Citrus Sinensis ID: 027578

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEEcccccEEEcccccHHHHHHHccccEEEcccHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHEEEEcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccccHHcccccccccEEEEEEccccccHHHEcHHHcccHHHHHHHHHHHHHcccccccccEEcccccEEEEccccHHHHHHHHHHHHEccccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
MINFEATElrlglpggnggsseggggggggekaknnningmkrgFADTVVDLKLnlstkesggidviektkgksasatgatdlskppaksqvvgwppvrsfRKNIMAVQkdneegdnkassssssnVAFVKVsmdgapylrKVDLKLYKSYQELSDALGKMFssftidyvptyedkdgdwmlvgdvpwdmfVDSCKRLRIMKgseaiglapravekcknrs
Flexible Loop (DISEMBL)
MINFEATELrlglpggnggssegggggggGEKAKNNNINGMKRGFADTVVDLKLNlstkesggidviektkgksasatgatdlskppaksqvvgwppvrSFRKNIMAVQKdneegdnkassssssnvafVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKgseaiglapravekcknrs
Low Complexity Region (SEG)
MINFEATELRLGLPggnggsseggggggggekaknnningMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAssssssNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Disordered region (IsUnstruct)
********************************************FADTVVDLKLN***********************************************************************VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL************
Disordered Region (DISOPRED)
MINFEATELRLGL********************************************************************************************************************VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM********************
Disordered Region (DISEMBL)
MINFEATELRLGLPGGNG************EKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKT**********************VGWPPVRSFRKNIMAVQ****************NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA********
Disordered Region (DISPRO)
MINFEATELRLGLPG*********************************************************************KPPAKSQVVGWPPVRSFRKNIMAVQ***************SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
O24407	236	Auxin-responsive protein	yes	no	0.904	0.847	0.599	5e-70
Q38832	228	Auxin-responsive protein	no	no	0.923	0.894	0.569	7e-66
P13089	243	Auxin-induced protein AUX	no	no	0.909	0.827	0.557	9e-65
Q38825	243	Auxin-responsive protein	no	no	0.936	0.851	0.529	1e-62
P93830	229	Auxin-responsive protein	no	no	0.873	0.842	0.52	1e-58
P0C132	277	Auxin-responsive protein	yes	no	0.950	0.758	0.501	9e-58
Q75GK0	233	Auxin-responsive protein	no	no	0.846	0.802	0.463	8e-54
Q38826	321	Auxin-responsive protein	no	no	0.972	0.669	0.438	1e-50
Q9ZSY8	305	Auxin-responsive protein	no	no	0.972	0.704	0.446	1e-50
Q10D34	236	Auxin-responsive protein	no	no	0.601	0.563	0.660	2e-49

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  263 bits (673), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 154/257 (59%), Positives = 175/257 (68%), Gaps = 57/257 (22%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G          GE A  NN    KRGF++TV DLKLNLS   
Sbjct: 1   MINFEATELRLGLPGGNHG----------GEMAGKNN---GKRGFSETV-DLKLNLS--- 43

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNEEGD 116
           S  +D + K   ++        + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  EG+
Sbjct: 44  STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGN 99

Query: 117 NKASSSS--------SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI- 167
           +K S SS         + VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTI 
Sbjct: 100 DKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG 159

Query: 168 -----------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 204
                                  DYVPTYEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGS
Sbjct: 160 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGS 219

Query: 205 EAIGLAPRAVEKCKNRS 221
           EAIGLAPRA+EKCKNRS
Sbjct: 220 EAIGLAPRALEKCKNRS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 139/244 (56%), Positives = 160/244 (65%), Gaps = 40/244 (16%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           +N + TEL LGLPGG          G G            KRGF++TV DLKLNL + + 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQ 48

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASS 121
           G +D+   T G     T   D SKPPAK+QVVGWPPVR++RKN+MA QK  E    +A S
Sbjct: 49  GHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMS 104

Query: 122 SSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI-------------- 167
           S    VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+              
Sbjct: 105 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNE 164

Query: 168 ----------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKC 217
                     +YVP+YEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA+EK 
Sbjct: 165 SKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKF 224

Query: 218 KNRS 221
           KNRS
Sbjct: 225 KNRS 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  246 bits (628), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 146/262 (55%), Positives = 166/262 (63%), Gaps = 61/262 (23%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADT----------VVD 51
           + FE TELRLGLPG NGG+ E               +   KRGF++T           VD
Sbjct: 1   MGFEETELRLGLPG-NGGTEE---------------VLIRKRGFSETETGHEDESATTVD 44

Query: 52  LKLNLSTKESGGI-----DVIEKTKGKSASATG-ATDLSKPPAKSQVVGWPPVRSFRKNI 105
           L LNLS+KE+        D  +K K      T    D +KPPAK+QVVGWPPVRSFRKN+
Sbjct: 45  LMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNM 104

Query: 106 MAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 165
           +AVQK   E   K   +SS N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSF
Sbjct: 105 LAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSF 161

Query: 166 TI------------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIM 201
           T                         DYVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIM
Sbjct: 162 TFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIM 221

Query: 202 KGSEAI--GLAPRAVEKCKNRS 221
           KG EAI  GLAPRA+ KCKNRS
Sbjct: 222 KGKEAIGLGLAPRAMAKCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 161/253 (63%), Gaps = 46/253 (18%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           ++N +ATEL LGLPGG            G            KRGF++TV DL LNL + +
Sbjct: 5   LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
            G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +  G  +AS
Sbjct: 53  EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSS-GAEEAS 110

Query: 121 SS-------SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------ 167
           S         ++    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+      
Sbjct: 111 SEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQ 170

Query: 168 ------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 209
                             +YVP+YEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEA+GL
Sbjct: 171 GMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGL 230

Query: 210 APRAVEK-CKNRS 221
           APRA+EK CKNRS
Sbjct: 231 APRAMEKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 130/250 (52%), Positives = 155/250 (62%), Gaps = 57/250 (22%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +N   TEL LGLPGG+  +                 + G KRGF++TV DLKLNL    +
Sbjct: 7   LNLRETELCLGLPGGDTVAP----------------VTGNKRGFSETV-DLKLNLNNEPA 49

Query: 58  TKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIM-AVQKDNEEGD 116
            KE      +     K  SA    D +KPPAK+QVVGWPPVRS+RKN+M + QK      
Sbjct: 50  NKEGSTTHDVVTFDSKEKSAC-PKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQK------ 102

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI--------- 167
              SS      AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+         
Sbjct: 103 ---SSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM 159

Query: 168 ----------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAP 211
                           DYVP+YEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGLAP
Sbjct: 160 IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAP 219

Query: 212 RAVEKCKNRS 221
           RA+EKCK+R+
Sbjct: 220 RAMEKCKSRA 229

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  223 bits (568), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 166/283 (58%), Gaps = 73/283 (25%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLS---- 57
           + FEATELRLGLPGG G              A     +  KRGFA+T +DLKL L     
Sbjct: 5   LAFEATELRLGLPGGGGDGD---------AAAAAARSSSGKRGFAET-IDLKLKLEPAAA 54

Query: 58  -------------TKESGGIDVI------------------EKTKGKSASATGATDLSKP 86
                              +D++                  +++  +S+  T A D  KP
Sbjct: 55  AVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKP 114

Query: 87  PA-KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLR 141
            A K+QVVGWPPVRS+RKNI+AVQ    KD  +G    S + ++  AFVKVSMDGAPYLR
Sbjct: 115 RAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLR 174

Query: 142 KVDLKLYKSYQELSDALGKMFSSFTI-----------------------DYVPTYEDKDG 178
           KVDLK+YKSY ELS AL KMFSSFTI                       +YVPTYEDKDG
Sbjct: 175 KVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNGMNESKIADLLNGSEYVPTYEDKDG 234

Query: 179 DWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 221
           DWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRA+EKCKNRS
Sbjct: 235 DWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  209 bits (533), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 145/261 (55%), Gaps = 74/261 (28%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + F+ TELRLGLPG    ++   G                KRGFA+T+ DLKL L     
Sbjct: 4   LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAP 46

Query: 62  GGID-----------------------VIEKTKGKSASATGATDLSKPPA-KSQVVGWPP 97
             +                         ++++  +S+  T   D  KP A K+QVVGWPP
Sbjct: 47  AAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPP 106

Query: 98  VRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDA 157
           VRSFRKN++A                    A VKVSMDGAPYLRK+D+ +YKSY ELS A
Sbjct: 107 VRSFRKNVLA--------------EKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMA 152

Query: 158 LGKMFSSFTI-------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRL 198
              MF+SFTI                   +YVPTYEDKDGDWMLVGDVPW+MFV+SCKRL
Sbjct: 153 FQNMFTSFTIGKCGSHQQLKESNKLRDDLEYVPTYEDKDGDWMLVGDVPWEMFVESCKRL 212

Query: 199 RIMKGSEAIGLAPRAVEKCKN 219
           RIMKGSEAIGLAPRAVEKCK+
Sbjct: 213 RIMKGSEAIGLAPRAVEKCKS 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 61/276 (22%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGG--------------------GGGGEKAKNNNINGM 41
           +NF+ATELRLGLP       E   G                     G       N ++G 
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 42  KRGFADTVVDLK-LNLSTKESGGIDVIEKTKGKSASATGATDLSK--------PPAKSQV 92
           KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AK+QV
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQV 166

Query: 93  VGWPPVRSFRKNIMA--VQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKS 150
           VGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y S
Sbjct: 167 VGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 151 YQELSDALGKMFSSFTI--------------------------DYVPTYEDKDGDWMLVG 184
           YQ+LS AL KMFS FT+                          ++V TYEDKDGDWMLVG
Sbjct: 223 YQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVG 282

Query: 185 DVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 220
           DVPW++F ++C++L+IMKGS++IGLAP AVEK KN+
Sbjct: 283 DVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/271 (44%), Positives = 153/271 (56%), Gaps = 56/271 (20%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +NF+ATELRLGLPG    S E            +  ++G KR F+D + D    +    S
Sbjct: 38  LNFKATELRLGLPGSE--SPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGS 95

Query: 58  TKESGGI--------DVIEKTKGKSASATGA--------TDLSKPPAKSQVVGWPPVRSF 101
           T  +G +         V++   GKS + T          +  + P +K+QVVGWPP+RSF
Sbjct: 96  TTATGDVGSGSGPRTSVVK--DGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSF 153

Query: 102 RKNIMAVQKDNEEGDN------KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
           RKN MA  +  + G+N      +A S       +VKVSM+GAPYLRK+DLK YKSY ELS
Sbjct: 154 RKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELS 213

Query: 156 DALGKMFSSFTI--------------------------DYVPTYEDKDGDWMLVGDVPWD 189
            AL KMFS FTI                          +YV TYEDKD DWMLVGDVPW+
Sbjct: 214 SALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273

Query: 190 MFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 220
           MF+ SCK+LRIMK SEAIGLAPR +EKC++R
Sbjct: 274 MFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10D34|IAA13_ORYSJ Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 115/153 (75%), Gaps = 20/153 (13%)

Query: 89  KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----ASSSSSSNVAFVKVSMDGAPY 139
           K+Q VGWPPVRSFR+NIM VQ    K  EE D +     A++S S++ AFVKVSMDGAPY
Sbjct: 84  KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPY 143

Query: 140 LRKVDLKLYKSYQELSDALGKMFSSFTI-----------DYVPTYEDKDGDWMLVGDVPW 188
           LRKVDLK+Y SY++LS AL KMF +FT            D V TYEDKDGDWMLVGDVPW
Sbjct: 144 LRKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWMLVGDVPW 203

Query: 189 DMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 221
            MFV+SCKRLRIMKGSEAIGLAPRA +K KN+S
Sbjct: 204 QMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
224123424	246	predicted protein [Populus trichocarpa]	0.936	0.841	0.677	7e-79
224131258	250	predicted protein [Populus trichocarpa]	0.945	0.836	0.641	2e-76
20385508	249	auxin-regulated protein [Populus tremula	0.936	0.831	0.634	8e-76
255580939	257	Auxin-responsive protein IAA16, putative	0.941	0.809	0.626	1e-74
110826446	258	auxin-regulated protein [Populus tomento	0.954	0.817	0.631	2e-74
332167939	246	auxin-responsive protein [Gossypium hirs	0.904	0.813	0.634	8e-73
312282545	234	unnamed protein product [Thellungiella h	0.895	0.846	0.599	3e-71
224066307	237	predicted protein [Populus trichocarpa]	0.914	0.852	0.612	1e-70
157849760	231	indoleacetic acid-induced protein 16 [Br	0.891	0.852	0.611	7e-70
225437217	231	PREDICTED: auxin-induced protein AUX28-l	0.891	0.852	0.634	1e-69

>gi|224123424|ref|XP_002319075.1| predicted protein [Populus trichocarpa] gi|222857451|gb|EEE94998.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 182/245 (74%), Gaps = 38/245 (15%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG G        G  GE AK+N     KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGIGN-------GNDGEVAKSNG----KRGFSETV-DLKLNLSTKE 61

Query: 61  SG-GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKA 119
           SG G D  +  K K+ +   +TD +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +   K 
Sbjct: 62  SGKGGDEEKVMKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSNDNGEK- 120

Query: 120 SSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------------ 167
           S SS + VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI            
Sbjct: 121 SGSSGTGVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFM 180

Query: 168 ------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE 215
                       DYVPTYEDKDGDWMLVGDVPW+MFVDSCKRLRIMKGSEAIGLAPRAVE
Sbjct: 181 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAVE 240

Query: 216 KCKNR 220
           KCKNR
Sbjct: 241 KCKNR 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131258|ref|XP_002328494.1| predicted protein [Populus trichocarpa] gi|118484744|gb|ABK94241.1| unknown [Populus trichocarpa] gi|222838209|gb|EEE76574.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/248 (64%), Positives = 178/248 (71%), Gaps = 39/248 (15%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MIN+E TELRLGLPGG          G  GE AK N     KRGF++TV DLKLNLSTKE
Sbjct: 15  MINYEETELRLGLPGG-------ASNGNDGEAAKGNG----KRGFSETV-DLKLNLSTKE 62

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKD-NEEGDN 117
           +G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK+ N+EG+ 
Sbjct: 63  TGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 122

Query: 118 KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI---------- 167
            +SS ++   AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTI          
Sbjct: 123 ASSSGTTGTAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKD 182

Query: 168 --------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 213
                         +YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPRA
Sbjct: 183 FMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRA 242

Query: 214 VEKCKNRS 221
           VEKCKNRS
Sbjct: 243 VEKCKNRS 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385508|gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 158/249 (63%), Positives = 176/249 (70%), Gaps = 42/249 (16%)

Query: 1   MINFEATELRLGLPGG--NGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLST 58
           M+NFE TELRLGLPGG  NG  SE     G             KRGF++TV DLKLNLST
Sbjct: 15  MMNFEETELRLGLPGGVSNGNDSEAAKSNG-------------KRGFSETV-DLKLNLST 60

Query: 59  KESG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGD 116
           KE+G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +  
Sbjct: 61  KETGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEG 120

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI--------- 167
            KASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTI         
Sbjct: 121 EKASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTK 180

Query: 168 ---------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPR 212
                          +YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPR
Sbjct: 181 DFMNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPR 240

Query: 213 AVEKCKNRS 221
           AVEKCKNRS
Sbjct: 241 AVEKCKNRS 249

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580939|ref|XP_002531288.1| Auxin-responsive protein IAA16, putative [Ricinus communis] gi|223529121|gb|EEF31101.1| Auxin-responsive protein IAA16, putative [Ricinus communis]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/257 (62%), Positives = 185/257 (71%), Gaps = 49/257 (19%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG+  +          E AK   +NG KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGSNVND--------SEFAK---VNG-KRGFSETV-DLKLNLSTKE 60

Query: 61  SGGIDVI---EKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN-EEGD 116
             G DVI   E  K K+   + + D +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +EG+
Sbjct: 61  PSGKDVIVGEETMKEKATVPSSSNDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSTDEGE 120

Query: 117 NKASSSSS--------SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI- 167
              ++S+         ++ AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI 
Sbjct: 121 KGTATSAPAAAATSGSTSAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 180

Query: 168 -----------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 204
                                  +YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGS
Sbjct: 181 NCGSQGMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGS 240

Query: 205 EAIGLAPRAVEKCKNRS 221
           EAIGLAPRAVEKCKNRS
Sbjct: 241 EAIGLAPRAVEKCKNRS 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110826446|gb|ABH01143.1| auxin-regulated protein [Populus tomentosa]

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/247 (63%), Positives = 177/247 (71%), Gaps = 36/247 (14%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           M+NFE TELRLGLPGG          G   E AK+N   G +  F++TV DLKLNLSTK+
Sbjct: 15  MMNFEETELRLGLPGGVSN-------GNDPEAAKSNGKRGQR--FSETV-DLKLNLSTKD 64

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNK 118
           +G  G D  +    + A A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +   K
Sbjct: 65  TGKDGSDQEKAAMKEKAVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 124

Query: 119 ASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI----------- 167
           ASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTI           
Sbjct: 125 ASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKEF 184

Query: 168 -------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAV 214
                        +YVPTYEDKDGDWMLVGDVPW MFVDSCKRLRIMKGSEAIGLAPRAV
Sbjct: 185 MNESKLIDLLNSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAV 244

Query: 215 EKCKNRS 221
           EKCKNRS
Sbjct: 245 EKCKNRS 251

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167939|gb|AEE25654.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/252 (63%), Positives = 178/252 (70%), Gaps = 52/252 (20%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           INFE TELRLGLPG NG           GE  KNN     KRGF++TV +LKLNLS+KE+
Sbjct: 15  INFEETELRLGLPGANGND---------GETTKNNG----KRGFSETV-NLKLNLSSKET 60

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK--DNEEGDNKA 119
              D  +K K KS+     TD +KPPAK+QVVGWPPVRSFRKNIMAVQK    EEG +K 
Sbjct: 61  VAEDS-DKMKEKSS-----TDPAKPPAKAQVVGWPPVRSFRKNIMAVQKASSEEEGGSKK 114

Query: 120 SSSSSSNVA------FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------ 167
           + +S++ +       FVKVSMDGAPYLRKVDLKLYKSYQ+LSDAL KMFSSFTI      
Sbjct: 115 AGNSAAAITTTTAAAFVKVSMDGAPYLRKVDLKLYKSYQQLSDALSKMFSSFTIGNCGSH 174

Query: 168 ------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 209
                             +YVPTYEDKDGDWMLVGDVPW+MFVDSCKRLRIMKGSEAIGL
Sbjct: 175 GMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL 234

Query: 210 APRAVEKCKNRS 221
           APRAVEKCKNRS
Sbjct: 235 APRAVEKCKNRS 246

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282545|dbj|BAJ34138.1| unnamed protein product [Thellungiella halophila]

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/257 (59%), Positives = 174/257 (67%), Gaps = 59/257 (22%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G         G   AKNN     KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG---------GDIAAKNNG----KRGFSETV-DLKLNLSSTA 46

Query: 61  SGGIDV--IEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEE---- 114
              +    I+  KGK         + KPPAK+QVVGWPPVRSFRKN+M+ QK   E    
Sbjct: 47  LDSVSEVDIQNLKGK---------VVKPPAKTQVVGWPPVRSFRKNVMSGQKQTTEVAAE 97

Query: 115 ------GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI- 167
                 G + A+SS+++ VA+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFTI 
Sbjct: 98  GTEKTCGSSGATSSANAAVAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTIG 157

Query: 168 -----------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGS 204
                                  DYVPTYEDKDGDWMLVGDVPW MFVDSCKR+RIMKGS
Sbjct: 158 NYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWKMFVDSCKRIRIMKGS 217

Query: 205 EAIGLAPRAVEKCKNRS 221
           EAIGLAPRA+EKCKNRS
Sbjct: 218 EAIGLAPRALEKCKNRS 234

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066307|ref|XP_002302075.1| predicted protein [Populus trichocarpa] gi|222843801|gb|EEE81348.1| predicted protein [Populus trichocarpa] gi|429326564|gb|AFZ78622.1| hypothetical protein [Populus tomentosa]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/245 (61%), Positives = 167/245 (68%), Gaps = 43/245 (17%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + FE TELRLGLPG         GGG  GE  +       KRGF++TV DLKL LS+KES
Sbjct: 9   MGFEETELRLGLPGN--------GGGAEGEMVR-------KRGFSETV-DLKLKLSSKES 52

Query: 62  GGIDVIEKTKG-KSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
           G     EKT   +      ATD +KPPAK+QVVGWPPVRSFRKN++AVQK +   D +  
Sbjct: 53  GADPNHEKTSSLQREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSST--DQECE 110

Query: 121 SSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------------- 167
                N  FVKVSMDGAPYLRKVDLK+YK+YQELSDALGKMFSSFTI             
Sbjct: 111 KVPGGNATFVKVSMDGAPYLRKVDLKMYKTYQELSDALGKMFSSFTIGNCGSHGLKDFLN 170

Query: 168 -----------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 216
                      DYVPTYEDKDGDWMLVGDVPWDMFV+SCKRLRIMKG+EA GLAPRA+EK
Sbjct: 171 ESKLIDLLNGTDYVPTYEDKDGDWMLVGDVPWDMFVESCKRLRIMKGTEATGLAPRAMEK 230

Query: 217 CKNRS 221
           CKNRS
Sbjct: 231 CKNRS 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849760|gb|ABV89663.1| indoleacetic acid-induced protein 16 [Brassica rapa]

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 156/255 (61%), Positives = 174/255 (68%), Gaps = 58/255 (22%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTK- 59
           MINFEATELRLGLPGGN G          G+ A  NN    KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG----------GDMAMKNN---GKRGFSETV-DLKLNLSSTA 46

Query: 60  --ESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNE 113
                G+D +E  K K         + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  
Sbjct: 47  LDSVSGVD-LENMKEK---------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTAGDAT 96

Query: 114 EGDNKASSS---SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI--- 167
           EG  K SSS   +SS  A+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFT+   
Sbjct: 97  EGTEKTSSSNGATSSAAAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTLGNY 156

Query: 168 ---------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA 206
                                DYVPTYEDKDGDWMLVGDVPW MFVDSCKR+RIMKGSEA
Sbjct: 157 GPQGMKDFMNESRLIDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVDSCKRIRIMKGSEA 216

Query: 207 IGLAPRAVEKCKNRS 221
           IGLAPRA+EKCKNRS
Sbjct: 217 IGLAPRALEKCKNRS 231

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437217|ref|XP_002281796.1| PREDICTED: auxin-induced protein AUX28-like isoform 2 [Vitis vinifera]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/235 (63%), Positives = 168/235 (71%), Gaps = 38/235 (16%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           +N EATELRLGLPGG+ GS          E  +       KRGF++TV DLKLNLS KE+
Sbjct: 20  LNLEATELRLGLPGGSEGS----------EVVR-------KRGFSETV-DLKLNLSGKEA 61

Query: 62  G----GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN 117
           G     +  ++K K KS    G  D ++PPAK+QVVGWPPVRSFRKN++A QK   E   
Sbjct: 62  GVDDNKVKSLQKEKSKSLLPCG-NDPARPPAKAQVVGWPPVRSFRKNMLAGQKGGSEEGE 120

Query: 118 KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI---------- 167
           K S     N AFVKVSMDGAPYLRKVDLK+Y SYQELS+ALG MFSSFTI          
Sbjct: 121 KVSC----NAAFVKVSMDGAPYLRKVDLKMYTSYQELSNALGNMFSSFTIGDKLMDLLNG 176

Query: 168 -DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 221
            D+VPTYEDKDGDWMLVGDVPW+MFVDSCKRLRIMKG EAIGLAPRA+EKCKNRS
Sbjct: 177 FDHVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGKEAIGLAPRAMEKCKNRS 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.696	0.633	0.473	7.8e-58
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.791	0.767	0.612	6.8e-56
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.719	0.597	0.421	9.8e-48
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.552	0.360	0.439	6.8e-47
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.923	0.864	0.501	1.6e-45
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.411	0.298	0.543	3.7e-44
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.968	0.832	0.457	1.7e-43
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.628	0.596	0.589	1.9e-42
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.968	0.813	0.466	2.5e-42
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	0.597	0.709	0.538	2.5e-41

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 82/173 (47%), Positives = 102/173 (58%)

Query:     1 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKE 60
             ++N +ATEL LGLP                           KRGF++TV DL LNL + +
Sbjct:     5 LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query:    61 SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN---EEGDN 117
              G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +   EE  +
Sbjct:    53 EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASS 111

Query:   118 KAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI 167
             +         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+
Sbjct:   112 EKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM 164

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 125/204 (61%), Positives = 144/204 (70%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAK+QVVGWPPVR++
Sbjct:    30 KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNY 86

Query:   102 RKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKM 161
             RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KM
Sbjct:    87 RKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKM 144

Query:   162 FSSFTI------------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKR 197
             FSSFT+                        +YVP+YEDKDGDWMLVGDVPW MFV+SCKR
Sbjct:   145 FSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKR 204

Query:   198 LRIMKGSEAIGLAPRAVEKCKNRS 221
             LRIMKGSEAIGLAPRA+EK KNRS
Sbjct:   205 LRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 288 (106.4 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 73/173 (42%), Positives = 91/173 (52%)

Query:     6 ATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXX----MKRGFADTVVDLKLNLSTKES 61
             ATELRLGLP                               KRGFAD +V        + +
Sbjct:    21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAA 80

Query:    62 GGIDVIEKTKGKSASATGATDLSK---PPAKSQVVGWPPVRSFRKNIMAVQKDNEEG--D 116
             GG     K    +A A    +  K   P AK+QVVGWPP+RS+RKN MA+ +   +G  D
Sbjct:    81 GG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDD 135

Query:   117 NKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDY 169
              +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+ +
Sbjct:   136 GEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGH 188

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 6.8e-47, Sum P(3) = 6.8e-47
 Identities = 62/141 (43%), Positives = 84/141 (59%)

Query:    42 KRGFADTV---VDLKLNLSTK------ESGGIDVIEKTK-----GKSASATGATDLSKPP 87
             KRGF+DT+    + K ++ T+      E+     + K        K  S+T     S P 
Sbjct:   120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA 179

Query:    88 AKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLK 146
             AK+Q+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+
Sbjct:   180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLR 235

Query:   147 LYKSYQELSDALGKMFSSFTI 167
              Y +Y ELS AL KMF++FT+
Sbjct:   236 SYTNYGELSSALEKMFTTFTL 256

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 127/253 (50%), Positives = 145/253 (57%)

Query:     1 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKE 60
             MINFEATELRLGLP                           KRGF++TV DLKLNLS+  
Sbjct:     1 MINFEATELRLGLPGGNHGGEMAGKNNG-------------KRGFSETV-DLKLNLSSTA 46

Query:    61 SGGIDVI--EKTKGKSASATG-ATDLSKPPAKSQVVGWPPVRSFRKNIM--AVQ-KDNEE 114
                +  +  E  K K       A  +  PP +S       V S +K     A +  D   
Sbjct:    47 MDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKN---VMSGQKPTTGDATEGNDKTS 103

Query:   115 GDNKAXXXXXX--NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI----- 167
             G + A         VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTI     
Sbjct:   104 GSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGP 163

Query:   168 -------------------DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIG 208
                                DYVPTYEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGSEAIG
Sbjct:   164 QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIG 223

Query:   209 LAPRAVEKCKNRS 221
             LAPRA+EKCKNRS
Sbjct:   224 LAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 56/103 (54%), Positives = 67/103 (65%)

Query:    71 KGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXX 124
             K K +SAT       P +K+QVVGWPP+RSFRKN MA  +  + G+N      +A     
Sbjct:   129 KEKKSSATA------PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPE 182

Query:   125 XNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI 167
                 +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTI
Sbjct:   183 QPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTI 225

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 108/236 (45%), Positives = 132/236 (55%)

Query:     3 NFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESG 62
             + + TELRLGLP                           KRGF+D    L  + +   + 
Sbjct:    27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA----KRGFSDEARPLPASAAAAAAA 82

Query:    63 GIDVI-----EKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN 117
             G         E    +      A     P AK+QVVGWPP+RS+RKN MA  +     ++
Sbjct:    83 GKGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKED 142

Query:   118 KAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI---------- 167
              A         +VKVSMDGAPYLRKVDLK YK+Y++LS AL KMF  FT           
Sbjct:   143 -AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDGLSESRK 201

Query:   168 --DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 221
               +YV TYEDKDGDWMLVGDVPW+MF +SC+RLRIMKGS+AIGLAPRAV+K KNR+
Sbjct:   202 DGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 102/173 (58%), Positives = 120/173 (69%)

Query:    67 IEKTKGKSASATGATDLSKPPA-KSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXX 125
             ++++  +S+  T   D  KP A K+QVVGWPPVRSFRKN++A +K       KA      
Sbjct:    75 MKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLA-EKC------KAA----- 122

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------------------ 167
               A VKVSMDGAPYLRK+D+ +YKSY ELS A   MF+SFTI                  
Sbjct:   123 --ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESNKLRDD 180

Query:   168 -DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKN 219
              +YVPTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPRAVEKCK+
Sbjct:   181 LEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 111/238 (46%), Positives = 133/238 (55%)

Query:     2 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXX---XXXMKRGFADTVVDLKLNLST 58
             ++ + TELRLGLP                              KR F D   +  L   T
Sbjct:    32 VDLKGTELRLGLPGSESPDRRPAAIAAAAATATTLELLPAKGAKRVFPD---EAALTPPT 88

Query:    59 KESG-GIDVIEKTK-GKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQ--KDNEE 114
               +G G    E  + G            +P AK+QVVGWPP+RS+RKN MA    K N+E
Sbjct:    89 AAAGKGKAAREGEEVGAEEEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTMATNQIKSNKE 148

Query:   115 GDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------- 167
              D  A         +VKVSMDGAPYLRKVDLK YK+Y+++S  L KMF  F+        
Sbjct:   149 -DVDAKQGQ--GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAEN 205

Query:   168 ----DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 221
                 +YV TYEDKDGDWMLVGDVPW+MF DSC+RLRIMKGS+AIGLAPRA EK KNR+
Sbjct:   206 QKDGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 84/156 (53%), Positives = 102/156 (65%)

Query:    66 VIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXX 125
             V+ +   K   +TG T+ + PP K+Q+VGWPPVRS+RKN +  +K   EG          
Sbjct:    38 VLPEATEKEIESTGKTETASPP-KAQIVGWPPVRSYRKNNVQTKKSESEGQGN------- 89

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------------DYVPTY 173
                +VKVSMDGAPYLRK+DL +YK Y EL  +L  MF  F++            D+VPTY
Sbjct:    90 ---YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEYFEREGYKGSDFVPTY 145

Query:   174 EDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL 209
             EDKDGDWMLVGDVPW+MFV SCKRLRIMKGSE  GL
Sbjct:   146 EDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C132	IAA30_ORYSJ	No assigned EC number	0.5017	0.9502	0.7581	yes	no
O24407	IAA16_ARATH	No assigned EC number	0.5992	0.9049	0.8474	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	4e-91

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  264 bits (678), Expect = 4e-91
 Identities = 117/223 (52%), Positives = 139/223 (62%), Gaps = 48/223 (21%)

Query: 3   NFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESG 62
           N +ATELRLGLPGG+   SE             +++   KRGF++   D           
Sbjct: 2   NLKATELRLGLPGGSEPESEPST----------SSVTSNKRGFSEVTED----------- 40

Query: 63  GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSS 122
           GI         + S +   D +KPPAK+QVVGWPPVRS+RKN +  +K            
Sbjct: 41  GISSSLGEDKSTISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSLREKK------------ 88

Query: 123 SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI------------DYV 170
              + ++VKVSMDGAPYLRKVDLK+YKSY ELS AL KMFS FTI            +YV
Sbjct: 89  ---SGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGESGLLDLLNGSEYV 145

Query: 171 PTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 213
           PTYEDKDGDWMLVGDVPW+MFV+SCKRLRIMKGSEAIGLAPR+
Sbjct: 146 PTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.97
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.61
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.56
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.54
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.52
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	97.38
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	97.31
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.75
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	96.22
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.94
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.9
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.24
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	94.89
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	85.92
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	80.25

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1e-64  Score=435.47  Aligned_cols=192  Identities=53%  Similarity=0.850  Sum_probs=6.0

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCcchhhhhhcccCCCCCCCc-cccccccCCccCc-CC
Q 027578            2 INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGI-DVIEKTKGKSASA-TG   79 (221)
Q Consensus         2 lnlk~TELrLGLPG~~~~~~~~~~~~~~~~~~~~~~~~~~KRgfset~idl~~~ls~~~~~~~-~~~~~~~~~~~~~-~~   79 (221)
                      ||||+|||||||||+.+++.       ..........+++||+|+++ |+............. ............. ..
T Consensus         1 ln~~~TELrLGLPG~~~~~~-------~~~~~~~~~~~~~kR~F~~a-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDA-------SSSSSSKKSSSGNKRGFSEA-IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSS   72 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCc-------ccccccccccCcccccchhh-hhhcccccccccccccccCccccccccccccc
Confidence            89999999999999987631       01112223458899999998 776541100000000 0000000000000 00


Q ss_pred             -CCCCCCCCCCCCCCCCCCccchhhhhhhhcccCccccCccCCCCCCCcceEEEEEcCcccceeeccCCcCCHHHHHHHH
Q 027578           80 -ATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL  158 (221)
Q Consensus        80 -~~~~~~p~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~~~~~~~~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L  158 (221)
                       ......|.+++|+||||||++||||.+....            ....++||||+|||+||||||||++|+||++|+.+|
T Consensus        73 ~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L  140 (215)
T PF02309_consen   73 DSSSSSPPASKAQVVGWPPVRSFRKNSLSEKQ------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSAL  140 (215)
T ss_dssp             -------------BTTBS----S---------------------------------------------------------
T ss_pred             ccccCCCCcccccccCCCcccccccccccccc------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHH
Confidence             0122345578999999999999999876211            122479999999999999999999999999999999


Q ss_pred             Hhhh---ccC-----------------CCceEeEEecCCCCeEEecCCChHHHhhcceeeEEecCCcccCCchhh
Q 027578          159 GKMF---SSF-----------------TIDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA  213 (221)
Q Consensus       159 ~~MF---~~~-----------------~~~~~l~YeD~eGD~mLVGDvPW~~Fv~svkRLrI~~~se~~gl~~~~  213 (221)
                      ++||   .+.                 ..+|+|||+|+||||||||||||+|||++||||+||+.+|++||+||+
T Consensus       141 ~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  141 EKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            9999   332                 128999999999999999999999999999999999999999999986

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.97  E-value=2.2e-05  Score=57.15  Aligned_cols=67  Identities=24%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             eEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC-ChHHHhhcce
Q 027578          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV-PWDMFVDSCK  196 (221)
Q Consensus       129 ~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk  196 (221)
                      -||++..|. +=|.+.+..--+|.+|...++..|+.....+++.|.|.||||..+-+. =|++.++.++
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence            479999997 444688888889999999999999987779999999999999988754 5777777765

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.61  E-value=0.00036  Score=50.68  Aligned_cols=65  Identities=20%  Similarity=0.370  Sum_probs=53.0

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC-CChHHHhhcce
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK  196 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  196 (221)
                      |||...|.  -|.+-+..--+|.+|...+.+.|+.....+.|.|+|.||||..+.+ .=|.+.++.++
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~   69 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence            67877553  6777788888999999999999997656899999999999987665 46777776655

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.56  E-value=0.00029  Score=53.41  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=45.3

Q ss_pred             eEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecC
Q 027578          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGD  185 (221)
Q Consensus       129 ~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGD  185 (221)
                      -|||...|.  .+.+-|..--+|++|.+++.++|+... ..|.|-|.|.||||.++--
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeec
Confidence            389999887  344555555699999999999999765 6899999999999998743

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.54  E-value=0.00053  Score=49.48  Aligned_cols=66  Identities=20%  Similarity=0.389  Sum_probs=52.9

Q ss_pred             eEEEEEcCcccceeeccC-CcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC-CChHHHhhcce
Q 027578          129 FVKVSMDGAPYLRKVDLK-LYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK  196 (221)
Q Consensus       129 ~vKV~MdG~~igRkvDL~-~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  196 (221)
                      -|||+-.|.  -|.+=+. .--+|.+|...|.+.|+.....+.+.|.|.||||..+.+ .=|++.++.++
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence            378888765  3444444 888999999999999997656899999999999999987 56676666655

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.52  E-value=0.00031  Score=54.33  Aligned_cols=67  Identities=25%  Similarity=0.302  Sum_probs=53.9

Q ss_pred             eEEEEEcCcccceeeccC---CcCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCCChHHHhhccee
Q 027578          129 FVKVSMDGAPYLRKVDLK---LYKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDVPWDMFVDSCKR  197 (221)
Q Consensus       129 ~vKV~MdG~~igRkvDL~---~~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDvPW~~Fv~svkR  197 (221)
                      -|||..+|.-+=-++++.   .--+|++|.+.+.+.|.+.. .++++.|.|.||||..+-..  .+|..++.+
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccH--HHHHHHHHH
Confidence            489999998555555554   45799999999999999865 69999999999999999776  666665554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=97.38  E-value=0.00066  Score=51.96  Aligned_cols=53  Identities=17%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEec
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVG  184 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVG  184 (221)
                      |||...|.-+--+++.+..-+|.+|..++.++|++.  .+.+.|.|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEEEE
Confidence            799999997777888877889999999999999976  89999999999998874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=97.31  E-value=0.00099  Score=51.07  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEec-CCChHHHhhccee-eEE
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVG-DVPWDMFVDSCKR-LRI  200 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVG-DvPW~~Fv~svkR-LrI  200 (221)
                      ||...|.+--=-.+|.....+|+++++-|+.||.+..+.+.|-|.|.+||.+-+- |+-+..=++++++ |||
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl   75 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRI   75 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEE
Confidence            5666666633335666677999999999999999988999999999999999875 4455555567764 444

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.75  E-value=0.0027  Score=49.05  Aligned_cols=49  Identities=22%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             cccceeeccC--CcCCHHHHHHHHHhhhccCC---CceEeEEecCCCCeEEecC
Q 027578          137 APYLRKVDLK--LYKSYQELSDALGKMFSSFT---IDYVPTYEDKDGDWMLVGD  185 (221)
Q Consensus       137 ~~igRkvDL~--~~~sY~eL~~~L~~MF~~~~---~~~~l~YeD~eGD~mLVGD  185 (221)
                      .|-||.+=++  ...|+.+|..++.+-|+...   ..|+|.|.|.||||.++--
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~   60 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITS   60 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEec
Confidence            4466665444  37899999999999999765   5899999999999998753

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=96.22  E-value=0.016  Score=44.62  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=53.0

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC-CChHHHhhccee
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCKR  197 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svkR  197 (221)
                      .||...|.  .|++-...-=+|..|...|+.+|.+....+.++|.|.|||..-+-| .=.++|.+-..|
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~~~   69 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhccc
Confidence            47888885  7888888889999999999999998776799999999999886554 455556554443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.94  E-value=0.024  Score=43.75  Aligned_cols=55  Identities=20%  Similarity=0.307  Sum_probs=46.0

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCC
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDv  186 (221)
                      +|++..|.-+--.+|.  .-+|++|.+.+..||.... ..+++.|.|.|||---+...
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~   58 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQ   58 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCH
Confidence            7899999855555665  7789999999999999755 38999999999998877654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.90  E-value=0.055  Score=41.62  Aligned_cols=69  Identities=20%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             EEEEEcCcccceeeccCCc-CCHHHHHHHHHhhhccC---CCceEeEEecCCCCeEEecCC---ChHHHhhcceeeEE
Q 027578          130 VKVSMDGAPYLRKVDLKLY-KSYQELSDALGKMFSSF---TIDYVPTYEDKDGDWMLVGDV---PWDMFVDSCKRLRI  200 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~-~sY~eL~~~L~~MF~~~---~~~~~l~YeD~eGD~mLVGDv---PW~~Fv~svkRLrI  200 (221)
                      +|+...|. | |.+-+..- =+|.+|...+.+.|...   ...+.+.|.|.|||+.-+-+.   -|..-+...++|+|
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~l~~   78 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTL   78 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceEEEE
Confidence            56666554 4 44444432 39999999999999953   148999999999999999875   33333334445555

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.24  E-value=0.097  Score=40.54  Aligned_cols=58  Identities=22%  Similarity=0.412  Sum_probs=44.0

Q ss_pred             eEEEEEcC---ccccee--eccCCcCCHHHHHHHHHhhhccC-CCceEeEEecCCCCeEEecCC
Q 027578          129 FVKVSMDG---APYLRK--VDLKLYKSYQELSDALGKMFSSF-TIDYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       129 ~vKV~MdG---~~igRk--vDL~~~~sY~eL~~~L~~MF~~~-~~~~~l~YeD~eGD~mLVGDv  186 (221)
                      .||.+..|   .+=-|.  ||=....+|++|...+.++|... ...+++.|.|.|||..-+...
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssd   65 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSD   65 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCH
Confidence            56767666   223344  34466779999999999999754 459999999999999888765

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=94.89  E-value=0.1  Score=40.50  Aligned_cols=65  Identities=22%  Similarity=0.330  Sum_probs=51.4

Q ss_pred             ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC-ChHHHhhcce
Q 027578          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV-PWDMFVDSCK  196 (221)
Q Consensus       128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk  196 (221)
                      .-|||+-.|.  .|-|-+..--+|++|...+..+|++ ...+++-|.|. ||..-+++. =-++-+.++|
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~   68 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-KRRLKIKMKDD-GDMITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-CCceEEEEEcC-CCCccccCHHHHHHHHHHHH
Confidence            4589999887  6777777777899999999999996 46999999999 999988875 2334444444

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=85.92  E-value=3.5  Score=31.64  Aligned_cols=70  Identities=14%  Similarity=0.145  Sum_probs=55.2

Q ss_pred             ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCC-CeEEecCCChHHHhhcce--eeEE
Q 027578          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDG-DWMLVGDVPWDMFVDSCK--RLRI  200 (221)
Q Consensus       128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eG-D~mLVGDvPW~~Fv~svk--RLrI  200 (221)
                      --|||+..+   .=.|-...=-+|.+|+..|.+-++....+-+|-|.|.+. +...++|.-++.-.+.|+  ||++
T Consensus         3 ~vvKV~f~~---tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l~d~dle~aws~~~~~~lTL   75 (80)
T cd06406           3 YVVKVHFKY---TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVILSDTNMEDVWSQAKDGCLTL   75 (80)
T ss_pred             eEEEEEEEE---EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCcChHHHHHHHHhhcCCeEEE
Confidence            358999997   345566666789999999999999876789999999885 443449999998888887  4544

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=80.25  E-value=3  Score=32.91  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=34.3

Q ss_pred             eccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC
Q 027578          143 VDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD  185 (221)
Q Consensus       143 vDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD  185 (221)
                      =||+.--+|.+|..-..+-|...  +..|-|.|.|||..-+=|
T Consensus        22 e~l~~~P~~kdLl~lmr~~f~~~--dIaLNYrD~EGDLIRlld   62 (92)
T cd06399          22 EDLSSTPLLKDLLELTRREFQRE--DIALNYRDAEGDLIRLLS   62 (92)
T ss_pred             cccccCccHHHHHHHHHHHhchh--heeeeeecCCCCEEEEcc
Confidence            37888899999999999999854  789999999999865433

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	97.17
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.91
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.54
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.08
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	94.65
1pqs_A	77	Cell division control protein 24; alpha and beta p	93.21
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	92.36
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	89.06
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	87.38
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	87.34

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=97.17  E-value=0.0011  Score=50.31  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             CcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC-ChHHHhhcce
Q 027578          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV-PWDMFVDSCK  196 (221)
Q Consensus       126 ~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk  196 (221)
                      +..-||...|.+--=-.||-....+|++|+..|+++|.+..+.+++.|.|.|||++-+=++ -..+=+.+++
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence            4577898888884444666677899999999999999987789999999999999988766 2333345665

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.91  E-value=0.0028  Score=48.04  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             CcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCC-ceEeEEecCCCCeEEecCC
Q 027578          126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI-DYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       126 ~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~-~~~l~YeD~eGD~mLVGDv  186 (221)
                      +..=||++..|.-+  .+.+..--+|++|.+.|..+|..... .+++.|.|.|||+.-+-..
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd   64 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQ   64 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSH
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCH
Confidence            34678999999744  44444456999999999999997543 6999999999999776543

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.54  E-value=0.031  Score=43.19  Aligned_cols=61  Identities=15%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             CcceEEEEEcCc----ccceeeccCC-----------cCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCC
Q 027578          126 NVAFVKVSMDGA----PYLRKVDLKL-----------YKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       126 ~~~~vKV~MdG~----~igRkvDL~~-----------~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDv  186 (221)
                      ...-||++..|.    .--|.+-|..           ..+|++|...+.++|.... ..|++.|.|.|||+.-+-+.
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence            367789998762    2445555532           2489999999999997544 47999999999999988766

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.08  E-value=0.056  Score=42.84  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             CcceEEEEEcCc----ccceeeccC-----------CcCCHHHHHHHHHhhhccCC-CceEeEEecCCCCeEEecCC
Q 027578          126 NVAFVKVSMDGA----PYLRKVDLK-----------LYKSYQELSDALGKMFSSFT-IDYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       126 ~~~~vKV~MdG~----~igRkvDL~-----------~~~sY~eL~~~L~~MF~~~~-~~~~l~YeD~eGD~mLVGDv  186 (221)
                      ...-||++..|.    .=-|++-|.           .-.+|++|...+.++|.... ..|++.|.|.|||+.-+-..
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence            367899999751    233555443           24599999999999996433 58999999999999888765

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=94.65  E-value=0.11  Score=40.10  Aligned_cols=70  Identities=16%  Similarity=0.293  Sum_probs=53.9

Q ss_pred             cceEEEEEcCc------ccceeeccCCcCCHHHHHHHHHhhhccCC-----CceEeEEecCCCCeEEecCC-ChHHHhhc
Q 027578          127 VAFVKVSMDGA------PYLRKVDLKLYKSYQELSDALGKMFSSFT-----IDYVPTYEDKDGDWMLVGDV-PWDMFVDS  194 (221)
Q Consensus       127 ~~~vKV~MdG~------~igRkvDL~~~~sY~eL~~~L~~MF~~~~-----~~~~l~YeD~eGD~mLVGDv-PW~~Fv~s  194 (221)
                      ..-|||+-+..      .=.|.|=...--+|++|+..+.+-|....     ...++-|+|.|||+...++. =|++-+.+
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~   84 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM   84 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence            46788887742      12366767788899999999999999642     23799999999999877765 79988887


Q ss_pred             ce
Q 027578          195 CK  196 (221)
Q Consensus       195 vk  196 (221)
                      ++
T Consensus        85 ~~   86 (98)
T 1q1o_A           85 LA   86 (98)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=93.21  E-value=0.061  Score=39.57  Aligned_cols=54  Identities=19%  Similarity=0.348  Sum_probs=42.7

Q ss_pred             eccCCcCCHHHHHHHHHhhhccC-----CCceEeEEecCCCCeEEecC-CChHHHhhcce
Q 027578          143 VDLKLYKSYQELSDALGKMFSSF-----TIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCK  196 (221)
Q Consensus       143 vDL~~~~sY~eL~~~L~~MF~~~-----~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  196 (221)
                      |=...--+|++|+..+.+-|..+     ....++-|+|.|||+...++ .=|++-+.++|
T Consensus         6 i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            6 LLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             EECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            33444567999999999999965     35789999999999987665 47998888763

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=92.36  E-value=0.7  Score=34.42  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEec-CCCCeEEecCCChHHHhhcce--eeEE
Q 027578          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYED-KDGDWMLVGDVPWDMFVDSCK--RLRI  200 (221)
Q Consensus       128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD-~eGD~mLVGDvPW~~Fv~svk--RLrI  200 (221)
                      .=|||+..   +.-.|....=-+|.+|...|.+-+......-+|-|.| .+|.|++.+|.=|+.-...++  ||++
T Consensus         6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL   78 (83)
T 1oey_A            6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL   78 (83)
T ss_dssp             EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred             EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence            45677766   7778888888899999999999999776688999999 688889999999998887754  5655

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=89.06  E-value=1.3  Score=33.46  Aligned_cols=55  Identities=9%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEec
Q 027578          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVG  184 (221)
Q Consensus       128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVG  184 (221)
                      .-+||..-|...---|.-..--++++|...+..+|+..  .++|.|.|.|||-.-|=
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEEEe
Confidence            45789999985444464445778999999999999964  67999999999988764

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=87.38  E-value=1.4  Score=34.20  Aligned_cols=65  Identities=8%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             cceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCCChHHHhhcc
Q 027578          127 VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDVPWDMFVDSC  195 (221)
Q Consensus       127 ~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~sv  195 (221)
                      ..-+||..-|...---|.-..--++++|...+..+|+..  .++|.|.|.|||-.-|=  -+.+|-+.+
T Consensus        14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~--Sq~E~eEAl   78 (101)
T 1wj6_A           14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSIN--SQGEYEEAL   78 (101)
T ss_dssp             CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCC--SHHHHHHHH
T ss_pred             cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEe--cHHHHHHHH
Confidence            456799999986554575555778999999999999974  67999999999998773  355555443

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=87.34  E-value=0.84  Score=35.75  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             ccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC
Q 027578          144 DLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV  186 (221)
Q Consensus       144 DL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv  186 (221)
                      ||+.--.|.+|+.-..+-|..  .+..|-|.|.|||+.-+=|.
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~--~DIaLNYrD~eGDLIrildd   68 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR--EDIALNYRDAEGDLVRLLSD   68 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC--SSEEEEEECTTSCEEECCSH
T ss_pred             ccccCCCHHHHHHHHHHHhcc--cceeeeeecCCCCEEEEcch
Confidence            678888999999999999994  47899999999999877655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.39
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.64
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	94.71
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	83.43
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	82.35

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0002  Score=52.35  Aligned_cols=66  Identities=8%  Similarity=0.067  Sum_probs=52.7

Q ss_pred             ceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC-CChHHHhhcc
Q 027578          128 AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD-VPWDMFVDSC  195 (221)
Q Consensus       128 ~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~sv  195 (221)
                      .-|||...|..+=-+|-+..-.+|.+|...|...|+..  .+.|.|.|.|+||.++.- .=.++.+..+
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~--~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMA   71 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc--cceEEEEcCCCCEEEEecHHHHHHHHHHH
Confidence            46899999986666787778899999999999999974  589999999999988753 3445554433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0027  Score=45.24  Aligned_cols=73  Identities=11%  Similarity=0.078  Sum_probs=53.7

Q ss_pred             CCCcceEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC-CChHHHhhcceeeEE
Q 027578          124 SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD-VPWDMFVDSCKRLRI  200 (221)
Q Consensus       124 ~~~~~~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svkRLrI  200 (221)
                      +.+..-|||+..+.-  |.+-|..=-+|.+|..++.+.|+.  ..++|-|+|.||||..+-+ .=+++-++...||.+
T Consensus         9 ~~~~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~Dedgd~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             CCCCEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhCC--CceEEEEEcCCCCEEEEeCHHHHHHHHHhcCcEEE
Confidence            345678899998874  445555567899999999999985  3699999999999986654 345555555445543

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.041  Score=39.57  Aligned_cols=67  Identities=19%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             EEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecCC-ChHHHhhcce
Q 027578          130 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGDV-PWDMFVDSCK  196 (221)
Q Consensus       130 vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk  196 (221)
                      ||=..|.+=-=-.+|....++|++.+.-|+.|-.+..+++.+.|.|..||.+-+-.+ -+.-=+.+++
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCCCCCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            444444442223688888999999999999999998899999999999999988655 3333345665

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.43  E-value=0.89  Score=33.62  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=35.6

Q ss_pred             eeccCCcCCHHHHHHHHHhhhccCCCceEeEEecCCCCeEEecC
Q 027578          142 KVDLKLYKSYQELSDALGKMFSSFTIDYVPTYEDKDGDWMLVGD  185 (221)
Q Consensus       142 kvDL~~~~sY~eL~~~L~~MF~~~~~~~~l~YeD~eGD~mLVGD  185 (221)
                      -=||+.--+|.+|..-..+-|...  +.+|-|.|.|||..-+=|
T Consensus        24 eedl~~~P~ykdLl~lmr~~f~~~--dIaLNYrD~eGDLIRlld   65 (105)
T d1oeyj_          24 EEDLSSTPLLKDLLELTRREFQRE--DIALNYRDAEGDLVRLLS   65 (105)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHCCS--SEEEEEECTTSCEEECCS
T ss_pred             ccccccCccHHHHHHHHHHHhccc--eeEeeeecCCCCEEEEcc
Confidence            347889999999999999999853  789999999999875543

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=1.8  Score=30.66  Aligned_cols=53  Identities=21%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             eEEEEEcCcccceeeccCCcCCHHHHHHHHHhhhccCCC-ceEeEEecCCCCeEEe
Q 027578          129 FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTI-DYVPTYEDKDGDWMLV  183 (221)
Q Consensus       129 ~vKV~MdG~~igRkvDL~~~~sY~eL~~~L~~MF~~~~~-~~~l~YeD~eGD~mLV  183 (221)
                      -+|+.-.|..+--.+|..  -+|++|..++..|.+.... -+.+-+.|.|||---+
T Consensus         3 riK~~y~G~i~it~~~~~--it~e~l~~evr~~C~f~~~q~fT~KWiDeEGDPCTI   56 (83)
T d1wmha_           3 RVKAYYRGDIMITHFEPS--ISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTV   56 (83)
T ss_dssp             EEEEEETTEEEEEEECTT--CCHHHHHHHHHHHTTCCTTCCCEEEEECTTSCEEEC
T ss_pred             EEEEEecCeEEEEecCCC--ccHHHHHHHHHHHhCCCcCCcEEEEEEcCCCCceee
Confidence            578899998877777765  5899999999999996443 6889999999996543