v~~~~~~g~Dvvid~--~----G~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          251 DKPVQDVITELTAGGVDYSLDC--A----GTAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SSCHHHHHHHHHTSCBSEEEES--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cchHHHHHHHHhCCCccEEEEC--C----CCHHHHHHHHHHhhcCCCEEEEE
Confidence             00   00 0112379999843  2    1135677788889999 988754

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=85.42  E-value=1.2  Score=36.34  Aligned_cols=81  Identities=19%  Similarity=0.236  Sum_probs=50.4

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-----------hhHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------EVLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-----------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..           +.++.+.+.+...+              .++
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~   88 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--------------GEA   88 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--------------CEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC--------------CcE
Confidence            34678999999988765   334455679999999853           34444444444332              356


Q ss_pred             EEEEeecCCCccccc-------cCCCccEEEEeccc
Q 027530          127 QAVELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .+...|..+......       .-++.|++|.+--+
T Consensus        89 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A           89 VADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             EEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            777777766543211       12478999876544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=85.25  E-value=1.7  Score=33.67  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=48.5

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++++|=-|++.|+   ++..+++.|++|+.+|. + +..+.+.+.+...+              .++.+...|..+...
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~~~   68 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG--------------VDSFAIQANVADADE   68 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------SCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHHH
Confidence            46788888887765   33345567999988875 3 44555544444332              366778877776543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       .-++.|++|.+--+
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg~   92 (246)
T 3osu_A           69 VKAMIKEVVSQFGSLDVLVNNAGI   92 (246)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       12478999877544

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=85.14  E-value=1.7  Score=35.93  Aligned_cols=81  Identities=20%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhh-------HHHHHHHHHHhhccccccCCCCCCCCCceEEE
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV-------LPLLKRNVEWNTSRISQMNPGSGNLLGSIQAV  129 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~-------l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~  129 (222)
                      ..++|+++|=.|++.|+   ++..+++.|++|++++. .+-       +..+.+.+...+              .++.+.
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--------------~~~~~~  106 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--------------GKALPC  106 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT--------------CEEEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC--------------CeEEEE
Confidence            45789999999998775   33455567999999886 321       344444444322              367778


Q ss_pred             EeecCCCccccc-------cCCCccEEEEeccc
Q 027530          130 ELDWGNEDHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       130 ~~d~~~~~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ..|..+......       .-+..|++|.+--+
T Consensus       107 ~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          107 IVDVRDEQQISAAVEKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            878776543221       12479999877544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=85.12  E-value=3.6  Score=34.11  Aligned_cols=94  Identities=13%  Similarity=0.102  Sum_probs=56.9

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||-+|+|. |+..+.+|+ +|+ +|+++|. ++-++.+++    .+..               .+  ++..+.
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------------~v--i~~~~~  247 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---------------DF--VNPNDH  247 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---------------EE--ECGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---------------eE--Eecccc
Confidence            345788999999875 777776665 588 7999997 556666542    2211               11  121110


Q ss_pred             -cc----c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEE
Q 027530          137 -DH----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       137 -~~----~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                       ..    . ....+.+|+|+-+--      ....+....++++++ |++++.
T Consensus       248 ~~~~~~~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          248 SEPISQVLSKMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SSCHHHHHHHHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             chhHHHHHHHHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEE
Confidence             00    0 011237999984421      135677888899999 988764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=85.11  E-value=1.3  Score=34.90  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=48.3

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++|. ++..+.+.+.+...+              .++.+...|..+...
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~   97 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG--------------VHSKAYKCNISDPKS   97 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHC--------------SCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--------------CcceEEEeecCCHHH
Confidence            578899999987664   23345567999999987 444444433333222              356777878776543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       .-+++|++|.+--+
T Consensus        98 ~~~~~~~~~~~~g~id~li~~Ag~  121 (279)
T 3ctm_A           98 VEETISQQEKDFGTIDVFVANAGV  121 (279)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECGGG
T ss_pred             HHHHHHHHHHHhCCCCEEEECCcc
Confidence            211       11468999876443

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=85.09  E-value=3.6  Score=34.05  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=56.9

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+..               .+  .+..+.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---------------~v--i~~~~~  245 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---------------EC--INPQDF  245 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---------------EE--ECGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---------------eE--eccccc
Confidence            345788999999875 777766665 588 7999997 556666643    2211               11  111110


Q ss_pred             -cc----c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEE
Q 027530          137 -DH----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       137 -~~----~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                       ..    . ....+.+|+|+-+--      ....+....++++++ |++++.
T Consensus       246 ~~~~~~~v~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          246 SKPIQEVLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cccHHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEE
Confidence             00    0 111237999984421      135677788889999 988764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=85.04  E-value=2.8  Score=32.44  Aligned_cols=80  Identities=23%  Similarity=0.212  Sum_probs=47.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .++++++|=.|++.|+   ++..+++.|++|+.++ . .+..+.+.+.+...+              .++.+...|..+.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   69 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--------------GSAFSIGANLESL   69 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT--------------CEEEEEECCTTSH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC--------------CceEEEecCcCCH
Confidence            4578999999998775   3344556799988764 3 334444444444332              3566777676654


Q ss_pred             ccccc-------------cCCCccEEEEeccc
Q 027530          137 DHIKA-------------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------------~~~~fD~Ii~~d~~  155 (222)
                      .....             ...+.|++|.+--+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~  101 (255)
T 3icc_A           70 HGVEALYSSLDNELQNRTGSTKFDILINNAGI  101 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhcccccCCcccEEEECCCC
Confidence            32210             01358999877544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=85.01  E-value=2.3  Score=35.37  Aligned_cols=94  Identities=17%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-  135 (222)
                      ...+|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+..               .+.  +..+ 
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---------------~vi--~~~~~  248 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---------------EFV--NPKDH  248 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---------------EEE--CGGGC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---------------EEE--ccccC
Confidence            445788999999985 777776665 488 7999997 555565542    2211               111  1111 


Q ss_pred             Ccc----c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEE
Q 027530          136 EDH----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  181 (222)
Q Consensus       136 ~~~----~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~  181 (222)
                      ...    . ....+.+|+|+-+  .    -....+....++++++ |++++.
T Consensus       249 ~~~~~~~i~~~~~gg~D~vid~--~----g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          249 DKPIQEVIVDLTDGGVDYSFEC--I----GNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             chhHHHHHHHhcCCCCCEEEEC--C----CCHHHHHHHHHHhhccCCEEEEE
Confidence            000    0 1123479999843  2    1245677788889996 887764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=84.99  E-value=1.4  Score=34.32  Aligned_cols=76  Identities=14%  Similarity=0.136  Sum_probs=45.8

Q ss_pred             CCCeEEEeCCCccHHHH----HHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           64 KGKRVIELGAGCGVAGF----GMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i----~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++||=.|+..| +|.    .+++ .|++|++++. .+.++.+.+.+...+              .++.+...|..+..
T Consensus         3 ~~k~vlITGasgg-IG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dl~~~~   67 (276)
T 1wma_A            3 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------LSPRFHQLDIDDLQ   67 (276)
T ss_dssp             CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------CCCEEEECCTTCHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--------------CeeEEEECCCCCHH
Confidence            5678998886654 443    3445 6889999987 444444444444322              35677887877654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       ..+++|+||.+--
T Consensus        68 ~~~~~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           68 SIRALRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCc
Confidence            3211       1137899987643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=84.92  E-value=1.4  Score=34.61  Aligned_cols=77  Identities=19%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+.                 ..+.+...|..+..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~~D~~~~~   66 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DAARYVHLDVTQPA   66 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GGEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cCceEEEecCCCHH
Confidence            3577899999987764   23345566999999987 443333222211                 13566777776654


Q ss_pred             ccccc-------CCCccEEEEeccc
Q 027530          138 HIKAV-------APPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~~-------~~~fD~Ii~~d~~  155 (222)
                      .....       -+..|++|.+--+
T Consensus        67 ~v~~~~~~~~~~~g~iD~lv~~Ag~   91 (260)
T 1nff_A           67 QWKAAVDTAVTAFGGLHVLVNNAGI   91 (260)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            32211       1378999876443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=84.91  E-value=0.54  Score=39.36  Aligned_cols=40  Identities=25%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             CCCCCeEEEeCCCc-cHHHH-HHHHhCCEEEEecc-hhhHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGF-GMALLGCNVITTDQ-IEVLPLL  101 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i-~la~~g~~v~~~D~-~~~l~~~  101 (222)
                      .+++++|+=+|+|. |.... .+...|++|+++|. ++.++.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            36778999999963 44333 23346899999997 4444444

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.89  E-value=1.2  Score=35.19  Aligned_cols=78  Identities=22%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +              ..+.+...|..+..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~Dv~~~~   70 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---G--------------RGAVHHVVDLTNEV   70 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---C--------------TTCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C--------------CCeEEEECCCCCHH
Confidence            5678999999988765   33455667999999997 44444443322   1              24566777776654


Q ss_pred             cccc-------cCCCccEEEEecccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~y  156 (222)
                      ....       .-++.|++|.+--+.
T Consensus        71 ~v~~~~~~~~~~~g~id~lv~nAg~~   96 (271)
T 3tzq_B           71 SVRALIDFTIDTFGRLDIVDNNAAHS   96 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            3211       124789998775443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=84.82  E-value=1.5  Score=34.10  Aligned_cols=78  Identities=21%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++++||=.|+..|+   +...+++.|++|++++. .. .++.+.+.+...+              .++.+...|..+..
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~   70 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--------------GEAIAVKGDVTVES   70 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CEEEEEECCTTSHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--------------CceEEEECCCCCHH
Confidence            467899989877654   22334456899999886 43 3444444443221              35677777777654


Q ss_pred             cccc-------cCCCccEEEEecc
Q 027530          138 HIKA-------VAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~  154 (222)
                      ....       .-+.+|++|.+--
T Consensus        71 ~~~~~~~~~~~~~g~id~li~~Ag   94 (261)
T 1gee_A           71 DVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1137899987643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=84.78  E-value=1.2  Score=35.44  Aligned_cols=77  Identities=22%  Similarity=0.259  Sum_probs=46.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .+.++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+.+.+.                 .++.+...|..+..
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~~Dv~d~~   87 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DDALCVPTDVTDPD   87 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SCCEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CCeEEEEecCCCHH
Confidence            4567889999987765   33445567999999997 444443333221                 25677787777654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 027530          138 HIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ....       .-++.|++|.+--+
T Consensus        88 ~v~~~~~~~~~~~g~iD~lVnnAg~  112 (272)
T 4dyv_A           88 SVRALFTATVEKFGRVDVLFNNAGT  112 (272)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3221       12479999876443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=84.78  E-value=1.5  Score=34.25  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+   +              .++.+...|..+.+.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~D~~~~~~   65 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--------------DAARYQHLDVTIEED   65 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--------------GGEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--------------CceeEEEecCCCHHH
Confidence            467899999987664   33345567999999997 43333222211   1              256777777766543


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 027530          139 IKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       139 ~~~-------~~~~fD~Ii~~d~~  155 (222)
                      ...       .-++.|++|.+--+
T Consensus        66 ~~~~~~~~~~~~g~iD~lv~nAg~   89 (254)
T 1hdc_A           66 WQRVVAYAREEFGSVDGLVNNAGI   89 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       11378999876443

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=84.69  E-value=1.3  Score=34.57  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ++++++|=.|++.|+   +...+++.|++|+++|.... +...+.+...              ..++.+...|..+....
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~--------------~~~~~~~~~D~~~~~~v   66 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARH--------------GVKAVHHPADLSDVAQI   66 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTT--------------SCCEEEECCCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhc--------------CCceEEEeCCCCCHHHH
Confidence            367889999987654   22344556999999987322 2222323211              13567777777665432


Q ss_pred             ccc-------CCCccEEEEecc
Q 027530          140 KAV-------APPFDYIIGTDV  154 (222)
Q Consensus       140 ~~~-------~~~fD~Ii~~d~  154 (222)
                      ...       -+..|++|.+--
T Consensus        67 ~~~~~~~~~~~g~id~lv~~Ag   88 (255)
T 2q2v_A           67 EALFALAEREFGGVDILVNNAG   88 (255)
T ss_dssp             HHHHHHHHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            211       137899987643

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=84.60  E-value=1.5  Score=34.39  Aligned_cols=79  Identities=18%  Similarity=0.224  Sum_probs=46.4

Q ss_pred             CCCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~---~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+++++||=.|++.|+-   ...+++.|++|+++|. ++..+.+.+.+.               ...++.+...|..+.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~D~~~~   76 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---------------SPDVISFVHCDVTKD   76 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------------CTTTEEEEECCTTCH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC---------------CCCceEEEECCCCCH
Confidence            346788999999876542   2334456999999987 333332222221               012577888787765


Q ss_pred             cccccc-------CCCccEEEEecc
Q 027530          137 DHIKAV-------APPFDYIIGTDV  154 (222)
Q Consensus       137 ~~~~~~-------~~~fD~Ii~~d~  154 (222)
                      ......       -+..|++|.+--
T Consensus        77 ~~~~~~~~~~~~~~~~id~li~~Ag  101 (278)
T 2bgk_A           77 EDVRNLVDTTIAKHGKLDIMFGNVG  101 (278)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            432211       137899986643

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=84.59  E-value=1.5  Score=34.25  Aligned_cols=76  Identities=12%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++++++|=.|++.|+   +...+++.|++|+++|. ++.++.+.+.+   +              .++.+...|..+..
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--------------~~~~~~~~D~~~~~   71 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL---G--------------NNCVFAPADVTSEK   71 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH---C--------------TTEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh---C--------------CceEEEEcCCCCHH
Confidence            4578899999987654   22334456899999997 44443333222   1              25677787777654


Q ss_pred             ccccc-------CCCccEEEEecc
Q 027530          138 HIKAV-------APPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~~~-------~~~fD~Ii~~d~  154 (222)
                      .....       -++.|++|.+--
T Consensus        72 ~v~~~~~~~~~~~g~id~li~~Ag   95 (265)
T 2o23_A           72 DVQTALALAKGKFGRVDVAVNCAG   95 (265)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCc
Confidence            32211       137999987643

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=84.40  E-value=1.5  Score=34.72  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++|+++|=-|++.|+   ++..+++.|++|+.+|. .+.++.+.+.   .+              .++.+...|..+.
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~--------------~~~~~~~~Dv~d~   85 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD---LG--------------KDVFVFSANLSDR   85 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HC--------------SSEEEEECCTTSH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--------------CceEEEEeecCCH
Confidence            34678999999988765   33345567999999987 4443333221   11              3577788777765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      .....       .-++.|++|.+--+
T Consensus        86 ~~v~~~~~~~~~~~g~iD~lvnnAg~  111 (266)
T 3grp_A           86 KSIKQLAEVAEREMEGIDILVNNAGI  111 (266)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            43211       12478999876544

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=84.39  E-value=3.9  Score=31.93  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=43.5

Q ss_pred             CCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG--~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++++++|=.|++  .|+   ++..+++.|++|+++|.....+...+.+....              ....+...|..+.+
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~--------------~~~~~~~~D~~~~~   72 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL--------------GSDIVLQCDVAEDA   72 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT--------------TCCCEEECCTTCHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc--------------CCcEEEEccCCCHH
Confidence            567899999986  443   23344556999999987332211222222111              12355666766554


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        73 ~v~~~~~~~~~~~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           73 SIDTMFAELGKVWPKFDGFVHSIGF   97 (265)
T ss_dssp             HHHHHHHHHHTTCSSEEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            321       112478999877544

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=84.38  E-value=2.2  Score=33.83  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+++++||=.|++.|+ |..    +++.|++|++++. ++.++.+.+.+...              ..++.+...|..+.
T Consensus        41 ~l~~k~vlITGasggI-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~Dl~d~  105 (285)
T 2c07_A           41 CGENKVALVTGAGRGI-GREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF--------------GYESSGYAGDVSKK  105 (285)
T ss_dssp             CCSSCEEEEESTTSHH-HHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--------------TCCEEEEECCTTCH
T ss_pred             cCCCCEEEEECCCcHH-HHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--------------CCceeEEECCCCCH
Confidence            4567899999987654 433    3345889998885 44444444434322              23577778777765


Q ss_pred             ccccc-------cCCCccEEEEeccc
Q 027530          137 DHIKA-------VAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~~~-------~~~~fD~Ii~~d~~  155 (222)
                      +....       .-+..|+||.+--+
T Consensus       106 ~~v~~~~~~~~~~~~~id~li~~Ag~  131 (285)
T 2c07_A          106 EEISEVINKILTEHKNVDILVNNAGI  131 (285)
T ss_dssp             HHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            43221       12478999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.85
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.85
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.76
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.7
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.69
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.69
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.69
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.67
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.65
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.64
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.64
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.64
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.62
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.62
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.62
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.61
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.6
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.6
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.59
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.59
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.57
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.55
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.54
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.52
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.52
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.52
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.51
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.51
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.5
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.49
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.49
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.48
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.48
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.46
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.45
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.44
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.44
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.44
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.44
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.43
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.43
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.41
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.4
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.4
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.39
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.33
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.3
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.28
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.27
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.21
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.17
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.03
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.99
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.93
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.88
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.87
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.86
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.81
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.65
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.64
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.62
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.59
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.58
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.49
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.45
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.42
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.39
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.36
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.28
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.21
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.21
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.13
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.12
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.07
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.07
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.04
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.93
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.9
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.85
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.73
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.59
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.5
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.44
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.97
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.76
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.71
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.56
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.44
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.43
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.4
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.37
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.35
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.04
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.95
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.86
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.84
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.72
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.46
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.23
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.21
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.02
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.01
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	94.92
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.77
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.73
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.61
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.57
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.42
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.39
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.37
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.33
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.3
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.29
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.18
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.16
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.13
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.11
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.96
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.96
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.91
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.91
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.82
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.78
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.73
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.63
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.46
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.44
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.41
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.37
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.36
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.34
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.23
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.2
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.09
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.05
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.99
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.75
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.7
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.36
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.2
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.04
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.94
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.88
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.7
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.26
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.15
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.71
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.64
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.38
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.28
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.36
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.34
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.26
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.07
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.89
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.89
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.65
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	88.52
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	88.41
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.32
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	88.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	86.82
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.65
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.64
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	85.39
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	84.61
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.81
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	82.66
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	82.39
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.76
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.26
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	80.87
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.29

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=8.1e-21  Score=146.58  Aligned_cols=146  Identities=20%  Similarity=0.244  Sum_probs=116.7

Q ss_pred             eEEEeEcCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEe
Q 027530           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT   92 (222)
Q Consensus        13 ~~~~~~~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~   92 (222)
                      .++..+.|+.+.+.+.++.+..+ .++.++.+|++.+.           ..++++|||+|||+|..++.+++.+.+|+++
T Consensus        13 ~~~~~~~g~~~~~~t~~gvF~~~-~~d~~t~lLi~~l~-----------~~~~~~VLDiGcG~G~~~~~la~~~~~v~~i   80 (194)
T d1dusa_          13 IVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVV-----------VDKDDDILDLGCGYGVIGIALADEVKSTTMA   80 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCC-----------CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred             EEEEEECCeeEEEEcCCCccCCC-CcCHHHHHHHHhCC-----------cCCCCeEEEEeecCChhHHHHHhhcccccee
Confidence            47777899999999888765444 34566777777653           3467899999999999999999999999999


Q ss_pred             cc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-HHHHHHHHHH
Q 027530           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-LEPLLQTIFA  170 (222)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-~~~ll~~~~~  170 (222)
                      |+ +.+++.+++|++.|++.           ..++++...|+.+.    ..+++||+|++++++|.... ...+++.+.+
T Consensus        81 D~s~~~i~~a~~n~~~~~l~-----------~~~i~~~~~d~~~~----~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~  145 (194)
T d1dusa_          81 DINRRAIKLAKENIKLNNLD-----------NYDIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKE  145 (194)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT-----------TSCEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHH
T ss_pred             eeccccchhHHHHHHHhCCc-----------cceEEEEEcchhhh----hccCCceEEEEcccEEecchhhhhHHHHHHH
Confidence            99 56999999999998854           34678887666432    23678999999999877544 5779999999


Q ss_pred             hcCCCeEEEEEEEEc
Q 027530          171 LSGPKTTILLGYEIR  185 (222)
Q Consensus       171 ~l~~~g~~~l~~~~r  185 (222)
                      +|+|||.+++.....
T Consensus       146 ~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         146 LLKDNGEIWVVIQTK  160 (194)
T ss_dssp             HEEEEEEEEEEEEST
T ss_pred             hcCcCcEEEEEEeCc
Confidence            999999998876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=5.5e-21  Score=153.17  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=115.0

Q ss_pred             eEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHH
Q 027530           21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLP   99 (222)
Q Consensus        21 ~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~   99 (222)
                      .++.|..+| +..+|+-.++++.++.+++...         ..+|++|||+|||+|.+++.++++|++|+++|+ ++|++
T Consensus        87 ~~~~i~i~p-g~aFGTG~H~TT~l~l~~l~~~---------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~  156 (254)
T d2nxca1          87 AEIPLVIEP-GMAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLP  156 (254)
T ss_dssp             SSEEEECCC-C-----CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             cceEEEEcc-ccccCccccchhhHHHHHHHhh---------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHH
Confidence            457777788 5556666679999999999865         457899999999999999999999999999999 66999


Q ss_pred             HHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          100 LLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .+++|++.|++              ++++...++.+    ....++||+|+++-.   .+.+..+++.+.++|||||+++
T Consensus       157 ~A~~na~~n~~--------------~~~~~~~d~~~----~~~~~~fD~V~ani~---~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         157 QAEANAKRNGV--------------RPRFLEGSLEA----ALPFGPFDLLVANLY---AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             HHHHHHHHTTC--------------CCEEEESCHHH----HGGGCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHcCC--------------ceeEEeccccc----cccccccchhhhccc---cccHHHHHHHHHHhcCCCcEEE
Confidence            99999999985              34566644332    123578999998733   3456788999999999999999


Q ss_pred             EEEEEcChhHHHHHHHHH-hcCCeEEEe
Q 027530          180 LGYEIRSTSVHEQMLQMW-KSNFNVKLV  206 (222)
Q Consensus       180 l~~~~r~~~~~~~f~~~~-~~~~~v~~v  206 (222)
                      ++......  ...+.+.+ +.+|.+...
T Consensus       216 lSgil~~~--~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         216 LTGILKDR--APLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             EEEEEGGG--HHHHHHHHHHTTCEEEEE
T ss_pred             EEecchhh--HHHHHHHHHHCCCEEEEE
Confidence            98765543  24555555 457876443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=2.8e-19  Score=141.41  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=94.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...+|.+|||||||+|..+..+++.+++|+++|+ ++|++.|++++..++.             .++.+.+.|..   ..
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-------------~~~~~~~~d~~---~~   76 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-------------ENVRFQQGTAE---SL   76 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-------------CSEEEEECBTT---BC
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-------------ccccccccccc---cc
Confidence            4568899999999999999999999999999999 5699999999988874             46888886654   34


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +..+++||+|+++.++++..+...+++.+.++|+|||+++++...+
T Consensus        77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            4567899999999999998899999999999999999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=6.2e-19  Score=138.67  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=94.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||||||+|..+..+++.|++|+++|+ +++++.|++++..++.             .++++...++.+   .
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-------------~~i~~~~~d~~~---l   75 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-------------QQVEYVQGDAEQ---M   75 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEECCC-C---C
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-------------cccccccccccc---c
Confidence            3456789999999999999999999999999999 5699999999988763             478899877654   3


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +..+++||+|++..++++..+...+++.+.++|+|||++++.....
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            4457899999999999999999999999999999999999876543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.77  E-value=5.9e-18  Score=137.38  Aligned_cols=110  Identities=13%  Similarity=0.075  Sum_probs=94.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...++.+|||||||+|..+..+++. |++|+++|+ +.+++.++++....++.            .++++...|+.+   
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~------------~~v~~~~~d~~~---  128 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA------------DNITVKYGSFLE---  128 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT------------TTEEEEECCTTS---
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc------------cccccccccccc---
Confidence            4557899999999999999999875 889999999 56999999999887753            589999977654   


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      ++..+++||+|++..++++.++...+++.+.++|+|||++++.....
T Consensus       129 l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         129 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            34457899999999999999999999999999999999999887543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.1e-18  Score=136.25  Aligned_cols=123  Identities=15%  Similarity=0.046  Sum_probs=102.4

Q ss_pred             cchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccC
Q 027530           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (222)
Q Consensus        39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (222)
                      +|.+.-..+.|...       ....+|++|||||||+|..+..+++. |++|+++|. +.+++.++++++.+++.     
T Consensus        15 ~p~~~~~~~~l~~~-------~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-----   82 (245)
T d1nkva_          15 NPFTEEKYATLGRV-------LRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-----   82 (245)
T ss_dssp             SSCCHHHHHHHHHH-------TCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-----
T ss_pred             CCCCHHHHHHHHHH-------cCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-----
Confidence            45555666666655       35667899999999999999988875 789999999 56999999999988753     


Q ss_pred             CCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          117 PGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       117 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                             +++++...|+.+.    ..+++||+|++..++++..+...+++.+.++|||||++++..+.
T Consensus        83 -------~~v~~~~~d~~~~----~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          83 -------ERVHFIHNDAAGY----VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             -------TTEEEEESCCTTC----CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             -------ccchhhhhHHhhc----cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence                   5799999777653    23678999999999999999999999999999999999998753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=1e-17  Score=130.73  Aligned_cols=104  Identities=16%  Similarity=0.255  Sum_probs=85.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..++.+++.|++|+|+|+ ++|++.+++++...+              ..+.....|..   .++..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--------------~~~~~~~~d~~---~l~~~   99 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--------------SNVEFIVGDAR---KLSFE   99 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCCEEEECCTT---SCCSC
T ss_pred             CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--------------ccccccccccc---ccccc
Confidence            5579999999999999999999999999999 569999998887654              24556664443   34455


Q ss_pred             CCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|++..++++.+  ....+++.+.++|+|||++++....
T Consensus       100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            78999999999998854  5677999999999999999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=5.7e-17  Score=123.83  Aligned_cols=106  Identities=17%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+|.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.+++.            .++++.+.|.   .+..
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~------------~~v~~~~gda---~~~~   95 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG------------DNVTLMEGDA---PEAL   95 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC------------TTEEEEESCH---HHHH
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCC------------cceEEEECch---hhcc
Confidence            458899999999999999999999889999999 67999999999999853            5888888554   3333


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      .....||.|++....   .....+++.+.++|+|+|++++.....
T Consensus        96 ~~~~~~D~v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             TTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             cccCCcCEEEEeCcc---ccchHHHHHHHHHhCcCCEEEEEeecc
Confidence            345789999988764   346789999999999999988766443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=2.1e-17  Score=130.62  Aligned_cols=99  Identities=18%  Similarity=0.236  Sum_probs=80.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+.+|||+|||+|..+..+++.|++|+|+|. ++|++.|+++...                   .+...   +...++..
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-------------------~~~~~---~~~~l~~~   99 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-------------------NVVEA---KAEDLPFP   99 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-------------------CEEEC---CTTSCCSC
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc-------------------ccccc---cccccccc
Confidence            5679999999999999999999999999999 5699998875321                   12333   33444556


Q ss_pred             CCCccEEEEe-ccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGT-DVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~-d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      +++||+|++. +++++..+...+++.+.++|+|||.+++..+.
T Consensus       100 ~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             cccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            7899999985 68888888999999999999999999988764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.69  E-value=2.8e-17  Score=129.10  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=85.2

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+++++|||||||+|..+..+++.|.+|+++|. +++++.++++..                 .++.+...++.+.   .
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----------------~~~~~~~~~~~~~---~   77 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----------------DGITYIHSRFEDA---Q   77 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----------------SCEEEEESCGGGC---C
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----------------ccccccccccccc---c
Confidence            457889999999999999999999999999999 569999886532                 2567777555432   2


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHH-HhcCCCeEEEEEEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEI  184 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~l~~~~  184 (222)
                       .+++||+|++.++++|.++...+++.+. ++|+|||.+++..+.
T Consensus        78 -~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          78 -LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             -CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             -cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence             3578999999999999999999999987 789999999998764

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=9.7e-17  Score=127.44  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||||||+|..++.++++|++|+|+|. ++|++.|++++..++              .++++.+.|+.+.   +
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~--------------~~i~~~~~d~~~l---~  101 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--------------LKIEFLQGDVLEI---A  101 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCCEEEESCGGGC---C
T ss_pred             CCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc--------------ccchheehhhhhc---c
Confidence            335679999999999999999999999999999 569999999988765              2678888666543   2


Q ss_pred             ccCCCccEEEEe-ccccCc--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 AVAPPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 ~~~~~fD~Ii~~-d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      . +++||+|++. .++++.  +....+++.+.++|+|||++++...
T Consensus       102 ~-~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         102 F-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             C-CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            2 4689999986 455543  3456799999999999999988643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.69  E-value=1.4e-16  Score=122.64  Aligned_cols=104  Identities=19%  Similarity=0.230  Sum_probs=85.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      .++.+|||||||+|..++.+++.|.+|+++|+ +++++.+++++...++             .++.+...|..+..    
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-------------~~~~~~~~d~~~~~----   91 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-------------DNLQTDLVDLNTLT----   91 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------TTEEEEECCTTTCC----
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-------------cchhhhheeccccc----
Confidence            34569999999999999999999999999999 5599999999887664             36777775554332    


Q ss_pred             cCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+++||+|++..++++.  .....+++.+.++|+|+|.+++...
T Consensus        92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          92 FDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            35789999999999875  3466899999999999999988654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.1e-16  Score=122.75  Aligned_cols=131  Identities=13%  Similarity=0.025  Sum_probs=97.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ....+.+|||||||+|..+..++.. +.+|+++|+ ++|++.|++++..++.             .++++.+.|..+   
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-------------~~~~f~~~d~~~---  120 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-------------RVRNYFCCGLQD---  120 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-------------GEEEEEECCGGG---
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-------------cccccccccccc---
Confidence            3446679999999999999887655 457999999 6699999999877653             367888866543   


Q ss_pred             ccccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHh-cCCeE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SNFNV  203 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~-~~~~v  203 (222)
                      ....+++||+|++..++++...  ...+++.++++|+|+|.+++.......            .....+.+.++ .+|++
T Consensus       121 ~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i  200 (222)
T d2ex4a1         121 FTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL  200 (222)
T ss_dssp             CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred             cccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence            3445789999999999988654  457999999999999999987654321            12456666664 58877


Q ss_pred             EEec
Q 027530          204 KLVP  207 (222)
Q Consensus       204 ~~v~  207 (222)
                      ....
T Consensus       201 i~~~  204 (222)
T d2ex4a1         201 LAEE  204 (222)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.8e-16  Score=124.66  Aligned_cols=134  Identities=16%  Similarity=0.251  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (222)
                      +..|.++.....        ...+.+|||||||+|.+++.++...  ++|+++|+ +++++.|++|++.+++        
T Consensus        94 TE~lv~~~l~~~--------~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~--------  157 (274)
T d2b3ta1          94 TECLVEQALARL--------PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI--------  157 (274)
T ss_dssp             HHHHHHHHHHHS--------CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--------
T ss_pred             hhhhhhhHhhhh--------cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc--------
Confidence            567777766552        2345789999999999999998764  48999999 5699999999999884        


Q ss_pred             CCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-------------------------CHHHHHHHHHHhcC
Q 027530          119 SGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSG  173 (222)
Q Consensus       119 ~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-------------------------~~~~ll~~~~~~l~  173 (222)
                           .++.+.+.||.+..    .+.+||+|++|+++...+                         .+..++....++|+
T Consensus       158 -----~~v~~~~~d~~~~~----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~  228 (274)
T d2b3ta1         158 -----KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV  228 (274)
T ss_dssp             -----CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred             -----ccceeeeccccccc----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence                 36899998876432    256899999999975422                         14557788888899


Q ss_pred             CCeEEEEEEEEcChhHHHHHHHHHhcCCe
Q 027530          174 PKTTILLGYEIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       174 ~~g~~~l~~~~r~~~~~~~f~~~~~~~~~  202 (222)
                      |+|.+++...........++++  +.+|.
T Consensus       229 ~~G~l~lEig~~q~~~v~~~l~--~~gf~  255 (274)
T d2b3ta1         229 SGGFLLLEHGWQQGEAVRQAFI--LAGYH  255 (274)
T ss_dssp             EEEEEEEECCSSCHHHHHHHHH--HTTCT
T ss_pred             CCCEEEEEECchHHHHHHHHHH--HCCCC
Confidence            9999998765444433333333  34563

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=2.7e-16  Score=124.84  Aligned_cols=103  Identities=15%  Similarity=0.070  Sum_probs=82.5

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++++|||+|||+|..++.++++|.+|+|+|. ++|++.|++++..++              .++++.+.|+.+..   
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~--------------~~v~~~~~d~~~~~---   97 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--------------LKPRLACQDISNLN---   97 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--------------CCCEEECCCGGGCC---
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC--------------ccceeeccchhhhc---
Confidence            345689999999999999999999999999999 569999999887665              36788886665432   


Q ss_pred             ccCCCccEEEEe-ccccCc---cCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          141 AVAPPFDYIIGT-DVVYAE---HLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       141 ~~~~~fD~Ii~~-d~~y~~---~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                       ..++||+|++. .++++.   .....+++.+.++|+|||.+++..
T Consensus        98 -~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          98 -INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             -CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence             25689999975 555443   356668999999999999988754

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=1.8e-16  Score=117.27  Aligned_cols=109  Identities=15%  Similarity=0.270  Sum_probs=87.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      +.++|++|||+|||+|.+|+.++.+|+ +|+++|. +++++.+++|++.++..            .++++.+.|+...  
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~------------~~~~ii~~D~~~~--   76 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE------------NRFTLLKMEAERA--   76 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG------------GGEEEECSCHHHH--
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc------------cchhhhccccccc--
Confidence            457899999999999999999999987 6999999 67999999999988753            5788888766432  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~  184 (222)
                      +....++||+|++.+| |........+..+..  +|+|+|.+++....
T Consensus        77 l~~~~~~fDiIf~DPP-y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          77 IDCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             HHHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ccccccccceeEechh-hccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            2334678999998655 666677777887764  58999998886543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.2e-16  Score=120.66  Aligned_cols=159  Identities=17%  Similarity=0.067  Sum_probs=108.9

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      ....|.+++.+..       ...++.+|||+|||+|..++.+|++|++||++|+ +++++.++++............-..
T Consensus        29 ~~~~l~~~~~~~l-------~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~  101 (229)
T d2bzga1          29 GHQLLKKHLDTFL-------KGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG  101 (229)
T ss_dssp             CCHHHHHHHHHHH-------TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred             CCHHHHHHHHHhc-------CCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence            4667888876542       3447789999999999999999999999999999 5699988877654322110000000


Q ss_pred             ----CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcCh------
Q 027530          120 ----GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRST------  187 (222)
Q Consensus       120 ----~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------  187 (222)
                          .....++++...|+.+..  ......||+|+...++++.  +.....++.+.++|+|||.+++....+..      
T Consensus       102 ~~~~~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gp  179 (229)
T d2bzga1         102 TKVFKSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGP  179 (229)
T ss_dssp             CEEEEETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCS
T ss_pred             cceeeecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCC
Confidence                012346777775553322  2346789999999888764  56788999999999999998887765432      


Q ss_pred             ---hHHHHHHHHHhcCCeEEEecC
Q 027530          188 ---SVHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       188 ---~~~~~f~~~~~~~~~v~~v~~  208 (222)
                         -...++.+.+...|.++.+..
T Consensus       180 p~~~~~~el~~lf~~~~~i~~le~  203 (229)
T d2bzga1         180 PFYVPHAEIERLFGKICNIRCLEK  203 (229)
T ss_dssp             SCCCCHHHHHHHHTTTEEEEEEEE
T ss_pred             CCCCCHHHHHHHhcCCCEEEEEEE
Confidence               123445555566777765543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=1.3e-15  Score=119.41  Aligned_cols=107  Identities=15%  Similarity=0.114  Sum_probs=84.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++.+|||||||+|..+..+++.    +++|+|+|. ++|++.|+++++..+.            ..++.+...|..+  
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~------------~~~~~~~~~d~~~--  103 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS------------EIPVEILCNDIRH--  103 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC------------SSCEEEECSCTTT--
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc------------cchhhhccchhhc--
Confidence            36689999999999999999864    668999999 6699999999886542            2355555533322  


Q ss_pred             cccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          138 HIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                         .....+|+|+++.++++.  +....+++.+.+.|+|||.+++....+.
T Consensus       104 ---~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         104 ---VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             ---CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             ---cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence               234689999999998775  4677899999999999999999876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.64  E-value=9.5e-16  Score=124.25  Aligned_cols=104  Identities=16%  Similarity=0.132  Sum_probs=86.4

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+..+|||+|||+|..++.+++.   +++|+++|+ +++++.+++++...+              .++++...|..+. 
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--------------~~~~f~~~d~~~~-   89 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--------------YDSEFLEGDATEI-   89 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--------------SEEEEEESCTTTC-
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--------------ccccccccccccc-
Confidence            346679999999999999999875   568999999 569999999988654              3577777665433 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        +. .++||+|+++.++++.++...+++.+.+.|||||.+++..+
T Consensus        90 --~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          90 --EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             --CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             --cc-cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence              22 45799999999999999999999999999999999988764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=4.4e-16  Score=128.32  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=85.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++|++|||||||+|++++.+|++|+ +|+++|.+++...++++++.|+..            .++.+...+..+.   
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~------------~~v~~~~~~~~~~---   94 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLD------------HVVTIIKGKVEEV---   94 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCT------------TTEEEEESCTTTC---
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCc------------cccceEeccHHHc---
Confidence            356889999999999999999999997 699999977778888889888753            5789988665543   


Q ss_pred             cccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEE
Q 027530          140 KAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      ....++||+|++..+.+   +...++.++..+.++|+|||.++
T Consensus        95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            33467999999865543   35678999999999999999886

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=5.6e-16  Score=128.30  Aligned_cols=103  Identities=23%  Similarity=0.271  Sum_probs=85.6

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .++|++|||||||+|++++.+|++|+ +|+++|.++++..++++++.|+.            ..++.+...+..+   ..
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~------------~~~i~~i~~~~~~---l~  100 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF------------SDKITLLRGKLED---VH  100 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC------------TTTEEEEESCTTT---SC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc------------cccceEEEeehhh---cc
Confidence            45889999999999999999999998 69999998888899999998875            3688888866544   34


Q ss_pred             ccCCCccEEEEecccc---CccCHHHHHHHHHHhcCCCeEEE
Q 027530          141 AVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y---~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .++++||+|++..+.+   +......++..+.++|||||+++
T Consensus       101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            4568999999865554   45678889999999999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.62  E-value=6.2e-16  Score=117.89  Aligned_cols=146  Identities=14%  Similarity=-0.031  Sum_probs=97.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...+|.+|||+|||+|..++.+|+.|.+|+++|+ ++|++.+++++............ .......+.+...++.+..  
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~l~--   93 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDF-KVYAAPGIEIWCGDFFALT--   93 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTE-EEEECSSSEEEEECCSSST--
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhh-hhccccccceecccccccc--
Confidence            3457899999999999999999999999999999 55999999887543321100000 0001234566666654332  


Q ss_pred             cccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEEEcChh---------HHHHHHHHHhcCCeEEEecC
Q 027530          140 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS---------VHEQMLQMWKSNFNVKLVPK  208 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~r~~~---------~~~~f~~~~~~~~~v~~v~~  208 (222)
                      ......||+|+++.++++..  ....+++.+.++|||||.+++....+...         ..+.+.+.+...|.++.+..
T Consensus        94 ~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~  173 (201)
T d1pjza_          94 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGG  173 (201)
T ss_dssp             HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEE
T ss_pred             cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEE
Confidence            12346899999998887643  46779999999999999988876543321         12333344456777765544


Q ss_pred             C
Q 027530          209 A  209 (222)
Q Consensus       209 ~  209 (222)
                      .
T Consensus       174 ~  174 (201)
T d1pjza_         174 Q  174 (201)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=4.8e-15  Score=119.96  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=86.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|.+|||||||+|.+++.+++. |++|+++|+ ++.++.+++.++..++.            ..+.+...|+.+   
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~------------~~~~~~~~d~~~---  113 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN------------RSRQVLLQGWED---  113 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS------------SCEEEEESCGGG---
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc------------cchhhhhhhhhh---
Confidence            4567899999999999999988865 899999999 56999999988877642            456666544332   


Q ss_pred             ccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         .+++||.|++.+++.+.  .....+++.+.++|||||++++....
T Consensus       114 ---~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         114 ---FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             ---CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence               25789999999999886  45688999999999999999986643

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.62  E-value=1.3e-15  Score=116.77  Aligned_cols=123  Identities=18%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             cCeEEEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hh
Q 027530           19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE   96 (222)
Q Consensus        19 ~~~~~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~   96 (222)
                      ....+.++|+++....+.     .++.+-+.          ..+++|++|||+|||+|.+++.++.+|+ +|+++|+ ++
T Consensus        18 ~~~~~~leQy~T~~~~a~-----~~~~~~~~----------~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~   82 (197)
T d1ne2a_          18 GNFKNYLEQYPTDASTAA-----YFLIEIYN----------DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD   82 (197)
T ss_dssp             C--------CCCCHHHHH-----HHHHHHHH----------HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCcccccCCCCHHHHH-----HHHHHHHH----------cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH
Confidence            345678899886544431     11111111          2467899999999999999999999987 5999999 66


Q ss_pred             hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--CHHHHHHHHHHhcCC
Q 027530           97 VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGP  174 (222)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~  174 (222)
                      +++.+++|+.                  ++.+...|+.+      .+++||+||+++++-...  .-..+++..   +..
T Consensus        83 a~~~ar~N~~------------------~~~~~~~D~~~------l~~~fD~Vi~NPPfg~~~~~~D~~fl~~a---~~~  135 (197)
T d1ne2a_          83 AIETAKRNCG------------------GVNFMVADVSE------ISGKYDTWIMNPPFGSVVKHSDRAFIDKA---FET  135 (197)
T ss_dssp             HHHHHHHHCT------------------TSEEEECCGGG------CCCCEEEEEECCCC-------CHHHHHHH---HHH
T ss_pred             HHHHHHHccc------------------cccEEEEehhh------cCCcceEEEeCcccchhhhhchHHHHHHH---Hhc
Confidence            9999998864                  45666655432      257899999998862211  112344443   334


Q ss_pred             CeEEEEEEE
Q 027530          175 KTTILLGYE  183 (222)
Q Consensus       175 ~g~~~l~~~  183 (222)
                      +..+|..+.
T Consensus       136 ~~~iy~ih~  144 (197)
T d1ne2a_         136 SMWIYSIGN  144 (197)
T ss_dssp             EEEEEEEEE
T ss_pred             CCeEEEehh
Confidence            455555443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=9.2e-16  Score=124.85  Aligned_cols=111  Identities=16%  Similarity=0.173  Sum_probs=82.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .+++|||||||+|..++.+++.|.+|+++|+ ++|++.|+++...++...         ......+...+|...+.....
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  126 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP---------AFDKWVIEEANWLTLDKDVPA  126 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSH---------HHHTCEEEECCGGGHHHHSCC
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhccccc---------ccceeeeeeccccccccccCC
Confidence            4679999999999999999999999999999 569999999987765321         112345555555433222223


Q ss_pred             CCCccEEEEe-ccccCc-------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGT-DVVYAE-------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~-d~~y~~-------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..+||.|++. +++.+.       .....+++.+.++|||||.+++...
T Consensus       127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            5789999875 455442       2356799999999999999988664

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=1.3e-14  Score=112.63  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             cccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhc
Q 027530           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        35 g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      +.+.|+.-. .||..+.....     -...+|.+|||||||+|.....++...  .+|+++|+ ++|++.++++++..+ 
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~-----l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-  104 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHR-----LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-  104 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCC-----CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-
T ss_pred             ceeeeCCcchHHHHHHhcccc-----CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-
Confidence            446777432 44555543211     245678999999999999999998763  37999999 679999998877543 


Q ss_pred             cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh--
Q 027530          111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--  188 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~--  188 (222)
                                    ++.+...+..+..........+|+|+. + +++......+++.+.+.|||||.++++...+...  
T Consensus       105 --------------ni~~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~  168 (209)
T d1nt2a_         105 --------------NIIPLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDST  168 (209)
T ss_dssp             --------------SEEEECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTT
T ss_pred             --------------CceEEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCC
Confidence                          677777665544333222334555543 3 4556667789999999999999999987654321  


Q ss_pred             -----HHHHHHHHHhcCCeEEE
Q 027530          189 -----VHEQMLQMWKSNFNVKL  205 (222)
Q Consensus       189 -----~~~~f~~~~~~~~~v~~  205 (222)
                           ......+..+.+|++.+
T Consensus       169 ~~~~~~~~~~~~~l~~gf~i~E  190 (209)
T d1nt2a_         169 AEPEEVFKSVLKEMEGDFKIVK  190 (209)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEEE
Confidence                 22333334456898744

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.1e-15  Score=122.08  Aligned_cols=105  Identities=21%  Similarity=0.244  Sum_probs=81.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++|++|||||||+|++++.+|+.|+ +|+++|.++....+++++..|+.            ..++.+...+..+   .
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~------------~~~i~~~~~~~~~---l   96 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL------------EDTITLIKGKIEE---V   96 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC------------TTTEEEEESCTTT---S
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCC------------CccceEEEeeHHH---h
Confidence            567899999999999999999999997 69999996644566777777663            3688888855544   3


Q ss_pred             cccCCCccEEEEeccccC---ccCHHHHHHHHHHhcCCCeEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~---~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      .....+||+|++..+.+.   ...++.++....++|+|||+++-
T Consensus        97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            344679999998655443   34567788888899999998863

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.60  E-value=9.7e-15  Score=116.42  Aligned_cols=103  Identities=16%  Similarity=0.099  Sum_probs=84.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +.++|||||||+|..++.+++..  .+++++|.+++++.+++++...++            ..++++...|..+.     
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~------------~~rv~~~~~D~~~~-----  142 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL------------SDRVDVVEGDFFEP-----  142 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC------------TTTEEEEECCTTSC-----
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc------------ccchhhccccchhh-----
Confidence            45799999999999999999884  478999998899999999987764            35889998765432     


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ...+||+|+++.++++...  ...+++.+.+.|+|||++++...
T Consensus       143 ~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         143 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            2357999999999987644  35789999999999999998764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=7.7e-15  Score=120.80  Aligned_cols=138  Identities=14%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-cc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  140 (222)
                      .+|++|||+|||+|..++.+|..+++|+++|. +.+++.+++|++.|++             .++++...|..+... ..
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-------------~~~~~i~~d~~~~~~~~~  210 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-------------GNVRVLEANAFDLLRRLE  210 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-------------TTEEEEESCHHHHHHHHH
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-------------CCcceeeccHHHHhhhhH
Confidence            37899999999999999999887778999999 5699999999999985             367888766543211 22


Q ss_pred             ccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-----hcCCeEEEe
Q 027530          141 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV  206 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-----~~~~~v~~v  206 (222)
                      ...++||+|++.++-+...         ....++..+.++|+|||.++++.-...-. ...|.+.+     ..+.++..+
T Consensus       211 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~-~~~f~~~v~~a~~~a~~~~~~~  289 (318)
T d1wxxa2         211 KEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPLFYAMVAEAAQDAHRLLRVV  289 (318)
T ss_dssp             HTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC-HHHHHHHHHHHHHHcCCCEEEE
Confidence            3467899999988765422         24457888888999999988765433222 34444443     234455555


Q ss_pred             cCCCCCcc
Q 027530          207 PKAKESTM  214 (222)
Q Consensus       207 ~~~~~~~~  214 (222)
                      .....+.+
T Consensus       290 ~~~~~~~D  297 (318)
T d1wxxa2         290 EKRGQPFD  297 (318)
T ss_dssp             EEECCCTT
T ss_pred             EecCCCCC
Confidence            44333333

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=2e-15  Score=120.30  Aligned_cols=107  Identities=14%  Similarity=0.047  Sum_probs=84.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ++++|||||||+|.....+++.+. +|+|+|. ++|++.|++.....+.            ..++.+.+.|.....  ..
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~------------~~~v~f~~~D~~~~~--~~   89 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR------------RFKVFFRAQDSYGRH--MD   89 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC------------SSEEEEEESCTTTSC--CC
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC------------CcceEEEEcchhhhc--cc
Confidence            678999999999998888888876 7999999 5699999988765542            246788886654321  12


Q ss_pred             cCCCccEEEEeccccCc----cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      ..++||+|++..++++.    .....+++.+.++|+|||.+++..+.
T Consensus        90 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          90 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            36789999999988764    34567899999999999999887653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=2.3e-14  Score=116.42  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=91.4

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSG  120 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (222)
                      ....+++.+.       ....+|.+|||||||.|-+++.+| +.|++|+++++ ++.++.+++.+...++.         
T Consensus        47 ~~k~~~~~~~-------l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~---------  110 (291)
T d1kpia_          47 YAKRKLALDK-------LNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP---------  110 (291)
T ss_dssp             HHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS---------
T ss_pred             HHHHHHHHHh-------cCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc---------
Confidence            3445555555       356689999999999999999877 56999999999 55889999888877643         


Q ss_pred             CCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          121 NLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       121 ~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         .++.+...|+.      ..+++||.|++-.++.|..         ..+.+++.+.++|+|||++++....
T Consensus       111 ---~~v~~~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         111 ---RRKEVRIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             ---SCEEEEECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             ---hhhhhhhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence               46666664432      2367899999999997753         3688999999999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=5.5e-15  Score=118.02  Aligned_cols=125  Identities=11%  Similarity=0.028  Sum_probs=91.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+.+|||+|||+|.++..++.. +.+|+++|. ++|++.|+++....               .++++.+.+..   ...
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---------------~~~~~~~~d~~---~~~  153 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---------------PVGKFILASME---TAT  153 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---------------SEEEEEESCGG---GCC
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---------------ccceeEEcccc---ccc
Confidence            35679999999999999877654 557999999 66999998775422               35677775543   333


Q ss_pred             ccCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEEcCh-------------hHHHHHHHHHh-cCCeEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVK  204 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~r~~-------------~~~~~f~~~~~-~~~~v~  204 (222)
                      ..+++||+|++..+++|..+  ...+++.+++.|+|||.+++.......             .....|.+.++ .+|++.
T Consensus       154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii  233 (254)
T d1xtpa_         154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV  233 (254)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred             cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence            44679999999999988654  457899999999999999987643221             01345666664 588764


Q ss_pred             E
Q 027530          205 L  205 (222)
Q Consensus       205 ~  205 (222)
                      .
T Consensus       234 ~  234 (254)
T d1xtpa_         234 K  234 (254)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.6e-14  Score=117.03  Aligned_cols=118  Identities=14%  Similarity=0.151  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      -..+.+++.+.       ....+|.+|||||||.|-+++.+|+ .|++|+++++ ++.++.+++.++..++         
T Consensus        47 Q~~k~~~~~~~-------l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~---------  110 (285)
T d1kpga_          47 QIAKIDLALGK-------LGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN---------  110 (285)
T ss_dssp             HHHHHHHHHTT-------TTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC---------
T ss_pred             HHHHHHHHHHH-------cCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh---------
Confidence            33445666655       3566899999999999999997664 5899999999 5689999998887664         


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCc--cCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~--~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                         ..++++...|+.+.      +++||.|++-..+.+.  .....+++.+.++|+|||++++....
T Consensus       111 ---~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         111 ---LRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             ---CSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ---hhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence               36888888666432      4689999999999876  45688999999999999999986654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=4.4e-15  Score=111.74  Aligned_cols=118  Identities=21%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN  121 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (222)
                      ..|..|+...         ..+|++|||+|||+|..|+.++..|++|+++|. +++++.+++|++.++..          
T Consensus        29 e~lf~~l~~~---------~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~----------   89 (171)
T d1ws6a1          29 KALFDYLRLR---------YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG----------   89 (171)
T ss_dssp             HHHHHHHHHH---------CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC----------
T ss_pred             HHHHHHhhcc---------ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc----------
Confidence            3555666643         347789999999999999999999999999999 66999999999998753          


Q ss_pred             CCCceEEEEeecCCC-ccccccCCCccEEEEeccccCccCHHHHHHHHH-HhcCCCeEEEEEEEE
Q 027530          122 LLGSIQAVELDWGNE-DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEI  184 (222)
Q Consensus       122 ~~~~v~~~~~d~~~~-~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~-~~l~~~g~~~l~~~~  184 (222)
                        .+  +...+.... ........+||+|++.+| |.......+...+. .+|+|+|.+++.++.
T Consensus        90 --~~--v~~~~~d~~~~~~~~~~~~fD~If~DPP-Y~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1          90 --AR--VVALPVEVFLPEAKAQGERFTVAFMAPP-YAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             --CE--EECSCHHHHHHHHHHTTCCEEEEEECCC-TTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             --cc--eeeeehhcccccccccCCccceeEEccc-cccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence              22  332221111 011234578999998766 55444444444443 468999988876543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.56  E-value=4.6e-14  Score=114.93  Aligned_cols=151  Identities=17%  Similarity=0.100  Sum_probs=103.7

Q ss_pred             cceEEEeEcCeEEEEeeCCCCccccccccc--hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE
Q 027530           11 TSVINLEVLGHQLQFSQDPNSKHLGTTVWD--ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN   88 (222)
Q Consensus        11 ~~~~~~~~~~~~~~i~q~~~~~~~g~~~W~--~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~   88 (222)
                      .....++..|-.+.+.-.. +..+|...--  .-..+++++..          .-++++||||+||+|..++.++..|++
T Consensus        88 p~~~~v~e~gl~f~v~~~~-~~~tG~f~dqr~nr~~~~~~~~~----------~~~~~rVLdlf~~tG~~sl~aa~~GA~  156 (309)
T d2igta1          88 GETWPLSLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVET----------ADRPLKVLNLFGYTGVASLVAAAAGAE  156 (309)
T ss_dssp             CSEEEEEETTEEEEEECCS-SSCCSCCGGGHHHHHHHHHHHHH----------SSSCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             CCeEEEEEeEEEEEEeccC-CCccccccchhHHHHHHHHHHhh----------ccCCCeEEEecCCCcHHHHHHHhCCCe
Confidence            3445666666666665433 5566654211  11233334432          236789999999999999999999999


Q ss_pred             EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCc--------
Q 027530           89 VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE--------  158 (222)
Q Consensus        89 v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~--------  158 (222)
                      ||++|. ..+++.+++|++.|++.           ..+++++..|..+... ......+||+||+.++-|..        
T Consensus       157 V~~VD~s~~al~~a~~N~~ln~~~-----------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~  225 (309)
T d2igta1         157 VTHVDASKKAIGWAKENQVLAGLE-----------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQ  225 (309)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCT-----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEE
T ss_pred             EEEEeChHHHHHHHHHhhhhhccc-----------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHH
Confidence            999999 55999999999999864           3468888755433211 11235789999998887632        


Q ss_pred             --cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          159 --HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       159 --~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        .....++..+.++|+|+|.++++..
T Consensus       226 ~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         226 LFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence              2355678888999999997665543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=4e-14  Score=111.28  Aligned_cols=150  Identities=11%  Similarity=0.078  Sum_probs=105.3

Q ss_pred             cccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhc
Q 027530           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        35 g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      ..+.|+.-. -||..+...+..    -...+|.+|||||||+|..+..+|..+  ..|+++|+ +.|++.+++++..+  
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~----l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--  121 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKV----MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--  121 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--
T ss_pred             eeeeECCCccHHHHHHHhhHHh----CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--
Confidence            456777544 555555543210    245678999999999999999999875  47999999 66999998876543  


Q ss_pred             cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChh--
Q 027530          111 RISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--  188 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~--  188 (222)
                                   .++..+..+......  ..+..+|++++...+++......+++.+.+.|||||.++++...+...  
T Consensus       122 -------------~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~  186 (230)
T d1g8sa_         122 -------------ENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT  186 (230)
T ss_dssp             -------------TTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS
T ss_pred             -------------cccceEEEeeccCcc--cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC
Confidence                         356666666554432  235567777666677777888889999999999999999987765531  


Q ss_pred             -----HHHHHHHHHh-cCCeEEE
Q 027530          189 -----VHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       189 -----~~~~f~~~~~-~~~~v~~  205 (222)
                           ...+..+.++ .+|++.+
T Consensus       187 ~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         187 KDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             SCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEE
Confidence                 2334444553 5897643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.1e-14  Score=120.20  Aligned_cols=121  Identities=15%  Similarity=0.130  Sum_probs=90.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc-ccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED-HIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~  140 (222)
                      +|++|||+|||+|..++.++..|+ +|+++|. +++++.+++|++.|++.            .++++...|..+.. ...
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~------------~~~~~~~~d~~~~~~~~~  212 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE------------DRMKFIVGSAFEEMEKLQ  212 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHHHH
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC------------ccceeeechhhhhhHHHH
Confidence            588999999999999999999987 6999999 66999999999999964            46788775543221 122


Q ss_pred             ccCCCccEEEEeccccCcc---------CHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH
Q 027530          141 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  197 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~---------~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~  197 (222)
                      ....+||+|++.++.+...         ....++..+.++|+|||.++++.-...-. .+.|.+.+
T Consensus       213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v  277 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMI  277 (324)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred             hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHH
Confidence            2457899999887765432         24557888888999999988876544432 35665554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.54  E-value=3.9e-14  Score=116.32  Aligned_cols=148  Identities=14%  Similarity=0.077  Sum_probs=101.2

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-c
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-I  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~  139 (222)
                      .+|++|||++||+|..|+.++..|+ +|+++|. +.+++.+++|++.|++.           ..++++++.|..+... .
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~-----------~~~~~~i~~d~~~~l~~~  211 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD-----------MANHQLVVMDVFDYFKYA  211 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC-----------CTTEEEEESCHHHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc-----------CcceEEEEccHHHHHHHH
Confidence            3689999999999999999998888 6999999 56999999999999863           3578888855432211 1


Q ss_pred             cccCCCccEEEEeccccCc---------cCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-----cCCeEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVKL  205 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~---------~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-----~~~~v~~  205 (222)
                      .....+||+||..++-+..         ..+..+++.+.++|+|||.++++.....-. .+.|.+.+.     .+..+..
T Consensus       212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~~~f~~~v~~a~~~~~~~~~~  290 (317)
T d2b78a2         212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQIEKGFGKQKHTYLD  290 (317)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHTTCCCEEEE
T ss_pred             HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-HHHHHHHHHHHHHHcCCeEEE
Confidence            2235689999999886642         135668888899999999999877644332 344544432     2444443


Q ss_pred             ecC--CCCCcccCCCCCCC
Q 027530          206 VPK--AKESTMWGNPLGLY  222 (222)
Q Consensus       206 v~~--~~~~~~~~~~~~~~  222 (222)
                      +..  .+.+-....++|.|
T Consensus       291 ~~~~~~DfP~~~~~pe~~Y  309 (317)
T d2b78a2         291 LQQLPSDFAVNVQDESSNY  309 (317)
T ss_dssp             EECCCTTSCCCTTCGGGCC
T ss_pred             eccCCCCCCCCCCCCCCCC
Confidence            321  12333335555655

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=9.1e-14  Score=107.04  Aligned_cols=121  Identities=21%  Similarity=0.270  Sum_probs=80.5

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+++|++|||+|||+|.+++.++..|+ +|+++|+ +++++.+++|++.++.              +..+...|...   
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--------------~~~~~~~d~~~---  105 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--------------KFKVFIGDVSE---  105 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--------------SEEEEESCGGG---
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--------------CceEEECchhh---
Confidence            577999999999999999999999987 7999999 5699999999887653              45666644322   


Q ss_pred             ccccCCCccEEEEeccccCccCH--HHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH--hcCCeEEEe
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW--KSNFNVKLV  206 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~--~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~--~~~~~v~~v  206 (222)
                         .+.+||+|++++++......  ..++..   .+.+++.++..+.....  ...+.+..  ..++.++..
T Consensus       106 ---~~~~fD~Vi~nPP~~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~~~--~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         106 ---FNSRVDIVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIHLAKPE--VRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             ---CCCCCSEEEECCCCSSSSTTTTHHHHHH---HHHHCSEEEEEEECCHH--HHHHHHHHHHHTTEEEEEE
T ss_pred             ---hCCcCcEEEEcCccccccccccHHHHHH---HHhhcccchhcccchHH--HHHHHHHHHhhcCceEEEE
Confidence               25789999999886443221  233333   33345566655433222  23444443  335555443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.7e-14  Score=109.62  Aligned_cols=108  Identities=14%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...+++||||+||+|.+|+.++.+|+ +|+++|. .++++.+++|++.++.             .++.+...|+.+.  +
T Consensus        41 ~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-------------~~~~ii~~d~~~~--l  105 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-------------GNARVVNSNAMSF--L  105 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-------------CSEEEECSCHHHH--H
T ss_pred             ccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-------------cceeeeeeccccc--c
Confidence            34778999999999999999999998 5999999 6799999999987653             3567766544322  2


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~r  185 (222)
                      .....+||+|++.+| |.......++..+.+  +|+++|.+++.+..+
T Consensus       106 ~~~~~~fDlIf~DPP-Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         106 AQKGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVE  152 (183)
T ss_dssp             SSCCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             cccccccCEEEEcCc-cccchHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence            234678999998766 667778888888876  489999988866543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=2.9e-14  Score=109.92  Aligned_cols=95  Identities=13%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++.+|||||||+|..+..+    .+++++|. +++++.++++                    ++.+.+.+.   ...+..
T Consensus        36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~--------------------~~~~~~~d~---~~l~~~   88 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR--------------------GVFVLKGTA---ENLPLK   88 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT--------------------TCEEEECBT---TBCCSC
T ss_pred             CCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc--------------------ccccccccc---cccccc
Confidence            3458999999999876665    35799999 5688887652                    346666443   334455


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +++||+|+++.++++.++...+++.+.++|+|||.+++.....
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            7899999999999999999999999999999999999987643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.6e-14  Score=115.28  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             CeEEEeCCCccHHHHHHHHh------C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEE--EEeecC
Q 027530           66 KRVIELGAGCGVAGFGMALL------G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA--VELDWG  134 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~------g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~--~~~d~~  134 (222)
                      .+|||+|||+|..+..++..      +  .+++++|. +.|++.+++++....            ....+.+  ...++.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~------------~~~~~~~~~~~~~~~  109 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS------------NLENVKFAWHKETSS  109 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC------------SCTTEEEEEECSCHH
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc------------ccccccccchhhhhh
Confidence            47999999999988776643      2  25899999 559999999876432            1123332  222211


Q ss_pred             CC---ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcC
Q 027530          135 NE---DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  186 (222)
Q Consensus       135 ~~---~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~  186 (222)
                      +.   ......+++||+|++..++|+.+++..+++.+.++|+|||.+++......
T Consensus       110 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         110 EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             HHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            10   01123468999999999999999999999999999999999988775443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=9.7e-14  Score=107.84  Aligned_cols=100  Identities=25%  Similarity=0.244  Sum_probs=76.6

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||||||+|..+..+|+. +  .+|+++|. +++++.+++|++..+.             .++.+..   ++.
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-------------~n~~~~~---~d~  135 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-------------ENVIFVC---GDG  135 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEE---SCG
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-------------ccccccc---Cch
Confidence            4668899999999999999999875 3  47999998 6799999999988764             3666665   333


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .......++||+|+++..+.+.  .    +.+.+.|+|||++++..
T Consensus       136 ~~~~~~~~~fD~I~~~~~~~~~--p----~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVTVGVDEV--P----ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGCCGGGCCEEEEEECSBBSCC--C----HHHHHHEEEEEEEEEEB
T ss_pred             HHccccccchhhhhhhccHHHh--H----HHHHHhcCCCcEEEEEE
Confidence            3333446789999998877543  2    34567799999987743

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=2.8e-13  Score=108.18  Aligned_cols=124  Identities=16%  Similarity=0.209  Sum_probs=91.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|+ +++++.+++|++.|++.            .++++.+.|..+..    
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~------------~~v~~~~~D~~~~~----  170 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE------------DRMSAYNMDNRDFP----  170 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT------------TTEEEECSCTTTCC----
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC------------ceEEEEEcchHHhc----
Confidence            678999999999999999998885 8999999 67999999999999864            57899987765442    


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh----hHHHHHHHHH-hcCCeEEEec
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMW-KSNFNVKLVP  207 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~----~~~~~f~~~~-~~~~~v~~v~  207 (222)
                      ....||.|+++++.+.    ..++..+.+++++||.+.+-......    ...+.+.+.. ..++.++.+.
T Consensus       171 ~~~~~D~Ii~~~p~~~----~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~  237 (260)
T d2frna1         171 GENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  237 (260)
T ss_dssp             CCSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCCEEEECCCCch----HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence            2568999998877543    34666777889999988654333222    1233343433 3467765443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.49  E-value=5.1e-14  Score=106.83  Aligned_cols=111  Identities=15%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|++||||+||+|.+|+.++..|+ +|+++|. .++++.+++|++.++..            .++++...|..+...
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~------------~~~~i~~~D~~~~l~  105 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP------------EKFEVRKMDANRALE  105 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHHH
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc------------cccccccccchhhhh
Confidence            456899999999999999999999999 5999999 66999999999988743            478888766543211


Q ss_pred             -ccccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEE
Q 027530          139 -IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  184 (222)
Q Consensus       139 -~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~  184 (222)
                       ......+||+|++.+| |.......++..+.+  +|+++|.+++.+..
T Consensus       106 ~~~~~~~~fDlIflDPP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhcccCCCcceEEechh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence             1123568999997766 666777788888754  59999988776543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=115.03  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhcccccc---------CCCCC-------C
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM---------NPGSG-------N  121 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------~~~~~-------~  121 (222)
                      +...+|++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+.......         .....       .
T Consensus        47 ~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          47 PGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             TTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            3456788999999999999888887776 5999999 559999999987654321000         00000       0


Q ss_pred             CCCceE-EEEeecC-CCccccccCCCccEEEEeccccCc----cCHHHHHHHHHHhcCCCeEEEEEEEEcC---------
Q 027530          122 LLGSIQ-AVELDWG-NEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRS---------  186 (222)
Q Consensus       122 ~~~~v~-~~~~d~~-~~~~~~~~~~~fD~Ii~~d~~y~~----~~~~~ll~~~~~~l~~~g~~~l~~~~r~---------  186 (222)
                      ....+. ....+.. +....+...++||+|++..++++.    +....+++.+.++|||||.+++......         
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~  206 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE  206 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccc
Confidence            000111 1111111 111123346789999999998764    3566789999999999999998764322         


Q ss_pred             ----hhHHHHHHHHHh-cCCeEEEec
Q 027530          187 ----TSVHEQMLQMWK-SNFNVKLVP  207 (222)
Q Consensus       187 ----~~~~~~f~~~~~-~~~~v~~v~  207 (222)
                          ....+.+.+.++ .||++..+.
T Consensus       207 ~~~~~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         207 FSCVALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccCCCHHHHHHHHHHCCCEEEEEE
Confidence                112456666664 699876653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.48  E-value=1.1e-13  Score=109.91  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=88.8

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||+|||+|.+++.+|+. +  .+|+++|. +++++.|++|++.+..            ..++++...|+.+.
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~------------~~nv~~~~~Di~~~  149 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD------------IGNVRTSRSDIADF  149 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC------------CTTEEEECSCTTTC
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC------------CCceEEEEeeeecc
Confidence            5668999999999999999999975 3  47999999 6699999999987652            35888888776543


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCe
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  202 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~  202 (222)
                      .    .+..||.|+..     ......+++.+.+.|||||++++..+.-  .......+.++ .+|.
T Consensus       150 ~----~~~~fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~gf~  205 (250)
T d1yb2a1         150 I----SDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMH  205 (250)
T ss_dssp             C----CSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEE
T ss_pred             c----ccceeeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHHHHHHCCCc
Confidence            2    35789999863     2345578999999999999987654422  12345555554 4664

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=5.3e-13  Score=104.46  Aligned_cols=150  Identities=18%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             cccccchHH-HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhh
Q 027530           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        35 g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      ..+.|+.-. .||..+...+..    ....+|.+|||||||+|..+..+|.. |  .+|+++|+ +++++.++++++..+
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~----l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~  122 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKN----FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR  122 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT
T ss_pred             eEEEECCCccHHHHHHHccccc----cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC
Confidence            456676322 344444433210    24568999999999999999999976 4  47999999 669999998876433


Q ss_pred             ccccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh--
Q 027530          110 SRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST--  187 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~--  187 (222)
                                     ++.....+.............+|+|+. + +.+......+++.+.+.|+|||.++++...+..  
T Consensus       123 ---------------~~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~  185 (227)
T d1g8aa_         123 ---------------NIVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV  185 (227)
T ss_dssp             ---------------TEEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCT
T ss_pred             ---------------CceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCeEEEEEECCccCC
Confidence                           556666565554444444567888875 3 334566778999999999999999998765432  


Q ss_pred             -----hHHHHHHHHHhcCCeEEE
Q 027530          188 -----SVHEQMLQMWKSNFNVKL  205 (222)
Q Consensus       188 -----~~~~~f~~~~~~~~~v~~  205 (222)
                           .......+..+++|++.+
T Consensus       186 ~~~~~~v~~~v~~l~~~gf~iie  208 (227)
T d1g8aa_         186 TKEPEQVFREVERELSEYFEVIE  208 (227)
T ss_dssp             TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEE
Confidence                 122222333356887643

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-14  Score=112.92  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|++|||||||+|..+..+++.+ .+|+++|+ +++++.++++.....              .++.....++.... ...
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~-~~~  117 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--------------HKVIPLKGLWEDVA-PTL  117 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--------------SEEEEEESCHHHHG-GGS
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--------------cccccccccccccc-ccc
Confidence            67899999999999999999875 47999999 669999998876443              34555654443221 123


Q ss_pred             cCCCccEEEE-----eccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          142 VAPPFDYIIG-----TDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       142 ~~~~fD~Ii~-----~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .+.+||.|+.     ...+++......+++.+.++|||||++.+.
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            4678999874     333344455777999999999999988764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-13  Score=105.55  Aligned_cols=105  Identities=20%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||+|||+|..+..+|++   ..+|+++|. +++++.+++|++..++...        ...++.+...   +.
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~--------~~~~~~~~~g---D~  141 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL--------SSGRVQLVVG---DG  141 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH--------HTSSEEEEES---CG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc--------cccceEEEEe---ec
Confidence            4557899999999999999988876   348999998 7799999999987654210        1235666663   33


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ........+||+|+....+.+.  .    ..+.+.|||||++++..
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~i--p----~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVV--P----QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSC--C----HHHHHTEEEEEEEEEEE
T ss_pred             ccccchhhhhhhhhhhcchhhc--C----HHHHhhcCCCcEEEEEE
Confidence            3333446789999998777432  2    34667899999988754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3e-13  Score=108.56  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=74.3

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .++.+|||+|||+|..+..+++.+  .+++++|+ ++|++.++++.                  .++.+...|.   ..+
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------~~~~~~~~d~---~~l  141 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------PQVTFCVASS---HRL  141 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------------------TTSEEEECCT---TSC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------------------ccccceeeeh---hhc
Confidence            466799999999999999999874  47999999 56998877542                  2567777444   445


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEc
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  185 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r  185 (222)
                      +..+++||+|++.....+       ++.+.++|||||.++++.+..
T Consensus       142 ~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         142 PFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             SBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred             cCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence            566889999998766543       467899999999999988754

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.44  E-value=3.4e-13  Score=107.58  Aligned_cols=103  Identities=14%  Similarity=0.051  Sum_probs=83.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      ..++|||||||+|..+..++++  +.+++++|++++++.++++++..+.            .+++.+...|..+.     
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~------------~~ri~~~~~d~~~~-----  143 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL------------ADRVTVAEGDFFKP-----  143 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC------------TTTEEEEECCTTSC-----
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC------------cceeeeeeeecccc-----
Confidence            3478999999999999999988  4579999999999999999987764            35788887554321     


Q ss_pred             cCCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+..||+|++..++++.+.  ...+++.+++.|+|||+++|...
T Consensus       144 ~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         144 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            2356999999999987643  45789999999999999998764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.44  E-value=3.5e-13  Score=105.23  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...+|.+|||+|||+|..+..+|+++.+|+++|. +++++.+++|+...               .++.+...|-   ...
T Consensus        67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---------------~nv~~~~~d~---~~g  128 (224)
T d1vbfa_          67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---------------NNIKLILGDG---TLG  128 (224)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---------------SSEEEEESCG---GGC
T ss_pred             hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---------------cccccccCch---hhc
Confidence            4568889999999999999999999999999998 67999998876532               4778877443   222


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .....+||.|+....+.+  .    ...+.+.|+|||++++.
T Consensus       129 ~~~~~pfD~Iiv~~a~~~--i----p~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         129 YEEEKPYDRVVVWATAPT--L----LCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CGGGCCEEEEEESSBBSS--C----CHHHHHTEEEEEEEEEE
T ss_pred             chhhhhHHHHHhhcchhh--h----hHHHHHhcCCCCEEEEE
Confidence            223578999998776532  2    24456789999998774

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=5.6e-13  Score=106.75  Aligned_cols=122  Identities=15%  Similarity=0.137  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCC
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      +..|.+++....       ......+|||+|||+|..++.+++.. ++|+++|+ +++++.|++|+++++..        
T Consensus        95 TE~lv~~~~~~~-------~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~--------  159 (271)
T d1nv8a_          95 TEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS--------  159 (271)
T ss_dssp             HHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT--------
T ss_pred             hhhhhhhhhhhh-------ccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC--------
Confidence            556666665542       11234589999999999999988664 57999999 67999999999999853        


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc--------------------CHHHHHHHHHHhcCCCeEEE
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------LLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~--------------------~~~~ll~~~~~~l~~~g~~~  179 (222)
                          .++.+...+|.+..  ....++||+|++|+++...+                    -..-+-+.+.++|+|+|.++
T Consensus       160 ----~~~~i~~~~~~~~~--~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~  233 (271)
T d1nv8a_         160 ----DRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL  233 (271)
T ss_dssp             ----TSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred             ----ceeEEeeccccccc--ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEE
Confidence                57788887876542  22347899999999864311                    01223344577899999988


Q ss_pred             EEEEE
Q 027530          180 LGYEI  184 (222)
Q Consensus       180 l~~~~  184 (222)
                      +-...
T Consensus       234 ~Eig~  238 (271)
T d1nv8a_         234 MEIGE  238 (271)
T ss_dssp             EECCT
T ss_pred             EEECH
Confidence            86653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.7e-14  Score=111.76  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             CCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhcccc---------ccCCCCCC-------
Q 027530           60 PSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS---------QMNPGSGN-------  121 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~---------~~~~~~~~-------  121 (222)
                      +...+|++|||+|||+|..++..+ +.+.+|+++|+ +.|++.+++++........         ...+....       
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            456789999999999998876555 45568999999 5599999987654321100         00000000       


Q ss_pred             -CCCceEEEEeecCCCcc---ccccCCCccEEEEeccccCcc----CHHHHHHHHHHhcCCCeEEEEEEEEcCh------
Q 027530          122 -LLGSIQAVELDWGNEDH---IKAVAPPFDYIIGTDVVYAEH----LLEPLLQTIFALSGPKTTILLGYEIRST------  187 (222)
Q Consensus       122 -~~~~v~~~~~d~~~~~~---~~~~~~~fD~Ii~~d~~y~~~----~~~~ll~~~~~~l~~~g~~~l~~~~r~~------  187 (222)
                       ......+...|......   .....++||+|++.-++.+..    ....+++.+.++|||||.+++....+..      
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~  209 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE  209 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCC
Confidence             00011222223322221   122345799999998886542    4677899999999999999987654331      


Q ss_pred             -------hHHHHHHHHH-hcCCeEEEecC
Q 027530          188 -------SVHEQMLQMW-KSNFNVKLVPK  208 (222)
Q Consensus       188 -------~~~~~f~~~~-~~~~~v~~v~~  208 (222)
                             -..+.+.+.+ +.||++..+..
T Consensus       210 ~~~~~~~~t~e~v~~~l~~aGf~v~~~~~  238 (263)
T d2g72a1         210 ARLTVVPVSEEEVREALVRSGYKVRDLRT  238 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence                   1245555555 45898765443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=7.5e-13  Score=105.64  Aligned_cols=118  Identities=17%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||+|||+|..++.+|+. |  .+|+++|. +++++.|++|++.-...          ...++.+...|.   
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~----------~~~nv~~~~~d~---  159 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ----------PPDNWRLVVSDL---  159 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS----------CCTTEEEECSCG---
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC----------CCceEEEEeccc---
Confidence            4568999999999999999999986 4  47999999 67999999999864321          235778877444   


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      .+....+..||.|+..     .......+..+.++|||||.+.+..+.-.+  .....+.++
T Consensus       160 ~~~~~~~~~fDaV~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q--v~~~~~~l~  214 (264)
T d1i9ga_         160 ADSELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATVTQ--LSRIVEALR  214 (264)
T ss_dssp             GGCCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSHHH--HHHHHHHHH
T ss_pred             ccccccCCCcceEEEe-----cCCHHHHHHHHHhccCCCCEEEEEeCccCh--HHHHHHHHH
Confidence            3334457899999863     345567899999999999998665543322  345555553

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1e-12  Score=105.24  Aligned_cols=123  Identities=13%  Similarity=0.013  Sum_probs=89.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||+|||+|..++.+|+.   +++|+++|. +++++.|++|++..++.            .++.+...|.   
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~------------~~v~~~~~d~---  164 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI------------ERVTIKVRDI---  164 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG------------GGEEEECCCG---
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc------------cCcEEEeccc---
Confidence            5678999999999999999999976   358999999 67999999999987743            4566655332   


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEEe
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  206 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~v  206 (222)
                      . .......||.|+.     +......+++.+.++|||||++++..+.-  ....+..+.++ .+|...++
T Consensus       165 ~-~~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~~l~~~gF~~i~~  227 (266)
T d1o54a_         165 S-EGFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIEV  227 (266)
T ss_dssp             G-GCCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEEE
T ss_pred             c-ccccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHHHHHHCCceeEEE
Confidence            1 1223567888874     34566789999999999999987655432  22355566664 47754333

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.41  E-value=3.6e-13  Score=102.18  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+.+||||.||||.+|+.++.+|| +|+++|. .++++.+++|++..+..           .....+...+..+.....
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~-----------~~~~~~~~~d~~~~l~~~  110 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-----------SEQAEVINQSSLDFLKQP  110 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-----------TTTEEEECSCHHHHTTSC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc-----------cccccccccccccccccc
Confidence            4778999999999999999999999 6999999 66999999999876532           224455543322211112


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHH--hcCCCeEEEEEEEEcC
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIRS  186 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~--~l~~~g~~~l~~~~r~  186 (222)
                      ....+||+|++.+| |.......++..+..  +|+++|.+++-+..+.
T Consensus       111 ~~~~~fDlIFlDPP-Y~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~~  157 (183)
T d2ifta1         111 QNQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK  157 (183)
T ss_dssp             CSSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             ccCCcccEEEechh-HhhhhHHHHHHHHHHhCCcCCCcEEEEEecCCC
Confidence            23457999987655 666777888888876  5899999888765543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.40  E-value=6.6e-12  Score=96.58  Aligned_cols=104  Identities=15%  Similarity=0.059  Sum_probs=80.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +..|||||||+|...+.+|+..  ..++|+|+ ..++..+.+++..+++             .++.+...|...... ..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-------------~Nv~~~~~Da~~l~~-~~   95 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-------------QNVKLLNIDADTLTD-VF   95 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-------------SSEEEECCCGGGHHH-HC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-------------cCchhcccchhhhhc-cc
Confidence            3479999999999999999885  47999998 6699999999988774             488888866543221 23


Q ss_pred             cCCCccEEEEeccccCccC--------HHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEHL--------LEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~--------~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+..+|.|+..-+..+...        ...+++.++++|||||.++++.
T Consensus        96 ~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          96 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5678998876655444322        2579999999999999998875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-12  Score=100.98  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-  139 (222)
                      +..++||||||+|.+++.+++.  +.+|+++|+ +++++.|++|++.|++.            .++.+...+|...... 
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~------------~~~~~~~~~~~~~~~~~  128 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS------------DLIKVVKVPQKTLLMDA  128 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT------------TTEEEEECCTTCSSTTT
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC------------cceeeeeeccHHhhhhh
Confidence            4468999999999999998875  679999999 66999999999999864            5788887776543211 


Q ss_pred             --cccCCCccEEEEeccccC
Q 027530          140 --KAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       140 --~~~~~~fD~Ii~~d~~y~  157 (222)
                        ....++||+|++|+++|.
T Consensus       129 ~~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         129 LKEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             STTCCSCCBSEEEECCCCC-
T ss_pred             hhhcccCceeEEEecCcccc
Confidence              123568999999999985

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.39  E-value=3.1e-13  Score=104.91  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=77.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ...+|.+|||||||+|..+..+|++ |.+|+++|. +++++.+++|++..+.             .++.+...|..   .
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-------------~nv~~~~gd~~---~  138 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-------------KNVHVILGDGS---K  138 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEESCGG---G
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-------------ceeEEEECccc---c
Confidence            4667899999999999999999976 778999998 6799999999998774             48888885543   3


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ......+||.|+....+..  ....    +.+.|+|||++++..
T Consensus       139 g~~~~~pfD~Iiv~~a~~~--ip~~----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         139 GFPPKAPYDVIIVTAGAPK--IPEP----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CCGGGCCEEEEEECSBBSS--CCHH----HHHTEEEEEEEEEEE
T ss_pred             CCcccCcceeEEeeccccc--CCHH----HHHhcCCCCEEEEEE
Confidence            2334678999998877743  3333    456789999987643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=7.7e-11  Score=90.50  Aligned_cols=104  Identities=18%  Similarity=0.046  Sum_probs=81.0

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +..|||||||+|-..+.+|+..  ..++|+|+ ..++..+.+++..+++             .++.+...|..+... ..
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-------------~Ni~~~~~da~~l~~-~~   97 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-------------PNIKLLWVDGSDLTD-YF   97 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-------------SSEEEEECCSSCGGG-TS
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-------------ccceeeecCHHHHhh-hc
Confidence            3479999999999999999885  46999998 5699999998888774             489999977665432 23


Q ss_pred             cCCCccEEEEeccccCcc--------CHHHHHHHHHHhcCCCeEEEEEE
Q 027530          142 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~--------~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+.++|.|+..-+--+..        ....+++.+.++|+|||.+++++
T Consensus        98 ~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          98 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            467899987664433322        13679999999999999998865

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.9e-11  Score=99.08  Aligned_cols=162  Identities=12%  Similarity=0.087  Sum_probs=111.4

Q ss_pred             EEEeeCCCCccccccccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHH
Q 027530           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLL  101 (222)
Q Consensus        23 ~~i~q~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~  101 (222)
                      +++...|+++.-.  .-..+..|.+++.+..       ...++.+||||.||+|.+|+.+|+.+.+|+++|. +++++.|
T Consensus       180 ~~~~i~p~sFfQ~--N~~~~e~l~~~v~~~~-------~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A  250 (358)
T d1uwva2         180 LRLTFSPRDFIQV--NAGVNQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKG  250 (358)
T ss_dssp             EEEECCSSSCCCS--BHHHHHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHH
T ss_pred             EEEEECCchhhcc--chhhhhHHHHHHHHhh-------ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHH
Confidence            3444445443222  2234566666666542       3446789999999999999999999999999998 6799999


Q ss_pred             HHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          102 KRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       102 ~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      ++|++.|++             .++.+...+..+... ......+||+||..++-  ... ...++.+.+. +|.-++|+
T Consensus       251 ~~na~~n~i-------------~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR--~G~-~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         251 QQNARLNGL-------------QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPAR--AGA-AGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             HHHHHHTTC-------------CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCT--TCC-HHHHHHHHHH-CCSEEEEE
T ss_pred             HHhHHhccc-------------ccceeeecchhhhhhhhhhhhccCceEEeCCCC--ccH-HHHHHHHHHc-CCCEEEEE
Confidence            999999986             478888866554322 22235679999988886  333 3567777664 78889999


Q ss_pred             EEEEcChhHHHHHHHHHhcCCeEEEecCCCCC
Q 027530          181 GYEIRSTSVHEQMLQMWKSNFNVKLVPKAKES  212 (222)
Q Consensus       181 ~~~~r~~~~~~~f~~~~~~~~~v~~v~~~~~~  212 (222)
                      +..+...  ........+.+|+++.+.--++-
T Consensus       314 SCnp~Tl--aRDl~~l~~~gy~l~~i~~~D~F  343 (358)
T d1uwva2         314 SCNPATL--ARDSEALLKAGYTIARLAMLDMF  343 (358)
T ss_dssp             ESCHHHH--HHHHHHHHHTTCEEEEEEEECCS
T ss_pred             eCCHHHH--HHHHHHHHHCCCeEeEEEEEecC
Confidence            8865332  23333444678988766544333

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-11  Score=99.59  Aligned_cols=115  Identities=15%  Similarity=0.110  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+|||+|||+|.+++.+|+. |  .+|+++|+ +++++.|++|++..+........  .....++.+...|..+.
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~--~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV--EEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCS--SCCCCCEEEEESCTTCC
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhh--hccccceeEEecchhhc
Confidence            4568999999999999999999976 4  47999999 67999999999876533211100  12346788888776543


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .. ......||.|+. |+    ......+..+.++|||||++++..+
T Consensus       173 ~~-~~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         173 TE-DIKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             C--------EEEEEE-CS----SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             cc-ccCCCCcceEee-cC----cCHHHHHHHHHHhccCCCEEEEEeC
Confidence            22 123567999986 33    2334578899999999999876443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.6e-11  Score=95.70  Aligned_cols=105  Identities=14%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh----C----CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEe
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL----G----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVEL  131 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~----g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~  131 (222)
                      ...+|.+|||+|||+|..+..++++    |    .+|+++|. +++++.+++|+..+.....        ...++.+...
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~--------~~~nv~~~~~  148 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML--------DSGQLLIVEG  148 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH--------HHTSEEEEES
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc--------CccEEEEEec
Confidence            3557899999999999999888876    2    37999998 6799999999876543210        1247788874


Q ss_pred             ecCCCccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          132 DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       132 d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      |-   ........+||.|+....+..  ..    ..+.+.|+|||++++..
T Consensus       149 d~---~~~~~~~~~fD~Iiv~~a~~~--~p----~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         149 DG---RKGYPPNAPYNAIHVGAAAPD--TP----TELINQLASGGRLIVPV  190 (223)
T ss_dssp             CG---GGCCGGGCSEEEEEECSCBSS--CC----HHHHHTEEEEEEEEEEE
T ss_pred             cc---ccccccccceeeEEEEeechh--ch----HHHHHhcCCCcEEEEEE
Confidence            43   332334568999998877633  22    34567899999987644

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3e-11  Score=99.43  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=78.9

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...++.+|||||||+|.+.+.+|+. ++ +++|+|+ +++++.++++.+..........    ....++++.+.|..+. 
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g----~~~~~i~~~~gd~~~~-  222 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG----KKHAEYTLERGDFLSE-  222 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT----CCCCCEEEEECCTTSH-
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc----ccCCceEEEECccccc-
Confidence            3557889999999999999988865 44 6999999 6699999888765432111000    1235788888665432 


Q ss_pred             cccccCC--CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          138 HIKAVAP--PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       138 ~~~~~~~--~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                        +..+.  ..|+|+++... +.......+..+.+.|||||+++..
T Consensus       223 --~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         223 --EWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             --HHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             --ccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEEEe
Confidence              22122  35788876554 4566677888899999999998764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=9e-11  Score=98.65  Aligned_cols=116  Identities=17%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEE-EEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQA-VELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~-~~~d~~~~  136 (222)
                      ...+|.+|||||||+|.+.+.+|.. |. +|+|+|+ +.+++.|+++++..+........    ....+.. ...+..+.
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~----~~~~~~~~~~~~f~~~  288 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM----RLNNVEFSLKKSFVDN  288 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB----CCCCEEEEESSCSTTC
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcc----ccccceeeeeechhhc
Confidence            4568899999999999999988865 54 7999999 66999999998765532111000    0112222 11111111


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +.....-..+|+|+.+.. .+.......++.+.+.|||||+++..
T Consensus       289 ~~~d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         289 NRVAELIPQCDVILVNNF-LFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccccceEEEEecc-cCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            111111245788887654 44666788899999999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.6e-09  Score=83.85  Aligned_cols=130  Identities=13%  Similarity=0.111  Sum_probs=92.6

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +-++|||||||+|..++.+|..   +.+|+.+|. ++..+.+++|++..+..            .++++..++..+... 
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~------------~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE------------HKIDLRLKPALETLDE  126 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT------------TTEEEEESCHHHHHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc------------ceEEEEEeehhhcchh
Confidence            4579999999999999999864   568999998 67999999999998753            578888755432211 


Q ss_pred             c--cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcCh------------hHHHHHHHHHhc--CCe
Q 027530          139 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFN  202 (222)
Q Consensus       139 ~--~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~------------~~~~~f~~~~~~--~~~  202 (222)
                      .  .....+||+|+..   ...+.....+..+.++|+|||.+++-......            ....+|.+.+++  .|.
T Consensus       127 ~~~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~  203 (219)
T d2avda1         127 LLAAGEAGTFDVAVVD---ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVY  203 (219)
T ss_dssp             HHHTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEE
T ss_pred             hhhhcccCCccEEEEe---CCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence            1  1125689999975   23566778888999999999998775432211            124567676654  566


Q ss_pred             EEEecC
Q 027530          203 VKLVPK  208 (222)
Q Consensus       203 v~~v~~  208 (222)
                      ...+|-
T Consensus       204 ~~llPi  209 (219)
T d2avda1         204 ISLLPL  209 (219)
T ss_dssp             EEEECS
T ss_pred             EEEeec
Confidence            665553

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=9.4e-10  Score=84.91  Aligned_cols=118  Identities=19%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      +-++|||+|||+|..++.+|+.   +.+|+++|. +++.+.+++|++..++.            .+|++..++..+... 
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~------------~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ------------DKVTILNGASQDLIPQ  123 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG------------GGEEEEESCHHHHGGG
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC------------ccceeeeccccccccc
Confidence            4479999999999999999864   578999999 67999999999988753            578888866543211 


Q ss_pred             c--cccCCCccEEEEeccccCccCHHH--HHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          139 I--KAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       139 ~--~~~~~~fD~Ii~~d~~y~~~~~~~--ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      +  .....+||+|+..   .+.+....  .+....++|+|||.+++-...+...  ..+++.++
T Consensus       124 l~~~~~~~~~D~ifiD---~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~--~~~~~~vr  182 (214)
T d2cl5a1         124 LKKKYDVDTLDMVFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT--PDFLAYVR  182 (214)
T ss_dssp             HHHHSCCCCEEEEEEC---SCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCC--HHHHHHHH
T ss_pred             hhhcccccccceeeec---ccccccccHHHHHHHhCccCCCcEEEEeCcCCCCC--hHHHHHHh
Confidence            1  1124679999864   22333222  3445557799999765533333322  34555443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.93  E-value=4.8e-09  Score=81.45  Aligned_cols=103  Identities=15%  Similarity=0.062  Sum_probs=79.8

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc-
Q 027530           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH-  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  138 (222)
                      .-++|||+|+++|.-++.+|+.   +++|+.+|. ++..+.+++|+++.+..            .++++...+..+... 
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~------------~~i~~~~g~a~~~L~~  126 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD------------HKIDFREGPALPVLDE  126 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG------------GGEEEEESCHHHHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc------------cceeeeehHHHHHHHH
Confidence            4479999999999999999864   568999998 67999999999998853            578888855543211 


Q ss_pred             c---cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          139 I---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       139 ~---~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +   ....++||+|+.. .  +.......++.+.++|+|||.+++-
T Consensus       127 l~~~~~~~~~fD~iFiD-a--~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         127 MIKDEKNHGSYDFIFVD-A--DKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHHCGGGTTCBSEEEEC-S--CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HHhccccCCceeEEEec-c--chhhhHHHHHHHHhhcCCCcEEEEc
Confidence            1   1124689999974 2  3566788999999999999987764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5e-09  Score=80.14  Aligned_cols=118  Identities=18%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+++|+|+|||.|++|+.+|....  +|+++|. ..-+..++.-+..-++             .++++.+....+..   
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-------------~nv~v~~~R~E~~~---  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-------------ENIEPVQSRVEEFP---  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------------SSEEEEECCTTTSC---
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-------------cceeeeccchhhhc---
Confidence            457999999999999999998754  7999997 5566666665555443             37888875554432   


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCCeEEEe
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  206 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~~v~~v  206 (222)
                       ...+||+|++--+    .....++..+..+++++|.+++--....   .++ .+.++.++.++.+
T Consensus       129 -~~~~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~KG~~~---~eE-l~~~~~~~~~~~~  185 (207)
T d1jsxa_         129 -SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMP---EDE-IALLPEEYQVESV  185 (207)
T ss_dssp             -CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCC---HHH-HHTSCTTEEEEEE
T ss_pred             -cccccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEECCCCH---HHH-HHhhhcCCEEEEE
Confidence             2468999987544    4678899999999999999766433222   122 2334456655433

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=6.8e-09  Score=81.53  Aligned_cols=95  Identities=18%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC--EEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ..+|||||||+|..++.+++...  +++..|++++++.       ..            ...++++..+|.-+.      
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~------------~~~ri~~~~gd~~~~------  136 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-------AP------------PLSGIEHVGGDMFAS------  136 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CC------------CCTTEEEEECCTTTC------
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhc-------cC------------CCCCeEEecCCcccc------
Confidence            47899999999999999998854  7999999876431       11            235889998776432      


Q ss_pred             CCCccEEEEeccccCccC--HHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .+..|+++...++|+.++  ...+++.+.+.|+|||+++|....
T Consensus       137 ~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         137 VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            235699999999988654  556899999999999999998764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=1.2e-08  Score=83.42  Aligned_cols=126  Identities=12%  Similarity=0.037  Sum_probs=83.7

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh----C---CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL----G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~----g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      .++.+|||.|||+|...+.+...    +   .+++|+|+ +.++..|+.|+..++.              .......++-
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--------------~~~~~~~d~~  181 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--------------KMTLLHQDGL  181 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--------------CCEEEESCTT
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--------------hhhhhccccc
Confidence            35578999999999888777642    2   25999999 5699999999887763              3344443332


Q ss_pred             CCccccccCCCccEEEEeccccCcc------------------CHHHHHHHHHHhcCCCeEEEEEEEEcC--hhHHHHHH
Q 027530          135 NEDHIKAVAPPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQML  194 (222)
Q Consensus       135 ~~~~~~~~~~~fD~Ii~~d~~y~~~------------------~~~~ll~~~~~~l~~~g~~~l~~~~r~--~~~~~~f~  194 (222)
                      ..    ....+||+||+++|+-...                  ....++..+.++|+|+|++.+..+..-  ......+.
T Consensus       182 ~~----~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR  257 (328)
T d2f8la1         182 AN----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVD  257 (328)
T ss_dssp             SC----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHH
T ss_pred             cc----cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHH
Confidence            21    2356899999999973211                  133478888999999999888776421  11234555


Q ss_pred             HHHhcCCeEEEe
Q 027530          195 QMWKSNFNVKLV  206 (222)
Q Consensus       195 ~~~~~~~~v~~v  206 (222)
                      +.+.+.+.++.+
T Consensus       258 ~~L~~~~~i~~i  269 (328)
T d2f8la1         258 KFIKKNGHIEGI  269 (328)
T ss_dssp             HHHHHHEEEEEE
T ss_pred             HHHHhCCcEEEE
Confidence            555444444433

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=1.6e-08  Score=78.77  Aligned_cols=125  Identities=12%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .+.+++|+|+|.|++|+.+|-.  ..+|+.+|. ..=+..++.-+..-++             .++.+......+.....
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-------------~n~~i~~~R~E~~~~~~  136 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-------------ENTTFCHDRAETFGQRK  136 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-------------SSEEEEESCHHHHTTCT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-------------CCcEEEeehhhhccccc
Confidence            4578999999999999999976  447999997 4445555554444443             35666653332221112


Q ss_pred             ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHh-cCCeEEE
Q 027530          141 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  205 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~-~~~~v~~  205 (222)
                      ...++||+|++--+    .....++..+..+++++|.+++.-......-.+...+.+. .++.+..
T Consensus       137 ~~~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~  198 (239)
T d1xdza_         137 DVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELEN  198 (239)
T ss_dssp             TTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred             cccccceEEEEhhh----hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEE
Confidence            23568999998644    4688899999999999998766443333322333333343 3454443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.65  E-value=3.5e-08  Score=77.37  Aligned_cols=93  Identities=13%  Similarity=0.044  Sum_probs=72.4

Q ss_pred             CeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      ++|||+|||+|..++.+++..  .+++..|.+++++.+.                   ...++++..+|.-+.      .
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-------------------~~~rv~~~~gD~f~~------~  136 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS-------------------GSNNLTYVGGDMFTS------I  136 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-------------------CBTTEEEEECCTTTC------C
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc-------------------ccCceEEEecCcccC------C
Confidence            689999999999999999884  5799999987654321                   135899998665432      2


Q ss_pred             CCccEEEEeccccCccC--HHHHHHHHHHhcCCC---eEEEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPK---TTILLGYE  183 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~--~~~ll~~~~~~l~~~---g~~~l~~~  183 (222)
                      ..+|+++...++++..+  ...+++.+++.|+||   |++++...
T Consensus       137 p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         137 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            46899999999988655  356899999999998   77877654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=4.8e-08  Score=73.74  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|..+||++||+|-.+..+++.  +.+|+++|. ++|++.+++++...+              .++.+.+.+..+...
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--------------~r~~~~~~~f~~~~~   86 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--------------DRVSLFKVSYREADF   86 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--------------TTEEEEECCGGGHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--------------ccccchhHHHhhHHH
Confidence            457789999999999888877765  568999999 679999999887543              467888855543321


Q ss_pred             c--cccCCCccEEEEeccc---------cCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 I--KAVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~--~~~~~~fD~Ii~~d~~---------y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .  ....++||.|+..--+         -........+....++|+|||++.+..
T Consensus        87 ~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          87 LLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            1  1224689998754111         012335667888888999999987654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.62  E-value=1e-07  Score=74.25  Aligned_cols=78  Identities=12%  Similarity=-0.003  Sum_probs=57.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|||+|.++..+++.+++|+++|+ +.+++.++++...               ..++++...|.-+.+  
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~---------------~~n~~i~~~D~l~~~--   80 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD---------------HDNFQVLNKDILQFK--   80 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT---------------CCSEEEECCCGGGCC--
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc---------------ccchhhhhhhhhhcc--
Confidence            3457899999999999999999999999999999 4588887775542               347888886654432  


Q ss_pred             cccCCCccEEEEecccc
Q 027530          140 KAVAPPFDYIIGTDVVY  156 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y  156 (222)
                       ........|++|-+++
T Consensus        81 -~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          81 -FPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             -CCSSCCCEEEEECCGG
T ss_pred             -ccccccceeeeeehhh
Confidence             2223345677776653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=1.3e-07  Score=76.57  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=83.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH-hhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ..++||.||.|.|.....+++..  .+|+++|+ +++++.+++.+.. +...         -...++++...|+...  +
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~---------~~d~rv~i~~~Da~~~--l  145 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA---------FDDPRAVLVIDDARAY--L  145 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG---------GGCTTEEEEESCHHHH--H
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc---------cCCCceEEEEchHHHH--h
Confidence            34799999999998888777653  47999999 6799999988743 2211         1235788888666543  2


Q ss_pred             cccCCCccEEEEe--ccccCcc-----CHHHHHHHHHHhcCCCeEEEEEEEE---cChhHHHHHHHHHhcCC
Q 027530          140 KAVAPPFDYIIGT--DVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI---RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       140 ~~~~~~fD~Ii~~--d~~y~~~-----~~~~ll~~~~~~l~~~g~~~l~~~~---r~~~~~~~f~~~~~~~~  201 (222)
                      ...+.+||+|+..  |+.....     .-..+++.+++.|+|+|++++-...   ..........+.+++.|
T Consensus       146 ~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F  217 (312)
T d1uira_         146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAF  217 (312)
T ss_dssp             HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTC
T ss_pred             hhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhC
Confidence            2346789999953  3332211     1256899999999999988764322   22233344445566655

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.58  E-value=1.1e-07  Score=74.29  Aligned_cols=94  Identities=14%  Similarity=0.050  Sum_probs=70.6

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      .++|||||||+|..++.+++..  .+++..|++++++.++                   ...++.+...|+.+.  .   
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-------------------~~~r~~~~~~d~~~~--~---  137 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP-------------------SYPGVEHVGGDMFVS--I---  137 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC-------------------CCTTEEEEECCTTTC--C---
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc-------------------cCCceEEeccccccc--C---
Confidence            4689999999999999999884  4799999988653211                   135788888776432  1   


Q ss_pred             CCCccEEEEeccccCcc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          143 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       +..|+++...++++..  ....+++.+.+.|+|+|++++...
T Consensus       138 -P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         138 -PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             -CCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             -CCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence             2356677777777654  356689999999999999988764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=1.5e-07  Score=78.02  Aligned_cols=114  Identities=18%  Similarity=0.117  Sum_probs=77.2

Q ss_pred             CCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCC--CCCCCceEEEEeecCCCcc
Q 027530           64 KGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS--GNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~--~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++++|||..||+|+-|+..|. .|+ +|++.|+ +++++.+++|++.|+..........  ......+.+...|+...  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~--  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL--  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--
Confidence            567999999999999996665 565 6999999 6699999999999985311100000  00112344454333211  


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .......||+|... + |  ....++++...+.++.+|.+.++..
T Consensus       123 ~~~~~~~fDvIDiD-P-f--Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         123 MAERHRYFHFIDLD-P-F--GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHSTTCEEEEEEC-C-S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hHhhcCcCCcccCC-C-C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence            11235679998865 4 2  3456799999999999999988763

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-06  Score=69.69  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      ...++.+|||+|+|+|.++..+++.+++|++++. +.+++.+++.+..+..            ..++++...|+-..+  
T Consensus        18 ~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~------------~~~~~~i~~D~l~~~--   83 (278)
T d1zq9a1          18 ALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV------------ASKLQVLVGDVLKTD--   83 (278)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT------------GGGEEEEESCTTTSC--
T ss_pred             CCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhcc------------ccchhhhHHHHhhhh--
Confidence            3446789999999999999999999999999999 4588888887764431            357888987776543  


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHH
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA  170 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~  170 (222)
                         ...++.||+|-++|-   -.+++..+..
T Consensus        84 ---~~~~~~vV~NLPY~I---ss~il~~~~~  108 (278)
T d1zq9a1          84 ---LPFFDTCVANLPYQI---SSPFVFKLLL  108 (278)
T ss_dssp             ---CCCCSEEEEECCGGG---HHHHHHHHHH
T ss_pred             ---hhhhhhhhcchHHHH---HHHHHHHHHh
Confidence               235678999877643   3344444433

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.42  E-value=1.9e-08  Score=78.84  Aligned_cols=78  Identities=14%  Similarity=0.070  Sum_probs=57.8

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++.+|||||||+|.++..+++.+.+|+++|++ ++++.++++...               ..++++...|..+.+   
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~---------------~~n~~ii~~D~l~~~---   88 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---------------NTRVTLIHQDILQFQ---   88 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---------------CSEEEECCSCCTTTT---
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh---------------ccchhhhhhhhhccc---
Confidence            4467899999999999999999999999999994 477776654431               247888886665443   


Q ss_pred             ccCCCccEEEEeccccC
Q 027530          141 AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~  157 (222)
                      .....++.|+++-++|-
T Consensus        89 ~~~~~~~~vv~NLPY~I  105 (245)
T d1yuba_          89 FPNKQRYKIVGNIPYHL  105 (245)
T ss_dssp             CCCSSEEEEEEECCSSS
T ss_pred             cccceeeeEeeeeehhh
Confidence            23456777888877543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.39  E-value=7e-07  Score=67.22  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             CCeEEEeCCCccHH----HHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhcc-----------ccccCCC-C--
Q 027530           65 GKRVIELGAGCGVA----GFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSR-----------ISQMNPG-S--  119 (222)
Q Consensus        65 ~~~vLelGcG~G~~----~i~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~-----------~~~~~~~-~--  119 (222)
                      ..+|++.|||+|--    ++.+...    +  .+|++||+ +.+++.|++..-.....           ....... .  
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            35899999999963    3333322    1  26999999 55888887543211100           0000000 0  


Q ss_pred             ----CCCCCceEEEEeecCCCccccccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          120 ----GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       120 ----~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                          ......+.+...+....  .....++||+|++..++..  .+....+++.+++.|+|||.+++..
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~--~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             eehHHHHHHHHHHhhhhcccc--ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence                00011233333222211  1223578999999988854  3445779999999999999988864

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.36  E-value=6.3e-07  Score=71.24  Aligned_cols=131  Identities=17%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +.++||-||+|.|.....+.+... +|+++|+ +++++.+++-...+.........   ...+++++...|....-   .
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~---~~d~rv~i~~~Da~~~l---~  145 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN---GKHEKAKLTIGDGFEFI---K  145 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHT---TCCSSEEEEESCHHHHH---H
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhc---cCCCCceEEEChHHHHH---h
Confidence            447999999999988887776654 6999999 67999998755432211000000   12457888875543221   1


Q ss_pred             cCCCccEEEEeccccCccC-----HHHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCC
Q 027530          142 VAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  201 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~  201 (222)
                      ..++||+||. |+......     -..+++.+++.|+|+|++++-....  .........+.+++.|
T Consensus       146 ~~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F  211 (276)
T d1mjfa_         146 NNRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVF  211 (276)
T ss_dssp             HCCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHC
T ss_pred             ccCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhC
Confidence            2578999995 33322111     2468999999999999876644332  2223344445555444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.28  E-value=8.1e-07  Score=67.68  Aligned_cols=108  Identities=16%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             HHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecchh-hHHHHHHHHHHhhccccccCCCC
Q 027530           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGS  119 (222)
Q Consensus        44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~  119 (222)
                      -+++++....       ...++.+|||.|||+|.....+...   ..+++++|+.+ ++..++                 
T Consensus         6 ~i~~~m~~l~-------~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-----------------   61 (223)
T d2ih2a1           6 EVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-----------------   61 (223)
T ss_dssp             HHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-----------------
T ss_pred             HHHHHHHHhc-------CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-----------------
Confidence            4566665542       3446789999999999876666543   34699999844 432221                 


Q ss_pred             CCCCCceEEEEeecCCCccccccCCCccEEEEeccccCcc-----------------------------CHHHHHHHHHH
Q 027530          120 GNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFA  170 (222)
Q Consensus       120 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~-----------------------------~~~~ll~~~~~  170 (222)
                           ...+...++....    ...+||+|++++++-...                             ....++....+
T Consensus        62 -----~~~~~~~~~~~~~----~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~  132 (223)
T d2ih2a1          62 -----WAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR  132 (223)
T ss_dssp             -----TEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHH
T ss_pred             -----cceeeeeehhccc----cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHH
Confidence                 2234443333221    246899999998863210                             12345677778


Q ss_pred             hcCCCeEEEEEEEE
Q 027530          171 LSGPKTTILLGYEI  184 (222)
Q Consensus       171 ~l~~~g~~~l~~~~  184 (222)
                      +|+++|++.+..+.
T Consensus       133 ~lk~~G~~~~I~p~  146 (223)
T d2ih2a1         133 LLKPGGVLVFVVPA  146 (223)
T ss_dssp             HEEEEEEEEEEEEG
T ss_pred             hcccCCceEEEEee
Confidence            89999998877764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.21  E-value=4.6e-06  Score=70.03  Aligned_cols=128  Identities=13%  Similarity=0.029  Sum_probs=84.4

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      ..+.+|+|-.||+|..-+.+.+.               ...+.+.|+ +.+...++.|+..++..           ....
T Consensus       161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~-----------~~~~  229 (425)
T d2okca1         161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG-----------TDRS  229 (425)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC-----------SSCC
T ss_pred             cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc-----------cccc
Confidence            35679999999999877776653               124899999 66999999999887743           1233


Q ss_pred             EEEEeecCCCccccccCCCccEEEEeccccCc-----------------cCHHHHHHHHHHhcCCCeEEEEEEEEcC---
Q 027530          127 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----------------HLLEPLLQTIFALSGPKTTILLGYEIRS---  186 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~-----------------~~~~~ll~~~~~~l~~~g~~~l~~~~r~---  186 (222)
                      .....|.-+.    ....+||+||+++|+-..                 .....++..+.++|++||++.+..+...   
T Consensus       230 ~i~~~d~l~~----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~  305 (425)
T d2okca1         230 PIVCEDSLEK----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFE  305 (425)
T ss_dssp             SEEECCTTTS----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHC
T ss_pred             eeecCchhhh----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhh
Confidence            3444333221    235689999999998221                 0123488888999999999888777421   


Q ss_pred             hhHHHHHHHHHhcCCeEEE
Q 027530          187 TSVHEQMLQMWKSNFNVKL  205 (222)
Q Consensus       187 ~~~~~~f~~~~~~~~~v~~  205 (222)
                      ......+.+.+-+.+.++.
T Consensus       306 ~~~~~~iR~~Ll~~~~i~a  324 (425)
T d2okca1         306 AGAGETIRKRLLQDFNLHT  324 (425)
T ss_dssp             STHHHHHHHHHHHHEEEEE
T ss_pred             hhhHHHHHHHHHHhcchhH
Confidence            2223455666544444433

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=2.5e-06  Score=68.24  Aligned_cols=126  Identities=14%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      -++||-||.|.|...-.+++..  .+|+++|+ +++++.+++-+..+....         ...++++...|....  +..
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~---------~d~rv~v~~~Da~~~--l~~  158 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF---------DDPRAEIVIANGAEY--VRK  158 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG---------GCTTEEEEESCHHHH--GGG
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc---------cCCCcEEEhhhHHHH--Hhc
Confidence            4799999999998887777753  47999999 679999998776554221         235788887555432  233


Q ss_pred             cCCCccEEEEe--ccccCc--c-CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCC
Q 027530          142 VAPPFDYIIGT--DVVYAE--H-LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       142 ~~~~fD~Ii~~--d~~y~~--~-~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~  201 (222)
                      ...+||+||..  ++....  . .-..+++.+++.|+|+|++.+-...  ..........+.++..|
T Consensus       159 ~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF  225 (295)
T d1inla_         159 FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF  225 (295)
T ss_dssp             CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhc
Confidence            46789999963  111111  1 1357999999999999987654322  12223344445555445

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=7.3e-06  Score=64.81  Aligned_cols=128  Identities=12%  Similarity=-0.012  Sum_probs=85.1

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++||-||-|.|...-.+.+. + .+|+++|+ +++++.+++-...+...         -...++++...|....  +.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~---------~~d~r~~i~~~D~~~~--l~  143 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK---------LDDPRVDVQVDDGFMH--IA  143 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT---------TTSTTEEEEESCSHHH--HH
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc---------ccCCCeEEEechHHHH--Hh
Confidence            3479999999999999888875 3 47999999 67999999877655422         1245788877554322  22


Q ss_pred             ccCCCccEEEEec--cccCcc--CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~d--~~y~~~--~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~~  202 (222)
                      ....+||+|+..-  +.....  .-..+.+.+++.|+|+|++..-...  ..+.......+.+++.|.
T Consensus       144 ~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~  211 (274)
T d1iy9a_         144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFP  211 (274)
T ss_dssp             TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred             hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcC
Confidence            2357899999642  111111  1456899999999999987653321  223344556666666663

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.5e-06  Score=65.45  Aligned_cols=127  Identities=16%  Similarity=0.051  Sum_probs=82.0

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      .-++||-||-|.|...-.+.+.  ..+|+.+|+ +++++.+++-+..+....         ...++++...|....  +.
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~---------~d~rv~i~~~Da~~~--l~  146 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY---------SSSKLTLHVGDGFEF--MK  146 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG---------GCTTEEEEESCHHHH--HH
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc---------CCCCceEEEccHHHH--Hh
Confidence            3478999999999988888876  347999999 679999998776543221         235788887554322  22


Q ss_pred             ccCCCccEEEEeccccCccC-----HHHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCCe
Q 027530          141 AVAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  202 (222)
Q Consensus       141 ~~~~~fD~Ii~~d~~y~~~~-----~~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~~  202 (222)
                      ...++||+||.. +.-....     -..+++.+++.|+|+|++.+-....  .........+.++..|.
T Consensus       147 ~~~~~yDvIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~  214 (285)
T d2o07a1         147 QNQDAFDVIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP  214 (285)
T ss_dssp             TCSSCEEEEEEE-CC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCCEEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCC
Confidence            235789999964 3211111     2347999999999999877654332  22233444555555453

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=5.6e-05  Score=60.16  Aligned_cols=77  Identities=17%  Similarity=0.109  Sum_probs=56.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .+|.+|||++||.|-=++.+|.+   ..+|++.|. ..-+..+++|+++.+.             .++.+...|......
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-------------~~~~~~~~d~~~~~~  159 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-------------SCCELAEEDFLAVSP  159 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-------------CSEEEEECCGGGSCT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-------------cceeeeehhhhhhcc
Confidence            46889999999999877766654   457999998 5588999999998875             367777655443322


Q ss_pred             ccccCCCccEEEEe
Q 027530          139 IKAVAPPFDYIIGT  152 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~  152 (222)
                      ......+||.|+..
T Consensus       160 ~~~~~~~fD~VL~D  173 (293)
T d2b9ea1         160 SDPRYHEVHYILLD  173 (293)
T ss_dssp             TCGGGTTEEEEEEC
T ss_pred             cccccceeeEEeec
Confidence            22223679999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.07  E-value=9.2e-05  Score=59.41  Aligned_cols=118  Identities=17%  Similarity=0.090  Sum_probs=75.7

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+|||++||.|-=+..++.+   ...+++.|. +.-+..+++|+++.+..             ++.+..   .+..
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-------------~i~~~~---~d~~  177 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-------------NVILFH---SSSL  177 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-------------SEEEES---SCGG
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-------------cccccc---cccc
Confidence            347889999999999877766654   346999998 56888899999887742             444443   3333


Q ss_pred             cccccCCCccEEEEecc-cc-----Cc----------------cCHHHHHHHHHHhcCCCeEEEEEE-E---EcChhHHH
Q 027530          138 HIKAVAPPFDYIIGTDV-VY-----AE----------------HLLEPLLQTIFALSGPKTTILLGY-E---IRSTSVHE  191 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~-~y-----~~----------------~~~~~ll~~~~~~l~~~g~~~l~~-~---~r~~~~~~  191 (222)
                      ........||.|+.-.+ --     ..                .....++....++++|||.++.++ .   .-+..+..
T Consensus       178 ~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~  257 (313)
T d1ixka_         178 HIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQ  257 (313)
T ss_dssp             GGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHH
T ss_pred             ccccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHH
Confidence            33344678999987322 11     00                113346777777889999765543 2   23334555


Q ss_pred             HHHH
Q 027530          192 QMLQ  195 (222)
Q Consensus       192 ~f~~  195 (222)
                      .|++
T Consensus       258 ~~L~  261 (313)
T d1ixka_         258 WALD  261 (313)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.6e-06  Score=67.93  Aligned_cols=81  Identities=10%  Similarity=-0.042  Sum_probs=56.0

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..++..|||+|||+|.++..+++.+.+|+++|++ .+++.+++....               ..+++++..|.-+.+...
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~---------------~~~~~ii~~D~l~~~~~~   83 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL---------------GPKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT---------------GGGEEEECSCGGGCCHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh---------------ccchhHHhhhhhhhcccc
Confidence            3467899999999999999999999999999994 578887764332               247888886655432211


Q ss_pred             c--cCCCccEEEEeccccC
Q 027530          141 A--VAPPFDYIIGTDVVYA  157 (222)
Q Consensus       141 ~--~~~~fD~Ii~~d~~y~  157 (222)
                      .  .....-.|++|-+++-
T Consensus        84 ~~~~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          84 LAEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHTSCEEEEEECCTTT
T ss_pred             cccccCCCeEEEecchHHH
Confidence            1  1122336778766643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.99  E-value=6e-06  Score=66.37  Aligned_cols=125  Identities=14%  Similarity=0.021  Sum_probs=78.6

Q ss_pred             CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      -++||-||-|.|...-.+.+..  .+|+++|+ +++++.+++-+..+....         ..+++++...|....  +..
T Consensus       107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~---------~dprv~i~i~Da~~~--l~~  175 (312)
T d2b2ca1         107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF---------SHPKLDLFCGDGFEF--LKN  175 (312)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG---------GCTTEEEECSCHHHH--HHH
T ss_pred             CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc---------CCCCeEEEEchHHHH--HHh
Confidence            4689999999999888888764  47999999 679999998765433211         235777776443322  223


Q ss_pred             cCCCccEEEEeccccC---cc--CHHHHHHHHHHhcCCCeEEEEEEEE--cChhHHHHHHHHHhcCC
Q 027530          142 VAPPFDYIIGTDVVYA---EH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~---~~--~~~~ll~~~~~~l~~~g~~~l~~~~--r~~~~~~~f~~~~~~~~  201 (222)
                      ...+||+||.. +.-.   ..  .-..+++.+++.|+|+|+++.-...  -.........+.++..|
T Consensus       176 ~~~~yDvII~D-~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  241 (312)
T d2b2ca1         176 HKNEFDVIITD-SSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIF  241 (312)
T ss_dssp             CTTCEEEEEEC-CC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEc-CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhcc
Confidence            46789999963 3211   11  1345899999999999987664322  11223344455555544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.00012  Score=53.92  Aligned_cols=130  Identities=15%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecchhhHHHHHHHHHHhhccccccCC
Q 027530           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNP  117 (222)
Q Consensus        41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~  117 (222)
                      |+--|.+.....       ....++.+||||||+.|-.+.++++. +  .+|+++|...+-                   
T Consensus         6 aafKL~EI~~k~-------~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-------------------   59 (180)
T d1ej0a_           6 AWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-------------------   59 (180)
T ss_dssp             HHHHHHHHHHHH-------CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-------------------
T ss_pred             HHHHHHHHHHHh-------CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-------------------
Confidence            344555544433       22346789999999999999988864 3  369999963320                   


Q ss_pred             CCCCCCCceEEEEeecCCCccc-----cccCCCccEEEEeccccCcc-----------CHHHHHHHHHHhcCCCeEEEEE
Q 027530          118 GSGNLLGSIQAVELDWGNEDHI-----KAVAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       118 ~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~fD~Ii~~d~~y~~~-----------~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                          ....+.+.+.+..+....     .....++|+|++-...-...           .....+....++|++||.+++=
T Consensus        60 ----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          60 ----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             ----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----ccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence                123567777665543211     12356899999764432211           2334556667779999998775


Q ss_pred             EEEcChhHHHHHHHHHhcCCe
Q 027530          182 YEIRSTSVHEQMLQMWKSNFN  202 (222)
Q Consensus       182 ~~~r~~~~~~~f~~~~~~~~~  202 (222)
                      .- +... ...++..++..|.
T Consensus       136 ~F-~g~~-~~~l~~~l~~~F~  154 (180)
T d1ej0a_         136 VF-QGEG-FDEYLREIRSLFT  154 (180)
T ss_dssp             EE-SSTT-HHHHHHHHHHHEE
T ss_pred             Ee-cCcc-HHHHHHHHHhhcC
Confidence            53 3333 4677777777774

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=8.7e-05  Score=58.74  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=76.1

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+|.+|||++||.|-=++.++.++  ..|++.|. +.-+..+++|+++.+..             ++.+...+..  ...
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-------------~~~~~~~~~~--~~~  165 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-------------ATVKQGDGRY--PSQ  165 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-------------CEEEECCTTC--THH
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-------------ceeeeccccc--cch
Confidence            468899999999998777777665  46999998 55889999999988742             3333332211  111


Q ss_pred             cccCCCccEEEEec-c-----ccCcc----------------CHHHHHHHHHHhcCCCeEEEEEE----EEcChhHHHHH
Q 027530          140 KAVAPPFDYIIGTD-V-----VYAEH----------------LLEPLLQTIFALSGPKTTILLGY----EIRSTSVHEQM  193 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d-~-----~y~~~----------------~~~~ll~~~~~~l~~~g~~~l~~----~~r~~~~~~~f  193 (222)
                      ......||.|+.-. |     +-...                .-..++....++++|||+++.++    +.-+..+.+.|
T Consensus       166 ~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~  245 (284)
T d1sqga2         166 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAF  245 (284)
T ss_dssp             HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             hcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHH
Confidence            22356899998632 2     11111                13447777778899999776554    22333455666


Q ss_pred             HHH
Q 027530          194 LQM  196 (222)
Q Consensus       194 ~~~  196 (222)
                      ++.
T Consensus       246 l~~  248 (284)
T d1sqga2         246 LQR  248 (284)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=2.7e-05  Score=61.92  Aligned_cols=126  Identities=17%  Similarity=0.067  Sum_probs=80.8

Q ss_pred             CCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           65 GKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      -++||-||-|.|...-.+.+. . .+|+++|+ +++++.+++-...+....         ...++++...|....-. ..
T Consensus        81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~---------~~~r~~i~~~Da~~~l~-~~  150 (290)
T d1xj5a_          81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY---------EDPRVNLVIGDGVAFLK-NA  150 (290)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG---------GSTTEEEEESCHHHHHH-TS
T ss_pred             CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc---------cCCCcEEEEccHHHHHh-hc
Confidence            368999999999988888876 3 37999999 679999998765543221         23577877744332211 12


Q ss_pred             cCCCccEEEEeccccCcc----C-HHHHHHHHHHhcCCCeEEEEEEEEc--ChhHHHHHHHHHhcCC
Q 027530          142 VAPPFDYIIGTDVVYAEH----L-LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  201 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~----~-~~~ll~~~~~~l~~~g~~~l~~~~r--~~~~~~~f~~~~~~~~  201 (222)
                      .+++||+||. |+.-...    . -..+++.+++.|+|+|++.+-....  .........+.+++.|
T Consensus       151 ~~~~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         151 AEGSYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             CTTCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             cccCccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            2468999996 3331111    1 2558999999999999877644322  2233344445554433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=3.9e-05  Score=65.96  Aligned_cols=146  Identities=9%  Similarity=-0.103  Sum_probs=87.5

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--------------------CCEEEEecc-hhhHHH
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPL  100 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~--------------------g~~v~~~D~-~~~l~~  100 (222)
                      ...+++++..-+       ....+.+|+|-.||+|-.-+.+.+.                    ...+++.|. +.+...
T Consensus       149 P~~Iv~~mv~ll-------~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         149 PRPLIKTIIHLL-------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             CHHHHHHHHHHH-------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             ccchhHhhhhcc-------cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            345566665542       2345679999999999777665542                    124899998 669999


Q ss_pred             HHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeccccCcc--------------CHHHHH
Q 027530          101 LKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH--------------LLEPLL  165 (222)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~Ii~~d~~y~~~--------------~~~~ll  165 (222)
                      ++.|+...+.....        ...-....   ++.... .....+||+||+|+|+-...              .--.++
T Consensus       222 a~~nl~l~~~~~~i--------~~~~~~~~---~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi  290 (524)
T d2ar0a1         222 ALMNCLLHDIEGNL--------DHGGAIRL---GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFM  290 (524)
T ss_dssp             HHHHHHTTTCCCBG--------GGTBSEEE---SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHH
T ss_pred             HHHHHHhhcccccc--------cccchhhh---hhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHH
Confidence            99999877642100        00001111   211111 12346899999999983211              123488


Q ss_pred             HHHHHhcCCCeEEEEEEEEc---ChhHHHHHHHHHhcCCeEEE
Q 027530          166 QTIFALSGPKTTILLGYEIR---STSVHEQMLQMWKSNFNVKL  205 (222)
Q Consensus       166 ~~~~~~l~~~g~~~l~~~~r---~~~~~~~f~~~~~~~~~v~~  205 (222)
                      ..+.+.|++||++.+..+..   .......+.+.+-+.+.++.
T Consensus       291 ~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~a  333 (524)
T d2ar0a1         291 QHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT  333 (524)
T ss_dssp             HHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCceE
Confidence            88899999999998887642   12223445555544444433

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.59  E-value=0.00011  Score=56.28  Aligned_cols=100  Identities=14%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CCCeEEEeCCCccHHHHHHHHh------CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        64 ~~~~vLelGcG~G~~~i~la~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +-++|||+|++.|.-++.++..      .++|+++|+ ++.....     ..             ...++++.++|-.+.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~-------------~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS-------------DMENITLHQGDCSDL  141 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG-------------GCTTEEEEECCSSCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc-------------cccceeeeecccccH
Confidence            4579999999999766655532      357999998 3322110     01             135788888776554


Q ss_pred             ccccc-cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~~~-~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      ..... ....+|+|+--+. +.......-+ .+..+|++||.+++.+.
T Consensus       142 ~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         142 TTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            43322 2346888776443 3222211112 24578999999888654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=8.3e-05  Score=54.98  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ..+|..++|..+|.|--+..+...+.+|+++|. ++++..++..    .             ..++.+.+....+.....
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~----~-------------~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL----H-------------LPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT----C-------------CTTEEEEESCGGGHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc----c-------------ccceeEeehHHHHHHHHH
Confidence            457889999999999888888888889999998 6788777642    1             246777775555433221


Q ss_pred             --ccCCCccEEEEeccccCc----------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 --AVAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 --~~~~~fD~Ii~~d~~y~~----------~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                        ...+.+|.|+.. +-+..          +.....+.....+++++|++.+...
T Consensus        79 ~~~~~~~vdgIl~D-LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          79 AALGVERVDGILAD-LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HHTTCSCEEEEEEE-CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHcCCCccCEEEEE-ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence              124679998863 32221          1233467777888999998876553

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.44  E-value=0.00026  Score=54.71  Aligned_cols=101  Identities=20%  Similarity=0.292  Sum_probs=62.8

Q ss_pred             CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      .+|||+-||.|.-++.+|..|++|++++. +.+...++.++++........    .....++++...|-.+.  +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~----~~~~~ri~li~~Ds~~~--L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG----GWLQERLQLIHASSLTA--LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH----HHHHHHEEEEESCHHHH--STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhH----HHHhhhheeecCcHHHH--HhccCC
Confidence            48999999999999999999999999998 557777777776543210000    00123678877443221  222356


Q ss_pred             CccEEEEeccccCcc----CHHHHHHHHHHhcC
Q 027530          145 PFDYIIGTDVVYAEH----LLEPLLQTIFALSG  173 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~----~~~~ll~~~~~~l~  173 (222)
                      .||+|.. |++|...    ....-++.++.+..
T Consensus       164 ~~DvIYl-DPMFp~~~Ksa~~kk~m~~l~~l~~  195 (250)
T d2oyra1         164 RPQVVYL-DPMFPHKQKSALVKKEMRVFQSLVG  195 (250)
T ss_dssp             CCSEEEE-CCCCCCCCC-----HHHHHHHHHSC
T ss_pred             CCCEEEE-CCCCccccccccchhHHHHHHhhcc
Confidence            7999996 5555422    23344555555543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.15  E-value=0.00087  Score=51.42  Aligned_cols=115  Identities=15%  Similarity=0.072  Sum_probs=64.0

Q ss_pred             cccchHHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhh--HHHHHHHHHHhhcc
Q 027530           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEV--LPLLKRNVEWNTSR  111 (222)
Q Consensus        37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g--~~v~~~D~-~~~--l~~~~~n~~~n~~~  111 (222)
                      .+=.++..|.+.....        ...++.+|+|||||.|-.+..++.+.  ..|.++|+ -+.  .....   ..++  
T Consensus        47 ~~SR~~~Kl~~~~~~~--------~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~---~~~~--  113 (257)
T d2p41a1          47 AVSRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPM---STYG--  113 (257)
T ss_dssp             CSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCC---CSTT--
T ss_pred             CcchHHHHHHHHHHhc--------CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccc---cccc--
Confidence            3345667776554432        23455689999999999999999764  46777776 221  00000   0000  


Q ss_pred             ccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeccccCccC-------HHHHHHHHHHhcCCCeEEEE
Q 027530          112 ISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       112 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~~-------~~~ll~~~~~~l~~~g~~~l  180 (222)
                                 ...+++..   .. ........+.|+|+|- +--+...       .-.++..+.+.|+|||.+++
T Consensus       114 -----------~ni~~~~~---~~-dv~~l~~~~~D~vlcD-m~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         114 -----------WNLVRLQS---GV-DVFFIPPERCDTLLCD-IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             -----------GGGEEEEC---SC-CTTTSCCCCCSEEEEC-CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             -----------cccccchh---hh-hHHhcCCCcCCEEEee-CCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence                       11223222   11 1112235789999964 3222211       12467777788999997655

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0013  Score=47.33  Aligned_cols=97  Identities=13%  Similarity=0.032  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC-C
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN-E  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~-~  136 (222)
                      ...+|.+||-+|+|. |+.++.+++ .|++|+++|. ++-++.+++    .+..               .+.  +..+ .
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa~---------------~~i--~~~~~~   82 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD---------------HYI--ATLEEG   82 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---------------EEE--EGGGTS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCCc---------------EEe--eccchH
Confidence            455789999999995 887777764 5999999997 556666654    2311               111  1111 1


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +......+.||+|+-....-...    .+....++++|+|++++..
T Consensus        83 ~~~~~~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          83 DWGEKYFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CHHHHSCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECC
T ss_pred             HHHHhhhcccceEEEEecCCccc----hHHHHHHHhhccceEEEec
Confidence            11222356799888542221111    1345567789999887753

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.94  E-value=0.0016  Score=50.09  Aligned_cols=108  Identities=9%  Similarity=-0.005  Sum_probs=69.5

Q ss_pred             CCeEEEeCCCccHHHHHHHHhCC------------------------------------------EEEEecc-hhhHHHH
Q 027530           65 GKRVIELGAGCGVAGFGMALLGC------------------------------------------NVITTDQ-IEVLPLL  101 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~g~------------------------------------------~v~~~D~-~~~l~~~  101 (222)
                      +..++|--||+|.+.|.+|....                                          ++.+.|. +++++.+
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            34699999999999998886421                                          2346665 4466666


Q ss_pred             ---HHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc--ccCCCccEEEEeccccC-----c----cCHHHHHHH
Q 027530          102 ---KRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYA-----E----HLLEPLLQT  167 (222)
Q Consensus       102 ---~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~Ii~~d~~y~-----~----~~~~~ll~~  167 (222)
                         ++|+...++            ...+.+...|+.+.....  .....+++||+|+++=.     .    ..+..+...
T Consensus       131 ~~~r~n~~~Agl------------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~  198 (249)
T d1o9ga_         131 RRLRERLTAEGG------------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS  198 (249)
T ss_dssp             HHHHHHHHHTTS------------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC------------CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHH
Confidence               346665553            357888887765433221  13467899999988632     1    125667777


Q ss_pred             HHHhcCCCeEEEEEEEE
Q 027530          168 IFALSGPKTTILLGYEI  184 (222)
Q Consensus       168 ~~~~l~~~g~~~l~~~~  184 (222)
                      +++.+.....++++.+.
T Consensus       199 l~~~~p~~s~~~it~~~  215 (249)
T d1o9ga_         199 LASALPAHAVIAVTDRS  215 (249)
T ss_dssp             HHHHSCTTCEEEEEESS
T ss_pred             HHccCCCCcEEEEeCch
Confidence            88888766666666543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.76  E-value=0.012  Score=41.90  Aligned_cols=99  Identities=21%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=+|||. |+..+.+++ .|++|+++|. ++-++.+++-    +.              ...+.. +-...+
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--------------~~~~~~-~~~~~~   83 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--------------DVTLVV-DPAKEE   83 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--------------SEEEEC-CTTTSC
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--------------cEEEec-cccccc
Confidence            345788999999996 777776665 4889999997 5566666542    21              111110 101000


Q ss_pred             c------c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 H------I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~------~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .      . ......+|+|+-+-      -.+..+....++++|+|++++....
T Consensus        84 ~~~~~~~~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          84 ESSIIERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHHHHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             cchhhhhhhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence            0      0 11245789988432      1245677777899999998876543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.71  E-value=0.0011  Score=47.87  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        63 ~~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .+..+|+=||+|. |+.++..| .+|++|+..|. .+.++.++.-...                 ++....   .+...+
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----------------~~~~~~---~~~~~l   89 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----------------RVELLY---SNSAEI   89 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------------GSEEEE---CCHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----------------cceeeh---hhhhhH
Confidence            3557999999997 88888766 57999999998 5677766554332                 223222   111222


Q ss_pred             cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          140 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       140 ~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      ...-...|+||++-.+--.....-+-+..-+.+|||.+++
T Consensus        90 ~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          90 ETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             HHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            2223579999988665444433334566667788888654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.56  E-value=0.0025  Score=48.42  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             HHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027530           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (222)
Q Consensus        43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~  106 (222)
                      +.|.+++...        ...+|..|||--||+|..++++.++|-+.+++|+ ++.++.|++.+.
T Consensus       199 ~~L~~~lI~~--------~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         199 RDLIERIIRA--------SSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHH--------HCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH--------hCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            4566666544        2357889999999999999999999999999999 679999988765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0089  Score=42.63  Aligned_cols=95  Identities=24%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ...+|.+||=+|||. |+..+.+++ .|++++++|. ++-++.+++    .+..               .+  .+..+..
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad---------------~~--i~~~~~~   85 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---------------EV--VNSRNAD   85 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---------------EE--EETTCHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc---------------EE--EECchhh
Confidence            456789999999986 777777775 5888888886 555555543    2211               11  1222222


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ........+|+++-+--  .    ...+....++++++|++.+..
T Consensus        86 ~~~~~~~~~D~vid~~g--~----~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          86 EMAAHLKSFDFILNTVA--A----PHNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             HHHTTTTCEEEEEECCS--S----CCCHHHHHTTEEEEEEEEECC
T ss_pred             HHHHhcCCCceeeeeee--c----chhHHHHHHHHhcCCEEEEec
Confidence            22223457998875421  1    123455667899999988754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0014  Score=47.44  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=.|+ | .|..++.+|+ .|++|++++. ++-.+.+++    .+..               .+.  +..+.
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---------------~vi--~~~~~   83 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---------------EVF--NHREV   83 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---------------EEE--ETTST
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---------------ccc--ccccc
Confidence            3457899999996 4 3777777775 4889998886 444455443    3321               111  22222


Q ss_pred             ccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +..     ......+|+|+-+  .     -.+.+....+.++|+|++++.
T Consensus        84 ~~~~~i~~~t~~~g~d~v~d~--~-----g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          84 NYIDKIKKYVGEKGIDIIIEM--L-----ANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             THHHHHHHHHCTTCEEEEEES--C-----HHHHHHHHHHHEEEEEEEEEC
T ss_pred             cHHHHhhhhhccCCceEEeec--c-----cHHHHHHHHhccCCCCEEEEE
Confidence            110     1125679999854  2     235677778889999998775

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.43  E-value=0.0039  Score=47.93  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      ...|.+++...        ...+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++++..
T Consensus       193 P~~L~~~~I~~--------~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         193 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHh--------hcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            45666666554        2347889999999999999999999999999999 6689999888764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.016  Score=41.25  Aligned_cols=98  Identities=19%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+..+.+++ .|+ +|+++|. ++-++.+++    .+..               .+...+-.+.
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---------------~~~~~~~~~~   83 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---------------LVLQISKESP   83 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---------------EEEECSSCCH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---------------cccccccccc
Confidence            345778999999987 777776665 477 7999998 555555543    2321               1111111111


Q ss_pred             ccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          137 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       137 ~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .+.     ......+|+|+-+--      .+..++...++++++|++++...
T Consensus        84 ~~~~~~~~~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          84 QEIARKVEGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccccccccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEec
Confidence            100     012457899885422      24578888889999999887654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.37  E-value=0.0046  Score=48.90  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=37.4

Q ss_pred             CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027530           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~i~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (222)
                      ....+.+||||-||.|-.++.+-+.|.+ |.++|. +.+++..+.|.
T Consensus         7 ~~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1           7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             ccCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            3456789999999999999999999998 567898 55888887775

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.35  E-value=0.011  Score=43.18  Aligned_cols=80  Identities=11%  Similarity=0.155  Sum_probs=55.5

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ..+++||+||=.|++.|+   ++..+++.|++|+.++. .+.++.+.+.+..+.               .+.+...|..+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~   82 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---------------KVNVTAAETAD   82 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---------------TCCCEEEECCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---------------chhhhhhhccc
Confidence            468899999999987764   44566678999999998 566777666666543               33445556555


Q ss_pred             CccccccCCCccEEEEecc
Q 027530          136 EDHIKAVAPPFDYIIGTDV  154 (222)
Q Consensus       136 ~~~~~~~~~~fD~Ii~~d~  154 (222)
                      .......-+..|++|.+-.
T Consensus        83 ~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          83 DASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             HHHHHHHTTTCSEEEECCC
T ss_pred             HHHHHHHhcCcCeeeecCc
Confidence            5444333467899987643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.16  E-value=0.0023  Score=46.34  Aligned_cols=95  Identities=19%  Similarity=0.192  Sum_probs=57.8

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+.++.+++. |+ +|+++|. ++-++.+++    .+..               .+.  +..+.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---------------~~i--~~~~~   82 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---------------DIL--NYKNG   82 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---------------EEE--CGGGS
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---------------ccc--cccch
Confidence            455788999999997 8888877764 76 6999998 445555542    2211               111  11111


Q ss_pred             cc---c-c-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH---I-K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~---~-~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..   . . .....+|+||-+--      ....+....++++|+|++.+..
T Consensus        83 ~~~~~v~~~t~g~G~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          83 HIEDQVMKLTNGKGVDRVIMAGG------GSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             CHHHHHHHHTTTSCEEEEEECSS------CTTHHHHHHHHEEEEEEEEECC
T ss_pred             hHHHHHHHHhhccCcceEEEccC------CHHHHHHHHHHHhcCCEEEEEe
Confidence            10   0 0 12345999884421      1345677778889999987753

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.04  E-value=0.0039  Score=48.84  Aligned_cols=46  Identities=11%  Similarity=-0.008  Sum_probs=40.3

Q ss_pred             CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027530           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (222)
                      ..+|..|||--||+|..++++..+|.+.+++|+ ++.++.+++.+..
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            347889999999999999999999999999999 6788888776543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.04  Score=41.98  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.            ..++.+...|..+.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~------------~~~~~~~~~Dls~~   73 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY------------PGTLIPYRCDLSNE   73 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEEECCTTCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEEccCCCH
Confidence            45789999999999886   33455667999999998 5566766665654431            24677788888776


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      +...       ..-+..|++|.+--..
T Consensus        74 ~~v~~~v~~~~~~~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          74 EDILSMFSAIRSQHSGVDICINNAGLA  100 (257)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEeccccc
Confidence            5321       1135799998775443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0059  Score=48.67  Aligned_cols=43  Identities=12%  Similarity=0.098  Sum_probs=34.5

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecch-hhHHHHHHHH
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNV  105 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~-g~-~v~~~D~~-~~l~~~~~n~  105 (222)
                      .++.+|||+|.|.|.++..+... ++ +|+++|.+ ..++.+++..
T Consensus        42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~   87 (322)
T d1i4wa_          42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF   87 (322)
T ss_dssp             TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence            35678999999999999999876 44 79999994 4777776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.84  E-value=0.0057  Score=44.58  Aligned_cols=115  Identities=15%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             CCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCC-CCCceEEEEeecCCCc--
Q 027530           64 KGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGN-LLGSIQAVELDWGNED--  137 (222)
Q Consensus        64 ~~~~vLelGcG~-G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~--  137 (222)
                      +..+||=||+|. |+.++..| .+|++|+..|. .+.++.++....... ........... ...-.+-..-+|....  
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i-~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI-TVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC-CC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceE-EEeccccccccccccchhhcCHHHHHHHHH
Confidence            446999999997 88887766 57999999998 567777765322111 00000000000 0000000000111100  


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  179 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~  179 (222)
                      .+...-...|+||..-.+-......-+-+..-+.+|||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence            011112469999988666544433335566667789988654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.72  E-value=0.009  Score=42.34  Aligned_cols=94  Identities=22%  Similarity=0.184  Sum_probs=55.8

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ..+|.+||=.|||. |+..+.+++. |++|+++|. ++-++.+++    .+..                 ...+..+.+.
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~-----------------~~~~~~~~~~   83 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD-----------------LVVNPLKEDA   83 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS-----------------EEECTTTSCH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc-----------------eecccccchh
Confidence            45788999999997 7777766654 789999997 445555543    3321                 1112222111


Q ss_pred             ---ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          139 ---IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ---~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                         .......+|.++-. .     .-...+....++++|+|++++..
T Consensus        84 ~~~~~~~~~~~~~~v~~-~-----~~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          84 AKFMKEKVGGVHAAVVT-A-----VSKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHHHHHHHSSEEEEEES-S-----CCHHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhcccccCCCceEEee-c-----CCHHHHHHHHHHhccCCceEecc
Confidence               11112234444422 1     12567788888899999988754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.47  E-value=0.026  Score=40.30  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             CCCCCCeEEEeCC-Cc-cHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGA-GC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGc-G~-G~~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||=.|+ |. |..++.+++. |++|++++. ++-.+.+++    .+..             .  +  .+..+.
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~-------------~--~--i~~~~~   82 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE-------------E--A--ATYAEV   82 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS-------------E--E--EEGGGH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc-------------e--e--eehhhh
Confidence            4568899999985 43 6777767754 889999886 555555543    2321             1  1  122221


Q ss_pred             ccccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      .........+|+|+-  +.  -+    .+....+.++|+|++++.
T Consensus        83 ~~~~~~~~g~D~v~d--~~--G~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          83 PERAKAWGGLDLVLE--VR--GK----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHHHTTSEEEEEE--CS--CT----THHHHHTTEEEEEEEEEC
T ss_pred             hhhhhcccccccccc--cc--ch----hHHHHHHHHhcCCcEEEE
Confidence            111122457999884  32  12    235566789999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.46  E-value=0.059  Score=38.37  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+.++.+++ .|++ |+.+|. ++-++.+++    .+..               .+...+-.+.
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~---------------~~i~~~~~~~   85 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---------------HVINSKTQDP   85 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---------------EEEETTTSCH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe---------------EEEeCCCcCH
Confidence            355788999999986 767766664 4774 678887 445555554    2211               2222111111


Q ss_pred             cc--ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH--IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~--~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+  ....++.||+|+-+-      -....++...++++|+|++.+..
T Consensus        86 ~~~i~~~t~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          86 VAAIKEITDGGVNFALEST------GSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHHTTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHcCCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEe
Confidence            10  012245799988431      23567788888999999988754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.23  E-value=0.092  Score=40.09  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=57.7

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      +..++||++|=-|++.|+   ++..+++.|++|+++|.  ++.++.+.+.++.++              .++.+...|..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--------------~~~~~~~~D~~   78 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--------------SDAACVKANVG   78 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTT
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--------------CceeeEeCCCC
Confidence            345789999999999886   45566778999999986  346666666666554              36777887877


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 027530          135 NEDHIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       135 ~~~~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      +.+...       ..-+..|+++.+--..
T Consensus        79 ~~~~v~~~~~~~~~~~g~idilV~nag~~  107 (272)
T d1g0oa_          79 VVEDIVRMFEEAVKIFGKLDIVCSNSGVV  107 (272)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCccccccccc
Confidence            654321       1235789988775443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.21  E-value=0.03  Score=43.59  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             eEEEeCCCccHHHHHHHHhCCE-EEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           67 RVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la~~g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      +||||-||.|-.++.+-+.|.+ +.++|++ .+.+..+.|..                   -.....|..+....  .-+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------------------~~~~~~Di~~~~~~--~~~   60 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------------------AKLIKGDISKISSD--EFP   60 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------------------SEEEESCTTTSCGG--GSC
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------------------CCCccCChhhCCHh--Hcc
Confidence            6999999999999888888998 5589984 47776666642                   12344455444322  134


Q ss_pred             CccEEEEecc
Q 027530          145 PFDYIIGTDV  154 (222)
Q Consensus       145 ~fD~Ii~~d~  154 (222)
                      ..|+++++.+
T Consensus        61 ~~dll~~g~P   70 (324)
T d1dcta_          61 KCDGIIGGPP   70 (324)
T ss_dssp             CCSEEEECCC
T ss_pred             cccEEeeccc
Confidence            6899998744

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.037  Score=39.73  Aligned_cols=95  Identities=21%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+..+.+++ .|+ +|+++|. ++-++.+++.    +..               .+.  +..+.
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---------------~vi--~~~~~   83 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---------------LTL--NRRET   83 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---------------EEE--ETTTS
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---------------EEE--ecccc
Confidence            345789999999996 777777775 477 7999998 5566666542    211               111  11111


Q ss_pred             c--c-----cc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 D--H-----IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~--~-----~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .  +     .. .....+|+|+-+  .-.    +..++...++++++|++.+..
T Consensus        84 ~~~~~~~~i~~~~~~~g~Dvvid~--vG~----~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          84 SVEERRKAIMDITHGRGADFILEA--TGD----SRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             CHHHHHHHHHHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEECC
T ss_pred             chHHHHHHHHHhhCCCCceEEeec--CCc----hhHHHHHHHHhcCCCEEEEEe
Confidence            1  0     00 123469998843  211    345677778899999987653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.01  E-value=0.026  Score=43.45  Aligned_cols=81  Identities=21%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~~Dvs~~~   70 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV-----------SEKQVNSVVADVTTED   70 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-----------CGGGEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCceEEEEccCCCHH
Confidence            4689999999999885   44566678999999998 5677777776665542           1346888888887754


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.+-
T Consensus        71 ~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          71 GQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHhCCceEEEeCC
Confidence            321       1125799998763

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0095  Score=47.06  Aligned_cols=40  Identities=25%  Similarity=0.199  Sum_probs=31.6

Q ss_pred             CeEEEeCCCccHHHHHHHHhCC--E-EEEecc-hhhHHHHHHHH
Q 027530           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNV  105 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~~g~--~-v~~~D~-~~~l~~~~~n~  105 (222)
                      .+|+||.||.|-.++.+...|.  + |.++|. +.+++..+.|.
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~   46 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF   46 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC
Confidence            4799999999988888877786  4 568898 55777777664

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=94.92  E-value=0.025  Score=45.50  Aligned_cols=109  Identities=12%  Similarity=0.035  Sum_probs=66.2

Q ss_pred             CeEEEeCCCccHHHHHHHH------------hC------CEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCce
Q 027530           66 KRVIELGAGCGVAGFGMAL------------LG------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSI  126 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~------------~g------~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v  126 (222)
                      -+|.|+||.+|-.++.+..            .+      .+|.+.|++. =...+=+++....           ....++
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~-----------~~~~~~  121 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-----------DVDGVC  121 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-----------SCTTCE
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc-----------cCCCCe
Confidence            5799999999977743321            11      1488999843 3333323322111           011122


Q ss_pred             EEEEeecCCCccccccCCCccEEEEeccccCcc---------------------------------CHHHHHHHHHHhcC
Q 027530          127 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------LLEPLLQTIFALSG  173 (222)
Q Consensus       127 ~~~~~d~~~~~~~~~~~~~fD~Ii~~d~~y~~~---------------------------------~~~~ll~~~~~~l~  173 (222)
                       +...--+.+...-++.++.|++.++-.++|.+                                 ++..+|+.-.+-|.
T Consensus       122 -f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv  200 (359)
T d1m6ex_         122 -FINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV  200 (359)
T ss_dssp             -EEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC
T ss_pred             -EEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             33333355555556788899999988887732                                 23446666666789


Q ss_pred             CCeEEEEEEEEcC
Q 027530          174 PKTTILLGYEIRS  186 (222)
Q Consensus       174 ~~g~~~l~~~~r~  186 (222)
                      |||++++....|.
T Consensus       201 ~GG~mvl~~~gr~  213 (359)
T d1m6ex_         201 PGGRMVLTILGRR  213 (359)
T ss_dssp             TTCEEEEEEEECS
T ss_pred             CCcEEEEEEeccC
Confidence            9999999887764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.77  E-value=0.035  Score=42.72  Aligned_cols=80  Identities=24%  Similarity=0.212  Sum_probs=57.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+...
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~-----------~~~~~~~~~~Dv~~~~~   70 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV-----------PAEKINAVVADVTEASG   70 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------CGGGEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcceEEEEeeCCCHHH
Confidence            578999999999885   44566677999999998 5577777777766542           13478888888877643


Q ss_pred             cc-------ccCCCccEEEEec
Q 027530          139 IK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d  153 (222)
                      ..       ..-++.|++|.+-
T Consensus        71 v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          71 QDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHcCCceEEEeec
Confidence            21       1125789998763

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.73  E-value=0.055  Score=41.26  Aligned_cols=81  Identities=16%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=.|+..|+   ++..+++.|++|+.+|. ++-++.+.+.+...+              ..+.+...|..+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~D~s~~~   68 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LNVEGSVCDLLSRT   68 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CCceEEEeecCCHH
Confidence            4689999999999875   44566678999999998 556666666665443              35677788877665


Q ss_pred             ccc--------ccCCCccEEEEecccc
Q 027530          138 HIK--------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~--------~~~~~fD~Ii~~d~~y  156 (222)
                      ...        ......|+++.+--+.
T Consensus        69 ~~~~~~~~~~~~~~g~idilinnag~~   95 (258)
T d1ae1a_          69 ERDKLMQTVAHVFDGKLNILVNNAGVV   95 (258)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEecccccc
Confidence            321        2235788988764443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.066  Score=40.48  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..+.|+.+|=-|++.|+   ++..+++.|++|+.+|. .+-++.+.+.+...+              .++.....|..+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~Dvs~~   68 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--------------AKVHTFVVDCSNR   68 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCH
Confidence            35789999999999986   45567778999999998 566777766665433              4677888888876


Q ss_pred             cccc-------ccCCCccEEEEeccccC
Q 027530          137 DHIK-------AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~y~  157 (222)
                      +...       ...+..|++|.+--+..
T Consensus        69 ~~v~~~~~~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          69 EDIYSSAKKVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCceeEeeccccc
Confidence            5422       12467999887755543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.61  E-value=0.015  Score=41.32  Aligned_cols=95  Identities=18%  Similarity=0.155  Sum_probs=56.7

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGc-G-~G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ...++.+||=+|| | .|+..+.+++ .|. +|+.+|. ++-++.+++    .+..               .+.  +..+
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---------------~~i--~~~~   82 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---------------YVI--NASM   82 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---------------EEE--ETTT
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---------------eee--ccCC
Confidence            4557889999997 4 3666665554 564 7999997 445555554    2321               111  1111


Q ss_pred             Cccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          136 EDHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       136 ~~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .+..     ......||+|+-+-      --...++...+.++|+|++++..
T Consensus        83 ~~~~~~~~~~~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          83 QDPLAEIRRITESKGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESC------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred             cCHHHHHHHHhhcccchhhhccc------ccchHHHhhhhhcccCCEEEEec
Confidence            1110     11245699888542      23456677788899999988764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.57  E-value=0.052  Score=41.39  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+....            ...++.+...|..+.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~------------~~~~~~~~~~Dvt~~~~   69 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA------------PDAEVLTTVADVSDEAQ   69 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC------------TTCCEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------------CCCeEEEEeccCCCHHH
Confidence            578999999999886   45677788999999998 566666665554433            12467778888877654


Q ss_pred             cc-------ccCCCccEEEEec
Q 027530          139 IK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d  153 (222)
                      ..       ..-++.|++|.|-
T Consensus        70 v~~~~~~~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          70 VEAYVTATTERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECC
T ss_pred             HHHHHHHHHHHhCCCCEEEECC
Confidence            21       1125799998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.55  E-value=0.045  Score=41.77  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=55.0

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+...+              .++.+...|..+.+
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~~~~   67 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--------------VEARSYVCDVTSEE   67 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------------SCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCHH
Confidence            3589999999998876   45566778999999998 557777766665433              46777888887654


Q ss_pred             ccc-------ccCCCccEEEEe
Q 027530          138 HIK-------AVAPPFDYIIGT  152 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~  152 (222)
                      ...       ..-+..|++|.+
T Consensus        68 ~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          68 AVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCeehhh
Confidence            321       112579998865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.076  Score=40.23  Aligned_cols=87  Identities=18%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        64 ~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      .||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+....            ...++.+...|..+.+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~~Dv~~~~~v   69 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF------------EPQKTLFIQCDVADQQQL   69 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS------------CGGGEEEEECCTTSHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc------------CCCcEEEEEeecCCHHHH
Confidence            58899999998875   34456677999999998 555555555443221            124678888888775432


Q ss_pred             c-------ccCCCccEEEEeccccCccCHH
Q 027530          140 K-------AVAPPFDYIIGTDVVYAEHLLE  162 (222)
Q Consensus       140 ~-------~~~~~fD~Ii~~d~~y~~~~~~  162 (222)
                      .       ..-++.|++|.+--+.....++
T Consensus        70 ~~~~~~~~~~~G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          70 RDTFRKVVDHFGRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCSSSHH
T ss_pred             HHHHHHHHHHcCCcCeecccccccccccch
Confidence            1       1125799999887666555443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.39  E-value=0.082  Score=40.20  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=55.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--------------~~~~~~~~Dv~~~~   70 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--------------FKVEASVCDLSSRS   70 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CEEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CCceEEEeeCCCHH
Confidence            5689999999999876   45566677999999998 556666665555433              35677777877654


Q ss_pred             ccc--------ccCCCccEEEEeccc
Q 027530          138 HIK--------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~--------~~~~~fD~Ii~~d~~  155 (222)
                      ...        ....+.|++|.+--+
T Consensus        71 ~v~~~~~~~~~~~~~~idilvnnAG~   96 (259)
T d2ae2a_          71 ERQELMNTVANHFHGKLNILVNNAGI   96 (259)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCceEEEECCce
Confidence            321        123479999877443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.37  E-value=0.064  Score=40.68  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=53.8

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+.+|. .+.++.+.+.+....             ..++.+...|..+.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-------------g~~~~~~~~Dv~~~~   68 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-------------GVETMAFRCDVSNYE   68 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------CCCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-------------CCcEEEEEccCCCHH
Confidence            4689999999999875   44566778999999998 455554444443322             135677788877654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        69 ~v~~~~~~~~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          69 EVKKLLEAVKEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            321       112579999876444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.33  E-value=0.036  Score=42.51  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+..               ...+.+...|..+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---------------~~~~~~~~~Dv~~~~   67 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---------------PDVISFVHCDVTKDE   67 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---------------CCceEEEEccCCCHH
Confidence            4689999999999885   33456677999999998 4455555444432               235677788887654


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.+-
T Consensus        68 ~v~~~~~~~~~~~g~iD~lVnnA   90 (268)
T d2bgka1          68 DVRNLVDTTIAKHGKLDIMFGNV   90 (268)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHcCCcceecccc
Confidence            321       1125799998654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.017  Score=41.32  Aligned_cols=94  Identities=12%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             CCCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~--G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|++||=.|+|.  |...+.+|+ .|++|+++|. ++-++.+++    .+..               .+  .+..+.
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~---------------~v--i~~~~~   83 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW---------------QV--INYREE   83 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---------------EE--EETTTS
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe---------------EE--EECCCC
Confidence            345788999997665  666666665 5899999997 445566543    2321               11  222322


Q ss_pred             cccc-----ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DHIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~~~-----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +...     .....+|+|+-+  .-     .+.+......++++|++++..
T Consensus        84 d~~~~v~~~t~g~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          84 DLVERLKEITGGKKVRVVYDS--VG-----RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             CHHHHHHHHTTTCCEEEEEEC--SC-----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CHHHHHHHHhCCCCeEEEEeC--cc-----HHHHHHHHHHHhcCCeeeecc
Confidence            1110     124678988743  21     234567778889999876643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.29  E-value=0.054  Score=41.34  Aligned_cols=81  Identities=16%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ...++.+...|..+..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~~Dvt~~~   70 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV-----------SEQNVNSVVADVTTDA   70 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------CGGGEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcCceEEEEccCCCHH
Confidence            3689999999999875   34566677999999998 5577777776665542           1346888888887664


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.+-
T Consensus        71 ~v~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          71 GQDEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCEeeccc
Confidence            321       1125799988763

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.18  E-value=0.1  Score=40.21  Aligned_cols=83  Identities=20%  Similarity=0.339  Sum_probs=54.6

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +..++||++|=-|+..|+   ++..+++.|++|+++|. ++.++.+.+.+....             ...+.+...|..+
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-------------g~~~~~~~~D~~~   86 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-------------GNKVHAIQCDVRD   86 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-------------SSCEEEEECCTTC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-------------CCceEEEEecccC
Confidence            357899999999998874   44456667999999998 555555544443221             2356777777766


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 027530          136 EDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .+...       ...+..|+++.+--.
T Consensus        87 ~~~v~~~~~~~~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          87 PDMVQNTVSELIKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             hHHHHHHhhhhhhhccccchhhhhhhh
Confidence            54321       224679998876443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.16  E-value=0.073  Score=37.35  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~~v~~~D~-~~~l~~~~  102 (222)
                      ..+|.+||=+|||. |+..+.+++ .|++|+++|. ++-++.++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            45788999999987 877777775 4789999998 45555554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.13  E-value=0.04  Score=39.18  Aligned_cols=94  Identities=17%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+||=.|||. |+..+.+++ .|+ .|+++|. ++-++.+++    .+..               .+.  +..+..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---------------~~i--~~~~~~   88 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---------------HVV--DARRDP   88 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---------------EEE--ETTSCH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---------------eee--cCcccH
Confidence            45788999999997 777776664 576 6888997 445555553    2211               111  112111


Q ss_pred             c---cc-ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          138 H---IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       138 ~---~~-~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      .   .. .....+|+|+-+--      -...++...+.++++|++.+..
T Consensus        89 ~~~~~~~~~~~g~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          89 VKQVMELTRGRGVNVAMDFVG------SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHHHHTTTCCEEEEEESSC------CHHHHHHGGGGEEEEEEEEECC
T ss_pred             HHHHHHhhCCCCceEEEEecC------cchHHHHHHHHHhCCCEEEEEe
Confidence            0   01 12346898884321      2446777888899999988754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.11  E-value=0.6  Score=32.82  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~  103 (222)
                      ...+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++-++.+++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            466889999999997 777776665 476 6999998 556777654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.96  E-value=0.36  Score=34.45  Aligned_cols=102  Identities=13%  Similarity=-0.030  Sum_probs=53.2

Q ss_pred             CCCCCCeEEEeCCCc---cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           61 SKLKGKRVIELGAGC---GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        61 ~~~~~~~vLelGcG~---G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      ...+|.+||=+.+|+   |..++.+|+ .|++|+++-. ++-.+...+.++..+..            ..+.....++.+
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad------------~vi~~~~~~~~~   92 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT------------QVITEDQNNSRE   92 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS------------EEEEHHHHHCGG
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc------------EEEeccccchhH
Confidence            345677888874443   556665664 4899877642 33334333444444421            011111111111


Q ss_pred             Cccc-----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          136 EDHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       136 ~~~~-----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ....     ......+|+|+  |++     -.+.+....+.|+|+|+++..
T Consensus        93 ~~~~v~~~~~~~g~~vdvv~--D~v-----g~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          93 FGPTIKEWIKQSGGEAKLAL--NCV-----GGKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             GHHHHHHHHHHHTCCEEEEE--ESS-----CHHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHHHHhhccCCceEEE--ECC-----CcchhhhhhhhhcCCcEEEEE
Confidence            1100     01245688888  343     234556677899999998764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.12  Score=40.22  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      |..++||++|=-|++.|+   ++..+++.|++|+++|. .+-++.+.+.+..+...         ....++.+...|..+
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~---------~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---------TKQARVIPIQCNIRN   77 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT---------TCCCCEEEEECCTTC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc---------ccCceEEEEeccCCC
Confidence            567899999999999885   33456677999999998 55666665555443211         123467888888877


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 027530          136 EDHIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      .+...       ..-++.|++|.+--.
T Consensus        78 ~~~v~~~~~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          78 EEEVNNLVKSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence            65422       113579999976544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.95  E-value=0.11  Score=39.58  Aligned_cols=82  Identities=16%  Similarity=0.025  Sum_probs=56.1

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++||++|=-|++.|+   ++..+++.|++|+.+|. ++-++.+.+.+...+              .++.....|..+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--------------~~~~~~~~Dv~~~   69 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--------------FQVTGSVCDASLR   69 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CceEEEeccCCCH
Confidence            35689999999999886   45566778999999998 556666665555433              3677778777665


Q ss_pred             cccc--------ccCCCccEEEEecccc
Q 027530          137 DHIK--------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       137 ~~~~--------~~~~~fD~Ii~~d~~y  156 (222)
                      ....        ...++.|++|.+--+.
T Consensus        70 ~~v~~~~~~~~~~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          70 PEREKLMQTVSSMFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred             HHHHHHHHHHHHHhCCCccccccccccc
Confidence            4321        1136799998875443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.92  E-value=0.077  Score=40.32  Aligned_cols=82  Identities=21%  Similarity=0.146  Sum_probs=54.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+.+|. ++-+..+.+.+....             ..++.+...|..+.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-------------g~~~~~~~~Dv~~~~   72 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-------------GVKTKAYQCDVSNTD   72 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-------------TCCEEEEECCTTCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-------------CCceEEEEccCCCHH
Confidence            5789999999998875   44566677999999998 444444444333221             136777888887765


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-++.|++|.+--+.
T Consensus        73 ~v~~~~~~~~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          73 IVTKTIQQIDADLGPISGLIANAGVS   98 (260)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEeccccccc
Confidence            321       1236899998775443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.91  E-value=0.085  Score=39.92  Aligned_cols=82  Identities=13%  Similarity=0.061  Sum_probs=56.5

Q ss_pred             CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ..++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+              .++.....|..+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--------------~~~~~~~~Dvt~~   71 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--------------YESSGYAGDVSKK   71 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--------------CCEEEEECCTTCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEccCCCH
Confidence            34688999999998874   33445567999999998 556666666665433              3677788888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      +...       ..-++.|++|.+-.+.
T Consensus        72 ~~v~~~~~~~~~~~g~iDilvnnag~~   98 (251)
T d2c07a1          72 EEISEVINKILTEHKNVDILVNNAGIT   98 (251)
T ss_dssp             HHHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCceeeeeccccc
Confidence            4321       1236899998876553

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.071  Score=40.50  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=55.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+              .++.+...|..+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--------------~~~~~~~~Dvs~~~   73 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--------------GQAFACRCDITSEQ   73 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------------CcEEEEEccCCCHH
Confidence            4689999999998876   33456667999999998 556676666665443              36677788877654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-++.|++|.+--+.
T Consensus        74 ~~~~~~~~~~~~~g~iDilvnnAG~~   99 (255)
T d1fmca_          74 ELSALADFAISKLGKVDILVNNAGGG   99 (255)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEeeeCCcCC
Confidence            321       1125799988775443

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.82  E-value=0.19  Score=38.99  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             CeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc--ccc--
Q 027530           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED--HIK--  140 (222)
Q Consensus        66 ~~vLelGcG~G~~~i~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~--  140 (222)
                      +.|+.||||.=.-+.-+.. .+.+++=+|.+++++.=++-+..++..          ...+......|..+.-  .+.  
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~----------~~~~~~~v~~Dl~~~~~~~L~~~  160 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT----------PTADRREVPIDLRQDWPPALRSA  160 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC----------CSSEEEEEECCTTSCHHHHHHHT
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCC----------CCceEEEecccccchHHHHHHhc
Confidence            3577799997655555432 344688888899888777777766532          1245566665554321  111  


Q ss_pred             -ccCCCccEEEEeccccC--ccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          141 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       141 -~~~~~fD~Ii~~d~~y~--~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                       ......-++++-.++++  .+....+++.+..+..||+.+.+-+.
T Consensus       161 g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         161 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence             11233445666666654  45678899999999999998877654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.78  E-value=0.032  Score=40.10  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             CCCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~--G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=.|++.  |..++.+++ .|++|++++. ++-.+.+++    .+..               .++  +-.+.
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga~---------------~vi--~~~~~   84 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD---------------AAF--NYKTV   84 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---------------EEE--ETTSC
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhhh---------------hhc--ccccc
Confidence            445789999888865  555566665 4889999986 444444443    2211               111  11111


Q ss_pred             cc-----ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH-----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~-----~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..     .......+|+|+=  ++     -.+.++...++++++|++++..
T Consensus        85 ~~~~~~~~~~~~~Gvd~v~D--~v-----G~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          85 NSLEEALKKASPDGYDCYFD--NV-----GGEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             SCHHHHHHHHCTTCEEEEEE--SS-----CHHHHHHHGGGEEEEEEEEECC
T ss_pred             cHHHHHHHHhhcCCCceeEE--ec-----CchhhhhhhhhccCCCeEEeec
Confidence            11     0112456999883  33     2457888899999999987753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.73  E-value=0.28  Score=34.19  Aligned_cols=107  Identities=12%  Similarity=0.117  Sum_probs=60.0

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           67 RVIELGAGC-G-VAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        67 ~vLelGcG~-G-~~~i~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|+=+|||. | .++..+.+.|.  +|+++|. ++.++.++++    +.               +....   .+..  ..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---------------~~~~~---~~~~--~~   58 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---------------IDEGT---TSIA--KV   58 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---------------CSEEE---SCGG--GG
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---------------chhhh---hhhh--hh
Confidence            577788874 2 34445555664  7999998 5566665542    11               11111   1111  11


Q ss_pred             cCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHHhcCC
Q 027530          142 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  201 (222)
Q Consensus       142 ~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~~~~~  201 (222)
                      .....|+|+.+-+.   .....++..+...++++..+.-+...+.. ..+.+.+.....|
T Consensus        59 ~~~~~dlIila~p~---~~~~~vl~~l~~~~~~~~ii~d~~s~k~~-~~~~~~~~~~~~~  114 (171)
T d2g5ca2          59 EDFSPDFVMLSSPV---RTFREIAKKLSYILSEDATVTDQGSVKGK-LVYDLENILGKRF  114 (171)
T ss_dssp             GGTCCSEEEECSCH---HHHHHHHHHHHHHSCTTCEEEECCSCCTH-HHHHHHHHHGGGE
T ss_pred             hccccccccccCCc---hhhhhhhhhhhccccccccccccccccHH-HHHHHHHhhcccc
Confidence            23468999887663   44667888888889988766544433332 3334444344443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.63  E-value=0.053  Score=41.12  Aligned_cols=80  Identities=21%  Similarity=0.232  Sum_probs=54.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+..               ..++.+...|..+.+
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~Dv~~~~   67 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQHDSSDED   67 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---------------CCcEEEEEccCCCHH
Confidence            4689999999998875   44566677999999998 5556555554421               246788888887664


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-++.|++|.+--+.
T Consensus        68 ~v~~~~~~~~~~~G~iDiLVnnAg~~   93 (251)
T d1zk4a1          68 GWTKLFDATEKAFGPVSTLVNNAGIA   93 (251)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCceEEEeccccc
Confidence            321       1125799998775443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.46  E-value=0.17  Score=38.19  Aligned_cols=82  Identities=15%  Similarity=0.209  Sum_probs=55.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      .+.||++|=-|++.|+   ++..+++.|++|+.++.  ++.++.+.+.+..++              .++.....|..+.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--------------~~~~~~~~D~~~~   68 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--------------AQGVAIQADISKP   68 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--------------CCceEecCCCCCH
Confidence            4689999999988774   45566677999887653  446777777776554              4677788887765


Q ss_pred             cccc-------ccCCCccEEEEeccccC
Q 027530          137 DHIK-------AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~y~  157 (222)
                      +...       ..-+..|++|.+--+..
T Consensus        69 ~~v~~~~~~~~~~~g~idilinnag~~~   96 (259)
T d1ja9a_          69 SEVVALFDKAVSHFGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCcEEEecccccc
Confidence            4321       12357899887755543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.44  E-value=0.2  Score=39.96  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=27.2

Q ss_pred             CCeEEEeCCCccHHHHHHHHh---------CCEEEEecchhhHHHHHHH
Q 027530           65 GKRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKRN  104 (222)
Q Consensus        65 ~~~vLelGcG~G~~~i~la~~---------g~~v~~~D~~~~l~~~~~n  104 (222)
                      ..+|+|+|+|.|.++.-+...         ..+++.++.+..+...+++
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            357999999999887654432         1258889986655555443

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.13  Score=39.17  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=54.5

Q ss_pred             CCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecC
Q 027530           59 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWG  134 (222)
Q Consensus        59 ~~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~  134 (222)
                      .|..++||++|=-|++.|+   ++..+++.|++|++++. .+.++.+.+.+....             ...+.....|..
T Consensus         8 ~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~~d~~   74 (269)
T d1xu9a_           8 RPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-------------AASAHYIAGTME   74 (269)
T ss_dssp             CGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-------------CSEEEEEECCTT
T ss_pred             CccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-------------cccchhhhhhhh
Confidence            3556899999999999985   44556677999999998 556666655444332             134555555544


Q ss_pred             CCccc-------cccCCCccEEEEeccccC
Q 027530          135 NEDHI-------KAVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       135 ~~~~~-------~~~~~~fD~Ii~~d~~y~  157 (222)
                      +....       ....+..|+++.+...+.
T Consensus        75 ~~~~~~~~~~~~~~~~g~~~~li~nag~~~  104 (269)
T d1xu9a_          75 DMTFAEQFVAQAGKLMGGLDMLILNHITNT  104 (269)
T ss_dssp             CHHHHHHHHHHHHHHHTSCSEEEECCCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCcccccccccccc
Confidence            33221       112356888887655543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.37  E-value=0.027  Score=40.35  Aligned_cols=93  Identities=19%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             CCCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGc-G-~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=.|+ | .|..++-+|+ .|++|++++. ++-.+.+++    .+..               .+  .+..+.
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---------------~v--i~~~~~   80 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---------------YV--GDSRSV   80 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---------------EE--EETTCS
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---------------cc--ccCCcc
Confidence            3457889999874 4 3666666664 4889888775 444444442    3321               11  122222


Q ss_pred             cccc-----ccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 DHIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 ~~~~-----~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      +...     .....||+|+-+  .-     .+.++.+.++|+++|+++..
T Consensus        81 ~~~~~v~~~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          81 DFADEILELTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             THHHHHHHHTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEEEEEEC
T ss_pred             CHHHHHHHHhCCCCEEEEEec--cc-----chHHHHHHHHhcCCCEEEEE
Confidence            1111     124679999953  31     23556677889999998764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.36  E-value=0.13  Score=36.83  Aligned_cols=98  Identities=12%  Similarity=0.002  Sum_probs=56.3

Q ss_pred             CCCCCeEEEeCCCc--cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGC--GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~--G~~~i~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ..+|.+||=-|++.  |..++-++ .+|++|+++-. ++-.+.+++    .+..            .-+. ..-+|.+. 
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa~------------~vi~-~~~~~~~~-   90 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK------------EVLA-REDVMAER-   90 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS------------EEEE-CC-------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----cccc------------eeee-cchhHHHH-
Confidence            44678999999654  56666666 45899999986 455555543    2211            0111 11111111 


Q ss_pred             cccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEE
Q 027530          138 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  184 (222)
Q Consensus       138 ~~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~  184 (222)
                      .....++.+|+|+=  ++     -...+....+.|+|+|+++.....
T Consensus        91 ~~~~~~~gvD~vid--~v-----gg~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          91 IRPLDKQRWAAAVD--PV-----GGRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             ---CCSCCEEEEEE--CS-----TTTTHHHHHHTEEEEEEEEECSCC
T ss_pred             HHHhhccCcCEEEE--cC-----CchhHHHHHHHhCCCceEEEeecc
Confidence            01123568998883  22     234577778889999998876544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.34  E-value=0.061  Score=38.23  Aligned_cols=96  Identities=14%  Similarity=0.054  Sum_probs=54.6

Q ss_pred             CCCCeEEEeCCC--ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAG--CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG--~G~~~i~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++.+||=-|++  .|..++-+|+ +|++|+++.- ++-.+.+++.    +..             . .+..-++.....
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-------------~-vi~~~~~~~~~~   83 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-------------E-VISREDVYDGTL   83 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-------------E-EEEHHHHCSSCC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-------------c-eEeccchhchhh
Confidence            356678877743  3666666664 4999999987 4455555432    211             1 111111111111


Q ss_pred             ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEE
Q 027530          139 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  183 (222)
Q Consensus       139 ~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~  183 (222)
                      .....+.+|+|+=+  +     -.+.+....+.|+|+|++++...
T Consensus        84 ~~~~~~gvd~vid~--v-----gg~~~~~~~~~l~~~G~iv~~G~  121 (167)
T d1tt7a2          84 KALSKQQWQGAVDP--V-----GGKQLASLLSKIQYGGSVAVSGL  121 (167)
T ss_dssp             CSSCCCCEEEEEES--C-----CTHHHHHHHTTEEEEEEEEECCC
T ss_pred             hcccCCCceEEEec--C-----cHHHHHHHHHHhccCceEEEeec
Confidence            12235679988732  2     24567788888999999876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.23  E-value=0.12  Score=37.57  Aligned_cols=101  Identities=21%  Similarity=0.086  Sum_probs=60.7

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||-+|||. |+.++.+++ .|+ +|+++|. ++-++.+++.    +..               .+.  +-.+.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~---------------~~~--~~~~~   80 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE---------------IAD--LSLDT   80 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE---------------EEE--TTSSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc---------------EEE--eCCCc
Confidence            455789999999997 877777775 466 7999998 5566665542    211               111  00110


Q ss_pred             cc---c--cccCCCccEEEEecc---cc------CccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH---I--KAVAPPFDYIIGTDV---VY------AEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~---~--~~~~~~fD~Ii~~d~---~y------~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +.   .  ......+|+++-+--   ..      ........++...+.++|+|++.+..
T Consensus        81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence            00   0  012456898874311   10      11223568899999999999987763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.20  E-value=0.14  Score=36.07  Aligned_cols=100  Identities=18%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccccc
Q 027530           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAV  142 (222)
Q Consensus        66 ~~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  142 (222)
                      ++|-=+|+|. | .++..|++.|.+|++.|. ++-++.++.+-. +...    .+     ............  ......
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~----~~-----~~~~~~~~~~~~--~~~~e~   69 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA-IIAE----GP-----GLAGTAHPDLLT--SDIGLA   69 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS-EEEE----SS-----SCCEEECCSEEE--SCHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-Cchh----hh-----hhhhhhhhhhhh--hhhHhH
Confidence            5677789986 4 356667778999999998 554444432211 1000    00     000010000000  011111


Q ss_pred             CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEE
Q 027530          143 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  180 (222)
Q Consensus       143 ~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l  180 (222)
                      -..+|+|+.+-.   ......+++.+..+++++..+++
T Consensus        70 ~~~aD~iii~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          70 VKDADVILIVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             HTTCSEEEECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             hcCCCEEEEEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            257899987633   34578899999999999886654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.09  E-value=0.23  Score=31.69  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             CCCCCCCeEEEeCCC-ccHHH--HHHHHhCCEEEEecc
Q 027530           60 PSKLKGKRVIELGAG-CGVAG--FGMALLGCNVITTDQ   94 (222)
Q Consensus        60 ~~~~~~~~vLelGcG-~G~~~--i~la~~g~~v~~~D~   94 (222)
                      |.....+++.=+|.| +|.-+  ..+..+|.+|++.|.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~   40 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI   40 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence            445566788888854 57655  566678999999997

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.05  E-value=0.11  Score=39.40  Aligned_cols=80  Identities=13%  Similarity=0.195  Sum_probs=54.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      ++||++|=-|++.|+   ++..+++.|++|+.+|. + +.++.+.+.+....             ..++.+...|..+.+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-------------g~~~~~~~~Dv~~~~   68 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-------------GVKVLYDGADLSKGE   68 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-------------TSCEEEECCCTTSHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            478999999999886   44567778999999997 3 35666666554432             246778888887764


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--+
T Consensus        69 ~v~~~~~~~~~~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          69 AVRGLVDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeccc
Confidence            332       112579999876443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.99  E-value=0.092  Score=40.02  Aligned_cols=81  Identities=20%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++ .++.+.+.++..+              .++.+...|..+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--------------~~~~~~~~Dvt~~   69 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--------------GEAIAVKGDVTVE   69 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--------------CEEEEEECCTTSH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--------------CcEEEEEccCCCH
Confidence            5789999999999885   34556677999999986 33 5666666665443              3567778888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 027530          137 DHIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       137 ~~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      +...       ..-++.|++|.+--+.
T Consensus        70 ~~v~~~~~~~~~~~G~iDiLVnnAG~~   96 (261)
T d1geea_          70 SDVINLVQSAIKEFGKLDVMINNAGLE   96 (261)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEeeccceec
Confidence            4321       1125799998775443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.75  E-value=0.27  Score=34.81  Aligned_cols=98  Identities=15%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+.++.+++. |+ .|+.+|. ++-++.+++    -+..               .+....-.+.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---------------~~i~~~~~~~   85 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---------------DCLNPRELDK   85 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---------------EEECGGGCSS
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---------------cccCCccchh
Confidence            456788999999998 9999888865 77 5999998 445555544    2211               1111000110


Q ss_pred             cc----ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCC-eEEEEEEE
Q 027530          137 DH----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLGYE  183 (222)
Q Consensus       137 ~~----~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~-g~~~l~~~  183 (222)
                      ..    .......+|+++-+  .    -.+..+....+.++++ |++.+...
T Consensus        86 ~~~~~~~~~~~~G~d~vie~--~----G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          86 PVQDVITELTAGGVDYSLDC--A----GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             CHHHHHHHHHTSCBSEEEES--S----CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhhhHhhhhcCCCcEEEEe--c----ccchHHHHHHHHhhcCCeEEEecCC
Confidence            00    01124678998743  1    2356778888888885 88877654

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.70  E-value=0.67  Score=32.01  Aligned_cols=86  Identities=12%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccC
Q 027530           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVA  143 (222)
Q Consensus        67 ~vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  143 (222)
                      +|.=+|+|. | .++..+.+.|.+|++.|. ++.++.+++    ++.               +....   .+.+    .-
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~---------------~~~~~---~~~~----~~   55 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL---------------VDEAG---QDLS----LL   55 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS---------------CSEEE---SCGG----GG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc---------------cceee---eecc----cc
Confidence            455678874 3 355566677999999998 455554432    221               11111   1111    13


Q ss_pred             CCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          144 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       144 ~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                      ...|+|+.+-+   ......+++.+...++++..+.-.
T Consensus        56 ~~~DiIilavp---~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          56 QTAKIIFLCTP---IQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             TTCSEEEECSC---HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             cccccccccCc---Hhhhhhhhhhhhhhcccccceeec
Confidence            57899987644   345677888888888888866433

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=0.15  Score=38.22  Aligned_cols=76  Identities=22%  Similarity=0.358  Sum_probs=48.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+..                  ..+.....|..+.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------------------~~~~~~~~Dv~~~~   63 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------------------PGIEPVCVDLGDWD   63 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------------------TTCEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------------------CCCeEEEEeCCCHH
Confidence            4689999999998875   44556677999999997 44333332211                  13556677776654


Q ss_pred             ccc---ccCCCccEEEEeccc
Q 027530          138 HIK---AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~---~~~~~fD~Ii~~d~~  155 (222)
                      ...   ..-++.|++|.+--+
T Consensus        64 ~v~~~~~~~g~iDilVnnAg~   84 (242)
T d1cyda_          64 ATEKALGGIGPVDLLVNNAAL   84 (242)
T ss_dssp             HHHHHHTTCCCCSEEEECCCC
T ss_pred             HHHHHHHHcCCCeEEEECCcc
Confidence            321   112579999876433

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.21  Score=37.37  Aligned_cols=77  Identities=18%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                 .++.....|..+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----------------~~~~~~~~Dv~~~~   63 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----------------ANGKGLMLNVTDPA   63 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----------------GGEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----------------CCCcEEEEEecCHH
Confidence            3689999999999885   34456677999999998 455555444332                 24566677776654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+--.
T Consensus        64 ~v~~~~~~~~~~~g~iDilVnnAg~   88 (243)
T d1q7ba_          64 SIESVLEKIRAEFGEVDILVNNAGI   88 (243)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HhhhhhhhhhcccCCcceehhhhhh
Confidence            321       123579999876443

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.20  E-value=0.14  Score=38.49  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                 .++.+...|..+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~~Dv~~~~   65 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DAARYVHLDVTQPA   65 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GGEEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----------------CcceEEEeecCCHH
Confidence            4689999999999885   44566677999999998 544444433321                 25667777877654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-+..|++|.+--+.
T Consensus        66 ~v~~~~~~~~~~~g~idilinnAG~~   91 (244)
T d1nffa_          66 QWKAAVDTAVTAFGGLHVLVNNAGIL   91 (244)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCccc
Confidence            321       1125789998775443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.13  Score=38.96  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+..                  ..+.+...|..+.+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------------------~~~~~~~~Dvs~~~   64 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------------------PGAVFILCDVTQED   64 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------------TTEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------------------CCCeEEEccCCCHH
Confidence            5689999999998875   44556677999999998 44554433221                  24566777776654


Q ss_pred             ccc-------ccCCCccEEEEecc
Q 027530          138 HIK-------AVAPPFDYIIGTDV  154 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~  154 (222)
                      ...       ..-++.|++|.+--
T Consensus        65 ~v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          65 DVKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEeccc
Confidence            321       11257899987643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.94  E-value=0.39  Score=33.97  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=+|||. |+.++..++. |+ +|+++|. ++-++.+++-=..                   .++  ++.+.
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------------------~~i--n~~~~   84 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------------------ECI--SPKDS   84 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------------------EEE--CGGGC
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------------------EEE--Ccccc
Confidence            356789999999996 7777776654 64 7999998 6677777653221                   111  11111


Q ss_pred             cc-----c-cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEE
Q 027530          137 DH-----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       137 ~~-----~-~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      +.     . ......+|+++-+     ......+...+..+.+++|++++..
T Consensus        85 ~~~~~~~~~~~~g~G~d~vi~~-----~g~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          85 TKPISEVLSEMTGNNVGYTFEV-----IGHLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             SSCHHHHHHHHHTSCCCEEEEC-----SCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred             chHHHHHHHHhccccceEEEEe-----CCchHHHHHHHHHhhcCCeEEEEEE
Confidence            10     0 1124579988744     2334445555666667768877654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.88  E-value=0.28  Score=36.95  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc
Q 027530           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK  140 (222)
Q Consensus        65 ~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  140 (222)
                      ||.+|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+...+              .++.+...|..+.+...
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--------------~~~~~~~~Dvs~~~~v~   67 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--------------VEADGRTCDVRSVPEIE   67 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTCHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeecCCHHHHH
Confidence            5667888888775   44556677999999998 556776666665443              36778888887665321


Q ss_pred             -------ccCCCccEEEEecc
Q 027530          141 -------AVAPPFDYIIGTDV  154 (222)
Q Consensus       141 -------~~~~~fD~Ii~~d~  154 (222)
                             ..-++.|++|.|--
T Consensus        68 ~~~~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          68 ALVAAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHHHHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHHHHhCCCCEEEeccc
Confidence                   12367999987643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.71  E-value=0.17  Score=38.36  Aligned_cols=78  Identities=22%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||++|=-|++.|+   ++..+++.|++|+.+|. ++.++.+.+.+                 ..++.+...|..+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----------------~~~~~~~~~Dv~~~~   64 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----------------GDAARYQHLDVTIEE   64 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------------GGGEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------------CCceEEEEcccCCHH
Confidence            5789999999999885   44566678999999998 44333322211                 136778888887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-++.|++|.+--+.
T Consensus        65 ~v~~~~~~~~~~~g~iDilVnnAg~~   90 (254)
T d1hdca_          65 DWQRVVAYAREEFGSVDGLVNNAGIS   90 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCccEEEecCccc
Confidence            321       1125799988765443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.28  Score=36.72  Aligned_cols=77  Identities=26%  Similarity=0.397  Sum_probs=49.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+..                  ..+.....|..+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------------------~~~~~~~~Dv~d~~   65 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------------------PGIEPVCVDLGDWE   65 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------------------TTCEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------------------CCCeEEEEeCCCHH
Confidence            4689999999999885   44556677999999998 44444333211                  13456666776554


Q ss_pred             ccc---ccCCCccEEEEecccc
Q 027530          138 HIK---AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~---~~~~~fD~Ii~~d~~y  156 (222)
                      ...   ..-++.|++|.+--+.
T Consensus        66 ~v~~~~~~~g~iDilVnnAg~~   87 (244)
T d1pr9a_          66 ATERALGSVGPVDLLVNNAAVA   87 (244)
T ss_dssp             HHHHHHTTCCCCCEEEECCCCC
T ss_pred             HHHHHHHHhCCceEEEeccccc
Confidence            321   1235799998765443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.26  E-value=0.35  Score=39.04  Aligned_cols=48  Identities=17%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhc
Q 027530           63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTS  110 (222)
Q Consensus        63 ~~~~~vLelGcG~G~~~i~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (222)
                      .++..++|+||-.|..+..++..    +.+|++.+. +...+.+++|++.|..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            35678999999999888766543    347999997 7799999999998764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.23  Score=31.25  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             EEEeC-CCccHHH--HHHHHhCCEEEEecch
Q 027530           68 VIELG-AGCGVAG--FGMALLGCNVITTDQI   95 (222)
Q Consensus        68 vLelG-cG~G~~~--i~la~~g~~v~~~D~~   95 (222)
                      |-=+| ||+|.-+  ..+..+|.+|++.|..
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            33344 4567655  4566779999999973

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.85  E-value=0.67  Score=34.40  Aligned_cols=77  Identities=21%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=.|++.|+   ++..+++.|++|+.++.+ +.++.+   ++..              ..++.+.+.|..+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~--------------~~~~~~~~~Dls~~~   64 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA---VAAL--------------EAEAIAVVADVSDPK   64 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHTC--------------CSSEEEEECCTTSHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHc--------------CCceEEEEecCCCHH
Confidence            4689999999999876   334555679999999984 433322   2211              246677787877654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVV  155 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~  155 (222)
                      ...       ..-++.|++|.+-..
T Consensus        65 ~i~~~~~~i~~~~g~iDiLinnAg~   89 (241)
T d2a4ka1          65 AVEAVFAEALEEFGRLHGVAHFAGV   89 (241)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred             HHHHHHHHHHHHhCCccEecccccc
Confidence            431       112579999886443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.71  E-value=1.1  Score=33.12  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=34.9

Q ss_pred             CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhh
Q 027530           62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNT  109 (222)
Q Consensus        62 ~~~~~~vLelGcG~--G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (222)
                      .++||++|=-|++.  |+   ++..+++.|++|+++|. ++..+.+++.....+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC
Confidence            35889999998865  64   55677788999999998 446666665555443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.64  E-value=0.41  Score=35.92  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             eEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcccc--
Q 027530           67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIK--  140 (222)
Q Consensus        67 ~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  140 (222)
                      .+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+              .++.+...|..+.+...  
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--------------~~~~~~~~Dv~~~~~v~~~   68 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--------------GHAVAVKVDVSDRDQVFAA   68 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCEEEEECCTTSHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEeeCCCHHHHHHH
Confidence            45777888775   44556678999999998 556776666665443              36777888887654321  


Q ss_pred             -----ccCCCccEEEEec
Q 027530          141 -----AVAPPFDYIIGTD  153 (222)
Q Consensus       141 -----~~~~~fD~Ii~~d  153 (222)
                           ..-++.|++|.+-
T Consensus        69 ~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          69 VEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             HHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHhCCccEEEecc
Confidence                 1236799998764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.65  Score=35.03  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=63.2

Q ss_pred             CCeE-EEeCCCccH---HHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           65 GKRV-IELGAGCGV---AGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        65 ~~~v-LelGcG~G~---~~i~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      |++| |==|++.|+   ++..+++. |++|+.++. .+-++.+.+.++..+              .++.+..+|..+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~Dvs~~~s   67 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------LSPRFHQLDIDDLQS   67 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------CCCEEEECCTTCHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEEEecCCHHH
Confidence            5676 666777775   23345665 789999997 556666666665433              367788888877653


Q ss_pred             cc-------ccCCCccEEEEeccccCcc--------CH-----------HHHHHHHHHhcCCCeEEEEEE
Q 027530          139 IK-------AVAPPFDYIIGTDVVYAEH--------LL-----------EPLLQTIFALSGPKTTILLGY  182 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~y~~~--------~~-----------~~ll~~~~~~l~~~g~~~l~~  182 (222)
                      ..       ..-++.|++|.|--+....        .+           -.+.+.+..+|+++|+++...
T Consensus        68 v~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          68 IRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            21       1135799999875443211        11           124444555667788876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.28  E-value=0.24  Score=37.31  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                 .+..+...|..+..
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Dv~~~~   65 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----------------ERSMFVRHDVSSEA   65 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----------------TTEEEECCCTTCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CCeEEEEeecCCHH
Confidence            4689999999998875   44556677999999998 445554443321                 24556666666543


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 027530          138 HIK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ...       ..-++.|++|.+--+.
T Consensus        66 ~~~~~~~~~~~~~g~iDilVnnAG~~   91 (253)
T d1hxha_          66 DWTLVMAAVQRRLGTLNVLVNNAGIL   91 (253)
T ss_dssp             HHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCCeEEeccccc
Confidence            321       1125789998775443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.36  E-value=0.3  Score=36.75  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=51.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+   +              .++.+...|..+.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--------------~~~~~~~~Dvt~~~~   65 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G--------------PAACAIALDVTDQAS   65 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--------------TTEEEEECCTTCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--------------CceEEEEeeCCCHHH
Confidence            578999999998875   44566677999999998 44444443322   1              356777878776543


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 027530          139 IK-------AVAPPFDYIIGTDVVYA  157 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~y~  157 (222)
                      ..       ..-++.|++|.+--++.
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          66 IDRCVAELLDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCccEEEeeccccc
Confidence            22       11257999988755543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.34  E-value=0.85  Score=34.09  Aligned_cols=89  Identities=18%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-chhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      +++||+||=-|++.|+   ++..+++.|++|+.++ ..+-.+.+.+-...+.             ...+.+...|.....
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~   68 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP-------------KVNITFHTYDVTVPV   68 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT-------------TSEEEEEECCTTSCH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC-------------CCCEEEEEeecCCCH
Confidence            4689999999999986   3445556799877664 3332232222222221             246677777765322


Q ss_pred             -ccc-------ccCCCccEEEEeccccCccCHHH
Q 027530          138 -HIK-------AVAPPFDYIIGTDVVYAEHLLEP  163 (222)
Q Consensus       138 -~~~-------~~~~~fD~Ii~~d~~y~~~~~~~  163 (222)
                       +..       ..-++.|++|.+--....+.++.
T Consensus        69 ~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~  102 (254)
T d1sbya1          69 AESKKLLKKIFDQLKTVDILINGAGILDDHQIER  102 (254)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHH
Confidence             111       11257999998876666655444

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.26  E-value=0.3  Score=32.67  Aligned_cols=87  Identities=14%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             eEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccc
Q 027530           67 RVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKA  141 (222)
Q Consensus        67 ~vLelGcG~G~~~i~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  141 (222)
                      +|+=+|+|  ..|..++    ..|.+|+.+|. ++.++.+++..                   .+.+..+|..+.+.+..
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------------------~~~vi~Gd~~~~~~l~~   60 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------------------DALVINGDCTKIKTLED   60 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------SSEEEESCTTSHHHHHH
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------------------hhhhccCcccchhhhhh
Confidence            46666665  5555544    45889999998 66665544321                   23566655554443332


Q ss_pred             c-CCCccEEEEeccccCccCHHHHHHHHHHhcCCCeE
Q 027530          142 V-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  177 (222)
Q Consensus       142 ~-~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~  177 (222)
                      . -...|.+++.-.   .+...-+...+.+.+.+...
T Consensus        61 ~~i~~a~~vv~~t~---~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          61 AGIEDADMYIAVTG---KEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             TTTTTCSEEEECCS---CHHHHHHHHHHHHHTTCCCE
T ss_pred             cChhhhhhhcccCC---cHHHHHHHHHHHHHcCCceE
Confidence            2 357898887421   22222344444455666644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.78  Score=32.42  Aligned_cols=80  Identities=21%  Similarity=0.219  Sum_probs=43.8

Q ss_pred             CCCCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecc-hhhHHHHHH---HHHHhhccccccCCCCCCCCCceEEEEeec
Q 027530           61 SKLKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ-IEVLPLLKR---NVEWNTSRISQMNPGSGNLLGSIQAVELDW  133 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~-~~i~la~~g~-~v~~~D~-~~~l~~~~~---n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~  133 (222)
                      .+.++++||=||||- |. +...++..|. +++..+. ++.++.++.   .+..+.               ...+...+|
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---------------~~~~~~~~~   78 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---------------DCVVTVTDL   78 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---------------SCEEEEEET
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---------------CcceEeeec
Confidence            467889999999994 22 2233445566 5888876 444444332   222222               223445566


Q ss_pred             CCCccccccCCCccEEEEeccc
Q 027530          134 GNEDHIKAVAPPFDYIIGTDVV  155 (222)
Q Consensus       134 ~~~~~~~~~~~~fD~Ii~~d~~  155 (222)
                      .+..........+|+||.+.++
T Consensus        79 ~~~~~~~~~~~~~diiIN~Tp~  100 (182)
T d1vi2a1          79 ADQQAFAEALASADILTNGTKV  100 (182)
T ss_dssp             TCHHHHHHHHHTCSEEEECSST
T ss_pred             ccccchhhhhcccceeccccCC
Confidence            5543332223467777766554

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.89  E-value=0.65  Score=34.60  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|..+. +.++..++..+              .++.+...|..+...
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-~~~~~~~~~~g--------------~~~~~~~~Dvs~~~~   66 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-PEAEAAIRNLG--------------RRVLTVKCDVSQPGD   66 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT--------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-HHHHHHHHHcC--------------CcEEEEEeeCCCHHH
Confidence            3688999999998875   44566677999999997331 22223233222              467788888876543


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 027530          139 IK-------AVAPPFDYIIGTDVVY  156 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d~~y  156 (222)
                      ..       ..-++.|++|.|--++
T Consensus        67 v~~~~~~~~~~~G~iDilVnnAG~~   91 (247)
T d2ew8a1          67 VEAFGKQVISTFGRCDILVNNAGIY   91 (247)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1125799998774443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.89  E-value=0.44  Score=34.24  Aligned_cols=43  Identities=30%  Similarity=0.394  Sum_probs=33.2

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (222)
                      ++|-=||+|+ |. ++..++..|.+|+..|. ++.++.+++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~   50 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES   50 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence            5788899987 43 55667778999999998 66888887776654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.65  E-value=0.52  Score=35.20  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             CCCCCeEEEeCCCc--c--H-HHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCC
Q 027530           62 KLKGKRVIELGAGC--G--V-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGN  135 (222)
Q Consensus        62 ~~~~~~vLelGcG~--G--~-~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~  135 (222)
                      +++||++|=-|++.  |  . ++..+++.|++|+.+|.++ ..+.+++.....+               ...+...|..+
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~~   69 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---------------GALLFRADVTQ   69 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---------------CCEEEECCTTC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---------------cccccccccCC
Confidence            57899999999643  4  3 5556777899999999854 5555544333322               44566767666


Q ss_pred             Ccccc-------ccCCCccEEEEec
Q 027530          136 EDHIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       136 ~~~~~-------~~~~~fD~Ii~~d  153 (222)
                      .+...       ..-++.|++|.+-
T Consensus        70 ~~~v~~~~~~~~~~~g~iDilVnna   94 (256)
T d1ulua_          70 DEELDALFAGVKEAFGGLDYLVHAI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCceEEEecc
Confidence            54321       1135789888654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=88.52  E-value=0.19  Score=31.66  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=25.3

Q ss_pred             CCCCCeEEEeCCCc-cHHH-HHHHHhCCEEEEecc
Q 027530           62 KLKGKRVIELGAGC-GVAG-FGMALLGCNVITTDQ   94 (222)
Q Consensus        62 ~~~~~~vLelGcG~-G~~~-i~la~~g~~v~~~D~   94 (222)
                      +++|++|+=+|-|- |... -.|++.|++|++.|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            57899999999884 6533 345567999999996

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=88.41  E-value=0.32  Score=34.80  Aligned_cols=43  Identities=21%  Similarity=0.160  Sum_probs=30.9

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (222)
                      ++|-=||+|+ |. ++..++..|.+|+..|. ++.++.+.+.+..+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~   50 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL   50 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhh
Confidence            4577799986 43 34466677999999998 66777776665544

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.32  E-value=0.42  Score=36.36  Aligned_cols=74  Identities=23%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCcc
Q 027530           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDH  138 (222)
Q Consensus        63 ~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  138 (222)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+..   +              .++.....|..+.+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~--------------~~~~~~~~Dv~~~~~   65 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G--------------DNVLGIVGDVRSLED   65 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--------------GGEEEEECCTTCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--------------CCeeEEecccccHHH
Confidence            578999999998875   44556677999999998 45444333322   1              356777777766543


Q ss_pred             cc-------ccCCCccEEEEec
Q 027530          139 IK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       139 ~~-------~~~~~fD~Ii~~d  153 (222)
                      ..       ..-++.|++|.+-
T Consensus        66 ~~~~~~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          66 QKQAASRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             HHHHHHHHHHHHSCCCEEECCC
T ss_pred             HHHHHHHHHHHhCCcccccccc
Confidence            21       1135789988654

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.01  E-value=1.5  Score=33.60  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=29.2

Q ss_pred             CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc
Q 027530           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ   94 (222)
Q Consensus        60 ~~~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~   94 (222)
                      |-.++||++|=-|++.|+   ++..+++.|++|+.+|.
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            567899999999999985   45567778999999985

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=2.6  Score=27.05  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hh--------hHHHHHHHHHHhhccc
Q 027530           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IE--------VLPLLKRNVEWNTSRI  112 (222)
Q Consensus        66 ~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~--------~l~~~~~n~~~n~~~~  112 (222)
                      ++|+=+|+|. |+ ++..++++|.+|+.++. +.        +.+.+++.+++++..+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~   79 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQL   79 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEE
Confidence            6788898884 44 33445567999999985 31        4455677777777653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.65  E-value=2.1  Score=29.49  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=29.5

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHH-HhCC-EEEEecc-hhhHHHHHH
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMA-LLGC-NVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la-~~g~-~v~~~D~-~~~l~~~~~  103 (222)
                      ...+|.+||=+|||. |+..+.++ ..++ +|+++|. ++-++.+++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            456889999999998 44444444 4455 6999998 555665543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.64  E-value=2.7  Score=28.98  Aligned_cols=34  Identities=29%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             CCCCCCeEEEeCCCccHHH--HHHHHhCCEEEEecc
Q 027530           61 SKLKGKRVIELGAGCGVAG--FGMALLGCNVITTDQ   94 (222)
Q Consensus        61 ~~~~~~~vLelGcG~G~~~--i~la~~g~~v~~~D~   94 (222)
                      ...+|++||=||||--.-+  ..++.+|.+++.+..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence            4678999999999963323  344567888888876

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.39  E-value=0.48  Score=32.72  Aligned_cols=32  Identities=25%  Similarity=0.213  Sum_probs=22.9

Q ss_pred             CCeEEEeCCCc-cHH-HHHHHHhCCEEEEecc-hh
Q 027530           65 GKRVIELGAGC-GVA-GFGMALLGCNVITTDQ-IE   96 (222)
Q Consensus        65 ~~~vLelGcG~-G~~-~i~la~~g~~v~~~D~-~~   96 (222)
                      +|+||=+|+|- |.. +-.|++.|.+|+..|. .+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            47888899974 543 3345566889999998 44

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=84.61  E-value=2.5  Score=29.02  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=54.4

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ...+|.+||=.|||. |..++.+++ .|+ .|+++|. ++-++.+++    .+..               .++.  ..+.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~---------------~~i~--~~~~   83 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---------------ECIN--PQDF   83 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---------------EEEC--GGGC
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc---------------EEEe--CCch
Confidence            456889999999984 555555554 475 6889997 456666554    2211               1111  1110


Q ss_pred             -cc-----ccccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          137 -DH-----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       137 -~~-----~~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                       +.     .......+|+|+-+  .    -...+++....+++++|.+.+.
T Consensus        84 ~~~~~~~~~~~~~~g~D~vid~--~----G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          84 SKPIQEVLIEMTDGGVDYSFEC--I----GNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhHHHHHHHHHcCCCCcEeeec--C----CCHHHHHHHHHhhcCCceeEEE
Confidence             00     01124579999854  1    1246777888888888665443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.61  E-value=0.47  Score=35.10  Aligned_cols=30  Identities=37%  Similarity=0.646  Sum_probs=24.4

Q ss_pred             CCeEEEeCCCc-cHHH-HHHHHhCCEEEEecc
Q 027530           65 GKRVIELGAGC-GVAG-FGMALLGCNVITTDQ   94 (222)
Q Consensus        65 ~~~vLelGcG~-G~~~-i~la~~g~~v~~~D~   94 (222)
                      +|+|+=||+|. |+.+ +.|++.|.+|+.+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeC
Confidence            58999999996 6644 667788999999985

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.81  E-value=1.6  Score=30.47  Aligned_cols=114  Identities=12%  Similarity=0.047  Sum_probs=55.7

Q ss_pred             EEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccccccCC
Q 027530           68 VIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHIKAVAP  144 (222)
Q Consensus        68 vLelGcG~-G-~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  144 (222)
                      |==||+|. | ..+..|++.|.+|++.|. ++.++.+.++-....               .... .   .........-.
T Consensus         5 Ig~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---------------~~~~-a---~~~~~~~~~~~   65 (176)
T d2pgda2           5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT---------------KVLG-A---HSLEEMVSKLK   65 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS---------------SCEE-C---SSHHHHHHHBC
T ss_pred             EEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc---------------cccc-h---hhhhhhhhhhc
Confidence            44466664 3 244455566899999998 555554433211110               0000 0   01111111234


Q ss_pred             CccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEEEEEcChhHHHHHHHHH-hcCCeE
Q 027530          145 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV  203 (222)
Q Consensus       145 ~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~~~~r~~~~~~~f~~~~-~~~~~v  203 (222)
                      ..|.++.+  +........++..+...++++.+++-.. .-.+....++.+.+ +.+...
T Consensus        66 ~~~~ii~~--~~~~~~v~~v~~~l~~~~~~g~iiid~s-T~~~~~~~~~~~~~~~~g~~~  122 (176)
T d2pgda2          66 KPRRIILL--VKAGQAVDNFIEKLVPLLDIGDIIIDGG-NSEYRDTMRRCRDLKDKGILF  122 (176)
T ss_dssp             SSCEEEEC--SCTTHHHHHHHHHHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEE
T ss_pred             ccceEEEe--cCchHHHHHHHHHHHhccccCcEEEecC-cchhHHHHHHHHHHHhcCCce
Confidence            56777764  2234555667777777788877544332 23333334444444 344444

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=82.66  E-value=1.5  Score=33.23  Aligned_cols=113  Identities=8%  Similarity=-0.036  Sum_probs=73.1

Q ss_pred             eCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC-ccccccCCCccE
Q 027530           71 LGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE-DHIKAVAPPFDY  148 (222)
Q Consensus        71 lGcG~G~~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~fD~  148 (222)
                      .=.|+-.++..+.+..-+.++.++ ++-.+.+++|+..               ..++.+...|=-.. ...-++.++=-+
T Consensus        89 ~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~---------------~~~~~v~~~DG~~~l~allPP~~rRgL  153 (271)
T d2oo3a1          89 YYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---------------NKKVYVNHTDGVSKLNALLPPPEKRGL  153 (271)
T ss_dssp             EEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---------------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred             cCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc---------------CCCceEEcCchHHHHHhhCCCCCCceE
Confidence            444555555555555668999998 7766777666542               24677776221100 001122344456


Q ss_pred             EEEeccccCccCHHHHHHHHHHhcC--CCeEEEEEEEEcChhHHHHHHHHHh
Q 027530          149 IIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK  198 (222)
Q Consensus       149 Ii~~d~~y~~~~~~~ll~~~~~~l~--~~g~~~l~~~~r~~~~~~~f~~~~~  198 (222)
                      |+.-+++...+.+..+++.+.+.++  |.|++.+=++.......+.|.+.++
T Consensus       154 VLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~  205 (271)
T d2oo3a1         154 IFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  205 (271)
T ss_dssp             EEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             EEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHH
Confidence            6665565556778889999988876  8999999999887777788887774

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.39  E-value=2.6  Score=29.56  Aligned_cols=90  Identities=22%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CCeEEEeCC-C-ccHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCccc
Q 027530           65 GKRVIELGA-G-CGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNEDHI  139 (222)
Q Consensus        65 ~~~vLelGc-G-~G~~~i~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  139 (222)
                      +++||=.|+ | .|..++.+|+ .|++ |++++. ++....+.+   ..+..               .+.  +..+.+..
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~gad---------------~vi--~~~~~~~~   90 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGFD---------------AAV--NYKTGNVA   90 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCCS---------------EEE--ETTSSCHH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccce---------------EEe--eccchhHH
Confidence            378998884 4 4889988887 5775 666554 442222221   11211               111  22221111


Q ss_pred             ----cccCCCccEEEEeccccCccCHHHHHHHHHHhcCCCeEEEEE
Q 027530          140 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  181 (222)
Q Consensus       140 ----~~~~~~fD~Ii~~d~~y~~~~~~~ll~~~~~~l~~~g~~~l~  181 (222)
                          ...+..+|+|+  |++     -.+.+....+.++++|+++..
T Consensus        91 ~~~~~~~~~GvDvv~--D~v-----Gg~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          91 EQLREACPGGVDVYF--DNV-----GGDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHHCTTCEEEEE--ESS-----CHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHhccCceEEE--ecC-----CchhHHHHhhhccccccEEEe
Confidence                11245699998  333     245677888889999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.76  E-value=1.5  Score=32.65  Aligned_cols=78  Identities=22%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             CCCCeEEEeCC-C---ccH-HHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCC
Q 027530           63 LKGKRVIELGA-G---CGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNE  136 (222)
Q Consensus        63 ~~~~~vLelGc-G---~G~-~~i~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~  136 (222)
                      ++||++|=-|+ |   .|. ++..+++.|++|+.+|.++ ..+.+++ +...+              ....+...|..+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~-l~~~~--------------~~~~~~~~d~~~~   67 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP-IAQEL--------------NSPYVYELDVSKE   67 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH-HHHHT--------------TCCCEEECCTTCH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhhC--------------CceeEeeecccch
Confidence            57899999995 3   333 4556667799999999855 4444433 33222              2334455554443


Q ss_pred             ccc-------cccCCCccEEEEeccc
Q 027530          137 DHI-------KAVAPPFDYIIGTDVV  155 (222)
Q Consensus       137 ~~~-------~~~~~~fD~Ii~~d~~  155 (222)
                      ...       ...-+..|++|.+--.
T Consensus        68 ~~~~~~~~~~~~~~g~id~lV~nag~   93 (274)
T d2pd4a1          68 EHFKSLYNSVKKDLGSLDFIVHSVAF   93 (274)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             hhHHHHHHHHHHHcCCCCeEEeeccc
Confidence            221       1124678888876544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.26  E-value=4  Score=27.99  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=29.3

Q ss_pred             CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027530           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (222)
Q Consensus        61 ~~~~~~~vLelGcG~-G~~~i~la~-~g~-~v~~~D~-~~~l~~~~~  103 (222)
                      ...+|.+||=+|+|. |...+.+++ .|+ +|+++|. ++-++.+++
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence            456889999999985 444444443 454 7999998 555666554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.87  E-value=5.1  Score=25.70  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hh--------hHHHHHHHHHHhhcc
Q 027530           65 GKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IE--------VLPLLKRNVEWNTSR  111 (222)
Q Consensus        65 ~~~vLelGcG~-G~-~~i~la~~g~~v~~~D~-~~--------~l~~~~~n~~~n~~~  111 (222)
                      .++|+=+|+|. |+ ++..++.+|.+|+.++. +.        +.+.+++.++.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~   79 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNIN   79 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCE
Confidence            37899999985 54 44455567999999985 32        445666677776654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.29  E-value=1.5  Score=32.49  Aligned_cols=72  Identities=18%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhccccccCCCCCCCCCceEEEEeecCCCc
Q 027530           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSGNLLGSIQAVELDWGNED  137 (222)
Q Consensus        62 ~~~~~~vLelGcG~G~---~~i~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  137 (222)
                      .++||++|=-|++.|+   ++..+++.|++|+.+|. ++..+.+++    -                ...+.+.|..+..
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~----------------~~~~~~~Dv~~~~   61 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----I----------------GGAFFQVDLEDER   61 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----H----------------TCEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c----------------CCeEEEEeCCCHH
Confidence            4689999999988875   34566677999999998 444443221    1                1245566766543


Q ss_pred             ccc-------ccCCCccEEEEec
Q 027530          138 HIK-------AVAPPFDYIIGTD  153 (222)
Q Consensus       138 ~~~-------~~~~~fD~Ii~~d  153 (222)
                      ...       ..-++.|++|.+-
T Consensus        62 ~v~~~~~~~~~~~G~iDiLVnnA   84 (248)
T d2d1ya1          62 ERVRFVEEAAYALGRVDVLVNNA   84 (248)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCeEEEeC
Confidence            321       1125789988764